Query 001945
Match_columns 992
No_of_seqs 326 out of 3188
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 12:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 5E-117 1E-121 963.4 98.7 976 2-989 3-1012(1075)
2 KOG2023 Nuclear transport rece 100.0 7.7E-66 1.7E-70 523.0 49.4 750 3-988 13-827 (885)
3 KOG1241 Karyopherin (importin) 100.0 1E-57 2.2E-62 472.8 62.4 747 4-822 2-821 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 2.6E-47 5.6E-52 381.3 58.8 705 3-759 4-818 (858)
5 KOG2171 Karyopherin (importin) 100.0 6.9E-39 1.5E-43 351.8 82.7 853 13-957 47-1026(1075)
6 KOG1824 TATA-binding protein-i 100.0 6.3E-32 1.4E-36 286.7 70.8 839 7-943 9-966 (1233)
7 KOG2023 Nuclear transport rece 100.0 8.9E-34 1.9E-38 289.9 43.5 646 204-942 12-736 (885)
8 KOG1991 Nuclear transport rece 100.0 6.5E-31 1.4E-35 283.2 66.3 667 1-691 2-793 (1010)
9 KOG1241 Karyopherin (importin) 100.0 1.8E-28 3.8E-33 256.1 57.2 670 217-955 12-730 (859)
10 KOG1824 TATA-binding protein-i 100.0 7.4E-26 1.6E-30 241.0 71.4 840 19-957 149-1114(1233)
11 KOG1992 Nuclear export recepto 100.0 1.3E-26 2.7E-31 244.1 54.3 716 2-774 4-817 (960)
12 KOG0213 Splicing factor 3b, su 100.0 1.3E-25 2.9E-30 232.5 51.0 713 160-977 365-1102(1172)
13 KOG1993 Nuclear transport rece 100.0 3.1E-24 6.8E-29 225.0 57.4 585 5-597 2-709 (978)
14 KOG2274 Predicted importin 9 [ 100.0 1.4E-22 3.1E-27 216.3 59.6 580 2-596 3-668 (1005)
15 COG5215 KAP95 Karyopherin (imp 99.9 3E-21 6.5E-26 195.1 58.6 584 314-953 109-728 (858)
16 KOG0213 Splicing factor 3b, su 99.9 1.5E-20 3.2E-25 195.6 57.4 672 5-755 365-1112(1172)
17 COG5656 SXM1 Importin, protein 99.9 3.7E-19 7.9E-24 185.9 65.3 498 1-508 1-587 (970)
18 KOG2021 Nuclear mRNA export fa 99.9 5.7E-20 1.2E-24 192.0 55.2 582 1-596 1-747 (980)
19 COG5181 HSH155 U2 snRNP splice 99.9 2.3E-21 4.9E-26 197.5 39.6 688 169-957 178-888 (975)
20 PLN03200 cellulose synthase-in 99.9 1.8E-17 3.9E-22 199.6 68.3 814 3-918 13-934 (2102)
21 COG5181 HSH155 U2 snRNP splice 99.9 1.7E-19 3.6E-24 184.1 40.7 669 5-759 170-921 (975)
22 PLN03200 cellulose synthase-in 99.9 4.5E-17 9.7E-22 196.3 55.8 716 117-939 57-812 (2102)
23 KOG2022 Nuclear transport rece 99.9 1.8E-14 3.9E-19 154.8 67.9 529 3-535 7-672 (982)
24 COG5101 CRM1 Importin beta-rel 99.9 2.9E-15 6.3E-20 154.0 55.1 478 4-492 15-651 (1053)
25 KOG0915 Uncharacterized conser 99.8 1.8E-16 3.8E-21 179.2 45.4 637 158-916 817-1490(1702)
26 KOG0915 Uncharacterized conser 99.8 3.7E-14 8E-19 160.8 52.2 657 119-898 819-1513(1702)
27 COG5657 CSE1 CAS/CSE protein i 99.8 1.2E-12 2.6E-17 141.9 57.1 574 7-592 8-668 (947)
28 KOG1242 Protein containing ada 99.8 7.2E-15 1.6E-19 153.8 36.4 482 90-600 28-548 (569)
29 KOG1242 Protein containing ada 99.7 4E-14 8.8E-19 148.3 39.4 524 218-847 29-557 (569)
30 KOG1991 Nuclear transport rece 99.7 2.8E-09 6.2E-14 117.5 70.9 779 39-954 5-868 (1010)
31 KOG0212 Uncharacterized conser 99.7 8.4E-13 1.8E-17 134.9 40.1 394 164-578 5-409 (675)
32 KOG0212 Uncharacterized conser 99.7 9E-13 2E-17 134.7 39.1 383 315-751 16-407 (675)
33 PF01602 Adaptin_N: Adaptin N 99.7 3.1E-13 6.7E-18 155.2 39.5 508 3-573 7-522 (526)
34 KOG1248 Uncharacterized conser 99.6 1.8E-08 4E-13 113.6 67.1 771 14-876 106-921 (1176)
35 PTZ00429 beta-adaptin; Provisi 99.6 1.5E-10 3.2E-15 131.0 51.3 469 3-532 68-545 (746)
36 KOG0166 Karyopherin (importin) 99.6 2E-13 4.3E-18 142.4 26.2 356 120-533 68-436 (514)
37 PTZ00429 beta-adaptin; Provisi 99.6 2.3E-10 5E-15 129.5 52.7 503 4-573 33-544 (746)
38 KOG2081 Nuclear transport regu 99.6 9.2E-12 2E-16 128.7 37.1 451 21-492 2-539 (559)
39 PF01602 Adaptin_N: Adaptin N 99.6 1.5E-11 3.3E-16 141.2 42.0 472 6-532 45-523 (526)
40 KOG1943 Beta-tubulin folding c 99.6 3E-09 6.6E-14 118.2 55.4 471 73-578 336-840 (1133)
41 KOG0166 Karyopherin (importin) 99.5 1.1E-11 2.3E-16 129.7 31.2 352 47-451 77-439 (514)
42 KOG0211 Protein phosphatase 2A 99.5 1.2E-10 2.7E-15 129.8 38.7 564 92-750 95-664 (759)
43 KOG1248 Uncharacterized conser 99.5 3.7E-07 8E-12 103.5 66.5 766 35-916 93-920 (1176)
44 KOG2274 Predicted importin 9 [ 99.5 4.5E-08 9.7E-13 106.9 53.2 650 216-958 14-760 (1005)
45 KOG1992 Nuclear export recepto 99.5 3.8E-07 8.2E-12 98.8 58.4 705 78-899 6-798 (960)
46 COG5064 SRP1 Karyopherin (impo 99.4 1.2E-11 2.7E-16 118.3 16.0 355 119-532 72-442 (526)
47 KOG0211 Protein phosphatase 2A 99.4 2.4E-09 5.2E-14 119.7 35.8 534 6-576 123-665 (759)
48 KOG1943 Beta-tubulin folding c 99.4 1E-06 2.2E-11 98.7 54.7 241 335-593 339-592 (1133)
49 PF10508 Proteasom_PSMB: Prote 99.4 6.6E-09 1.4E-13 115.3 38.5 392 83-490 43-463 (503)
50 COG5064 SRP1 Karyopherin (impo 99.3 1.6E-09 3.5E-14 104.0 23.7 350 47-449 82-444 (526)
51 KOG1060 Vesicle coat complex A 99.2 6.3E-08 1.4E-12 104.0 35.2 436 4-493 72-537 (968)
52 PRK13800 putative oxidoreducta 99.2 2.1E-09 4.6E-14 128.6 27.3 273 81-445 624-896 (897)
53 PRK09687 putative lyase; Provi 99.2 2.2E-09 4.8E-14 108.4 22.6 253 209-529 26-278 (280)
54 PF10508 Proteasom_PSMB: Prote 99.2 8.8E-08 1.9E-12 106.5 36.4 311 123-451 43-369 (503)
55 PRK13800 putative oxidoreducta 99.2 5.8E-09 1.2E-13 124.9 28.4 275 119-486 622-896 (897)
56 PRK09687 putative lyase; Provi 99.2 9E-09 2E-13 104.0 24.4 254 120-445 25-279 (280)
57 PF12755 Vac14_Fab1_bd: Vacuol 99.2 5.2E-10 1.1E-14 90.9 11.5 94 353-447 2-95 (97)
58 KOG1060 Vesicle coat complex A 99.1 1.1E-06 2.3E-11 94.8 38.2 464 83-600 40-554 (968)
59 PF12460 MMS19_C: RNAPII trans 99.1 2E-07 4.4E-12 101.5 32.3 378 121-508 2-413 (415)
60 KOG1993 Nuclear transport rece 99.1 5.2E-05 1.1E-09 82.4 52.9 385 433-899 411-816 (978)
61 KOG1020 Sister chromatid cohes 99.1 0.00011 2.5E-09 85.7 55.6 434 412-954 809-1270(1692)
62 KOG0392 SNF2 family DNA-depend 99.1 2.8E-05 6E-10 88.7 47.0 143 47-191 88-239 (1549)
63 KOG4224 Armadillo repeat prote 99.0 1.4E-08 3.1E-13 98.7 17.7 380 129-535 58-448 (550)
64 KOG1062 Vesicle coat complex A 99.0 1.5E-06 3.3E-11 94.3 33.8 416 121-579 110-548 (866)
65 PF12460 MMS19_C: RNAPII trans 99.0 5.8E-07 1.3E-11 98.0 31.8 365 221-595 17-414 (415)
66 KOG2020 Nuclear transport rece 99.0 6.7E-06 1.5E-10 95.5 41.1 224 4-238 11-261 (1041)
67 PF08506 Cse1: Cse1; InterPro 99.0 1.4E-07 3E-12 98.9 24.5 219 221-443 111-370 (370)
68 KOG1059 Vesicle coat complex A 99.0 9.5E-06 2.1E-10 86.9 37.7 268 136-449 127-402 (877)
69 PF12348 CLASP_N: CLASP N term 98.9 5.5E-08 1.2E-12 97.3 17.8 190 340-537 10-210 (228)
70 KOG1062 Vesicle coat complex A 98.9 0.00019 4E-09 78.7 44.5 502 16-569 47-575 (866)
71 KOG1061 Vesicle coat complex A 98.9 2.7E-06 5.8E-11 92.6 30.9 440 5-487 51-526 (734)
72 PF12348 CLASP_N: CLASP N term 98.9 6.2E-08 1.3E-12 96.9 16.2 188 310-502 18-219 (228)
73 COG5240 SEC21 Vesicle coat com 98.9 8.1E-05 1.7E-09 77.7 37.9 256 290-574 262-554 (898)
74 KOG1967 DNA repair/transcripti 98.8 0.00055 1.2E-08 76.2 58.6 232 640-894 786-1023(1030)
75 KOG1967 DNA repair/transcripti 98.8 0.00066 1.4E-08 75.6 48.4 125 807-934 891-1020(1030)
76 KOG4224 Armadillo repeat prote 98.8 4.7E-07 1E-11 88.4 18.3 372 97-491 65-448 (550)
77 PF12755 Vac14_Fab1_bd: Vacuol 98.8 6.7E-08 1.5E-12 78.7 10.6 87 394-480 2-88 (97)
78 KOG1020 Sister chromatid cohes 98.8 0.0012 2.5E-08 77.7 56.6 163 319-489 797-960 (1692)
79 KOG1059 Vesicle coat complex A 98.8 0.00054 1.2E-08 74.1 41.3 293 99-428 129-422 (877)
80 PF03810 IBN_N: Importin-beta 98.7 4.3E-08 9.3E-13 78.1 8.3 66 23-88 1-76 (77)
81 KOG1240 Protein kinase contain 98.7 1.1E-06 2.5E-11 99.1 20.8 301 119-451 423-728 (1431)
82 KOG2021 Nuclear mRNA export fa 98.7 0.001 2.2E-08 72.3 51.6 394 417-875 333-785 (980)
83 KOG1061 Vesicle coat complex A 98.7 0.00017 3.7E-09 79.1 34.4 501 10-574 20-527 (734)
84 KOG1240 Protein kinase contain 98.6 8.9E-06 1.9E-10 92.2 25.4 299 160-492 423-728 (1431)
85 KOG2032 Uncharacterized conser 98.6 1.1E-05 2.4E-10 82.9 23.6 312 334-698 214-531 (533)
86 KOG0891 DNA-dependent protein 98.6 0.0015 3.2E-08 82.9 45.8 572 314-938 108-763 (2341)
87 KOG4535 HEAT and armadillo rep 98.6 0.00015 3.2E-09 74.2 29.9 331 393-775 270-625 (728)
88 KOG0414 Chromosome condensatio 98.6 0.0034 7.3E-08 72.3 47.4 103 47-150 323-431 (1251)
89 PF05804 KAP: Kinesin-associat 98.5 0.00038 8.3E-09 78.8 33.2 346 123-490 255-650 (708)
90 PF03378 CAS_CSE1: CAS/CSE pro 98.5 6.1E-05 1.3E-09 81.1 24.9 254 452-757 18-279 (435)
91 cd00020 ARM Armadillo/beta-cat 98.4 1.6E-06 3.5E-11 76.8 10.6 110 338-447 8-119 (120)
92 PF13513 HEAT_EZ: HEAT-like re 98.4 5.5E-07 1.2E-11 65.8 5.6 55 351-405 1-55 (55)
93 KOG1058 Vesicle coat complex C 98.4 0.0067 1.5E-07 66.3 41.4 372 7-410 24-466 (948)
94 KOG2956 CLIP-associating prote 98.4 6.7E-05 1.5E-09 76.8 21.2 191 219-422 300-493 (516)
95 KOG0168 Putative ubiquitin fus 98.4 0.00077 1.7E-08 74.3 29.9 226 350-582 181-420 (1051)
96 KOG4535 HEAT and armadillo rep 98.3 0.0011 2.3E-08 68.2 28.7 458 92-597 9-583 (728)
97 KOG1822 Uncharacterized conser 98.3 0.013 2.8E-07 71.1 40.1 360 350-749 972-1385(2067)
98 PLN03076 ARF guanine nucleotid 98.3 0.014 3E-07 73.4 42.1 294 47-347 1148-1512(1780)
99 COG5096 Vesicle coat complex, 98.3 0.016 3.5E-07 65.5 40.8 138 1-148 53-196 (757)
100 KOG2259 Uncharacterized conser 98.3 0.001 2.2E-08 71.2 27.5 301 158-493 197-515 (823)
101 KOG1820 Microtubule-associated 98.2 3.7E-05 8E-10 87.6 17.5 204 332-544 248-454 (815)
102 KOG0168 Putative ubiquitin fus 98.2 0.0031 6.8E-08 69.7 31.0 434 4-458 168-639 (1051)
103 KOG2956 CLIP-associating prote 98.2 0.00013 2.9E-09 74.7 19.1 202 383-594 291-497 (516)
104 KOG4524 Uncharacterized conser 98.2 0.022 4.8E-07 64.6 51.3 166 819-985 798-980 (1014)
105 KOG4413 26S proteasome regulat 98.2 0.006 1.3E-07 59.7 29.0 339 133-489 55-439 (524)
106 KOG0414 Chromosome condensatio 98.2 0.029 6.3E-07 65.1 64.4 166 798-980 938-1104(1251)
107 KOG1077 Vesicle coat complex A 98.2 0.018 3.9E-07 62.6 36.8 314 121-464 114-449 (938)
108 KOG0891 DNA-dependent protein 98.2 0.066 1.4E-06 68.9 54.2 185 6-192 8-207 (2341)
109 cd00020 ARM Armadillo/beta-cat 98.2 9.1E-06 2E-10 71.9 9.1 111 378-488 7-119 (120)
110 PF08389 Xpo1: Exportin 1-like 98.1 1.1E-05 2.3E-10 74.5 9.4 129 92-230 1-148 (148)
111 COG5240 SEC21 Vesicle coat com 98.1 0.018 4E-07 60.9 42.7 454 314-894 80-554 (898)
112 COG5656 SXM1 Importin, protein 98.1 0.027 5.8E-07 61.8 65.3 328 475-876 431-780 (970)
113 KOG4413 26S proteasome regulat 98.1 0.0056 1.2E-07 59.8 26.6 252 319-577 63-335 (524)
114 PF13513 HEAT_EZ: HEAT-like re 98.1 6.7E-06 1.4E-10 60.0 5.5 55 392-446 1-55 (55)
115 KOG1410 Nuclear transport rece 98.1 0.029 6.2E-07 60.7 48.2 146 3-149 5-159 (1082)
116 KOG1078 Vesicle coat complex C 98.1 0.035 7.6E-07 61.5 34.9 89 97-191 38-131 (865)
117 PF03378 CAS_CSE1: CAS/CSE pro 98.1 0.0041 8.8E-08 67.3 27.9 223 412-680 19-253 (435)
118 KOG1293 Proteins containing ar 98.1 0.012 2.7E-07 63.6 30.6 144 347-490 387-534 (678)
119 KOG1077 Vesicle coat complex A 98.0 0.033 7.2E-07 60.6 35.5 287 202-509 107-453 (938)
120 PF04826 Arm_2: Armadillo-like 98.0 0.0003 6.6E-09 69.6 17.2 191 337-538 12-210 (254)
121 KOG4653 Uncharacterized conser 98.0 0.00047 1E-08 76.2 19.7 233 421-701 729-967 (982)
122 cd00256 VATPase_H VATPase_H, r 98.0 0.003 6.6E-08 67.0 25.3 349 34-406 52-424 (429)
123 KOG1058 Vesicle coat complex C 98.0 0.04 8.6E-07 60.6 33.5 403 115-578 53-466 (948)
124 KOG4653 Uncharacterized conser 98.0 0.0019 4.2E-08 71.5 23.3 216 263-489 741-964 (982)
125 PF12717 Cnd1: non-SMC mitotic 97.9 0.00014 3E-09 68.7 12.2 127 840-978 3-139 (178)
126 PF04510 DUF577: Family of unk 97.9 0.00067 1.5E-08 60.2 15.1 154 78-235 3-164 (174)
127 KOG1078 Vesicle coat complex C 97.9 0.069 1.5E-06 59.3 37.8 112 67-189 53-164 (865)
128 KOG2032 Uncharacterized conser 97.9 0.019 4E-07 60.1 27.4 268 155-448 254-531 (533)
129 KOG2259 Uncharacterized conser 97.9 0.00078 1.7E-08 72.1 18.0 249 311-579 210-515 (823)
130 PF13646 HEAT_2: HEAT repeats; 97.9 6.2E-05 1.3E-09 61.9 7.9 85 340-444 2-88 (88)
131 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0091 2E-07 61.1 24.1 353 35-407 65-438 (442)
132 PF12717 Cnd1: non-SMC mitotic 97.8 0.00063 1.4E-08 64.3 14.8 109 314-430 3-112 (178)
133 PF05004 IFRD: Interferon-rela 97.8 0.0046 9.9E-08 63.9 21.4 198 380-578 45-260 (309)
134 PLN03076 ARF guanine nucleotid 97.8 0.02 4.4E-07 72.0 30.1 349 69-431 1080-1514(1780)
135 KOG1293 Proteins containing ar 97.8 0.1 2.3E-06 56.8 34.4 463 49-532 22-532 (678)
136 PF08167 RIX1: rRNA processing 97.7 0.0016 3.6E-08 60.2 15.9 135 374-510 21-164 (165)
137 PF05004 IFRD: Interferon-rela 97.7 0.0079 1.7E-07 62.1 22.3 188 345-535 51-259 (309)
138 PF05804 KAP: Kinesin-associat 97.7 0.061 1.3E-06 61.5 30.9 346 34-409 289-651 (708)
139 KOG1525 Sister chromatid cohes 97.7 0.13 2.8E-06 62.4 34.4 330 88-449 59-406 (1266)
140 PF14500 MMS19_N: Dos2-interac 97.7 0.031 6.8E-07 56.0 25.2 240 164-424 4-255 (262)
141 KOG1820 Microtubule-associated 97.7 0.0017 3.7E-08 74.5 17.7 178 310-493 264-447 (815)
142 PF10274 ParcG: Parkin co-regu 97.6 0.00055 1.2E-08 62.4 10.7 95 417-511 36-134 (183)
143 PF05918 API5: Apoptosis inhib 97.6 0.048 1E-06 59.8 27.2 307 37-370 22-349 (556)
144 PF10274 ParcG: Parkin co-regu 97.6 0.00072 1.6E-08 61.7 11.2 95 823-918 37-135 (183)
145 PF11864 DUF3384: Domain of un 97.6 0.19 4E-06 56.0 35.3 296 94-412 5-336 (464)
146 PF13001 Ecm29: Proteasome sta 97.6 0.1 2.2E-06 58.5 30.2 384 6-408 26-489 (501)
147 PF13646 HEAT_2: HEAT repeats; 97.6 0.00031 6.7E-09 57.7 7.8 86 380-485 1-88 (88)
148 KOG2933 Uncharacterized conser 97.6 0.003 6.6E-08 61.7 15.2 148 339-492 90-237 (334)
149 PF08167 RIX1: rRNA processing 97.6 0.0035 7.6E-08 58.0 15.2 136 332-469 20-164 (165)
150 PF05918 API5: Apoptosis inhib 97.5 0.041 9E-07 60.3 24.3 281 118-429 23-320 (556)
151 PF13251 DUF4042: Domain of un 97.5 0.0015 3.3E-08 60.3 11.6 139 352-490 1-175 (182)
152 KOG1822 Uncharacterized conser 97.5 0.55 1.2E-05 58.0 62.0 191 37-236 53-249 (2067)
153 KOG0413 Uncharacterized conser 97.5 0.33 7.2E-06 55.2 42.2 107 158-274 575-681 (1529)
154 KOG2062 26S proteasome regulat 97.4 0.097 2.1E-06 57.6 26.0 127 333-476 554-681 (929)
155 COG5096 Vesicle coat complex, 97.4 0.37 8.1E-06 55.0 42.6 162 16-190 32-196 (757)
156 PF14500 MMS19_N: Dos2-interac 97.4 0.034 7.3E-07 55.7 21.2 232 262-508 12-257 (262)
157 KOG0889 Histone acetyltransfer 97.4 1.1 2.3E-05 59.3 49.6 96 156-258 46-149 (3550)
158 PF02985 HEAT: HEAT repeat; I 97.4 0.00028 6.1E-09 43.7 3.7 30 379-408 1-30 (31)
159 PF08506 Cse1: Cse1; InterPro 97.3 0.24 5.3E-06 52.6 27.3 240 237-484 72-370 (370)
160 PF05536 Neurochondrin: Neuroc 97.3 0.47 1E-05 53.5 31.4 240 33-281 3-264 (543)
161 PF04826 Arm_2: Armadillo-like 97.3 0.011 2.5E-07 58.6 16.1 186 81-278 15-205 (254)
162 COG1413 FOG: HEAT repeat [Ener 97.3 0.15 3.3E-06 54.5 25.9 252 118-448 43-304 (335)
163 KOG2160 Armadillo/beta-catenin 97.3 0.018 3.9E-07 58.2 16.9 146 347-492 93-243 (342)
164 KOG4524 Uncharacterized conser 97.3 0.61 1.3E-05 53.6 44.6 114 398-513 568-686 (1014)
165 KOG2025 Chromosome condensatio 97.2 0.48 1E-05 52.3 34.4 110 72-186 79-190 (892)
166 cd00256 VATPase_H VATPase_H, r 97.2 0.36 7.8E-06 51.8 27.4 69 378-447 353-424 (429)
167 TIGR02270 conserved hypothetic 97.2 0.14 3E-06 55.1 24.2 153 34-233 53-205 (410)
168 KOG2933 Uncharacterized conser 97.2 0.006 1.3E-07 59.7 12.4 157 310-472 99-260 (334)
169 COG1413 FOG: HEAT repeat [Ener 97.2 0.014 3.1E-07 62.4 17.2 185 337-573 43-240 (335)
170 PF11864 DUF3384: Domain of un 97.2 0.58 1.3E-05 52.1 36.5 308 133-466 5-350 (464)
171 KOG1851 Uncharacterized conser 97.2 1 2.2E-05 54.8 33.2 169 315-487 1503-1676(1710)
172 PF12054 DUF3535: Domain of un 97.2 0.11 2.5E-06 56.6 23.7 313 351-673 101-440 (441)
173 PF02985 HEAT: HEAT repeat; I 97.2 0.00067 1.5E-08 42.0 3.9 30 867-896 1-30 (31)
174 KOG4500 Rho/Rac GTPase guanine 97.2 0.2 4.3E-06 51.6 23.0 153 336-490 314-476 (604)
175 KOG2022 Nuclear transport rece 97.1 0.75 1.6E-05 52.3 63.9 328 501-900 462-827 (982)
176 KOG2025 Chromosome condensatio 97.1 0.69 1.5E-05 51.1 42.9 109 332-444 80-189 (892)
177 KOG0889 Histone acetyltransfer 97.0 2.5 5.4E-05 56.2 52.6 525 140-697 699-1305(3550)
178 KOG1517 Guanine nucleotide bin 97.0 0.075 1.6E-06 60.8 19.8 140 351-490 571-733 (1387)
179 PF12231 Rif1_N: Rap1-interact 96.9 0.78 1.7E-05 49.3 32.1 140 353-492 150-306 (372)
180 PF11865 DUF3385: Domain of un 96.9 0.014 3E-07 53.5 11.6 144 334-490 7-158 (160)
181 PF12719 Cnd3: Nuclear condens 96.8 0.17 3.7E-06 52.6 20.5 128 337-471 26-163 (298)
182 TIGR02270 conserved hypothetic 96.8 0.093 2E-06 56.4 18.3 119 339-488 88-206 (410)
183 KOG1949 Uncharacterized conser 96.7 0.5 1.1E-05 52.0 22.9 138 10-147 181-331 (1005)
184 KOG0392 SNF2 family DNA-depend 96.7 2.1 4.5E-05 51.0 47.8 179 114-304 71-261 (1549)
185 PF10521 DUF2454: Protein of u 96.7 0.14 3E-06 52.6 18.4 165 349-513 87-277 (282)
186 PF12719 Cnd3: Nuclear condens 96.7 0.57 1.2E-05 48.8 23.0 155 118-281 26-188 (298)
187 PF13251 DUF4042: Domain of un 96.6 0.021 4.6E-07 52.9 10.7 141 95-238 2-177 (182)
188 PF01603 B56: Protein phosphat 96.6 0.041 9E-07 59.7 14.7 236 3-246 133-381 (409)
189 KOG2062 26S proteasome regulat 96.6 0.039 8.5E-07 60.5 13.7 157 338-514 520-678 (929)
190 PF13001 Ecm29: Proteasome sta 96.5 1.9 4.2E-05 48.4 29.8 176 314-495 252-449 (501)
191 KOG2160 Armadillo/beta-catenin 96.5 1.2 2.6E-05 45.6 23.0 177 315-491 99-284 (342)
192 PF11865 DUF3385: Domain of un 96.5 0.03 6.4E-07 51.4 10.5 149 718-895 8-157 (160)
193 PF05536 Neurochondrin: Neuroc 96.4 2.3 5E-05 48.1 37.3 181 352-538 72-266 (543)
194 PF08064 UME: UME (NUC010) dom 96.4 0.034 7.4E-07 46.9 9.6 95 414-510 6-105 (107)
195 COG5116 RPN2 26S proteasome re 96.4 0.055 1.2E-06 57.4 12.8 155 339-513 518-674 (926)
196 KOG2549 Transcription initiati 96.3 0.41 8.8E-06 51.4 18.8 156 664-854 206-370 (576)
197 KOG2137 Protein kinase [Signal 96.3 1.1 2.3E-05 50.2 22.4 172 289-471 346-519 (700)
198 KOG1525 Sister chromatid cohes 96.3 4.6 0.0001 49.7 50.9 337 214-575 58-405 (1266)
199 PF08064 UME: UME (NUC010) dom 96.2 0.082 1.8E-06 44.6 11.1 98 371-470 4-106 (107)
200 smart00802 UME Domain in UVSB 96.1 0.094 2E-06 43.8 10.7 98 370-469 3-105 (107)
201 KOG1048 Neural adherens juncti 96.1 1.2 2.6E-05 50.4 21.9 116 116-236 230-350 (717)
202 KOG1517 Guanine nucleotide bin 96.0 0.29 6.4E-06 56.3 17.1 223 176-409 486-734 (1387)
203 KOG2149 Uncharacterized conser 96.0 0.13 2.9E-06 52.9 13.4 131 380-510 60-191 (393)
204 KOG0567 HEAT repeat-containing 96.0 0.69 1.5E-05 44.8 16.9 60 503-574 220-279 (289)
205 PF03224 V-ATPase_H_N: V-ATPas 96.0 0.27 5.8E-06 51.7 16.0 195 35-239 55-273 (312)
206 KOG4500 Rho/Rac GTPase guanine 96.0 2.5 5.5E-05 44.0 28.6 72 377-448 314-390 (604)
207 PF04118 Dopey_N: Dopey, N-ter 95.9 0.55 1.2E-05 48.1 17.4 156 346-503 20-179 (307)
208 smart00802 UME Domain in UVSB 95.8 0.074 1.6E-06 44.4 8.6 94 413-508 5-103 (107)
209 KOG0946 ER-Golgi vesicle-tethe 95.8 4.7 0.0001 45.6 41.5 196 35-237 22-243 (970)
210 PF08767 CRM1_C: CRM1 C termin 95.7 0.49 1.1E-05 49.5 16.7 146 523-702 46-198 (319)
211 PF10363 DUF2435: Protein of u 95.7 0.11 2.4E-06 42.0 9.3 74 826-901 5-78 (92)
212 KOG1243 Protein kinase [Genera 95.7 0.22 4.8E-06 55.1 14.3 188 289-489 327-515 (690)
213 KOG1837 Uncharacterized conser 95.7 7.8 0.00017 47.7 32.0 98 802-904 1523-1620(1621)
214 COG5095 TAF6 Transcription ini 95.7 1 2.2E-05 44.1 16.7 160 664-852 196-357 (450)
215 PF01603 B56: Protein phosphat 95.6 1.3 2.7E-05 48.3 19.9 233 206-449 133-371 (409)
216 KOG1243 Protein kinase [Genera 95.6 0.27 5.9E-06 54.4 14.2 189 246-452 329-519 (690)
217 COG5218 YCG1 Chromosome conden 95.5 4.6 0.0001 43.9 35.4 169 2-190 90-267 (885)
218 KOG2149 Uncharacterized conser 95.4 0.34 7.3E-06 50.1 13.3 125 345-469 66-191 (393)
219 PF08623 TIP120: TATA-binding 95.3 0.084 1.8E-06 48.1 7.8 96 373-471 4-117 (169)
220 KOG3687 Tuberin - Rap/ran-GTPa 95.2 8.2 0.00018 44.7 25.8 51 546-596 649-700 (1697)
221 COG5116 RPN2 26S proteasome re 95.0 0.8 1.7E-05 49.1 14.9 125 333-474 551-676 (926)
222 PF10363 DUF2435: Protein of u 95.0 0.18 3.9E-06 40.9 8.1 74 379-453 4-77 (92)
223 KOG1837 Uncharacterized conser 94.9 13 0.00029 45.8 34.1 104 474-585 1518-1621(1621)
224 KOG2137 Protein kinase [Signal 94.9 1.6 3.5E-05 48.8 17.7 144 106-259 377-520 (700)
225 COG5218 YCG1 Chromosome conden 94.9 7.3 0.00016 42.5 38.5 173 4-184 12-194 (885)
226 COG5095 TAF6 Transcription ini 94.9 1.6 3.5E-05 42.8 15.4 146 378-533 197-359 (450)
227 PF08767 CRM1_C: CRM1 C termin 94.8 6.1 0.00013 41.4 21.9 140 798-938 91-244 (319)
228 PF12074 DUF3554: Domain of un 94.6 7.4 0.00016 41.5 23.4 210 291-511 21-254 (339)
229 PF10521 DUF2454: Protein of u 94.5 0.55 1.2E-05 48.2 12.6 146 114-260 115-278 (282)
230 PF08623 TIP120: TATA-binding 94.4 0.84 1.8E-05 41.7 11.9 113 581-729 3-115 (169)
231 KOG3961 Uncharacterized conser 94.3 0.17 3.8E-06 46.6 7.3 93 417-509 112-207 (262)
232 PF12530 DUF3730: Protein of u 94.3 6.2 0.00013 39.2 20.4 199 13-221 11-218 (234)
233 COG5098 Chromosome condensatio 94.1 12 0.00026 41.8 36.9 539 1-575 258-1037(1128)
234 cd08050 TAF6 TATA Binding Prot 94.1 2.4 5.1E-05 44.9 16.4 107 735-852 231-338 (343)
235 KOG2549 Transcription initiati 93.9 2.7 6E-05 45.4 16.0 154 314-470 222-393 (576)
236 KOG0567 HEAT repeat-containing 93.8 7.1 0.00015 38.2 18.2 107 353-489 172-280 (289)
237 PF03224 V-ATPase_H_N: V-ATPas 93.7 2.4 5.1E-05 44.6 15.7 106 129-236 68-180 (312)
238 cd03568 VHS_STAM VHS domain fa 93.7 1.5 3.2E-05 39.4 12.0 113 345-465 12-128 (144)
239 KOG2759 Vacuolar H+-ATPase V1 93.7 11 0.00023 39.7 25.8 309 115-448 115-438 (442)
240 smart00638 LPD_N Lipoprotein N 93.5 3.9 8.5E-05 47.5 18.6 153 319-485 376-541 (574)
241 PF14222 MOR2-PAG1_N: Cell mor 93.5 6.3 0.00014 44.6 19.3 102 82-188 133-248 (552)
242 KOG0803 Predicted E3 ubiquitin 93.3 5.7 0.00012 49.1 19.4 258 158-450 40-306 (1312)
243 KOG4199 Uncharacterized conser 93.2 10 0.00023 38.3 23.1 300 346-696 116-442 (461)
244 cd08050 TAF6 TATA Binding Prot 93.1 2.1 4.6E-05 45.3 14.1 125 380-513 180-321 (343)
245 COG5231 VMA13 Vacuolar H+-ATPa 93.1 11 0.00023 37.9 19.8 71 378-449 356-429 (432)
246 PF12726 SEN1_N: SEN1 N termin 93.0 25 0.00054 42.1 31.0 157 79-238 78-246 (727)
247 cd03567 VHS_GGA VHS domain fam 92.9 2.8 6.1E-05 37.2 12.3 111 345-465 13-131 (139)
248 PF12054 DUF3535: Domain of un 92.9 14 0.00029 40.8 20.3 197 314-510 102-363 (441)
249 PF12074 DUF3554: Domain of un 92.9 15 0.00033 39.1 21.4 222 75-305 19-257 (339)
250 PF01347 Vitellogenin_N: Lipop 92.9 1.7 3.6E-05 51.2 14.5 150 319-485 414-585 (618)
251 PF04118 Dopey_N: Dopey, N-ter 92.8 13 0.00029 38.3 22.6 126 353-485 113-250 (307)
252 PF01347 Vitellogenin_N: Lipop 92.6 17 0.00036 42.9 22.4 96 333-445 486-586 (618)
253 COG5231 VMA13 Vacuolar H+-ATPa 92.6 13 0.00027 37.4 19.0 53 354-406 374-427 (432)
254 KOG4199 Uncharacterized conser 92.2 15 0.00032 37.4 31.0 317 115-487 105-442 (461)
255 PF08389 Xpo1: Exportin 1-like 92.1 1.9 4E-05 39.4 10.9 124 316-443 5-148 (148)
256 KOG0413 Uncharacterized conser 91.9 31 0.00067 40.4 50.6 110 377-489 575-685 (1529)
257 PF12530 DUF3730: Protein of u 91.6 16 0.00034 36.4 21.2 203 216-433 11-217 (234)
258 smart00638 LPD_N Lipoprotein N 91.5 8.9 0.00019 44.6 18.2 140 804-955 377-525 (574)
259 cd03568 VHS_STAM VHS domain fa 91.4 2.7 5.9E-05 37.7 10.5 76 418-493 36-114 (144)
260 cd03569 VHS_Hrs_Vps27p VHS dom 91.3 5.5 0.00012 35.7 12.4 75 378-452 41-118 (142)
261 cd03561 VHS VHS domain family; 91.0 4.5 9.7E-05 35.9 11.6 88 377-464 36-130 (133)
262 PF00514 Arm: Armadillo/beta-c 91.0 0.43 9.4E-06 31.8 4.0 29 866-894 12-40 (41)
263 KOG2122 Beta-catenin-binding p 90.9 44 0.00096 41.4 21.9 75 864-941 528-604 (2195)
264 KOG3961 Uncharacterized conser 90.8 1.1 2.4E-05 41.6 7.4 89 825-914 115-206 (262)
265 KOG1949 Uncharacterized conser 90.4 35 0.00077 38.5 28.5 149 209-366 177-331 (1005)
266 PF00514 Arm: Armadillo/beta-c 90.3 0.52 1.1E-05 31.5 3.9 29 378-406 12-40 (41)
267 KOG0929 Guanine nucleotide exc 90.2 17 0.00037 45.4 18.6 230 89-331 1047-1301(1514)
268 KOG1848 Uncharacterized conser 90.2 55 0.0012 40.3 25.2 255 91-366 854-1132(1610)
269 KOG3036 Protein involved in ce 90.0 5 0.00011 38.6 11.1 113 825-938 125-247 (293)
270 KOG2842 Interferon-related pro 89.9 27 0.00058 36.3 19.1 207 347-553 70-296 (427)
271 PF12333 Ipi1_N: Rix1 complex 89.5 3.5 7.5E-05 34.5 9.0 63 369-431 2-65 (102)
272 COG5234 CIN1 Beta-tubulin fold 89.2 18 0.00038 40.6 16.0 242 334-591 243-506 (993)
273 PF00790 VHS: VHS domain; Int 89.2 6.8 0.00015 35.2 11.4 93 444-537 27-122 (140)
274 PF12830 Nipped-B_C: Sister ch 89.2 17 0.00037 34.6 14.7 143 820-971 4-181 (187)
275 PF04078 Rcd1: Cell differenti 89.1 4.5 9.7E-05 39.8 10.5 99 841-939 112-219 (262)
276 PF14664 RICTOR_N: Rapamycin-i 89.1 36 0.00077 36.6 18.7 236 333-575 21-269 (371)
277 PF12830 Nipped-B_C: Sister ch 88.8 22 0.00048 33.9 16.6 75 335-413 6-80 (187)
278 smart00288 VHS Domain present 88.5 9.9 0.00021 33.7 11.7 80 457-537 34-115 (133)
279 cd03561 VHS VHS domain family; 88.3 5.5 0.00012 35.4 10.1 76 418-493 36-116 (133)
280 smart00288 VHS Domain present 88.2 12 0.00025 33.3 12.0 75 378-452 37-115 (133)
281 cd03572 ENTH_epsin_related ENT 87.8 12 0.00026 32.3 11.1 73 376-448 36-119 (122)
282 PF08146 BP28CT: BP28CT (NUC21 87.7 5.6 0.00012 36.2 9.8 90 810-899 49-151 (153)
283 PF09324 DUF1981: Domain of un 86.9 3.2 7E-05 33.3 6.9 70 157-231 15-84 (86)
284 PF09324 DUF1981: Domain of un 86.7 3 6.5E-05 33.5 6.7 70 75-144 14-85 (86)
285 cd03567 VHS_GGA VHS domain fam 86.6 10 0.00022 33.8 10.5 75 418-492 37-119 (139)
286 KOG0803 Predicted E3 ubiquitin 86.5 79 0.0017 39.7 21.1 107 341-447 45-152 (1312)
287 PF08713 DNA_alkylation: DNA a 86.4 14 0.00031 36.2 13.0 76 336-417 119-194 (213)
288 PF14868 DUF4487: Domain of un 86.3 65 0.0014 36.5 24.0 56 314-369 495-555 (559)
289 PF12231 Rif1_N: Rap1-interact 85.7 57 0.0012 35.3 35.5 317 350-749 6-351 (372)
290 cd03565 VHS_Tom1 VHS domain fa 85.6 18 0.00039 32.4 11.7 113 345-465 13-133 (141)
291 KOG2256 Predicted protein invo 85.3 71 0.0015 36.1 18.5 203 392-596 256-477 (661)
292 cd03569 VHS_Hrs_Vps27p VHS dom 85.2 16 0.00036 32.7 11.3 79 457-537 38-118 (142)
293 PF11701 UNC45-central: Myosin 84.5 12 0.00026 34.4 10.5 142 38-186 6-156 (157)
294 PF11698 V-ATPase_H_C: V-ATPas 84.4 5.3 0.00011 34.1 7.2 70 378-448 43-115 (119)
295 PF14668 RICTOR_V: Rapamycin-i 84.4 4.5 9.8E-05 31.0 6.2 55 353-409 3-60 (73)
296 KOG2213 Apoptosis inhibitor 5/ 84.4 57 0.0012 34.2 21.0 53 642-698 38-90 (460)
297 PF11698 V-ATPase_H_C: V-ATPas 84.2 4.4 9.5E-05 34.5 6.7 68 339-407 45-115 (119)
298 PF11701 UNC45-central: Myosin 84.1 12 0.00026 34.4 10.2 129 314-444 20-155 (157)
299 KOG2081 Nuclear transport regu 83.8 76 0.0016 35.1 44.3 323 378-766 199-552 (559)
300 PF12765 Cohesin_HEAT: HEAT re 83.7 1.7 3.7E-05 29.1 3.3 40 361-402 3-42 (42)
301 PF00790 VHS: VHS domain; Int 83.7 33 0.00071 30.8 13.9 75 377-451 41-121 (140)
302 PF08161 NUC173: NUC173 domain 83.5 43 0.00093 32.1 14.5 57 523-580 19-75 (198)
303 KOG1848 Uncharacterized conser 83.5 1.3E+02 0.0028 37.5 25.4 237 430-700 853-1134(1610)
304 KOG0946 ER-Golgi vesicle-tethe 83.2 96 0.0021 35.9 39.4 275 2-278 21-346 (970)
305 PF08713 DNA_alkylation: DNA a 82.9 49 0.0011 32.3 15.1 153 17-191 33-186 (213)
306 PF11919 DUF3437: Domain of un 81.9 2.1 4.6E-05 34.5 3.8 61 352-413 4-64 (90)
307 cd03565 VHS_Tom1 VHS domain fa 80.9 33 0.00071 30.8 11.4 81 457-537 35-119 (141)
308 PF07571 DUF1546: Protein of u 80.3 5.9 0.00013 32.3 6.0 59 309-367 16-79 (92)
309 KOG2038 CAATT-binding transcri 80.3 1.2E+02 0.0026 35.0 30.7 109 156-278 301-409 (988)
310 PF11707 Npa1: Ribosome 60S bi 80.0 86 0.0019 33.2 16.6 153 339-491 58-239 (330)
311 PLN03205 ATR interacting prote 79.6 84 0.0018 32.8 15.3 203 97-301 302-548 (652)
312 KOG2199 Signal transducing ada 79.2 28 0.0006 36.2 11.3 99 345-451 20-121 (462)
313 cd00197 VHS_ENTH_ANTH VHS, ENT 78.4 35 0.00077 29.3 10.7 74 333-406 33-114 (115)
314 COG5657 CSE1 CAS/CSE protein i 78.3 1.5E+02 0.0033 35.1 48.5 105 255-367 44-153 (947)
315 PF14631 FancD2: Fanconi anaem 78.2 2.2E+02 0.0048 36.9 30.2 97 332-432 430-526 (1426)
316 PF08569 Mo25: Mo25-like; Int 78.2 96 0.0021 32.7 24.7 185 49-237 89-285 (335)
317 PF03542 Tuberin: Tuberin; In 78.1 63 0.0014 34.3 14.1 94 392-491 211-305 (356)
318 cd03572 ENTH_epsin_related ENT 78.0 12 0.00026 32.2 7.4 75 458-532 36-118 (122)
319 KOG2011 Sister chromatid cohes 77.9 1.7E+02 0.0036 35.8 18.7 128 354-483 262-393 (1048)
320 PF12333 Ipi1_N: Rix1 complex 77.9 9.9 0.00021 31.8 6.8 61 412-472 4-65 (102)
321 PF07571 DUF1546: Protein of u 77.8 8.1 0.00018 31.5 6.1 60 389-448 17-78 (92)
322 PF12726 SEN1_N: SEN1 N termin 77.1 1.7E+02 0.0038 35.1 38.0 129 459-589 119-257 (727)
323 KOG1222 Kinesin associated pro 75.9 1.2E+02 0.0026 32.7 27.5 93 136-234 281-373 (791)
324 PF12765 Cohesin_HEAT: HEAT re 75.4 4.9 0.00011 26.9 3.5 40 142-184 3-42 (42)
325 KOG1810 Cell cycle-associated 75.4 1.6E+02 0.0034 36.4 17.4 162 289-450 776-968 (1417)
326 PF03542 Tuberin: Tuberin; In 75.3 73 0.0016 33.8 13.7 152 116-279 139-304 (356)
327 KOG2122 Beta-catenin-binding p 74.2 2.5E+02 0.0054 35.5 21.6 72 418-489 529-601 (2195)
328 PF08569 Mo25: Mo25-like; Int 73.9 1.2E+02 0.0027 31.9 26.4 109 342-450 169-285 (335)
329 PF04510 DUF577: Family of unk 73.6 17 0.00036 33.2 7.3 89 419-513 3-96 (174)
330 PF12783 Sec7_N: Guanine nucle 73.5 77 0.0017 29.5 12.5 99 391-489 35-146 (168)
331 PF04388 Hamartin: Hamartin pr 73.2 56 0.0012 38.3 13.6 92 117-215 69-161 (668)
332 smart00185 ARM Armadillo/beta- 73.1 5.1 0.00011 26.4 3.3 28 379-406 13-40 (41)
333 PF11935 DUF3453: Domain of un 73.0 1.1E+02 0.0023 30.7 14.5 128 168-302 2-163 (239)
334 PF14664 RICTOR_N: Rapamycin-i 72.9 1.4E+02 0.0031 32.1 21.6 171 314-489 83-269 (371)
335 PF04388 Hamartin: Hamartin pr 71.9 50 0.0011 38.7 12.8 75 802-876 87-162 (668)
336 KOG2973 Uncharacterized conser 71.7 32 0.00069 34.7 9.3 103 342-448 8-111 (353)
337 PF08161 NUC173: NUC173 domain 71.4 99 0.0022 29.7 13.6 55 646-700 18-72 (198)
338 cd00197 VHS_ENTH_ANTH VHS, ENT 71.2 66 0.0014 27.6 11.5 71 376-446 35-113 (115)
339 smart00185 ARM Armadillo/beta- 70.8 6.1 0.00013 26.0 3.3 28 867-894 13-40 (41)
340 KOG1851 Uncharacterized conser 69.9 3.2E+02 0.0069 34.9 35.7 175 392-575 1501-1678(1710)
341 cd06561 AlkD_like A new struct 69.6 18 0.00038 34.9 7.5 72 340-416 108-179 (197)
342 PF08146 BP28CT: BP28CT (NUC21 69.1 90 0.0019 28.5 11.3 35 802-836 86-120 (153)
343 KOG3687 Tuberin - Rap/ran-GTPa 68.8 2.6E+02 0.0056 33.5 29.9 37 559-595 486-522 (1697)
344 KOG1048 Neural adherens juncti 68.2 2.4E+02 0.0052 32.9 28.4 401 2-449 232-685 (717)
345 COG5369 Uncharacterized conser 67.8 1.5E+02 0.0033 32.6 13.9 92 802-896 408-503 (743)
346 COG5537 IRR1 Cohesin [Cell div 67.5 2.2E+02 0.0047 32.1 16.4 115 372-488 268-385 (740)
347 KOG0929 Guanine nucleotide exc 67.5 3E+02 0.0065 35.3 18.1 242 347-596 1047-1320(1514)
348 KOG2085 Serine/threonine prote 67.4 1.8E+02 0.0038 31.0 17.5 93 418-510 298-393 (457)
349 cd07064 AlkD_like_1 A new stru 66.9 44 0.00096 32.5 9.5 72 338-415 116-187 (208)
350 COG5369 Uncharacterized conser 66.7 10 0.00022 41.0 5.2 112 378-489 431-545 (743)
351 PF12783 Sec7_N: Guanine nucle 66.5 83 0.0018 29.3 11.0 73 377-449 72-147 (168)
352 PF14225 MOR2-PAG1_C: Cell mor 66.0 1.6E+02 0.0034 29.9 21.8 140 338-492 112-257 (262)
353 PF10350 DUF2428: Putative dea 65.7 1.2E+02 0.0026 30.6 12.7 153 351-503 61-242 (255)
354 PF06685 DUF1186: Protein of u 65.5 94 0.002 31.0 11.3 99 841-956 58-161 (249)
355 smart00567 EZ_HEAT E-Z type HE 63.6 9.6 0.00021 23.1 2.8 16 351-366 1-16 (30)
356 COG4912 Predicted DNA alkylati 61.9 59 0.0013 31.2 8.7 81 323-409 103-185 (222)
357 KOG2973 Uncharacterized conser 61.6 1.9E+02 0.0042 29.5 18.9 95 262-367 16-112 (353)
358 KOG1222 Kinesin associated pro 61.5 2.4E+02 0.0053 30.6 24.6 117 394-512 279-397 (791)
359 PF12397 U3snoRNP10: U3 small 60.9 70 0.0015 27.8 8.8 74 862-940 2-76 (121)
360 PF11841 DUF3361: Domain of un 60.7 79 0.0017 28.9 8.9 74 419-492 58-134 (160)
361 PF12397 U3snoRNP10: U3 small 59.6 41 0.00089 29.2 7.1 73 375-450 3-76 (121)
362 KOG2085 Serine/threonine prote 59.4 2.5E+02 0.0054 30.0 16.3 240 349-596 144-393 (457)
363 cd00864 PI3Ka Phosphoinositide 58.5 1.5E+02 0.0032 27.1 11.0 76 6-91 42-118 (152)
364 KOG1087 Cytosolic sorting prot 58.1 1.3E+02 0.0029 33.1 11.9 101 344-452 12-116 (470)
365 COG5209 RCD1 Uncharacterized p 57.7 32 0.0007 32.7 6.2 57 840-896 161-219 (315)
366 KOG2213 Apoptosis inhibitor 5/ 57.1 2.6E+02 0.0057 29.6 21.7 53 393-449 39-91 (460)
367 PF14225 MOR2-PAG1_C: Cell mor 57.0 2.2E+02 0.0049 28.8 19.9 127 94-238 130-257 (262)
368 PF03130 HEAT_PBS: PBS lyase H 56.9 11 0.00023 22.3 2.0 14 394-407 1-14 (27)
369 KOG3678 SARM protein (with ste 56.7 2.8E+02 0.0062 29.9 17.3 22 346-367 316-337 (832)
370 PF05327 RRN3: RNA polymerase 56.3 3.4E+02 0.0074 31.4 15.6 131 843-983 54-197 (563)
371 PF11919 DUF3437: Domain of un 54.3 38 0.00081 27.5 5.3 55 644-699 5-59 (90)
372 PF14631 FancD2: Fanconi anaem 53.7 6.4E+02 0.014 33.0 29.1 114 413-533 429-542 (1426)
373 cd00872 PI3Ka_I Phosphoinositi 53.5 1.9E+02 0.0042 26.9 11.2 67 15-91 51-118 (171)
374 PF11707 Npa1: Ribosome 60S bi 52.9 3.1E+02 0.0067 29.1 21.7 76 208-283 58-148 (330)
375 KOG3036 Protein involved in ce 52.3 2.4E+02 0.0053 27.8 13.6 138 50-189 92-247 (293)
376 KOG2199 Signal transducing ada 52.0 1.2E+02 0.0026 31.9 9.5 75 336-410 44-121 (462)
377 PF14868 DUF4487: Domain of un 50.9 4.3E+02 0.0094 30.2 26.6 97 314-412 243-340 (559)
378 PF06685 DUF1186: Protein of u 49.7 2.8E+02 0.0061 27.7 18.0 154 332-512 30-196 (249)
379 PF11841 DUF3361: Domain of un 48.7 2.2E+02 0.0047 26.1 10.9 94 97-193 32-135 (160)
380 PF10350 DUF2428: Putative dea 48.0 3.1E+02 0.0067 27.7 14.5 74 806-879 171-253 (255)
381 PF11935 DUF3453: Domain of un 46.5 3.1E+02 0.0068 27.3 19.7 122 387-512 2-164 (239)
382 cd03562 CID CID (CTD-Interacti 45.5 1.1E+02 0.0024 26.1 7.5 63 821-884 34-97 (114)
383 smart00145 PI3Ka Phosphoinosit 44.8 2.8E+02 0.0061 26.3 10.7 34 49-90 89-122 (184)
384 KOG2256 Predicted protein invo 44.5 5.4E+02 0.012 29.5 18.2 61 350-410 394-460 (661)
385 KOG2229 Protein required for a 43.7 4.9E+02 0.011 28.8 23.4 127 219-361 33-161 (616)
386 KOG1877 Putative transmembrane 43.6 6.4E+02 0.014 30.1 21.9 320 646-977 74-423 (819)
387 COG5221 DOP1 Dopey and related 43.5 6.6E+02 0.014 30.8 14.6 120 114-252 32-151 (1618)
388 PF01417 ENTH: ENTH domain; I 43.3 2E+02 0.0043 25.1 8.8 92 311-405 15-119 (125)
389 PF12612 TFCD_C: Tubulin foldi 43.1 3.1E+02 0.0066 26.3 13.8 154 73-235 2-158 (193)
390 PF04078 Rcd1: Cell differenti 42.4 2.2E+02 0.0047 28.6 9.4 94 356-449 69-169 (262)
391 cd03562 CID CID (CTD-Interacti 40.3 2.3E+02 0.0051 24.1 9.0 68 416-483 34-102 (114)
392 KOG1087 Cytosolic sorting prot 40.3 1.7E+02 0.0037 32.3 9.3 98 90-193 16-116 (470)
393 cd00870 PI3Ka_III Phosphoinosi 39.5 3.2E+02 0.0069 25.4 10.9 66 16-91 59-125 (166)
394 PF01465 GRIP: GRIP domain; I 38.2 92 0.002 21.4 4.5 36 74-110 3-38 (46)
395 PF12243 CTK3: CTD kinase subu 35.5 2.5E+02 0.0055 25.1 8.0 80 380-468 10-92 (139)
396 PF09759 Atx10homo_assoc: Spin 35.3 1.8E+02 0.004 24.3 6.6 55 355-410 4-62 (102)
397 PF14911 MMS22L_C: S-phase gen 33.4 6.4E+02 0.014 27.1 20.8 204 374-578 65-313 (373)
398 PF07539 DRIM: Down-regulated 32.4 3.7E+02 0.0081 24.1 8.8 30 157-187 15-44 (141)
399 PF00613 PI3Ka: Phosphoinositi 32.2 2.6E+02 0.0056 26.5 8.2 19 72-90 105-123 (184)
400 PF05997 Nop52: Nucleolar prot 32.1 2.6E+02 0.0057 27.4 8.5 86 423-508 4-93 (217)
401 COG5110 RPN1 26S proteasome re 31.5 7.8E+02 0.017 27.6 13.7 217 336-571 449-666 (881)
402 PF14961 BROMI: Broad-minded p 31.2 1.1E+03 0.023 29.9 14.2 139 159-303 161-316 (1296)
403 COG5537 IRR1 Cohesin [Cell div 30.8 8.5E+02 0.018 27.8 16.5 153 238-409 265-424 (740)
404 PF14222 MOR2-PAG1_N: Cell mor 30.7 8.8E+02 0.019 27.9 26.8 193 682-896 144-347 (552)
405 PF14668 RICTOR_V: Rapamycin-i 30.7 1.6E+02 0.0034 22.9 5.2 53 395-449 4-59 (73)
406 cd00872 PI3Ka_I Phosphoinositi 30.3 2E+02 0.0044 26.8 6.9 78 117-212 38-115 (171)
407 PF14838 INTS5_C: Integrator c 29.9 9.8E+02 0.021 28.2 23.2 92 155-251 310-405 (696)
408 PF14911 MMS22L_C: S-phase gen 29.7 7.3E+02 0.016 26.7 25.1 44 661-704 61-104 (373)
409 cd04375 RhoGAP_DLC1 RhoGAP_DLC 29.6 5.1E+02 0.011 25.4 10.1 132 844-981 74-211 (220)
410 KOG4646 Uncharacterized conser 29.6 3.2E+02 0.0069 24.2 7.2 111 337-447 58-169 (173)
411 PF14228 MOR2-PAG1_mid: Cell m 28.7 1.3E+03 0.028 29.3 28.0 57 841-897 932-988 (1120)
412 PF14676 FANCI_S2: FANCI solen 28.1 4.4E+02 0.0095 24.2 8.6 105 117-232 54-158 (158)
413 PF09759 Atx10homo_assoc: Spin 27.6 2.1E+02 0.0046 23.9 5.8 57 395-452 3-63 (102)
414 PF14961 BROMI: Broad-minded p 27.5 1.9E+02 0.0041 35.7 7.6 73 81-153 164-237 (1296)
415 PF10165 Ric8: Guanine nucleot 27.5 9E+02 0.019 27.0 18.4 318 138-459 1-348 (446)
416 smart00755 Grip golgin-97, Ran 26.0 1.7E+02 0.0037 20.2 4.2 33 76-110 4-36 (46)
417 PF08324 PUL: PUL domain; Int 25.0 7.4E+02 0.016 25.2 13.4 102 346-447 119-230 (268)
418 cd04379 RhoGAP_SYD1 RhoGAP_SYD 24.8 3.2E+02 0.0069 26.6 7.6 97 844-942 75-171 (207)
419 PF04869 Uso1_p115_head: Uso1 24.6 8.3E+02 0.018 25.6 11.5 139 349-488 50-230 (312)
420 cd06561 AlkD_like A new struct 24.1 6.3E+02 0.014 24.0 16.4 89 91-191 84-172 (197)
421 cd00870 PI3Ka_III Phosphoinosi 22.9 3.3E+02 0.0071 25.3 6.9 33 172-212 90-122 (166)
422 cd00869 PI3Ka_II Phosphoinosit 22.9 6.3E+02 0.014 23.6 11.0 11 32-42 36-46 (169)
423 PF04869 Uso1_p115_head: Uso1 22.8 7.6E+02 0.016 25.9 10.3 20 390-409 50-69 (312)
424 smart00582 RPR domain present 22.7 5E+02 0.011 22.3 8.6 61 383-452 5-65 (121)
425 PF14663 RasGEF_N_2: Rapamycin 22.0 1.4E+02 0.003 25.7 4.1 33 377-409 7-39 (115)
426 cd04377 RhoGAP_myosin_IX RhoGA 21.7 6.9E+02 0.015 23.7 9.4 97 843-944 68-164 (186)
427 cd07064 AlkD_like_1 A new stru 21.5 7.5E+02 0.016 24.0 19.4 155 16-191 25-181 (208)
428 PF13925 Katanin_con80: con80 21.5 1.9E+02 0.0042 26.8 5.2 59 99-158 46-109 (164)
429 KOG2999 Regulator of Rac1, req 21.2 1.2E+03 0.026 26.3 13.1 143 5-150 85-245 (713)
430 KOG3678 SARM protein (with ste 20.9 1.1E+03 0.024 25.7 19.5 62 346-408 273-337 (832)
431 PF10193 Telomere_reg-2: Telom 20.8 2.3E+02 0.005 24.3 5.1 74 422-498 6-88 (114)
432 PF10193 Telomere_reg-2: Telom 20.6 4.1E+02 0.0089 22.8 6.6 66 868-933 5-77 (114)
433 cd04374 RhoGAP_Graf RhoGAP_Gra 20.5 4.8E+02 0.01 25.2 7.8 91 843-938 87-177 (203)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-117 Score=963.44 Aligned_cols=976 Identities=36% Similarity=0.585 Sum_probs=862.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
.+.+.++++.+.||||++|++||+.|+.....+...+.|.+++.+++++++|++|++++||.+.++|+.++.+.++.||.
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks 82 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS 82 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 57899999999999999999999999877666568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 001945 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (992)
Q Consensus 82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~ 161 (992)
.++..+.+|+.+.||+++|++++.+++.++|+ .||+++++++++.+|+++..|+.|+.+|..+.+.++..+.+|+..+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhcccC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
+++.+++++ ++..||..|+++++.++.+.+ ++.....+..++|.++..+...++.++.+....++++|.++++..|++
T Consensus 162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 999999999 444499999999999999984 456788899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhc-CChHHHHHHHhhhhccCCCC---------CCC
Q 001945 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED 310 (992)
Q Consensus 241 ~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l~~~~~~---------~~d 310 (992)
+++++..+++++++++.|++.++.+|..|++++.+++++.|.+.++. .+..++++.++..|++.++| |+|
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 99999999999999999999999999999999999999988888764 46778999999998876544 223
Q ss_pred CCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC
Q 001945 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (992)
++..+...|.+++++++.++| +.++|++++.+...+.|++|+.|+||+++++.+++||.+.+..+++.|++.+++.++|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 335688899999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhc-cccccchHHHHH-HH
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDE-SDEVKEKSYYALAAFCEDMG-EEILPFLDPLMG-KL 465 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~-~l 465 (992)
+||+||++|+.++|+++..+.+.++.+++ .+.|.++..+.++ +++|+.+|+.++.++.+.++ +.+.||++.+++ .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 5556778888776 47999999999999999985 457899999999 56
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhh-hHhHHHHHHHHHHHHHhhchhhccCCh
Q 001945 466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED-LRSRARATELLGLVAESVGRARMEPIL 544 (992)
Q Consensus 466 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (992)
..+++++.+.+++.++.+|++++.++++.|.|||+.+||.|++++.+.++++ ..+|+++++|++.++.++|++.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 6666777899999999999999999999999999999999999999877554 457999999999999999999999999
Q ss_pred HHHHHHHHhc---cCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCC
Q 001945 545 PPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (992)
Q Consensus 545 ~~i~~~l~~~---l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (992)
.++++.+... ..+++...|++.+.+|++||+++|++|.||+|.++|.++..++.+++... +++++.+..+...+|.
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-~d~~d~e~~~~~~~~e 639 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-SDEEDEEEEQDLDGWE 639 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-cCchhhhhccccccch
Confidence 9999999886 34557789999999999999999999999999999999999988765432 2344444443344432
Q ss_pred CCchhhhhcccc-ceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHh-cccCCChhHHHHHHHHHHHHHHH
Q 001945 622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVR-HASYFHEDVRYQAVFALKNILTA 699 (992)
Q Consensus 622 ~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~a~~~l~~l~~~ 699 (992)
.. +...+ .++++|+.+++|..|+.+|+.++..++..|.||++++.+..+. +..+++++||.+|+++++.++.+
T Consensus 640 ~~-----~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~ 714 (1075)
T KOG2171|consen 640 VV-----ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC 714 (1075)
T ss_pred hh-----ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 11 11112 6899999999999999999999999999999999999994444 45579999999999999999999
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHhhh-hh
Q 001945 700 AHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV-EPYMSRLVDATLLLLREE-ST 777 (992)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~l~~~l~~~l~~~-~~ 777 (992)
...+. ..+|..++..+..+++.+...+..|+++++...++++++++++.+|+.++ .+....+...+...+... ..
T Consensus 715 ~~~A~---~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~ 791 (1075)
T KOG2171|consen 715 ALKAC---QGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKR 791 (1075)
T ss_pred HHHHh---ccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 87655 34677899999999999999999999999999999999999999997765 445666555555443322 22
Q ss_pred hcCC-C----CCCCC-CCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHH
Q 001945 778 CQQP-D----NDSDI-EDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAE 851 (992)
Q Consensus 778 ~~~~-~----~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~ 851 (992)
++.. + +++|. ++++.++.+..+++.+.+.+..+++..|+.|.+.|..++|.+.+.+.++.+.. |.+|++++++
T Consensus 792 ~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d 870 (1075)
T KOG2171|consen 792 MQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDD 870 (1075)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHH
Confidence 2211 1 11111 11222356677899999999999999999999999999999999999888876 9999999999
Q ss_pred HHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCC----CCCChhhHh
Q 001945 852 VARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGD----SEPDDAVRD 927 (992)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~----~~~~~~~~~ 927 (992)
+++++|+...+|...++|.++..+.+.+++||++|+|++|.+++++|+.+.+.....++.|...+.. .+++..+++
T Consensus 871 ~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ate 950 (1075)
T KOG2171|consen 871 LIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATE 950 (1075)
T ss_pred HHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999998777666666666666554 367789999
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCcccccCCC
Q 001945 928 NAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQRN 989 (992)
Q Consensus 928 n~~~~l~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~ 989 (992)
|+++|++|++.++|..+++++++|.|+++||...|.||+..+|++||.|+++|||.|+|.+|
T Consensus 951 Na~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen 951 NAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred HHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999885
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-66 Score=523.03 Aligned_cols=750 Identities=20% Similarity=0.321 Sum_probs=608.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~--~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
+++.++|++.+|||+++|+.+...+.++...|+|-.+|..++.+ +.+..+|..|+.+||+.+..+|..++++.+.++|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 67889999999999999999999999999999999999999975 4578889999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccc-----c
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-----P 155 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-----~ 155 (992)
...++.+. ++++.+|.....+|..|++..+- ..||+++|.+.+++.+++.+..++|+.+|.++++..++.+. .
T Consensus 93 s~~l~~lg-d~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 93 SECLHGLG-DASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHhhcc-CchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 99999999 58899999999999999987665 58999999999999999999999999999999998876543 4
Q ss_pred cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 235 (992)
-++-++|-+....++ +++.+|..|+.|+..++..... .+-..+..+++.++...+++++++|...|..|.-+.+
T Consensus 171 pl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~q-----al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQ-----ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred chHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcH-----HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566788999999999 8999999999999998776532 2455678888888888888999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh--HhHhhhcCChHHHHHHHhhhhccCCC-------
Q 001945 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK--YNSLKKHKLVIPILQVMCPLLAESNE------- 306 (992)
Q Consensus 236 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~~~~~il~~l~~~l~~~~~------- 306 (992)
..+..+-+|+..++++|+....+. ++++...|++||.++++.. +..+ .+|+..++|+++.-|...++
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L--~p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVL--QPYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHH--HHHHHHHHHHHHccCccccccHHHhcC
Confidence 999999999999999999876554 7889999999999999753 1122 24788888888876542110
Q ss_pred --------------------------------CCCCC----------CCchHHHHHHHHHHHHHHcchhchHHHHHHHHh
Q 001945 307 --------------------------------AGEDD----------DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV 344 (992)
Q Consensus 307 --------------------------------~~~d~----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 344 (992)
+|+|| +|+.|++.+.+++.++..+++++++.++|.+.+
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE 400 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00111 399999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~ 423 (992)
.+.+++|++|++++.++|.++|||.+.+.++++.++|.++++|+|..+.||..+||+|++++.+...+ -.+++..++..
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987433 34688999999
Q ss_pred HHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc--ccHHH
Q 001945 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAER 501 (992)
Q Consensus 424 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~ 501 (992)
+++.+-|.+.+||++||+++..+-+..++++.||++.+++.|...++....+=-.-.+.++|+++.++|..+. .|.+-
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998865544344567899999999987654 36777
Q ss_pred HHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCc
Q 001945 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF 581 (992)
Q Consensus 502 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~ 581 (992)
+||-|.+-.+.-++++..+- ..++|++.++.++|. .|.||.+++.+.....++ .+...++.
T Consensus 561 LmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~-gF~P~~~~Vy~Rc~~il~-----------~t~q~~~~------ 621 (885)
T KOG2023|consen 561 LMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGV-GFLPYAQPVYQRCFRILQ-----------KTLQLLAK------ 621 (885)
T ss_pred hccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHH-----------HHHHHHHh------
Confidence 88777666554444333332 245666666655544 555555444443222111 00000000
Q ss_pred cCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcc
Q 001945 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661 (992)
Q Consensus 582 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~ 661 (992)
.+.++.
T Consensus 622 --------------~~~~~~------------------------------------------------------------ 627 (885)
T KOG2023|consen 622 --------------VQQDPT------------------------------------------------------------ 627 (885)
T ss_pred --------------ccCCcc------------------------------------------------------------
Confidence 000000
Q ss_pred cccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHH
Q 001945 662 SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQA 741 (992)
Q Consensus 662 ~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 741 (992)
...+|++...
T Consensus 628 --------------------------------------------------------------------~~~pdkdfiI-- 637 (885)
T KOG2023|consen 628 --------------------------------------------------------------------VEAPDKDFII-- 637 (885)
T ss_pred --------------------------------------------------------------------ccCCCcceEE--
Confidence 0000111111
Q ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHH
Q 001945 742 CTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPI 821 (992)
Q Consensus 742 ~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 821 (992)
+..++++.+++.+|....+.
T Consensus 638 ------------------------------------------------------------~sLDL~SGLaegLg~~ie~L 657 (885)
T KOG2023|consen 638 ------------------------------------------------------------VSLDLLSGLAEGLGSHIEPL 657 (885)
T ss_pred ------------------------------------------------------------EeHHHHhHHHHHhhhchHHH
Confidence 11222222222222222222
Q ss_pred HH--HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc
Q 001945 822 FA--KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE 899 (992)
Q Consensus 822 ~~--~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~ 899 (992)
+. .+...+++++.|..+ .+|.+++..||++.+++.+.+.|+...++|.+...+.....++.+||+|++|.++...+.
T Consensus 658 va~snl~~lll~C~~D~~p-eVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 658 VAQSNLLDLLLQCLQDEVP-EVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL 736 (885)
T ss_pred hhhccHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch
Confidence 21 244556667777666 689999999999999999999999999999999999888899999999999999999999
Q ss_pred chhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCCC--hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHH
Q 001945 900 SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP--LNQVLPVLLKVLPLKEDFEESMAVYNCISTLV 977 (992)
Q Consensus 900 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~~--~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~ 977 (992)
...+|+..++..|..++..+..+..+.+|..-++||+...+|+.+. ++.++..|+..+.-.+|.+|...+|+++|.+|
T Consensus 737 ~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi 816 (885)
T KOG2023|consen 737 KMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMI 816 (885)
T ss_pred hhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHhe
Confidence 8899999999999999987777789999999999999999999884 89999999999999999999999999999999
Q ss_pred hhcCcccccCC
Q 001945 978 LSSNPQLFHQR 988 (992)
Q Consensus 978 ~~~~~~~~~~~ 988 (992)
.-|+..+..+.
T Consensus 817 ~vNp~~vv~~~ 827 (885)
T KOG2023|consen 817 NVNPSGVVSSF 827 (885)
T ss_pred eeCchhhhhhh
Confidence 99998887653
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-57 Score=472.75 Aligned_cols=747 Identities=22% Similarity=0.338 Sum_probs=600.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhh-----------hccc
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKIT-----------GHWA 69 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~--p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~-----------~~~~ 69 (992)
++.++|..++|||+..|+.|+++|+++.++ |.|+..|.+++.+. .++..|..|+..||+.+. .+|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 567889999999999999999999999875 68999999999875 478899999999999973 4799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHH-HHHHHHHHHHHhhhh
Q 001945 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE-HREVALILFSSLTET 148 (992)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~-~~~~al~~l~~l~~~ 148 (992)
.++.|.++++|..++..|.+ +.+..+..++++++.|+..+.|.+.||++++.+.....++.+. ++++++..++.++++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999995 8899999999999999999999999999999999999876654 899999999999998
Q ss_pred hh-hcccccHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 001945 149 IG-QTFRPHFADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (992)
Q Consensus 149 ~~-~~~~~~~~~i~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 226 (992)
+. +.+..+.+.++..+..+.. ..++..||.+|.+||.+..++...+......+++ ++++..+..+.++.+++..+
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~---iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY---IMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce---eeeeeeecccCCcHHHHHHH
Confidence 64 4566777888766666554 5578999999999999988876533333333444 34444455567889999999
Q ss_pred HHHHHHHhcCCccchHHHHHH-HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHh-------Hhhh------c----C
Q 001945 227 FEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN-------SLKK------H----K 288 (992)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~l~~-li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~~------~----~ 288 (992)
+.||..++..+..++.+++.. ++...+..+.++ ++++..++++||+++++..-. .... . .
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999998876 778777777755 899999999999988764321 0000 0 1
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC
Q 001945 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
-++.++|.+++.|.+.++++++|+|++.++|..||..+++..+++++|+++|++.+.+++++|+.|++|.+++|.+.++.
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 23468899999999999888999999999999999999999999999999999999999999999999999999999985
Q ss_pred -HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH--hhhhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 001945 369 -AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 369 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
+..+.+...+.+|.++..+.|++-.||.++.|++|++++.++.... .++..+++.++..++|. |+|...+||++..
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~ 474 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFIS 474 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHH
Confidence 5667777899999999999999999999999999999999865433 47788999999999987 8999999999999
Q ss_pred HHHhhcc---------ccccchHHHHHHHHHHhcC---CCHhHHHHHHHHHHHHHHHhhccCcccHHH----HHHHHHHH
Q 001945 446 FCEDMGE---------EILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQAFIPYAER----VLELLKIF 509 (992)
Q Consensus 446 l~~~~~~---------~~~~~~~~l~~~l~~~l~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~----~~~~l~~~ 509 (992)
+++.+.+ ...|+++.++..|+..... .+..+|..++++++.++...++...+.... ++..|.+.
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987631 2347999999999998766 357899999999999999988776655444 34444444
Q ss_pred Hhc----cChh--hhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC-CCchhhHHHHHHHHHHHHHcccCcc
Q 001945 510 MVL----TNDE--DLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFA 582 (992)
Q Consensus 510 l~~----~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~r~~~~~~~~~i~~~~~~~~~ 582 (992)
++. ..+. ...+......+++.+.+.+++ .+.++.+.+|..+++.++. .+.-+.+.++.+++.++..+|..|.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 441 1111 123445667888888888988 7889999999999998886 4556889999999999999999999
Q ss_pred CchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhccc
Q 001945 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (992)
Q Consensus 583 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~ 662 (992)
.|+|.+.|.|...++... ...+...|....|.++..++..
T Consensus 634 kym~~f~pyL~~gL~n~~----------------------------------------e~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQ----------------------------------------EYQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred HHHHHHHHHHHHHhhcch----------------------------------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998773210 0125678999999999999999
Q ss_pred ccchHHHHHHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCCh------
Q 001945 663 YAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDD------ 734 (992)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 734 (992)
+.||...++..+++.+.. .+.+++-..+.+++.|.-+++.. ..+|++.+++.+.+.-.-+.|
T Consensus 674 i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~----------F~~Yl~~vm~llq~as~~~~d~~~~~~ 743 (859)
T KOG1241|consen 674 ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD----------FEPYLEMVMPLLQQASSVQTDPADDSM 743 (859)
T ss_pred hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHhccCCCCcccH
Confidence 999999999999998875 46678888899999998887643 566899888887765422222
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHH
Q 001945 735 ----KDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAF 810 (992)
Q Consensus 735 ----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 810 (992)
.+++..++++...++..++...-...+...++.++.++.+-.. + .+.++.+..+++.+||.+
T Consensus 744 ~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----e----------~~~~~~~~~~a~GlIgDL 809 (859)
T KOG1241|consen 744 VDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----E----------PDVSEALHAAALGLIGDL 809 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----C----------cccchHHHHHHHHHHHHH
Confidence 2456677888888887776322233344445555555543221 0 123345667888999999
Q ss_pred HHHhCCChHHHH
Q 001945 811 AKSMGPHFAPIF 822 (992)
Q Consensus 811 ~~~~~~~~~~~~ 822 (992)
+..+|+...+++
T Consensus 810 ~~~fg~~~~~~~ 821 (859)
T KOG1241|consen 810 ATMFGKGVIKLF 821 (859)
T ss_pred HHHcccchhhhh
Confidence 999998766544
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-47 Score=381.30 Aligned_cols=705 Identities=18% Similarity=0.246 Sum_probs=541.5
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhh-----------hc
Q 001945 3 QSLELLLIQ-FLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRT-AKTPNVRQLAAVLLRKKIT-----------GH 67 (992)
Q Consensus 3 ~~l~~ll~~-~~s~d~~~r~~A~~~l~~~~~~p--~~~~~l~~il~~-~~~~~~r~~a~~~l~~~i~-----------~~ 67 (992)
.++.++.++ .+|||+..|..||.+|.++.... .|+..+.+.+.+ .+++..|..|++.||+.+. .+
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 456667777 48999999999999999998764 477778888876 4589999999999999873 47
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCH-HHHHHHHHHHHHhh
Q 001945 68 WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLT 146 (992)
Q Consensus 68 ~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~ 146 (992)
|..+++|.++++|...++.|.+ +.+..-+.+++.++.|++.+.|++.||+++..+.....+..+ ..++.++.+++.++
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 9999999999999999999996 899999999999999999999999999999999998877654 67889999999999
Q ss_pred hhhhh-cccccHHHH-HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHH
Q 001945 147 ETIGQ-TFRPHFADM-QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224 (992)
Q Consensus 147 ~~~~~-~~~~~~~~i-~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 224 (992)
+...+ .+....+.+ +.++...++.+++..||.+|++||..-+.+..........+++ ++++..+..+.++.++..
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy---~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY---FMQVVCEATQGNDEELQH 239 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch---hheeeehhccCCcHHHHH
Confidence 87554 454445554 4566667777789999999999998855444322211112333 455555566678899999
Q ss_pred HHHHHHHHHhcCCccchHHHHHHH-HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-----------hhhcCC---
Q 001945 225 IAFEIFDELIESPAPLLGDSVKSI-VHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-----------LKKHKL--- 289 (992)
Q Consensus 225 ~~~~~l~~l~~~~~~~~~~~l~~l-i~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-----------~~~~~~--- 289 (992)
.++.||..+.....+++..++.+. ..+....+.++ .+++..+++++|+++++..-.. ..+++|
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~a 317 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARA 317 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHH
Confidence 999999999998889998888764 44555566665 8899999999999987643211 111222
Q ss_pred -hHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC
Q 001945 290 -VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 290 -~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
+..++|.++.+|...++|.++|+|++..+|..||..+++..|+.++.+++.++.+.+.+++|+.|++|.+++|.+.++.
T Consensus 318 av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 318 AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 3458999999999988888999999999999999999999999999999999999999999999999999999999985
Q ss_pred HH-HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH----------------------------------
Q 001945 369 AE-WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI---------------------------------- 413 (992)
Q Consensus 369 ~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---------------------------------- 413 (992)
.+ -..+.+++.+|.+...+.|+.-.|+..+.||+|+++.+....+
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhH
Confidence 54 4455689999999999999999999999999999988764221
Q ss_pred ---------------HhhhhhHHHHHHHhcc--cCChHHHHHHHHHHHHHHHhhccccccchHHHH----HHHHHHhc--
Q 001945 414 ---------------VSHYESVLPCILNALE--DESDEVKEKSYYALAAFCEDMGEEILPFLDPLM----GKLLAALE-- 470 (992)
Q Consensus 414 ---------------~~~~~~ll~~l~~~l~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~----~~l~~~l~-- 470 (992)
.+++..++..|++.-. ......|.++.++|+.++..+++.+.+.+..+. ..|-..++
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~ 557 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVL 557 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233445555554322 344567888899999998888766554333333 33322221
Q ss_pred -----CC----CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhcc
Q 001945 471 -----NS----PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (992)
Q Consensus 471 -----~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 541 (992)
.. ..+++++.+..+..++...+.++.+..+++|.++.++++..+ .....+..+..++.+..+++. .|.
T Consensus 558 ~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~--~t~~~~dV~~aIsal~~sl~e-~Fe 634 (858)
T COG5215 558 GQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK--PTTAFGDVYTAISALSTSLEE-RFE 634 (858)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC--CchhhhHHHHHHHHHHHHHHH-HHH
Confidence 11 246788999999999999999999999999999999998762 223345577788888888865 899
Q ss_pred CChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCC
Q 001945 542 PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (992)
Q Consensus 542 ~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (992)
.|++.+++++.+.++..+..+...+...+|+++..++.+|.+|-..++..|.+.++.....
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~------------------- 695 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH------------------- 695 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc-------------------
Confidence 9999999999999987788899999999999999999999999999999999888632100
Q ss_pred CCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccC-C------ChhHHHHHHHHHH
Q 001945 622 SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASY-F------HEDVRYQAVFALK 694 (992)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~------~~~vr~~a~~~l~ 694 (992)
+ +.|.+.+.++|.++...|..|.+|++.++-.+.+..+. + -.+.|..+...
T Consensus 696 -----------R---------~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~-- 753 (858)
T COG5215 696 -----------R---------DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL-- 753 (858)
T ss_pred -----------c---------ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH--
Confidence 1 36889999999999999999999999998777666431 1 12445544443
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCCh-HHHH-HHHHHHHHHHHHHhCCcccHH
Q 001945 695 NILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDD-KDVV-AQACTSIVEIINDYGYMAVEP 759 (992)
Q Consensus 695 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~~~ 759 (992)
+..++.++..+....+..+.++...++..+-.+. ++++ .+.. ..++..++++...+|.+.++.
T Consensus 754 -v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~ia-eDp~~se~~traalGLigDla~mfpkgelk~ 818 (858)
T COG5215 754 -VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIA-EDPNGSEAHTRAALGLIGDLAGMFPKGELKF 818 (858)
T ss_pred -HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhh-cCCccchhHHHHHHHHHHHHHHhCCCcchhh
Confidence 2333333333322344556677777777665443 3322 1222 467888999999998775544
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-39 Score=351.81 Aligned_cols=853 Identities=17% Similarity=0.230 Sum_probs=598.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCC-----C-----CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHH
Q 001945 13 LMPDNDARRQAEDQIKRLAKD-----P-----QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (992)
Q Consensus 13 ~s~d~~~r~~A~~~l~~~~~~-----p-----~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ 82 (992)
.++|+++|+-|--.+.++... + ..-..++.++.+++.+.+|+.-+-..-...++. + ++.+..+.+.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~---l-~e~WPell~~ 122 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND---L-PEKWPELLQF 122 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc---c-ccchHHHHHH
Confidence 467999999998887665321 1 234568888888888888876654443333222 1 2255667778
Q ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcccCCC--CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh--hc----cc
Q 001945 83 LIESITLEHSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--QT----FR 154 (992)
Q Consensus 83 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--~~----~~ 154 (992)
|++...+ +++..|..+-.++..+....... +...++.+.+.+.+++++..+|..+++.++.++.... .. +.
T Consensus 123 L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~ 201 (1075)
T KOG2171|consen 123 LFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR 201 (1075)
T ss_pred HHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 8888885 89999999999999887654321 2345788888889988877799999999999988774 22 33
Q ss_pred ccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 001945 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDE 232 (992)
Q Consensus 155 ~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~~~~~l~~ 232 (992)
..++.++..+...+.+ .+.+.-..+++++..++...+. -++..+..+++......++. ++.+|..+++++..
T Consensus 202 ~llP~~l~vl~~~i~~-~d~~~a~~~l~~l~El~e~~pk-----~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQD-GDDDAAKSALEALIELLESEPK-----LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHhHHHHHHhHhhhhc-cchHHHHHHHHHHHHHHhhchH-----HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4455555666666666 7777778888888888877632 25566666776666555443 56889999999999
Q ss_pred HhcCCcc---chHHHHHHHHHHHHHHhhCC----------CCC----hHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHH
Q 001945 233 LIESPAP---LLGDSVKSIVHFSLEVSSSH----------NLE----PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (992)
Q Consensus 233 l~~~~~~---~~~~~l~~li~~~~~~~~~~----------~~~----~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (992)
+++..|. ...++...++..++..+... +.+ +.....|.+.+..++..-+. ...++++++
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g----~~v~p~~~~ 351 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG----KQVLPPLFE 351 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh----hhehHHHHH
Confidence 9887432 22223444444444433211 111 12345566666666654332 125566666
Q ss_pred HHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHH
Q 001945 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM 372 (992)
Q Consensus 296 ~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 372 (992)
.+-.++... +|..|+++.-+++.+++..+ ...+|.+++.+...++|+++++|++|+.++|+++......+
T Consensus 352 ~l~~~l~S~-------~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 352 ALEAMLQST-------EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHhcCC-------CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 666666543 58999999999999999888 45678999999999999999999999999999999998888
Q ss_pred HHhHHH-HHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcH-HHHhhhhhHHHH-HHHhcccCChHHHHHHHHHHHHHHH
Q 001945 373 KEKLES-VLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPC-ILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 373 ~~~l~~-i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ll~~-l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.++... +.|.++..+.+ .+++|+..|+.++-.+++.+.. .+.+|++.++.. +...+++.++.||+.++.+|++++.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 777554 55688888876 5789999999999999887754 567899999994 4455566678999999999999999
Q ss_pred hhccccccchHHHHHHHHHHhcCCC----HhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHhccChhhhHhHHH
Q 001945 449 DMGEEILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (992)
Q Consensus 449 ~~~~~~~~~~~~l~~~l~~~l~~~~----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 523 (992)
.....+.||++.+|+.|.+.++..+ ..+|...++|++.++.++| +.|.|+..+++..+.....+.-+.+...+..
T Consensus 505 AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 505 AAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 9999999999999999999998764 5688899999999999999 8999999999998887754333344566788
Q ss_pred HHHHHHHHHHhhchhhccCChHHHHHHHHhccCC------------------CCch------------------hhHHHH
Q 001945 524 ATELLGLVAESVGRARMEPILPPFVEAAISGFGL------------------EFSE------------------LREYTH 567 (992)
Q Consensus 524 ~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~------------------~~~~------------------~r~~~~ 567 (992)
.+..++.+++..|+ .|.||++.+|+.++...+. ++++ =+..+.
T Consensus 585 ~~~~warmc~ilg~-~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~ 663 (1075)
T KOG2171|consen 585 MIAFWARMCRILGD-DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETAC 663 (1075)
T ss_pred HHHHHHHHHHHhch-hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHH
Confidence 89999999999987 8999999999988865321 0111 256788
Q ss_pred HHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHH
Q 001945 568 GFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAA 647 (992)
Q Consensus 568 ~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 647 (992)
.+++.++..++..|.||+.++++..+..+... .+. .+|.+
T Consensus 664 ~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~-------------------------------------fhd---gVR~a 703 (1075)
T KOG2171|consen 664 EALGEYAKELKEAFAPYVEQVVELMVPLLKFY-------------------------------------FHD---GVRKA 703 (1075)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-------------------------------------hhh---HHHHH
Confidence 89999999999999999999999554443311 111 36888
Q ss_pred HHHHHHHHHHHhcc---cccchHHHHHHHHHhc----cc-CCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 001945 648 ATQALGLFALHTKS---SYAPFLEESLKILVRH----AS-YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILD 719 (992)
Q Consensus 648 a~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~----~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 719 (992)
|+.++..+.+.... ....|+..++..+.+. +. .+..++-....+++...++.++. ..-.++..+....
T Consensus 704 a~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~----~~L~~~~~~~~~~ 779 (1075)
T KOG2171|consen 704 AAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGD----NCLNEDGLEALLG 779 (1075)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCc----ccCCcHHHHHHHH
Confidence 88888877655432 2333666666655554 22 24445555555555555554431 1112233333333
Q ss_pred HHHHHHHHHHh-----------hC-----------ChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhh
Q 001945 720 TVMNIFIRTMT-----------ED-----------DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST 777 (992)
Q Consensus 720 ~~~~~l~~~~~-----------~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 777 (992)
.+...+..... ++ .|......+.+.+..++...+ +.+.+.+..+.|.+.+.+.++..
T Consensus 780 ~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k-~~f~p~f~~~~p~iv~~l~~~~~ 858 (1075)
T KOG2171|consen 780 GLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALK-GSFLPFFENFLPLIVKLLKSKKT 858 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhcCCc
Confidence 33333333321 00 011122334444455555555 56678889999999988876532
Q ss_pred hcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcC
Q 001945 778 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMG 857 (992)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~ 857 (992)
.+ +. -+.-+++.++...|+...+|+..++|.+++++.+.++ .+|..|...+|.+++++|
T Consensus 859 ---------------~~-r~----~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~p-EVRqaAsYGiGvlaq~~g 917 (1075)
T KOG2171|consen 859 ---------------VA-RQ----WAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDP-EVRQAAAYGMGVLAQFGG 917 (1075)
T ss_pred ---------------HH-HH----HHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHcC
Confidence 12 21 1223456677778999999999999999999998876 799999999999999999
Q ss_pred CchhhcHhhhHHHHHHhcCCCC------hHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHH
Q 001945 858 SPIAAYVDRVMPLVLKELASPD------AMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAG 931 (992)
Q Consensus 858 ~~~~~~~~~~~~~ll~~l~~~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~ 931 (992)
....+.+...+|.+...+..++ .....||+.|+++++.+.+..+. +.+++..|...+...++.+. ..-...
T Consensus 918 ~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~D~eE-a~~iy~ 994 (1075)
T KOG2171|consen 918 EDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKEDKEE-AVPIYT 994 (1075)
T ss_pred cchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCccchhh-hhhHHH
Confidence 9888888888888888877544 33789999999999999887552 66667666656554322211 122467
Q ss_pred HHHHHHHhCCCCC-C-----hhhHHHHHHhhC
Q 001945 932 AVARMIMVNPQSI-P-----LNQVLPVLLKVL 957 (992)
Q Consensus 932 ~l~~l~~~~~~~~-~-----~~~~l~~~l~~l 957 (992)
.++.+++.++..+ + +|.++..+...+
T Consensus 995 ~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~ 1026 (1075)
T KOG2171|consen 995 FLSDLYESNHPIVLGPNNQNIPKILSVCAESL 1026 (1075)
T ss_pred HHHHHHHhCCCeeeCCCcccchHHHHHHHhhh
Confidence 8999999765443 3 344555444443
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=6.3e-32 Score=286.71 Aligned_cols=839 Identities=16% Similarity=0.186 Sum_probs=578.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-HHHhCC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHH
Q 001945 7 LLLIQFLMPDNDARRQAEDQI-KRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (992)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~l-~~~~~~---------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 76 (992)
++++.+.|+|++.|-+|+..| .++.++ +..+..+++.+. +.+.+|++.|...+.-.+ .++..+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lv----sKvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLV----SKVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHH----hhchHHHH
Confidence 889999999999999999999 666543 234666777664 678899999987666555 45677788
Q ss_pred HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-------CCCcchHHHHHHhhcC--CCHHHHHHHHHHHHHhhh
Q 001945 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-------GEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTE 147 (992)
Q Consensus 77 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-------~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~l~~ 147 (992)
+.+.+.|...+.+ .....|...+-.+-......-|. .-.+.+.|.+.+.+.. +...++..++.++..+..
T Consensus 84 e~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 8888888888775 45566666666555544433331 1234455566555543 334588899999999999
Q ss_pred hhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 001945 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIA 226 (992)
Q Consensus 148 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~ 226 (992)
.++..+.+....++..+..-+.. +...||+.|+.+++.++.+.+.. .+..++..++. .+.. ..+....--
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~----~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNRD----LYVELIEHLLK----GLSNRTQMSATRTY 233 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHh----ccCCCCchHHHHHH
Confidence 99988888778888888888888 88999999999999999988532 24444444444 3332 234444556
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCC
Q 001945 227 FEIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (992)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (992)
+.++..++...+..++.|++.+++++.+.+.. ...+++.|+.+++.+..+..+.|..+.+ +.+.+++.+++.++...
T Consensus 234 Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yisYDP 311 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYISYDP 311 (1233)
T ss_pred HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhccCC
Confidence 67788888878888899999988888887732 2237899999999999999998887764 78889999998876320
Q ss_pred -------CC--------------------CCCCCCchHHHHHHHHHHHHHHcch---hchHHHHHHHHhhhcCCChhhHH
Q 001945 306 -------EA--------------------GEDDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNASPKYRE 355 (992)
Q Consensus 306 -------~~--------------------~~d~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~ 355 (992)
+| |||-.|.+|++|+.|+..+.....+ .+...+-|.+...++.....+|.
T Consensus 312 Ny~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~ 391 (1233)
T KOG1824|consen 312 NYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKA 391 (1233)
T ss_pred CCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHH
Confidence 10 1112489999999999887654431 22222222222333333333333
Q ss_pred HHHHHHHHHh------------------hcCH---HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH
Q 001945 356 AAVTAIGIIS------------------EGCA---EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (992)
Q Consensus 356 ~al~~l~~i~------------------~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (992)
-.+.++-.+. .+.+ ..+....+.|+..+-+.+++.+...|..++..|..+....+....
T Consensus 392 dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~ 471 (1233)
T KOG1824|consen 392 DVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA 471 (1233)
T ss_pred HHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh
Confidence 2222222221 1222 334455667788888888888888899999999999999988888
Q ss_pred hhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 415 SHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 415 ~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
++...++|.+...+.|.+ ...+..+..++...+..+ ++.+.|+...+.+.+.....++-.++..+|+.....++...
T Consensus 472 ~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred hcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 999999999999999886 456777888888777666 56789999999999999999999999999999999998875
Q ss_pred h-------ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhH
Q 001945 492 E-------QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (992)
Q Consensus 492 ~-------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~ 564 (992)
. -++.||+.+++....+.+... +.+..+|++|+.|+|.+...+|. .....++.+++.+.+.+++ ...|.
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~-d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~n--EiTRl 627 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKAT-DSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGN--EITRL 627 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhc--hhHHH
Confidence 3 256789999888888877764 35667899999999999989984 7788889999999888874 45688
Q ss_pred HHHHHHHHHHHHcc-cCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhh
Q 001945 565 YTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLD 643 (992)
Q Consensus 565 ~~~~~~~~i~~~~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (992)
.+++++..++...- -+..|-+..+++.+...+.-. .-.
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~-----------------------------------------~r~ 666 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN-----------------------------------------QRA 666 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH-----------------------------------------HHH
Confidence 88899988876543 455677888888888765411 002
Q ss_pred hHHHHHHHHHHHHHHhcccccch-HHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 001945 644 EKAAATQALGLFALHTKSSYAPF-LEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVM 722 (992)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (992)
.|...+.++..+.++.+..+.++ ++.++..+..++...+-.+-..|+..+..+.... |..+...-..++
T Consensus 667 lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~----------ps~l~~~~~~iL 736 (1233)
T KOG1824|consen 667 LRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ----------PSSLLKISNPIL 736 (1233)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc----------cHHHHHHhhhhH
Confidence 45667778888888888888777 6778888888888777677777777777665542 222333444555
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHh---CCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHH
Q 001945 723 NIFIRTMTEDDDKDVVAQACTSIVEIINDY---GYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVI 799 (992)
Q Consensus 723 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (992)
+.++..+++. -....++.++-..+... +...+ + +..++..+...-..+.. ..-....
T Consensus 737 ~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~~~~l----~--y~~l~s~lt~PV~~~~~-----------~~l~kqa 796 (1233)
T KOG1824|consen 737 DEIIRLLRSP---LLQGGALSALLLFFQALVITKEPDL----D--YISLLSLLTAPVYEQVT-----------DGLHKQA 796 (1233)
T ss_pred HHHHHHhhCc---cccchHHHHHHHHHHHHHhcCCCCc----c--HHHHHHHHcCCcccccc-----------cchhHHH
Confidence 5555554432 22222233222222211 21111 1 22233344433221111 0122234
Q ss_pred HHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCC
Q 001945 800 MDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD 879 (992)
Q Consensus 800 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 879 (992)
..+++.|...+....++...+....+...+.. ...+...+.+|+-.+|++-+..+.. +.+.+-..+++.++++.
T Consensus 797 ~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s---~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~ 870 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQKSKSLATKLIQDLQS---PKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPS 870 (1233)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHHhC---CCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCCh
Confidence 56889999999999887666655555544433 3333457889999999987765543 33455568899999999
Q ss_pred hHhHHHHHHHHHHHHhhcCcchhhHHHH-----------HHHhhhhhhCC--------------------CC-CChhhHh
Q 001945 880 AMNRRNAAFCVGELCKNGGESALKYYGD-----------ILRGLYPLFGD--------------------SE-PDDAVRD 927 (992)
Q Consensus 880 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~-----------~l~~l~~~l~~--------------------~~-~~~~~~~ 927 (992)
.+|+.+|+++||.++..+-+.|.|++-+ +++++..+|.. .+ ..+..|.
T Consensus 871 edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~ 950 (1233)
T KOG1824|consen 871 EDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRN 950 (1233)
T ss_pred HHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHH
Confidence 9999999999999998666655554332 23344444432 12 1246677
Q ss_pred hHHHHHHHHHHhCCCC
Q 001945 928 NAAGAVARMIMVNPQS 943 (992)
Q Consensus 928 n~~~~l~~l~~~~~~~ 943 (992)
-+..|+|+++...|..
T Consensus 951 vvAECLGkL~l~epes 966 (1233)
T KOG1824|consen 951 VVAECLGKLVLIEPES 966 (1233)
T ss_pred HHHHHhhhHHhCChHH
Confidence 7899999999988854
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-34 Score=289.87 Aligned_cols=646 Identities=17% Similarity=0.206 Sum_probs=472.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH
Q 001945 204 IPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS 283 (992)
Q Consensus 204 ~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 283 (992)
+.++.+.+.+.. +++..++..+.+.+.++-. .|. |..++--+ +...++.+..+|..|--++..=++.....
T Consensus 12 l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~I------L~~~~~~d~~~Rs~aGLlLKNnvr~~~~~ 82 (885)
T KOG2023|consen 12 LQQLAQLLKNSQ-SPNSETRNNVQEKLEQFNL-FPD-FNNYLIYI------LIRAKSEDVPTRSLAGLLLKNNVRGHYNS 82 (885)
T ss_pred HHHHHHHHHhcc-CCChHHHHHHHHHHHHHhc-ccc-hhceeeEE------EecccccchhHHHHhhhhHhccccccccC
Confidence 345555555443 5677888888877776654 222 22221111 11122335556666543333222211111
Q ss_pred hhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 001945 284 LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (992)
Q Consensus 284 ~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~ 363 (992)
+.. +...-+-..+++-+.+.+. -.|...+..+..++...+-..||.++|.+.+.+.+++....++|+.+|..
T Consensus 83 ~~~-~~~~yiKs~~l~~lgd~~~-------lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~K 154 (885)
T KOG2023|consen 83 IPS-EVLDYIKSECLHGLGDASP-------LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQK 154 (885)
T ss_pred CCh-HHHHHHHHHHHhhccCchH-------HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHH
Confidence 111 1111233344555544432 56666777777777777777889999999999999999999999999999
Q ss_pred HhhcCHHHHHH-----hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHH
Q 001945 364 ISEGCAEWMKE-----KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK 438 (992)
Q Consensus 364 i~~~~~~~~~~-----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~ 438 (992)
++|...+.+.. -++-++|.++..+++++|.+|..|..|+.++.-.....+-.+++..+..++..-+|+++.||..
T Consensus 155 IcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~ 234 (885)
T KOG2023|consen 155 ICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKN 234 (885)
T ss_pred HHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 99987655443 3678899999999999999999999999999887767777788999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh--hccCcccHHHHHHHHHHHHhcc---
Q 001945 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA--EQAFIPYAERVLELLKIFMVLT--- 513 (992)
Q Consensus 439 a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~--- 513 (992)
.|.++.-+.+.-++.+.|+++.+++.++...++.+.+|.-+|.+.|-+++... ++.+.||+++++|.|.+-+...
T Consensus 235 vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D 314 (885)
T KOG2023|consen 235 VCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDD 314 (885)
T ss_pred HHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcccccc
Confidence 99999999999999999999999999999999999999999999999998753 4677899999999887633210
Q ss_pred --------C--------------------------------hh----------hhHhHHHHHHHHHHHHHhhchhhccCC
Q 001945 514 --------N--------------------------------DE----------DLRSRARATELLGLVAESVGRARMEPI 543 (992)
Q Consensus 514 --------~--------------------------------~~----------~~~~~~~~~~~l~~l~~~~~~~~~~~~ 543 (992)
+ ++ ++.+|.-.-.++..++..+|.+ .
T Consensus 315 ~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e----l 390 (885)
T KOG2023|consen 315 IILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE----L 390 (885)
T ss_pred HHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH----H
Confidence 0 00 1456654445555556555542 3
Q ss_pred hHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCC
Q 001945 544 LPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSD 623 (992)
Q Consensus 544 ~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (992)
++.+++.+.+.+.++.|.+|++.+-++|.|++.+...|.||+|.++|.+++.++.+..
T Consensus 391 L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkp---------------------- 448 (885)
T KOG2023|consen 391 LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKP---------------------- 448 (885)
T ss_pred HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcc----------------------
Confidence 4566777777788889999999999999999999999999999999999998853210
Q ss_pred chhhhhccccceeeecchhhhHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHH
Q 001945 624 DEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS-YAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHA 702 (992)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 702 (992)
-+|..+||+|+.++...-.. -..|+.+++..+++.+-+.+..|+.+|+.++..+-....
T Consensus 449 -------------------lVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~- 508 (885)
T KOG2023|consen 449 -------------------LVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG- 508 (885)
T ss_pred -------------------ceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc-
Confidence 25677899999988765332 235788888888887778899999999999988866432
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHhhhhhhcCC
Q 001945 703 IFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV-EPYMSRLVDATLLLLREESTCQQP 781 (992)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~l~~~l~~~l~~~~~~~~~ 781 (992)
+.+-++++.++..+......-..++ ..-.+++++.+.+.+|.... +.|++.++|-++.-...-.
T Consensus 509 ---------~eLVp~l~~IL~~l~~af~kYQ~KN-LlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls----- 573 (885)
T KOG2023|consen 509 ---------EELVPYLEYILDQLVFAFGKYQKKN-LLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS----- 573 (885)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHhhcc-eehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC-----
Confidence 3466688888888888775432222 33456888888888886654 4468888777765544321
Q ss_pred CCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhc-------C-CC-C------ccchhhHH
Q 001945 782 DNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAK-------S-SR-P------LQDRTMVV 846 (992)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-------~-~~-~------~~~r~~al 846 (992)
+++-.++ ...+|++++++++|..|.||...++...+..+. . .. + ..--..++
T Consensus 574 ------------d~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL 640 (885)
T KOG2023|consen 574 ------------DSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL 640 (885)
T ss_pred ------------cccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH
Confidence 1222344 688999999999999999887766554443333 1 11 1 01234688
Q ss_pred HHHHHHHhhcCCchhhcH--hhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChh
Q 001945 847 ATLAEVARDMGSPIAAYV--DRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDA 924 (992)
Q Consensus 847 ~~l~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 924 (992)
..++-+++.+|..+.+.+ ..++..++.++.|+-++||+.|..-+|.+++...+.+.|+..+++..+-.-+ +.+.-.
T Consensus 641 DL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl--~~~~is 718 (885)
T KOG2023|consen 641 DLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANL--NPENIS 718 (885)
T ss_pred HHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcC--Chhhch
Confidence 889999999998877754 5799999999999999999999999999999999999999988888764333 234567
Q ss_pred hHhhHHHHHHHHHHhCCC
Q 001945 925 VRDNAAGAVARMIMVNPQ 942 (992)
Q Consensus 925 ~~~n~~~~l~~l~~~~~~ 942 (992)
+..||+-|+|.+....+.
T Consensus 719 v~nNA~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 719 VCNNAIWAIGEIALKMGL 736 (885)
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 899999999999987543
No 8
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-31 Score=283.15 Aligned_cols=667 Identities=19% Similarity=0.274 Sum_probs=456.4
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhcccC---------
Q 001945 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK--------- 70 (992)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~-~~~~r~~a~~~l~~~i~~~~~~--------- 70 (992)
|.+++.+++.++..+|+..|+.||++|+++.+.|+|+..+++++.++. +.++|+.|+++||+.+.+.|+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~ 81 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG 81 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence 468899999999999999999999999999999999999999998765 6778999999999999999975
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
+.++.+..+|+.++..+.. .+..+|.+...++-.|.+.++| +.||++++.+...+++++.....+||.|+..+++...
T Consensus 82 I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 82 IPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred CChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 4688999999999999996 7899999999999999999999 5999999999999999999999999999999997643
Q ss_pred -----------hcccccHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHhhcccCChh--hHHHHHhhHHHHHHHHHHHh
Q 001945 151 -----------QTFRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGA--EVVKFREFIPSILNVSRQCL 215 (992)
Q Consensus 151 -----------~~~~~~~~~i~~~l~~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~l 215 (992)
..+...++.+++.+.+.+..++ +....+..++.+.+++.+.=+.. ....|..++..++.++.+-+
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 2344566777888888888722 23344555666655554421111 12224444444444433211
Q ss_pred h----cCC---------HHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHHhh----CCCCChH
Q 001945 216 A----SGE---------EDVAVIAFEIFDELIESPAP--------------LLGDSVKSIVHFSLEVSS----SHNLEPN 264 (992)
Q Consensus 216 ~----~~~---------~~~~~~~~~~l~~l~~~~~~--------------~~~~~l~~li~~~~~~~~----~~~~~~~ 264 (992)
. .-+ ++..+.|+..+.++.++..+ ++..+.+.+++..+++.. ....+++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 1 012 23567888888888765321 223444555555554432 2245788
Q ss_pred HHHHHHHHHHHHHHhhHhHhhh--cCChHH-HHHHHhhhhccCCCCCC-----------------CCCCchHHHHHHHHH
Q 001945 265 TRHQAIQIISWLAKYKYNSLKK--HKLVIP-ILQVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVID 324 (992)
Q Consensus 265 ~r~~a~~~l~~l~~~~~~~~~~--~~~~~~-il~~l~~~l~~~~~~~~-----------------d~~~~~~~~a~~~l~ 324 (992)
+-..++.++..++.... .++ .+.+.. +-.+++|+|+-.++|.+ +|-.+++.++..++-
T Consensus 320 vl~~~l~fl~~~Vs~~~--twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~ 397 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHAS--TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLT 397 (1010)
T ss_pred HHHHHHHHHHHhccHHH--HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHH
Confidence 88888889888775432 222 123333 34667888887654421 234578888999999
Q ss_pred HHHHHcchhchHHHHHHHHhhhc--------CCChhhHHHHHHHHHHHhhcCH--HHHHHhHHH-HHHHHHhhcCCCChh
Q 001945 325 TMALNLAKHVFPPVFEFASVSCQ--------NASPKYREAAVTAIGIISEGCA--EWMKEKLES-VLHIVLGALRDPEQF 393 (992)
Q Consensus 325 ~l~~~~~~~~~~~~~~~l~~~l~--------~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~-i~~~l~~~l~d~~~~ 393 (992)
.++...|+..+|.+++++.+.+. ..+.+.+++|+.++|.+++... ..+...++. +++++++.++++.-.
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 99999999999999999888775 3567889999999999997532 233344444 568999999999999
Q ss_pred HHHHHHHHHHHhH-hhhcHHHHhhhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHH
Q 001945 394 VRGAASFALGQFA-EYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAA 468 (992)
Q Consensus 394 vr~~a~~~l~~l~-~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~ 468 (992)
.|..|||.++.++ ..++. ...+...+....+++. |+.-.||..|+-||..|+.+.. ..+.++++.+++.++.+
T Consensus 478 Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 9999999999999 55643 3455667778888888 6677899999999999999885 44889999999999999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH----hcc-----ChhhhHhHH-HHHHHHHHHHHhhc--
Q 001945 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM----VLT-----NDEDLRSRA-RATELLGLVAESVG-- 536 (992)
Q Consensus 469 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l----~~~-----~~~~~~~~~-~~~~~l~~l~~~~~-- 536 (992)
.+..+.+. ...++-.++...++.+.||...++..|.+.+ ... .+++..+.+ -.+.++..+..++.
T Consensus 556 ~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 556 SNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred HHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88765543 3445667788889999999988877665433 321 111222211 12333444443443
Q ss_pred hhh---ccCChHHHHHHHHhccC---------------CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccC
Q 001945 537 RAR---MEPILPPFVEAAISGFG---------------LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (992)
Q Consensus 537 ~~~---~~~~~~~i~~~l~~~l~---------------~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~ 598 (992)
++. ..|.+-+++..+++.-. --.+++....+..+.-+.+++...-..|++.++|.+-+...+
T Consensus 633 p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 111 22222333333322110 012334555667777777777777777888888888777765
Q ss_pred CCCCccCCCCCc-chhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhc
Q 001945 599 DDGSAVDIDGSD-DENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRH 677 (992)
Q Consensus 599 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 677 (992)
.-+.. .++.+ ...+-.+. -..++-.++...+...|++.+..++-.+++.+..|++..++.....
T Consensus 713 g~~~~--~s~~~y~~il~~i~-------------~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~ 777 (1010)
T KOG1991|consen 713 GTPSL--LSNPDYLQILLEII-------------KKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSR 777 (1010)
T ss_pred Cchhh--hccchHHHHHHHHH-------------HHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHH
Confidence 42210 00000 00000000 0000111222345678999999999999887778888888887776
Q ss_pred ccC--CChhHHHHHHH
Q 001945 678 ASY--FHEDVRYQAVF 691 (992)
Q Consensus 678 ~~~--~~~~vr~~a~~ 691 (992)
+.. .....|..+++
T Consensus 778 l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 778 LTREVETSELRVMLLE 793 (1010)
T ss_pred HhccccchHHHHHHHH
Confidence 654 34445555444
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-28 Score=256.10 Aligned_cols=670 Identities=16% Similarity=0.208 Sum_probs=486.5
Q ss_pred cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH-HHHHhhHhHhhh--cCC----
Q 001945 217 SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS-WLAKYKYNSLKK--HKL---- 289 (992)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~-~l~~~~~~~~~~--~~~---- 289 (992)
++|+.++..+-..|.++... .++.++..+.+++-+.......|..|--.|. .+....+..-.. +.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~-------nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQ-------NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLP 84 (859)
T ss_pred CCCcchHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCC
Confidence 45666666666666665532 3444555555555555545666665533332 333222211000 000
Q ss_pred --h-HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH-HcchhchHHHHHHHHhhhcCCCh-hhHHHHHHHHHHH
Q 001945 290 --V-IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL-NLAKHVFPPVFEFASVSCQNASP-KYREAAVTAIGII 364 (992)
Q Consensus 290 --~-~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~l~~~l~~~~~-~~r~~al~~l~~i 364 (992)
. ..+-..++..|...++ .....|..|+..++. .++...||.+++.+.....+... ..|.+++.++|.+
T Consensus 85 ~e~reqVK~~il~tL~~~ep-------~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyi 157 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPEP-------RRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYI 157 (859)
T ss_pred HHHHHHHHHHHHHHcCCCCC-------CccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 0 1234445555554443 556778899988875 57788999999998887766544 4999999999999
Q ss_pred hhcC-HHHHHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhhcHHHHhh--hhhHHHHHHHhcccCChHHHHHH
Q 001945 365 SEGC-AEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSH--YESVLPCILNALEDESDEVKEKS 439 (992)
Q Consensus 365 ~~~~-~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~v~~~a 439 (992)
++.. ++.+..+...++-.++.+.. .++..||.+|..+|-.-.++.+..+..- -.-++..++..-+.++.+++..|
T Consensus 158 ce~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 158 CEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred HccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHH
Confidence 9975 56667778889988888876 6889999999999988877765443321 13377888888999999999999
Q ss_pred HHHHHHHHHhhccccccchHH-HHHHHHHHhcCCCHhHHHHHHHHHHHHHHH-------hhccCcccH------------
Q 001945 440 YYALAAFCEDMGEEILPFLDP-LMGKLLAALENSPRNLQETCMSAIGSVAAA-------AEQAFIPYA------------ 499 (992)
Q Consensus 440 ~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~------------ 499 (992)
..+|.++..-..+.+.+|+.+ ++...+..+.+++.+|..++++.|++++.. .++.+..+.
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~ 317 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Confidence 999999999988889999987 888889999999999999999999988762 122222111
Q ss_pred HHHHHHHHHHHhcc----ChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 500 ERVLELLKIFMVLT----NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 500 ~~~~~~l~~~l~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
+.++|.|.+.+.+. +++++.....|-.|+..+++.+|.+ +.| .+++.+-+.+++++|.-|+.+..+||.+..
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVP---HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 24788888888752 3345555556889999999888874 444 444555567889999999999999999988
Q ss_pred Hcc-cCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHH
Q 001945 576 VLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGL 654 (992)
Q Consensus 576 ~~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~ 654 (992)
... ....|+.+..+|.+++.+. | +.+.+|..+.+++|.
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~-D----------------------------------------~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMS-D----------------------------------------PSLWVKDTAAWTLGR 432 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhc-C----------------------------------------chhhhcchHHHHHHH
Confidence 765 4577888999999987664 1 122467889999999
Q ss_pred HHHHhcccccc--hHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhC
Q 001945 655 FALHTKSSYAP--FLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED 732 (992)
Q Consensus 655 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 732 (992)
+++.+++...+ +....+..+...+.+ ++.+-..++.++..+++++.++..+.+.+ +...++++.++..|++.....
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt-~~~t~~y~~ii~~Ll~~tdr~ 510 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQT-DPATPFYEAIIGSLLKVTDRA 510 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCC-CccchhHHHHHHHHHhhcccc
Confidence 99998865544 466666666666553 56677788899999999887765554222 223478899999999886432
Q ss_pred --ChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHH
Q 001945 733 --DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAF 810 (992)
Q Consensus 733 --~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 810 (992)
.+.+.+.+++++|.++++..... ..+.+..+...+..-|......+... - ++-+.-..+...++.+|+.+
T Consensus 511 dgnqsNLR~AAYeALmElIk~st~~-vy~~v~~~~l~il~kl~q~i~~~~l~-~------~dr~q~~eLQs~Lc~~Lq~i 582 (859)
T KOG1241|consen 511 DGNQSNLRSAAYEALMELIKNSTDD-VYPMVQKLTLVILEKLDQTISSQILS-L------ADRAQLNELQSLLCNTLQSI 582 (859)
T ss_pred ccchhhHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-H------hhHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999876532 23333333333333332221111100 0 00112234566778889999
Q ss_pred HHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcC-CCChHhHHHHHHH
Q 001945 811 AKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFC 889 (992)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~vr~~a~~~ 889 (992)
....+.++.++.+.++..+++.++..++..+...|+..++.+++.+|..+..|.+.+.|.+...|+ -.+..|...|..-
T Consensus 583 ~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVgl 662 (859)
T KOG1241|consen 583 IRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGL 662 (859)
T ss_pred HHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 999999999999999999999998766666788999999999999999999999999999999995 4567799999999
Q ss_pred HHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCC-C-hhhHHHHHHh
Q 001945 890 VGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVLLK 955 (992)
Q Consensus 890 l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~-~-~~~~l~~~l~ 955 (992)
+|.++..-++.+.||...+++.|.+.++.+.-+..++--.+|++|.|....+..+ + ++.+++.+-.
T Consensus 663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 663 VGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998766666777778999999999876665 3 6777776643
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=7.4e-26 Score=241.03 Aligned_cols=840 Identities=16% Similarity=0.189 Sum_probs=544.3
Q ss_pred HHHHHHHHHHHHhCC-----CCcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhc
Q 001945 19 ARRQAEDQIKRLAKD-----PQVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (992)
Q Consensus 19 ~r~~A~~~l~~~~~~-----p~~~~~l~~il~---~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~ 90 (992)
++=.+-..+..+.++ |+|=..++..+. .++...+|+-|.+.+.... ...+.+....+.+.++..|.+.
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la----~~~~~~ly~~li~~Ll~~L~~~ 224 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA----SSCNRDLYVELIEHLLKGLSNR 224 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHhccCCC
Confidence 444444445444332 455344443332 1344568888888877664 2346677888889999999876
Q ss_pred CCHhHHHHHHHHHHHHHcccCCC--CCCcchHHHHHHhh---cCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHH
Q 001945 91 HSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFS---QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLL 165 (992)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l---~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~ 165 (992)
..+...+...++++.+++....+ ...+..+|.+.+.+ +..+.+.|+.++++++.+..+.+..+.++++++++++.
T Consensus 225 ~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 225 TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCL 304 (1233)
T ss_pred CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHH
Confidence 77777788889999988743321 35688899999888 66778999999999999999999999999999999999
Q ss_pred HhcCCCC---------------------------------ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHH
Q 001945 166 KCLQDET---------------------------------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (992)
Q Consensus 166 ~~l~~~~---------------------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (992)
+.++.++ +|.||.+|++|+..++....+- ...-++.+-|.++.
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~-L~~~~q~l~p~lI~--- 380 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEM-LPDFYQTLGPALIS--- 380 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHH-HHHHHHHhCHHHHH---
Confidence 9887432 3679999999999988765211 01112223333333
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCCc---------------------cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 001945 213 QCLASGEEDVAVIAFEIFDELIESPA---------------------PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (992)
Q Consensus 213 ~~l~~~~~~~~~~~~~~l~~l~~~~~---------------------~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~ 271 (992)
.+++.++.++...+.++..+....+ ..+....+.++..+-..+..+ +...|..++.
T Consensus 381 -RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~k--s~kt~~~cf~ 457 (1233)
T KOG1824|consen 381 -RFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREK--SVKTRQGCFL 457 (1233)
T ss_pred -HHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhc--cccchhhHHH
Confidence 3345666777777777776654321 223344455666555555544 3347788888
Q ss_pred HHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhc
Q 001945 272 IISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQ 347 (992)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~ 347 (992)
.+..++...|..... .+..+++.+.-.+.+... .......+..++.......+ ...++.+.+.+.....
T Consensus 458 lL~eli~~lp~~l~~--~~~slvpgI~~~l~DkSs-----ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~ 530 (1233)
T KOG1824|consen 458 LLTELINVLPGALAQ--HIPSLVPGIIYSLNDKSS-----SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG 530 (1233)
T ss_pred HHHHHHHhCcchhhh--cccccchhhhhhcCCccc-----hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence 888888777765544 445566665555544321 01233344444443333333 3445666677777788
Q ss_pred CCChhhHHHHHHHHHHHhhcCH-------HHHHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 348 NASPKYREAAVTAIGIISEGCA-------EWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~-------~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
++-++.-.-|+...++++.... -...+++..++...++.+. |.+..||..|+.|+|++...+++.....++
T Consensus 531 d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~ 610 (1233)
T KOG1824|consen 531 DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP 610 (1233)
T ss_pred CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 8889998889888888886432 1234667788888888875 789999999999999999999877778889
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 497 (992)
.+++.+++.++++ -.|..|++|+..++.+. .-.+.|.+..+++.+...+.......|...+.++..+....+..+.+
T Consensus 611 ~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~ 688 (1233)
T KOG1824|consen 611 RTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA 688 (1233)
T ss_pred HHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 9999999999876 46778889998887654 33467889999999999988888889999999999999988877776
Q ss_pred cH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC--chhhHHHHHHHHHHH
Q 001945 498 YA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF--SELREYTHGFFSNIA 574 (992)
Q Consensus 498 ~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~r~~~~~~~~~i~ 574 (992)
+. +.++.-+..++. ..+..+...++.++..+.... +......-.++++.++..++++- -..-..+...+..++
T Consensus 689 ~~~e~vL~el~~Lis---esdlhvt~~a~~~L~tl~~~~-ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV 764 (1233)
T KOG1824|consen 689 ELLEAVLVELPPLIS---ESDLHVTQLAVAFLTTLAIIQ-PSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALV 764 (1233)
T ss_pred HHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHhcc-cHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHH
Confidence 65 444444444442 234445556777777766433 22333333444444444444220 011112222222222
Q ss_pred HHcccCccCchhhh--------------------------hHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhh
Q 001945 575 GVLEDGFAQYLPLV--------------------------VPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHC 628 (992)
Q Consensus 575 ~~~~~~~~~~l~~i--------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (992)
..-.+++. |..-+ ...+...+... .......+
T Consensus 765 ~t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-------s~s~a~kl-------------- 822 (1233)
T KOG1824|consen 765 ITKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-------SKSLATKL-------------- 822 (1233)
T ss_pred hcCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-------chhHHHHH--------------
Confidence 22222221 11110 01111111000 00000000
Q ss_pred hccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCC
Q 001945 629 ERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHN 708 (992)
Q Consensus 629 ~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 708 (992)
...+.-.......|..|+-.+|++....+.... +.+-..++..+++++++++.+|..+|+.+...
T Consensus 823 ---~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vg--------- 887 (1233)
T KOG1824|consen 823 ---IQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVG--------- 887 (1233)
T ss_pred ---HHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---------
Confidence 000000011123567777888876655443333 33334667888999999999999999988441
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 001945 709 EGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIE 788 (992)
Q Consensus 709 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 788 (992)
.+..|++.++. .+..+ +.-..-.+.++.+++.......+.++++. ++.+|.+..+|.
T Consensus 888 ----nl~~yLpfil~----qi~sq--pk~QyLLLhSlkevi~~~svd~~~~~v~~----IW~lL~k~cE~~--------- 944 (1233)
T KOG1824|consen 888 ----NLPKYLPFILE----QIESQ--PKRQYLLLHSLKEVIVSASVDGLKPYVEK----IWALLFKHCECA--------- 944 (1233)
T ss_pred ----chHhHHHHHHH----HHhcc--hHhHHHHHHHHHHHHHHhccchhhhhHHH----HHHHHHHhcccc---------
Confidence 12334544444 44333 33345567888888876554433444444 555554433221
Q ss_pred CcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhH
Q 001945 789 DDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVM 868 (992)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~ 868 (992)
++..+..+++|+|.++-.-++ .++|.+-..+....+ ..|..++.++...+.--+..+.+++.+.+
T Consensus 945 -------eegtR~vvAECLGkL~l~epe-------sLlpkL~~~~~S~a~-~~rs~vvsavKfsisd~p~~id~~lk~~i 1009 (1233)
T KOG1824|consen 945 -------EEGTRNVVAECLGKLVLIEPE-------SLLPKLKLLLRSEAS-NTRSSVVSAVKFSISDQPQPIDPLLKQQI 1009 (1233)
T ss_pred -------hhhhHHHHHHHhhhHHhCChH-------HHHHHHHHHhcCCCc-chhhhhhheeeeeecCCCCccCHHHHHHH
Confidence 113366789999998865333 678888887776665 47998888887766555666778899999
Q ss_pred HHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC----------------CCChhhHhhHHHH
Q 001945 869 PLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS----------------EPDDAVRDNAAGA 932 (992)
Q Consensus 869 ~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~----------------~~~~~~~~n~~~~ 932 (992)
..+++.++|+|.+||+.|.-.+...+.+.|.-+...++++++.++.--..+ ++--..|..|..|
T Consensus 1010 g~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEc 1089 (1233)
T KOG1824|consen 1010 GDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFEC 1089 (1233)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999888888888888776332211 2223689999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHhhC
Q 001945 933 VARMIMVNPQSIPLNQVLPVLLKVL 957 (992)
Q Consensus 933 l~~l~~~~~~~~~~~~~l~~~l~~l 957 (992)
+-+++..+-+.+++.+++.+.-..|
T Consensus 1090 mytLLdscld~~dit~Fl~~~~~GL 1114 (1233)
T KOG1824|consen 1090 MYTLLDSCLDRLDITEFLNHVEDGL 1114 (1233)
T ss_pred HHHHHHhhhhhccHHHHHHHHHhhc
Confidence 9999998877777777777666555
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-26 Score=244.13 Aligned_cols=716 Identities=16% Similarity=0.202 Sum_probs=464.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhcccC-------CCH
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK-------LSP 73 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~-~~~~r~~a~~~l~~~i~~~~~~-------~~~ 73 (992)
.+.+.+.|..+++||+++|+.||+.|+++..++++...+++++.+++ ++++|..|++.+|+.++++|.. +.+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence 36788889999999999999999999999999999999999998866 8999999999999999999964 567
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~ 153 (992)
+.++.||..++.++.+ .+..+..++.++++.|+++++|. .||.|+|.+...+++.|-++..+.+..-..+...+...+
T Consensus 84 ~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred hHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 7899999999999996 78999999999999999999995 999999999999999988887777777777776654322
Q ss_pred cc---------cHH----HHHHHHHHh---cCC-CCChH---HHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHH
Q 001945 154 RP---------HFA----DMQALLLKC---LQD-ETSNR---VRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (992)
Q Consensus 154 ~~---------~~~----~i~~~l~~~---l~~-~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 213 (992)
.. .+. .+..++.+. .+. .++.. +-...+..+.++.....-.+-..-|.+.+...+....+
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k 241 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHK 241 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHH
Confidence 11 111 122222221 111 01111 11111222222221111000011133333333333333
Q ss_pred Hhh-------cCC------HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCC---ChHHHHHHHHHHHHHH
Q 001945 214 CLA-------SGE------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL---EPNTRHQAIQIISWLA 277 (992)
Q Consensus 214 ~l~-------~~~------~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~---~~~~r~~a~~~l~~l~ 277 (992)
.+. +++ .+.+...|+.+.-++.+...-|++.+++++...+.+....+. .+.....|++||..++
T Consensus 242 ~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~ 321 (960)
T KOG1992|consen 242 LLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVS 321 (960)
T ss_pred HHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 333 211 245668889888889999999999999999877766554432 3455667899998887
Q ss_pred Hhh--HhHhhhcCChHHHHHH-Hhhhhc-cCCCC----C-----------CCCCCchHHHHHHHHHHHHHHcchhchHHH
Q 001945 278 KYK--YNSLKKHKLVIPILQV-MCPLLA-ESNEA----G-----------EDDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (992)
Q Consensus 278 ~~~--~~~~~~~~~~~~il~~-l~~~l~-~~~~~----~-----------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 338 (992)
+.. +..+...+.+..+.+. +++-+. ..+|+ | ..|.+..|+.|.+.++-++......+.+.+
T Consensus 322 ~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~ 401 (960)
T KOG1992|consen 322 RRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVF 401 (960)
T ss_pred hhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence 632 2222222233333322 222222 11111 0 113345688899999999998875555555
Q ss_pred HHHHHhhhc------CCChhhHHHHHHHHHHHhhc-------CH--HH---HHHh-HHHHHHHHHhhcCCCChhHHHHHH
Q 001945 339 FEFASVSCQ------NASPKYREAAVTAIGIISEG-------CA--EW---MKEK-LESVLHIVLGALRDPEQFVRGAAS 399 (992)
Q Consensus 339 ~~~l~~~l~------~~~~~~r~~al~~l~~i~~~-------~~--~~---~~~~-l~~i~~~l~~~l~d~~~~vr~~a~ 399 (992)
-..+...+. +.+|+.+..+++.+..++-. +. .. +..+ ...+.|.+.+.=..++|.++..++
T Consensus 402 ~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 402 SSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred HHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc
Confidence 555555554 57899999999988887743 11 11 1122 234455555433457899998888
Q ss_pred HHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc---------cccccchHHHHHHHHHHhc
Q 001945 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG---------EEILPFLDPLMGKLLAALE 470 (992)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---------~~~~~~~~~l~~~l~~~l~ 470 (992)
+-+-.+-..+++ +++-.++|.+...+..++..|...|+.++..+..... ..+.||...++..|++.++
T Consensus 482 Ky~~~FR~ql~~---~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 482 KYIYTFRNQLGK---EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred ceeeeecccCCh---HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 777666666553 4666789999999999988999999999998875432 3567899999999998888
Q ss_pred CCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc--ChhhhHhHHHHHHHHHHHHHhhchhh---ccCChH
Q 001945 471 NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRAR---MEPILP 545 (992)
Q Consensus 471 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~ 545 (992)
.+...--+..+.++-++....++...|+.+.+++.|-+++... +...-..-...++.++.+.+..++.. +.....
T Consensus 559 ~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~ 638 (960)
T KOG1992|consen 559 LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE 638 (960)
T ss_pred CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 7766556778888888888888888999999988888877532 11112223467788887776665432 344445
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCch
Q 001945 546 PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDE 625 (992)
Q Consensus 546 ~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (992)
.+++.+...+..+-.++-.++++.++-+++..+..+.+....++|.+++- .-|.
T Consensus 639 aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp--------------~lW~------------ 692 (960)
T KOG1992|consen 639 ALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP--------------NLWK------------ 692 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH--------------HHHh------------
Confidence 56665555565556677888999999998888765555555566666531 0111
Q ss_pred hhhhccccceeeecchhhhHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHh
Q 001945 626 AHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAI 703 (992)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 703 (992)
+++. -.+..+.+..+.+.-...+. ..+..++..+.+++.+..- -..++..|..++..+
T Consensus 693 ------------r~gN---ipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~--Dh~GF~LLn~i~~~~--- 752 (960)
T KOG1992|consen 693 ------------RSGN---IPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAN--DHHGFYLLNTIIESI--- 752 (960)
T ss_pred ------------hcCC---cHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCccc--chhHHHHHHHHHhcC---
Confidence 1111 13455566666555444443 4466677777776653211 124566666666643
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhh
Q 001945 704 FQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLRE 774 (992)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 774 (992)
.+..+.++...++..+++.++....+..+......+.-..-..|...+.+.++.+-+.++..+..
T Consensus 753 ------~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e 817 (960)
T KOG1992|consen 753 ------PPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLE 817 (960)
T ss_pred ------CHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHH
Confidence 34556778888888888888766555544444444443333344333344444444444444433
No 12
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-25 Score=232.54 Aligned_cols=713 Identities=17% Similarity=0.200 Sum_probs=454.4
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 160 i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
+...+... ++ ..+..|..+++.+..-+..... ...|..++|.++.. -+ ++..+...+..+..+......
T Consensus 365 i~~llLkv-KN-G~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~---tL---eDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 365 IMRLLLKV-KN-GTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSP---TL---EDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred HHHHHHhh-cC-CCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCc---cc---cchhhhhHHHHHHHHHHhhcc
Confidence 44444333 34 5677888888887665544321 11133344433321 11 233455556666666554444
Q ss_pred chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHH
Q 001945 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (992)
Q Consensus 240 ~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (992)
...+++..++-.+-.+.-++ +...|...-++++.++...+- ..++..+ ..|-+..|..+|+..
T Consensus 434 lvrpYVhkILvViepllide--d~yar~egreIisnLakaaGl--------a~mistm-------rpDidn~deYVRntt 496 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLIDE--DYYARVEGREIISNLAKAAGL--------ATMISTM-------RPDIDNKDEYVRNTT 496 (1172)
T ss_pred cchhceeeeEEEeecceecc--hHHHhhchHHHHHHHHHHhhh--------HHHHHhh-------cCCcccccHHHHHHH
Confidence 44455444322111111111 334455556677777654321 1111111 112123344789999
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHH
Q 001945 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (992)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (992)
+.++..++.++| +|.++|++...+.|. +|+.|++++.+..+|+.-..-.+.+|+..++..+-.++.|.+..||..+
T Consensus 497 arafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~it 573 (1172)
T KOG0213|consen 497 ARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTIT 573 (1172)
T ss_pred HHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHH
Confidence 999999999998 467788888888887 9999999999999999876667789999999999999999999999999
Q ss_pred HHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHHhcCCCHhHH
Q 001945 399 SFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENSPRNLQ 477 (992)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~v~ 477 (992)
..+++.+++...|.-.+.++.++..|.+.....-...-.+-+++++.++......-. -|...++-.++.-+.+++.+++
T Consensus 574 Alalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 574 ALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 999999999988877788899999999988876666666677777777665544333 3455888889999999999999
Q ss_pred HHHHHHHHHHHHHhhccC-cccHHHHHHH-HHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc
Q 001945 478 ETCMSAIGSVAAAAEQAF-IPYAERVLEL-LKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (992)
Q Consensus 478 ~~a~~~l~~l~~~~~~~~-~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (992)
.-.+..+..++...|-.- --+ ..++|- +.........-+.+.-....++-..++..+|.. +++..++..+
T Consensus 654 kivLKVv~qcc~t~Gv~~~y~r-~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~-------~~v~R~v~~l 725 (1172)
T KOG0213|consen 654 KIVLKVVKQCCATDGVEPAYIR-FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD-------PIVSRVVLDL 725 (1172)
T ss_pred HHHHHHHHHHhcccCCCHHHHh-hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch-------HHHHHHhhhh
Confidence 999999988887655211 112 223333 333222111111222234667778888888874 6667777778
Q ss_pred CCCCchhhHHHHHHHHHHHHHcc-cCccCch-hhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcccc
Q 001945 556 GLEFSELREYTHGFFSNIAGVLE-DGFAQYL-PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (992)
Q Consensus 556 ~~~~~~~r~~~~~~~~~i~~~~~-~~~~~~l-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (992)
.++.+..|.-+..+..++...+| .+|..-+ ...+..++.+++.+..
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt-------------------------------- 773 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT-------------------------------- 773 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc--------------------------------
Confidence 88889999999999999999888 3555443 3455555555432110
Q ss_pred ceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q 001945 634 NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAK 713 (992)
Q Consensus 634 ~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 713 (992)
+-...+..++..+..++....||+++++..++..++.....+|..|+.+++.+...++.. +.+.
T Consensus 774 ----------~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc------~ee~ 837 (1172)
T KOG0213|consen 774 ----------EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC------GEEK 837 (1172)
T ss_pred ----------chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc------cHHH
Confidence 002345677888888999999999999999999999999999999999999887766532 2222
Q ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCC------CCC
Q 001945 714 AREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDND------SDI 787 (992)
Q Consensus 714 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~------~~~ 787 (992)
.+..+-..|.+.+. +.+++++.+++.++..+....|..-+.+-...++|.+.++|+.++.+.+.... .|-
T Consensus 838 ---~m~~lGvvLyEylg-eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 838 ---LMGHLGVVLYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred ---HHHHhhHHHHHhcC-cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 23333344445444 45899999999999999999997767777889999999999887653221000 000
Q ss_pred CCcccccchHHHHHHHHhHHHHHHHHhCC----C---hHHHHH------HHHHHHHHhhcCCCCccchhhHHHHHHHHHh
Q 001945 788 EDDDDTAHDEVIMDAVSDLLPAFAKSMGP----H---FAPIFA------KLFDPLMKFAKSSRPLQDRTMVVATLAEVAR 854 (992)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~---~~~~~~------~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~ 854 (992)
..+.-+..+|+-+ +.+++..+ ++++. . ...|+. .++..+++-|+-.+. ..|...--.++-+.+
T Consensus 914 gpE~v~aREWMRI--cfeLlelL-kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeR-q~RvcTtvaIaIVaE 989 (1172)
T KOG0213|consen 914 GPEYVSAREWMRI--CFELLELL-KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQER-QNRVCTTVAIAIVAE 989 (1172)
T ss_pred CcccCCHHHHHHH--HHHHHHHH-HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHH-Hhchhhhhhhhhhhh
Confidence 0111123344322 22332222 11111 1 111221 112222222221111 122211112222222
Q ss_pred hcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHH
Q 001945 855 DMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVA 934 (992)
Q Consensus 855 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~ 934 (992)
++| || +++|.+++--+.++..|.+..+.+++.+.++.++.-..|+-.+.+.|...+.+ .+...|+.+.+++.
T Consensus 990 ~c~----pF--tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD--rD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 990 TCG----PF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD--RDLVHRQTAMNVIK 1061 (1172)
T ss_pred hcC----ch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc--ccHHHHHHHHHHHH
Confidence 333 23 77899999889999999999999999999999986666776777666666654 44677888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHH
Q 001945 935 RMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLV 977 (992)
Q Consensus 935 ~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~ 977 (992)
.+....+ ..+..+.+-++|+.+ +.+-.|.++.+...+..-+
T Consensus 1062 Hl~Lg~~-g~g~eda~iHLLN~i-WpNIle~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1062 HLALGVP-GTGCEDALIHLLNLI-WPNILETSPHVIQAFDEAM 1102 (1172)
T ss_pred HHhcCCC-CcCcHHHHHHHHHHh-hhhhcCCChHHHHHHHHHH
Confidence 8887744 444455666666654 2244566666665555444
No 13
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-24 Score=225.00 Aligned_cols=585 Identities=17% Similarity=0.244 Sum_probs=380.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccC-----CCHHHHHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQL 78 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~-----~~~~~~~~ 78 (992)
+.++|++..|+|..++|.||++|++++++|+|...|..+..+. .+..+|.+|++++|+-+.++|+. +++|.+..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 4688999999999999999999999999999999999999764 47889999999999999999985 79999999
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC----CHHHHHHHHHHHHHhhhhhh----
Q 001945 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE----QEEHREVALILFSSLTETIG---- 150 (992)
Q Consensus 79 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~----~~~~~~~al~~l~~l~~~~~---- 150 (992)
||..++..+. |+++.+-.+.|..+++||+.++|. +||+++|.+.+.+++. |....+..+..+..+.+..+
T Consensus 82 iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyPr-eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 82 IRCNLLLHSD-EENNQLAIQNAVLISRIARLDYPR-EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999888 789999999999999999999995 9999999999998876 77788888888888877654
Q ss_pred ----hcccccHHHHHHHHHHhcCCC-----------C-------ChHHHHHHHHHHHHhhccc-CChhhHHHHHhhHHHH
Q 001945 151 ----QTFRPHFADMQALLLKCLQDE-----------T-------SNRVRIAALKAIGSFLEFT-NDGAEVVKFREFIPSI 207 (992)
Q Consensus 151 ----~~~~~~~~~i~~~l~~~l~~~-----------~-------~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~l 207 (992)
+.|.+..+.|++++...+-++ . ..++-..+++++.+++-+. ..+.... +.+-++.+
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~eRl~~F 238 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FFERLLQF 238 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HHHHHHHH
Confidence 234444555555443333221 0 1122233455666554332 1222111 33344444
Q ss_pred HHHHHH----HhhcCC----HHHHHHH----HHHHHHHhcCCccchHH--HHHHHHHHHHHHhhCC-----------CCC
Q 001945 208 LNVSRQ----CLASGE----EDVAVIA----FEIFDELIESPAPLLGD--SVKSIVHFSLEVSSSH-----------NLE 262 (992)
Q Consensus 208 l~~l~~----~l~~~~----~~~~~~~----~~~l~~l~~~~~~~~~~--~l~~li~~~~~~~~~~-----------~~~ 262 (992)
++.-.+ .+..+. .+..... ...+..+...+|-.|.. ..+..+++.+....++ ..-
T Consensus 239 ~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~f 318 (978)
T KOG1993|consen 239 LELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSF 318 (978)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccH
Confidence 443111 111111 1222222 33445556665544433 3333344433322221 111
Q ss_pred hHHHHHHHHHHHHHHHhhHhHh------------------h--hcCC-----hHHHHHHHhhh--------hccCCCCC-
Q 001945 263 PNTRHQAIQIISWLAKYKYNSL------------------K--KHKL-----VIPILQVMCPL--------LAESNEAG- 308 (992)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~------------------~--~~~~-----~~~il~~l~~~--------l~~~~~~~- 308 (992)
++.-.+++..+..+...+.... . ...| +..+.+.++.+ +.+|.+|.
T Consensus 319 e~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE 398 (978)
T KOG1993|consen 319 EEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPE 398 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChH
Confidence 2233344444443322110000 0 0011 11222233222 11232221
Q ss_pred ------C--CCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC---------hhhHHHHHHHHHHHhhcCHHH
Q 001945 309 ------E--DDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS---------PKYREAAVTAIGIISEGCAEW 371 (992)
Q Consensus 309 ------~--d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~---------~~~r~~al~~l~~i~~~~~~~ 371 (992)
. |-++..|.+|......+....++-..|.++.++....+... .-.+.|...++|..+....+.
T Consensus 399 ~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~ 478 (978)
T KOG1993|consen 399 GWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNI 478 (978)
T ss_pred HhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 12346788999999999999998888999888865443321 224455566666655543221
Q ss_pred HHHhHHHHHHHHHhhcC---CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC-ChHHHHHHHHHHHHHH
Q 001945 372 MKEKLESVLHIVLGALR---DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFC 447 (992)
Q Consensus 372 ~~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~ 447 (992)
.++-..+...++.-+. +....+|+..++.+|++...-.+ .+.-+-+-.++++.++|. +..|+..+..++...+
T Consensus 479 -~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~v 555 (978)
T KOG1993|consen 479 -LDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQK--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVV 555 (978)
T ss_pred -CCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheech--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhh
Confidence 1111223334444333 23456889999999999874221 223344667788888887 5678999999999999
Q ss_pred Hhh---ccccccchHHHHHHHHHHhcCC-CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHH
Q 001945 448 EDM---GEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (992)
Q Consensus 448 ~~~---~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 523 (992)
+.. ++.+.||++.+...+..++... .-+.|...+..++.++..+++.+.||..+++.++..+..... ++.-+|.+
T Consensus 556 DD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~a 634 (978)
T KOG1993|consen 556 DDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCA 634 (978)
T ss_pred hhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHH
Confidence 877 4678999999999999988753 456788999999999999999999999999998888876543 45567888
Q ss_pred HHHHHHHHHHhhchh--hccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhcc
Q 001945 524 ATELLGLVAESVGRA--RMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (992)
Q Consensus 524 ~~~~l~~l~~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~ 597 (992)
.+.++-.+..++|.+ .+.|++-++++....--+.++--+.+..+..|+...... ..+.|-+-.++|.++..++
T Consensus 635 lL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 635 LLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIE 709 (978)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHH
Confidence 899999999999853 345555566555333222223446788888888877655 3455556666677665543
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.96 E-value=1.4e-22 Score=216.30 Aligned_cols=580 Identities=19% Similarity=0.257 Sum_probs=379.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccC----------
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK---------- 70 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~---------- 70 (992)
.+.+..+|++.+|+|+.+|.+||..++++...++|...|.+++.+. ..-+.|+.|.+.|++.+.++|..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 3678899999999999999999999999999999999999999875 57889999999999999999976
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
.+.+.+..||+.|++++- +++..+|..++.+++.|+..++|+ .||+++|.+..++++.+.+..++|+.+|..+.....
T Consensus 83 ~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred ccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 356688899999999999 689999999999999999999995 999999999999999999999999999999987764
Q ss_pred hc-c----cccHHHHHHHHHHhcCCCCChHHHHHHH--HHHHHhhcccCChhh------HHHHHhhHHHHHHHHHHHhhc
Q 001945 151 QT-F----RPHFADMQALLLKCLQDETSNRVRIAAL--KAIGSFLEFTNDGAE------VVKFREFIPSILNVSRQCLAS 217 (992)
Q Consensus 151 ~~-~----~~~~~~i~~~l~~~l~~~~~~~vr~~a~--~~l~~l~~~~~~~~~------~~~~~~~~~~ll~~l~~~l~~ 217 (992)
.. . ....+.+.- ++..... .+...|..++ +.+.++........+ ...+.+.++++++.+.+.++-
T Consensus 161 ~ee~~~~~~~~l~~m~~-~f~~~~~-~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~ 238 (1005)
T KOG2274|consen 161 VEEMFFVGPVSLAEMYR-IFALTIV-YSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQR 238 (1005)
T ss_pred HHHHhcccccchhhhhh-hhhhccc-cchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 21 1 112222222 2233333 3334444333 444444332211111 122345566666666665543
Q ss_pred C---CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhh-------------C-------CCCChH------HHHH
Q 001945 218 G---EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS-------------S-------HNLEPN------TRHQ 268 (992)
Q Consensus 218 ~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~-------------~-------~~~~~~------~r~~ 268 (992)
+ +...+...+.++..+.+..|....+.....++..++... . .+.+++ .-..
T Consensus 239 ~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~ 318 (1005)
T KOG2274|consen 239 NDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQ 318 (1005)
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhh
Confidence 3 334677788888888888777666655544443332111 0 011111 2244
Q ss_pred HHHHHHHHHHhhH--hHhhhcCChHHHHHHHhhhh--c-----cCCCC------CCCCCCchHHHHHHHHHHHHHHcchh
Q 001945 269 AIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLL--A-----ESNEA------GEDDDLAPDRAAAEVIDTMALNLAKH 333 (992)
Q Consensus 269 a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l--~-----~~~~~------~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (992)
.++|+..++.... +.+.+ -+++++..+...+ . .|..| ++++.+..|..+...+-.+...++..
T Consensus 319 i~eF~s~i~t~~~~~~ti~~--~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~ 396 (1005)
T KOG2274|consen 319 IVEFLSTIVTNRFLSKTIKK--NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNE 396 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccch
Confidence 5666666654321 11222 1222222222111 1 12211 23444577777777777788888855
Q ss_pred chHHHHHHHHhh---------hcCC-ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHH
Q 001945 334 VFPPVFEFASVS---------CQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFAL 402 (992)
Q Consensus 334 ~~~~~~~~l~~~---------l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l 402 (992)
...++.+..... ++.+ .|+...+.+.+......+- .....+..+...+...+. ...|..-..+++++
T Consensus 397 ~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i 474 (1005)
T KOG2274|consen 397 GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQESPFLLLRAFLTI 474 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 555555543322 2233 4777777777776666432 223445566666666665 56677667899999
Q ss_pred HHhHhhhcHHHHhhhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHH
Q 001945 403 GQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCM 481 (992)
Q Consensus 403 ~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~ 481 (992)
+.++.... ...+.+..++...+..+. +..+.++.+|+.++..++ ..+-+.++.+.+++.|..+......++-...+
T Consensus 475 ~~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llm 551 (1005)
T KOG2274|consen 475 SKFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLM 551 (1005)
T ss_pred HHHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHH
Confidence 98887742 112334445566665555 555678888887777666 23457799999999999999888888888999
Q ss_pred HHHHHHHHHhhccCcccHHHHHHHHHHHHhcc-ChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC-
Q 001945 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLT-NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF- 559 (992)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~- 559 (992)
++++.++..-++.-...-..+.|....++... +|+ .+...+.+++-.+... .....|+...+++.+++.++.+.
T Consensus 552 E~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 552 EALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred HHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCccc
Confidence 99999887665543333455677777766543 444 3334556666665542 23567777788888888777554
Q ss_pred ---chhhHHHHHHHHHHHHHcccCccC-chhhhhHHHHhhc
Q 001945 560 ---SELREYTHGFFSNIAGVLEDGFAQ-YLPLVVPLAFSSC 596 (992)
Q Consensus 560 ---~~~r~~~~~~~~~i~~~~~~~~~~-~l~~i~~~l~~~~ 596 (992)
+..-..++..+..+.+..++.+.. ++...+|.+.++.
T Consensus 628 ~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 628 KAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 556667788888888887766443 2345566666543
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=3e-21 Score=195.11 Aligned_cols=584 Identities=14% Similarity=0.160 Sum_probs=408.1
Q ss_pred chHHHHHHHHHHHHH-HcchhchHHHHHHHHhhhcCCCh-hhHHHHHHHHHHHhhcC-HHHHHHhHHHHHH-HHHhhcC-
Q 001945 314 APDRAAAEVIDTMAL-NLAKHVFPPVFEFASVSCQNASP-KYREAAVTAIGIISEGC-AEWMKEKLESVLH-IVLGALR- 388 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~-~~~~~~~~~~~~~l~~~l~~~~~-~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~-~l~~~l~- 388 (992)
.....|...+..++. .++...||.++..+.....+..+ ..+..++.++|.+++.. |+.+......++- .+...++
T Consensus 109 r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~ 188 (858)
T COG5215 109 RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKN 188 (858)
T ss_pred HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhccc
Confidence 455667778877775 46688999999988877766544 46778899999999864 5455555555554 4444454
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHh--hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHH-H
Q 001945 389 DPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGK-L 465 (992)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~-l 465 (992)
.++..||.+|+.+|-.-+.+....+.. .-.-++..++..-+.++..++..+..||..+..-..+.+.+|+++.+-. .
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998866655443321 1233677778888888999999999999999988888888999976655 4
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHHHhh--ccCccc---------------HHHHHHHHHHHHhcc----ChhhhHhHHHH
Q 001945 466 LAALENSPRNLQETCMSAIGSVAAAAE--QAFIPY---------------AERVLELLKIFMVLT----NDEDLRSRARA 524 (992)
Q Consensus 466 ~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~---------------~~~~~~~l~~~l~~~----~~~~~~~~~~~ 524 (992)
...+.+++.++...+.+.|++++..-- +.-..| ...++|.|.+++... .++++.....|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 556788899999999999999886321 111122 233788888888752 23345555567
Q ss_pred HHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc-CccCchhhhhHHHHhhccCCCCCc
Q 001945 525 TELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED-GFAQYLPLVVPLAFSSCNLDDGSA 603 (992)
Q Consensus 525 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~-~~~~~l~~i~~~l~~~~~~~~~~~ 603 (992)
-.|+..+++..|...+.| ++..+-+.++.++|.-|+.+..+||.+...-.+ -..+|.|+.+|.+.+..+ |
T Consensus 349 ~sCLqlfaq~~gd~i~~p----Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D---- 419 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRP----VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-D---- 419 (858)
T ss_pred HHHHHHHHHHhhhHhHHH----HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-c----
Confidence 888888888888755554 445555678889999999999999999876554 367889999999986543 1
Q ss_pred cCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccch--HHHHHHH-HHhcccC
Q 001945 604 VDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPF--LEESLKI-LVRHASY 680 (992)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~--~~~~~~~-l~~~~~~ 680 (992)
+.+.+|..+.+++|.++.+....+.|. +...... ++.+.+.
T Consensus 420 ------------------------------------~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 420 ------------------------------------SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred ------------------------------------ceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 122368889999999999998887774 3333333 3333332
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHhCCcccHH
Q 001945 681 FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-DDDKDVVAQACTSIVEIINDYGYMAVEP 759 (992)
Q Consensus 681 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 759 (992)
+.+..........++..+.... .+.+..+.+++..++..|++.... ..+.+.+.+.+++++.++.... ....+
T Consensus 464 --p~~~~ncsw~~~nlv~h~a~a~---~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~-d~V~~ 537 (858)
T COG5215 464 --PFRSINCSWRKENLVDHIAKAV---REVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP-DAVSD 537 (858)
T ss_pred --chHHhhhHHHHHhHHHhhhhhh---ccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc-hhHHH
Confidence 2333333444444544443322 224566788888999999887542 3466778899999999987655 33333
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCc
Q 001945 760 YMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPL 839 (992)
Q Consensus 760 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 839 (992)
....++....+-+.....-+... -+.+| .-.-+.+......++..++...+++..+.-++++..+++.+.+.++.
T Consensus 538 ~~a~~~~~~~~kl~~~isv~~q~--l~~eD---~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t 612 (858)
T COG5215 538 ILAGFYDYTSKKLDECISVLGQI--LATED---QLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPT 612 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--hhhHH---HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCc
Confidence 33333333333222211100000 00000 11123456677788889999999988888888888888888776654
Q ss_pred cchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC
Q 001945 840 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS 919 (992)
Q Consensus 840 ~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 919 (992)
......+..++.+...+++....|++.++|.+.+.++..|.-|...|...+|.++...+.+|.+|...+...|.+.++.+
T Consensus 613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 44445555555555677777889999999999999998899999999999999999999999999999999999999876
Q ss_pred CCChhhHhhHHHHHHHHHHhCCCCC-C-hhhHHHHH
Q 001945 920 EPDDAVRDNAAGAVARMIMVNPQSI-P-LNQVLPVL 953 (992)
Q Consensus 920 ~~~~~~~~n~~~~l~~l~~~~~~~~-~-~~~~l~~~ 953 (992)
..+..++-...|++|.|....+..+ + ++.++-.+
T Consensus 693 ~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 693 ATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred hhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666677778899999988766554 3 56555444
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.5e-20 Score=195.58 Aligned_cols=672 Identities=13% Similarity=0.167 Sum_probs=445.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------cccC----
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWAK---- 70 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~--p~-~~~~l~~il~~-~~~~~~r~~a~~~l~~~i~~------~~~~---- 70 (992)
+-.+|-...++.+.-|+.|-..|..=..+ ++ .+..++-++-+ +-+.+-|++-.-.+.+.+-+ .|.+
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 44556666788889999999988433322 32 23334444433 33555666666555555422 1111
Q ss_pred ------CCHHHHH-----HHHH---------HHHHHHhh---cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhh
Q 001945 71 ------LSPQLKQ-----LVKQ---------SLIESITL---EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (992)
Q Consensus 71 ------~~~~~~~-----~i~~---------~ll~~l~~---~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l 127 (992)
++++... +|.. ..+..+.. ..++.||+..+.+++.+++.. ..|.++|+|...+
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkavc 520 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAVC 520 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHHh
Confidence 2222221 1222 12222222 258999999999999999875 5789999999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001945 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (992)
Q Consensus 128 ~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 206 (992)
.|. +|..|+.+..+..+++...+-..-+|+..++.++..++.| .+..||.-+..+++.+++...+ .....|...
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~D-e~qkVR~itAlalsalaeaa~P-ygie~fDsV--- 595 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKD-EQQKVRTITALALSALAEAATP-YGIEQFDSV--- 595 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcc-cchhhhhHHHHHHHHHHHhcCC-cchHHHHHH---
Confidence 987 7899999999999999999988889999999999999999 9999999999999999887632 334445444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHH-HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh---Hh
Q 001945 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDS-VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YN 282 (992)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~ 282 (992)
+.-|++.+..........-++++.-++....+....+ -..++-.+..-+..+ |++.+...+.++..++... +.
T Consensus 596 -lkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~ 672 (1172)
T KOG0213|consen 596 -LKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPA 672 (1172)
T ss_pred -HHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHH
Confidence 4444444444444444445555555544332222222 223333444444444 6777777788777776532 11
Q ss_pred Hhhh------------------cCChHHHHHHHhhhhccCC---------CCCCCCCCchHHHHHHHHHHHHHHcch---
Q 001945 283 SLKK------------------HKLVIPILQVMCPLLAESN---------EAGEDDDLAPDRAAAEVIDTMALNLAK--- 332 (992)
Q Consensus 283 ~~~~------------------~~~~~~il~~l~~~l~~~~---------~~~~d~~~~~~~~a~~~l~~l~~~~~~--- 332 (992)
..+. .....+++.....+..... ++-.|+....|+...+.++.+...+|.
T Consensus 673 y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di 752 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI 752 (1172)
T ss_pred HHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc
Confidence 1111 0011122222111111111 111233345677788888888887772
Q ss_pred --hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001945 333 --HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 333 --~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
.....++.-+.-.++.++-... ..+..++.++.....-.+++++.|+..++..|+++++.||..|+..++.++..++
T Consensus 753 derleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 753 DERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 2223444444444444333222 4566788888777767789999999999999999999999999999999988775
Q ss_pred HHHHh-hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 411 PEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 411 ~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
....+ .+..+=..|...+....+.|--..+.++..++...+ ..+.|-..++++.|.+.|.+.+.+++++++..++.++
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA 911 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH
Confidence 43222 223344557788998899999999999999988774 3466778899999999999999999999999999999
Q ss_pred HHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHH
Q 001945 489 AAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHG 568 (992)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~ 568 (992)
...++.+.. .+.|.+...++..-..-...+|..+.+++|.|++++|+. +++..+++.++......|-...-
T Consensus 912 drgpE~v~a--REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnnLkvqeRq~RvcTtv 982 (1172)
T KOG0213|consen 912 DRGPEYVSA--REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNNLKVQERQNRVCTTV 982 (1172)
T ss_pred hcCcccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhcchHHHHHhchhhhh
Confidence 988774331 233433333332211223456778999999999999994 78888888888776777777777
Q ss_pred HHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHH
Q 001945 569 FFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAA 648 (992)
Q Consensus 569 ~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a 648 (992)
+++-+++.+|+ | .++|.|++-.. +....++.+.
T Consensus 983 aIaIVaE~c~p-F-----tVLPalmneYr-----------------------------------------tPe~nVQnGV 1015 (1172)
T KOG0213|consen 983 AIAIVAETCGP-F-----TVLPALMNEYR-----------------------------------------TPEANVQNGV 1015 (1172)
T ss_pred hhhhhhhhcCc-h-----hhhHHHHhhcc-----------------------------------------CchhHHHHhH
Confidence 88888887774 2 47888885332 1122356778
Q ss_pred HHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHH
Q 001945 649 TQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRT 728 (992)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 728 (992)
+++++.+.+..|+.-..|+-.+.+.+...+.+.+..-|..|..++..+.-.+.+. + ..+.+..++..+-|.++
T Consensus 1016 Lkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~----g-~eda~iHLLN~iWpNIl-- 1088 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT----G-CEDALIHLLNLIWPNIL-- 1088 (1172)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc----C-cHHHHHHHHHHhhhhhc--
Confidence 8899999999988888999999999999888888778998988887765432211 1 12333444444444432
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHhCCc
Q 001945 729 MTEDDDKDVVAQACTSIVEIINDYGYM 755 (992)
Q Consensus 729 ~~~~~~~~~~~~~~~~l~~~~~~~g~~ 755 (992)
++.+.++.+..+++..+-..+|+.
T Consensus 1089 ---e~sPhviqa~~e~~eg~r~~Lg~~ 1112 (1172)
T KOG0213|consen 1089 ---ETSPHVIQAFDEAMEGLRVALGPQ 1112 (1172)
T ss_pred ---CCChHHHHHHHHHHHHHHHHhchH
Confidence 457888888888888887778853
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-19 Score=185.90 Aligned_cols=498 Identities=18% Similarity=0.171 Sum_probs=325.4
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccCC--------
Q 001945 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKL-------- 71 (992)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~~-------- 71 (992)
|.+++.+++.++++.|...|..||+.|+++.++|+|+..+++++.++ -++++|+.|++++|+.+.+.|+..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 77899999999999999999999999999999999999999999876 488999999999999999999873
Q ss_pred -CHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 72 -SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 72 -~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
.++.+..+++.++..+.. ++...|...-.++..|...++|...|+ +.|....++.+++..+...|+.|+..++....
T Consensus 81 ek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 81 EKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 234555555555555553 566677777777788889999988999 99999999999999999999999999997642
Q ss_pred -------hcccccHHHHHHHHHHhcC---CCC---ChHHHHHHHHHHHHhhcccCChhh---HHHHHhhHHHHHHHHHHH
Q 001945 151 -------QTFRPHFADMQALLLKCLQ---DET---SNRVRIAALKAIGSFLEFTNDGAE---VVKFREFIPSILNVSRQC 214 (992)
Q Consensus 151 -------~~~~~~~~~i~~~l~~~l~---~~~---~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~ll~~l~~~ 214 (992)
..+.+....+.|++.+.-+ +.+ ..++-.-.++.+.+.+-+. -+.. ...+..++...+..+.+-
T Consensus 159 wk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~-LP~~lsa~e~f~sw~ql~l~i~qkp 237 (970)
T COG5656 159 WKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYS-LPDFLSAIETFSSWFQLSLRILQKP 237 (970)
T ss_pred hhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhh-CCHHHccchhhHHHHHHHHHHHcCC
Confidence 1122334444555554322 111 2223233333333322221 1111 122333333344333221
Q ss_pred hh----cCCHHH---------HHHHHHHHHHHhcCCcc------------chHHHHHHHHHHHHHHhh---CCC--CChH
Q 001945 215 LA----SGEEDV---------AVIAFEIFDELIESPAP------------LLGDSVKSIVHFSLEVSS---SHN--LEPN 264 (992)
Q Consensus 215 l~----~~~~~~---------~~~~~~~l~~l~~~~~~------------~~~~~l~~li~~~~~~~~---~~~--~~~~ 264 (992)
+. +-++++ .+.|+-.+.++.++..+ .+...++.+++..++... +++ .++.
T Consensus 238 lp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~ 317 (970)
T COG5656 238 LPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDI 317 (970)
T ss_pred CCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchH
Confidence 11 113333 34555555555544321 122345555555554332 222 2333
Q ss_pred HHHHHHHHHHHHHHhhHhHhhh--cCChHHHH-HHHhhhhccCCCCCC-----------------CCCCchHHHHHHHHH
Q 001945 265 TRHQAIQIISWLAKYKYNSLKK--HKLVIPIL-QVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVID 324 (992)
Q Consensus 265 ~r~~a~~~l~~l~~~~~~~~~~--~~~~~~il-~~l~~~l~~~~~~~~-----------------d~~~~~~~~a~~~l~ 324 (992)
.-.....|+..++. ++..++ .+.+.-++ ..++|.++-.+++.| ++..++.-++..++-
T Consensus 318 ~LYfi~~Fve~cv~--~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~ 395 (970)
T COG5656 318 ELYFIDFFVELCVD--ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLI 395 (970)
T ss_pred HHHHHHHHHHHHhh--hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHH
Confidence 32222223333332 222221 12333333 456777765443211 122355556777777
Q ss_pred HHHHHcchhchHHHHHHHHhhhcC--------CChhhHHHHHHHHHHHhh--cCHHHHHHhHH-HHHHHHHhhcCCCChh
Q 001945 325 TMALNLAKHVFPPVFEFASVSCQN--------ASPKYREAAVTAIGIISE--GCAEWMKEKLE-SVLHIVLGALRDPEQF 393 (992)
Q Consensus 325 ~l~~~~~~~~~~~~~~~l~~~l~~--------~~~~~r~~al~~l~~i~~--~~~~~~~~~l~-~i~~~l~~~l~d~~~~ 393 (992)
.+....++..+..+++++...+.. ++.+..++|+..++.+.. ..+......++ -+++++++.++++.-.
T Consensus 396 ~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygf 475 (970)
T COG5656 396 ISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGF 475 (970)
T ss_pred HHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccc
Confidence 777777888888888888776621 356778899999998887 22233333333 4678999999999999
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHhcC
Q 001945 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALEN 471 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~~ 471 (992)
.|..||..++.+.+.++.. ..+.++......++++..-.|+..|.-|+..++.+. ...+..+.+..|+.|+.+-+.
T Consensus 476 L~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 476 LKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred hHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 9999999999998887642 234556677778888877889999999999998765 345778999999999888665
Q ss_pred CCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHH
Q 001945 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKI 508 (992)
Q Consensus 472 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 508 (992)
-+.++- -.++..++...++.+.||.++++..|.+
T Consensus 554 feiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 554 FEIDPL---SMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred ccchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 554443 3455667788888999999988876655
No 18
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.7e-20 Score=192.01 Aligned_cols=582 Identities=14% Similarity=0.198 Sum_probs=359.6
Q ss_pred ChHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccCCCHHHHH
Q 001945 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (992)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 77 (992)
|++.++|++.+...| |...|++|.+.+++++..|+.|..+.+++... .++.+|.++...|...++..+...+...+.
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 788999999999766 99999999999999999999999999999764 789999999999999988888888888899
Q ss_pred HHHHHHHHHHh-----hc---CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCH-HHHHHHHHHHHHhhhh
Q 001945 78 LVKQSLIESIT-----LE---HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTET 148 (992)
Q Consensus 78 ~i~~~ll~~l~-----~~---~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~~~ 148 (992)
.+|..+..-+. ++ .++.+++++++.++.+.-..+|. .|+.++..+...++-+.. .-....++++..+-++
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 99988877655 22 36889999999999999999995 899999999888764331 1123333444433333
Q ss_pred hhhc------------------c-cccHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001945 149 IGQT------------------F-RPHFADMQALLLKCLQ---DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (992)
Q Consensus 149 ~~~~------------------~-~~~~~~i~~~l~~~l~---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 206 (992)
+.+. + ...++.+.....++++ ...++.+-...++|++++++|++-. ... ...
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdIn-LIa-Nd~---- 233 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDIN-LIA-NDY---- 233 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhh-hhh-chh----
Confidence 2211 1 1234455555555443 2137888888899999999998421 111 112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch---------------------------------------------
Q 001945 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL--------------------------------------------- 241 (992)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~--------------------------------------------- 241 (992)
.++.+...+. -++.|.+|++|+.+++...-+-+
T Consensus 234 f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~ 311 (980)
T KOG2021|consen 234 FLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT 311 (980)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence 2333333332 24566677777666654321100
Q ss_pred ------------------HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH--hhh--cCChHHHHHHHhh
Q 001945 242 ------------------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LKK--HKLVIPILQVMCP 299 (992)
Q Consensus 242 ------------------~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~--~~~~~~il~~l~~ 299 (992)
...+..+++++++.+.+. +++.....+.||......-.+. ... ...+..++..++.
T Consensus 312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~k 389 (980)
T KOG2021|consen 312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFK 389 (980)
T ss_pred hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHH
Confidence 011112334444444333 2333334444444332211100 111 1245556666655
Q ss_pred hhcc-----CCCC-CCCCC----CchHHHHHHHHHHHHHHcchhchHHHHHHHHhh---hcCCChhhHHHHHHHHHHHhh
Q 001945 300 LLAE-----SNEA-GEDDD----LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVS---CQNASPKYREAAVTAIGIISE 366 (992)
Q Consensus 300 ~l~~-----~~~~-~~d~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~---l~~~~~~~r~~al~~l~~i~~ 366 (992)
.++. ++++ .++|+ .+.|+..-..++.+...-++-....+-+-+... .+..+|..-+.|+..+..++|
T Consensus 390 qicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE 469 (980)
T KOG2021|consen 390 QICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGE 469 (980)
T ss_pred HHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 5543 3332 11111 234555555555555544433333333333322 344689999999999999998
Q ss_pred cCHHHH--------H--HhHHHHHHHHHhh--cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHH--HhcccCC
Q 001945 367 GCAEWM--------K--EKLESVLHIVLGA--LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL--NALEDES 432 (992)
Q Consensus 367 ~~~~~~--------~--~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~--~~l~~~~ 432 (992)
+.+... . ..+..+++.++.. +.++|+.|+..-+..+.++...+..+ ..+++.++.+++ .++++.+
T Consensus 470 ~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-sq~ip~vL~aFld~rglhn~n 548 (980)
T KOG2021|consen 470 CLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-SQKIPLVLNAFLDSRGLHNKN 548 (980)
T ss_pred ccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHccchhccccc
Confidence 754321 1 1233455555443 45789999999999999988877433 346667777776 3677888
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC------------HhHHHHHHHHHHHHHHHh---------
Q 001945 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSAIGSVAAAA--------- 491 (992)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~~v~~~a~~~l~~l~~~~--------- 491 (992)
.+||.+|...+.++++...+.+.||.+.++..+..+|...- .+-+...++++|.++...
T Consensus 549 e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaa 628 (980)
T KOG2021|consen 549 ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAA 628 (980)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999983211 122345556666554321
Q ss_pred --hccCcccH-HHHHHHHHHHHhccChhhhHh----HHHHHHHHHHHHHhhchhhcc-------CChHHHHHHHHhccC-
Q 001945 492 --EQAFIPYA-ERVLELLKIFMVLTNDEDLRS----RARATELLGLVAESVGRARME-------PILPPFVEAAISGFG- 556 (992)
Q Consensus 492 --~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~----~~~~~~~l~~l~~~~~~~~~~-------~~~~~i~~~l~~~l~- 556 (992)
...+.|.. +..+..+...+.. +++... ...++.+++.+++++...... .....+.+.++-.+.
T Consensus 629 y~~~litpl~~~~~igl~~a~las--de~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~ 706 (980)
T KOG2021|consen 629 YANTLITPLILDQIIGLLFAQLAS--DEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSF 706 (980)
T ss_pred HHhcccChHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhh
Confidence 11222222 2223333333332 222111 224556667766655321100 011233333333222
Q ss_pred -CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001945 557 -LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (992)
Q Consensus 557 -~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~ 596 (992)
.....+|..+...+++|+.++|+++.||+|+.++.+++..
T Consensus 707 f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 707 FNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred ccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 2256799999999999999999999999999999999654
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=2.3e-21 Score=197.52 Aligned_cols=688 Identities=15% Similarity=0.149 Sum_probs=415.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHH
Q 001945 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSI 248 (992)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 248 (992)
++ ..+..|..+++.|..-+..... ...|..++|.++.. -+. +..+...+..+..+.........+++..+
T Consensus 178 KN-G~~~mR~~~lRiLtdkav~fg~---~~vfnkvLp~lm~r---~Le---Dqerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 178 KN-GGKRMRMEGLRILTDKAVNFGA---AAVFNKVLPMLMSR---ELE---DQERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred cc-CCchhhHHHHHHHHHHhhcccH---HHHHHHHHHHHHhh---hhh---hhhhHhHHHHHHHHHHhcccccccceeeE
Confidence 44 5677888888888665544421 22355555555542 122 23344455555555443322223333222
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH
Q 001945 249 VHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (992)
Q Consensus 249 i~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (992)
+-..-...-+ .+...|...-+++.+++...+-. + + ++.-..|-+..|..+|+....+.+.++.
T Consensus 248 LvVv~pllid--ed~~~r~~g~eii~nL~~~~Gl~-----~---~-------vs~mrpDi~~~deYVRnvt~ra~~vva~ 310 (975)
T COG5181 248 LVVVGPLLID--EDLKRRCMGREIILNLVYRCGLG-----F---S-------VSSMRPDITSKDEYVRNVTGRAVGVVAD 310 (975)
T ss_pred EEEeeccccC--ccHHHhcccHHHHHHHHHHhccc-----e---e-------eeeccCCcccccHHHHHHHHHHHHHHHH
Confidence 2111111111 13344444445555555332210 0 0 1111122223344789999999999999
Q ss_pred HcchhchHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001945 329 NLAKHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 329 ~~~~~~~~~~~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (992)
++| .+.++|++.....|. +|+.|++++.+..+|++-..-...+|+..++..+-.++.|.+..||..+..+++.+++
T Consensus 311 alg---v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae 387 (975)
T COG5181 311 ALG---VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAE 387 (975)
T ss_pred hhC---cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHH
Confidence 998 356677777777776 8999999999999999977777789999999999999999999999999999999999
Q ss_pred hhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 408 YLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 408 ~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
...|.-.+.++.++..|.+..+..-..+-.+-+++.+.++--..+ ..--+....++.+...+++++.+.+...+.....
T Consensus 388 ~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~ 467 (975)
T COG5181 388 LVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERI 467 (975)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHH
Confidence 988877778888888888877665444444444454444433322 2334556888899999999998887776655443
Q ss_pred HHHHhhccCcccHHHHHHHHHHHHhcc-ChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHH
Q 001945 487 VAAAAEQAFIPYAERVLELLKIFMVLT-NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (992)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (992)
....-+..-..+.+++.|.+.+.+-.. ...+.+.-.....+-..+++..|. +.+...+++-+.++..+.|.-
T Consensus 468 C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~-------~~v~~kil~~~~De~ep~r~m 540 (975)
T COG5181 468 CDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD-------PRVSRKILEYYSDEPEPYRKM 540 (975)
T ss_pred HhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC-------hHHHHHHHhhccCCcchhhhh
Confidence 333222333334467776665443211 001111111223444555655554 356667777788888889999
Q ss_pred HHHHHHHHHHHcc-cCccCchh-hhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhh
Q 001945 566 THGFFSNIAGVLE-DGFAQYLP-LVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLD 643 (992)
Q Consensus 566 ~~~~~~~i~~~~~-~~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (992)
...+..++...+| .+|..-+. ..+..++.+++.++.. +
T Consensus 541 ~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-------~--------------------------------- 580 (975)
T COG5181 541 NAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-------V--------------------------------- 580 (975)
T ss_pred hhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-------c---------------------------------
Confidence 9999999998888 35554443 3455555555422110 0
Q ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 001945 644 EKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMN 723 (992)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (992)
...+.+++....+++-...||+..++..+++.+++..+++|..|+.+.+.+...++.. ++ .. .+..+-.
T Consensus 581 --~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c----~e--~~---~l~klg~ 649 (975)
T COG5181 581 --GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC----GE--TK---ELAKLGN 649 (975)
T ss_pred --cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc----ch--HH---HHHHHhH
Confidence 0011222222333455668999999999999999999999999999887776654421 11 11 2233333
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCC------CCCCCcccccchH
Q 001945 724 IFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDND------SDIEDDDDTAHDE 797 (992)
Q Consensus 724 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~ 797 (992)
.|.+.+. +.++++..+++.++..+....+-..+.|-...++|.+.++|+.++.+...... .+...+.....+|
T Consensus 650 iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW 728 (975)
T COG5181 650 ILYENLG-EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW 728 (975)
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH
Confidence 4444443 45899999999999999888887677788899999999999887643211100 0000011123344
Q ss_pred HHHHHHHhHHHHHHHHhCC---Ch---HHHHH------HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHh
Q 001945 798 VIMDAVSDLLPAFAKSMGP---HF---APIFA------KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVD 865 (992)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~---~~---~~~~~------~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~ 865 (992)
+-+ +.+++..+-...++ .. ..++. .++..+++-++-.+. ..|...--.++-+.+++|+ |
T Consensus 729 MRI--cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeR-q~RvctsvaI~iVae~cgp----f-- 799 (975)
T COG5181 729 MRI--CFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQER-QQRVCTSVAISIVAEYCGP----F-- 799 (975)
T ss_pred HHH--HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHH-HhhhhhhhhhhhhHhhcCc----h--
Confidence 432 23333333222211 11 11121 222233333322211 1232222223333345553 3
Q ss_pred hhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCCC
Q 001945 866 RVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP 945 (992)
Q Consensus 866 ~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~~ 945 (992)
+++|.++.--..++..|.+....+++.+.++.++.-..|+-.+.+.+...+.+ .+..-|+.+...+-.+...+|..-.
T Consensus 800 sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD--rD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 800 SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD--RDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc--cchHHHHHHHHHHHHHhcCCCCccc
Confidence 67899999888999999999999999999999987777777777776666654 4467788888888888888665443
Q ss_pred hhhHHHHHHhhC
Q 001945 946 LNQVLPVLLKVL 957 (992)
Q Consensus 946 ~~~~l~~~l~~l 957 (992)
.+..-++++.|
T Consensus 878 -eda~IHLlNll 888 (975)
T COG5181 878 -EDAAIHLLNLL 888 (975)
T ss_pred -HHHHHHHHHHh
Confidence 33333344433
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=1.8e-17 Score=199.57 Aligned_cols=814 Identities=15% Similarity=0.147 Sum_probs=489.4
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhC-C----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhccc
Q 001945 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAK-D----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA 69 (992)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~l~~~~~-~----------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~ 69 (992)
.++..+++.+.++ +.+.|++|...|..+.+ + .++++.|...|.+ .++.+|..|+..|.+.-.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~---- 87 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCK---- 87 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhc----
Confidence 4667888888866 77889999998877753 2 3467888888864 568888888866655521
Q ss_pred CCCHHHH-----HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC------cchHHHHHHhhcCCC---HHHH
Q 001945 70 KLSPQLK-----QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW------PDLLPFLFQFSQSEQ---EEHR 135 (992)
Q Consensus 70 ~~~~~~~-----~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~------~~ll~~l~~~l~~~~---~~~~ 135 (992)
.++.+ ......|+..|.+ .+...|..++.+|..++.....+..| ...+|.|..++++++ ..++
T Consensus 88 --~e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 88 --EEDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred --CHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 12222 2233467788874 68999999999999998753111122 667899999998763 2344
Q ss_pred HHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHH
Q 001945 136 EVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (992)
Q Consensus 136 ~~al~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 214 (992)
..+..+|..++..-+..-...+ ...++.+..++++ +++.++..|+.++..++...++......-...+|.+++.+..
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s- 242 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ- 242 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc-
Confidence 5566788877754432211111 1367888889998 889999999999988876654322211223556777765531
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCC-------CChHHHHHHHHHHHHHHHhhHhHhhh
Q 001945 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHN-------LEPNTRHQAIQIISWLAKYKYNSLKK 286 (992)
Q Consensus 215 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (992)
+.++.++..|.++|..++...+..-+..+. ..++.++.....++ .....++.+...+..++...+..+..
T Consensus 243 --g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~ 320 (2102)
T PLN03200 243 --GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILY 320 (2102)
T ss_pred --CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence 245688999999999998765443322221 12333333333221 23456888888888887643221100
Q ss_pred -------cCChHHH------HHHHhhhhccCCCCCCCCCCchH----HHHHHHHHHHHHHcc-hhchHH-----------
Q 001945 287 -------HKLVIPI------LQVMCPLLAESNEAGEDDDLAPD----RAAAEVIDTMALNLA-KHVFPP----------- 337 (992)
Q Consensus 287 -------~~~~~~i------l~~l~~~l~~~~~~~~d~~~~~~----~~a~~~l~~l~~~~~-~~~~~~----------- 337 (992)
......+ +..++..+...++ ..+ ..+...|..+.++-. ......
T Consensus 321 L~~ll~s~rd~~~~ada~gALayll~l~d~~~~-------~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN 393 (2102)
T PLN03200 321 LGELSESPRSPAPIADTLGALAYALMVFDSSAE-------STRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGN 393 (2102)
T ss_pred HHHhhcccchHHHHHHHHhhHHHHHHhcCCchh-------hhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Confidence 0000000 0001111111000 000 011122222222111 000111
Q ss_pred -----------HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001945 338 -----------VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQF 405 (992)
Q Consensus 338 -----------~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (992)
..+.+..++...+...+..+++++..++.+..+...... ...+|.++..|.+++..+|..|+++++.+
T Consensus 394 ~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nL 473 (2102)
T PLN03200 394 AYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAIL 473 (2102)
T ss_pred hHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 122333445556678999999999999988665544433 23689999999999999999999999999
Q ss_pred HhhhcHHHHhh-hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHH
Q 001945 406 AEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMS 482 (992)
Q Consensus 406 ~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~ 482 (992)
+.......... -...+|.|++.|..++..+|..|+++|.+++.. +......+ ...++.|+.++.+.+...+..++.
T Consensus 474 a~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 474 TDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 87543322222 257899999999999999999999999999863 22223333 256778888899999999999999
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhh-ccCC--hHHHHHHHHhccCCCC
Q 001945 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR-MEPI--LPPFVEAAISGFGLEF 559 (992)
Q Consensus 483 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~--~~~i~~~l~~~l~~~~ 559 (992)
++.++....... .++.+..++...+ ...+..++..++.+......+. +... ....++.+.+.+++++
T Consensus 553 AL~nLi~~~d~~-------~I~~Lv~LLlsdd---~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs 622 (2102)
T PLN03200 553 TLTKLVRTADAA-------TISQLTALLLGDL---PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK 622 (2102)
T ss_pred HHHHHHhccchh-------HHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC
Confidence 999997653322 2244445554332 2334457777777654332211 1110 1245666677777788
Q ss_pred chhhHHHHHHHHHHHHHcccCccC-chhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeee
Q 001945 560 SELREYTHGFFSNIAGVLEDGFAQ-YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVR 638 (992)
Q Consensus 560 ~~~r~~~~~~~~~i~~~~~~~~~~-~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (992)
...++.+..++.+++..-...... .....+|.++..++.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss---------------------------------------- 662 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN---------------------------------------- 662 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc----------------------------------------
Confidence 899999999999998754432211 123456666665542
Q ss_pred cchhhhHHHHHHHHHHHHHHhcccccch-HH-HHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHH
Q 001945 639 TGVLDEKAAATQALGLFALHTKSSYAPF-LE-ESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKARE 716 (992)
Q Consensus 639 ~~~~~~k~~a~~~l~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 716 (992)
+..+.++.|.++|+.++......-..+ +. .+++.+++++...+.+++..|+.+|..++..... ...
T Consensus 663 -~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-----------~~e 730 (2102)
T PLN03200 663 -NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-----------AAE 730 (2102)
T ss_pred -CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH-----------HHH
Confidence 112467889999998885332221122 22 3567788888888999999999999988774221 111
Q ss_pred HH-HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcc-cHHHHH--HHHHHHHHHHhhhhhhcCCCCCCCCCCccc
Q 001945 717 IL-DTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA-VEPYMS--RLVDATLLLLREESTCQQPDNDSDIEDDDD 792 (992)
Q Consensus 717 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 792 (992)
+. ...++.|.+.+++. ..+.+..+..++..+.+...... +..+.. -.+..+...|+...
T Consensus 731 i~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~---------------- 793 (2102)
T PLN03200 731 ALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD---------------- 793 (2102)
T ss_pred HHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC----------------
Confidence 11 34567777777665 56778888888888877654221 222222 22333444454321
Q ss_pred ccchHHHHHHHHhHHHHHHHHhC-CChH-HHHHH------HHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhc-
Q 001945 793 TAHDEVIMDAVSDLLPAFAKSMG-PHFA-PIFAK------LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY- 863 (992)
Q Consensus 793 ~~~~~~~~~~~~~~l~~l~~~~~-~~~~-~~~~~------l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~- 863 (992)
.+......+.+.+..+++.-+ ..+. |-|.. =+..+.+++...++ .....|+.+|+.+|+.-+.-...+
T Consensus 794 --~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p-~~~~kai~il~~~~~~~~~~~~~~~ 870 (2102)
T PLN03200 794 --LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHP-LVQDKAIEILSRLCRDQPVVLGDLI 870 (2102)
T ss_pred --cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCCh-HHHHHHHHHHHHHhccChhHHHHHH
Confidence 111111135677777777522 2221 12221 23455566755554 578899999999987543322222
Q ss_pred --HhhhHHHHHHh-cCCCChHhHHHHHHHHHHHHhhcCcc------hhhHHHHHHHhhhhhhCC
Q 001945 864 --VDRVMPLVLKE-LASPDAMNRRNAAFCVGELCKNGGES------ALKYYGDILRGLYPLFGD 918 (992)
Q Consensus 864 --~~~~~~~ll~~-l~~~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~~~l~~l~~~l~~ 918 (992)
-+.-+..+.++ +++.+.+||-..+.-|-..++.+.+. -..|...+++.+..++..
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 871 ANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred hcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
Confidence 23334444443 45778888877666666566555442 235677788888877753
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.90 E-value=1.7e-19 Score=184.08 Aligned_cols=669 Identities=14% Similarity=0.150 Sum_probs=424.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CC-cHHHHHHHHh-cCCChhHHHHHHHHHHHhhhh------cccC----
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLR-TAKTPNVRQLAAVLLRKKITG------HWAK---- 70 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~--p~-~~~~l~~il~-~~~~~~~r~~a~~~l~~~i~~------~~~~---- 70 (992)
+.-+|-...++.+.-|+.+-..|..=..+ |+ .+..++-++- .+-+.+-|++-.-++.+.+-+ .|.+
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence 34455556678888899988888433333 33 2333444443 333555677666666655432 1211
Q ss_pred ------CCHHHH-----HHHHHHHHHH--Hh----------hcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhh
Q 001945 71 ------LSPQLK-----QLVKQSLIES--IT----------LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (992)
Q Consensus 71 ------~~~~~~-----~~i~~~ll~~--l~----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l 127 (992)
++++.+ .+|...|... |. ...++.||+..+.+++.++... ..++++|++...+
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c 325 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALC 325 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHh
Confidence 122211 1122122211 11 1258999999999999999876 5788999999999
Q ss_pred cCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001945 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (992)
Q Consensus 128 ~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 206 (992)
.|. +|..|+.+..+..+|+...+-..-+|+..++..+.+++.| .+..||.-+..+++.+++...+ .....|...+-+
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D-~~~~vRi~tA~alS~lae~~~P-ygie~fd~vl~p 403 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD-RSRFVRIDTANALSYLAELVGP-YGIEQFDEVLCP 403 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc-cceeeeehhHhHHHHHHHhcCC-cchHHHHHHHHH
Confidence 886 7899999999999999999988888999999999999999 8889999999999999887632 234444444333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh---Hh
Q 001945 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YN 282 (992)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~ 282 (992)
+.+..+........+-+++...++... |.+....-......++..+.++ +++.+...+.+...+.+.. |.
T Consensus 404 ----Lw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 404 ----LWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVGTDTPW 477 (975)
T ss_pred ----HHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccCCCCHH
Confidence 333333333333333444443333322 2233333334444444444443 3333333333332222210 11
Q ss_pred Hhhh------------------cCCh----------------HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH
Q 001945 283 SLKK------------------HKLV----------------IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (992)
Q Consensus 283 ~~~~------------------~~~~----------------~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (992)
..+. .+.. +.+...++..+. |+....|+.+....+++..
T Consensus 478 ~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~-------De~ep~r~m~a~~vsri~~ 550 (975)
T COG5181 478 KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYS-------DEPEPYRKMNAGLVSRIFS 550 (975)
T ss_pred HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhcc-------CCcchhhhhhhHHHHHHHH
Confidence 1000 0000 011111111111 2222456667777777777
Q ss_pred Hcch-----hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001945 329 NLAK-----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (992)
Q Consensus 329 ~~~~-----~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (992)
.+|. .....++..+...++.++-.+. ..+-+++.+.-...-..++++..|+..++..|+++.|.||..|+...+
T Consensus 551 ~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 551 RLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 7762 2223333333333333321110 011122222222222335789999999999999999999999999999
Q ss_pred HhHhhhcHHHH-hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHhcCCCHhHHHHHH
Q 001945 404 QFAEYLQPEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCM 481 (992)
Q Consensus 404 ~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~ 481 (992)
.+...++.... ..+..+=..|...+....+.|--..+.++..+..... ..+.|-...+++.|.+.|.+.+.++..+.+
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 99887653221 2344556678889998889999888899888887764 457888999999999999999999999999
Q ss_pred HHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCch
Q 001945 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (992)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (992)
..++.++...++...+ .+.|.....++..-..-...+|..|.+++|.|++++|+. +++..+++.++..+..
T Consensus 710 ~lvg~I~~~~peyi~~--rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~LlnnLkvqeRq 780 (975)
T COG5181 710 ALVGTICMNSPEYIGV--REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHHHHHhcCcccCCH--HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHhcchHHHHH
Confidence 9999999988874432 233333333332211223456778999999999999994 7888888888877777
Q ss_pred hhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecch
Q 001945 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (992)
Q Consensus 562 ~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (992)
.|-...-+++-+++.+|+ | .++|.+++.... ..
T Consensus 781 ~RvctsvaI~iVae~cgp-f-----sVlP~lm~dY~T-----------------------------------------Pe 813 (975)
T COG5181 781 QRVCTSVAISIVAEYCGP-F-----SVLPTLMSDYET-----------------------------------------PE 813 (975)
T ss_pred hhhhhhhhhhhhHhhcCc-h-----hhHHHHHhcccC-----------------------------------------ch
Confidence 787777888888888874 2 478888753321 11
Q ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 001945 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTV 721 (992)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (992)
..++.+.+++++.+.+..|..-..|+..+.+.+...+.+.+..-|..|...+..+.-.+.+. + ..+....++..+
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt----g-~eda~IHLlNll 888 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT----G-DEDAAIHLLNLL 888 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc----c-cHHHHHHHHHHh
Confidence 12567778888888888888888999999999999999888888999999888776554321 1 123334444444
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHH
Q 001945 722 MNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEP 759 (992)
Q Consensus 722 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 759 (992)
.|.++ ++.+.++.++.+++..+...+|.+.+..
T Consensus 889 wpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~g~~m~ 921 (975)
T COG5181 889 WPNIL-----EPSPHVIQSFDEGMESFATVLGSGAMMK 921 (975)
T ss_pred hhhcc-----CCCcHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44432 4578888888899988888888654433
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=4.5e-17 Score=196.27 Aligned_cols=716 Identities=15% Similarity=0.150 Sum_probs=431.9
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccC-C
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN-D 193 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~ 193 (992)
.+.+|.|...+.+++...+..+..++..+..+-. ..+. ....++.+..+|++ .+++.|..|..+|.++..... +
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv--~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D 133 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL--LGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSD 133 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH--HcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchh
Confidence 5578999999998888999999888888875422 1111 13457788888988 789999999999999886542 1
Q ss_pred hh--hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHH
Q 001945 194 GA--EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAI 270 (992)
Q Consensus 194 ~~--~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~ 270 (992)
.. ........+|.++..+...- ..+.-+...++.+|..++......-...+. ..++.++..++++ ++..+..+.
T Consensus 134 ~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa 210 (2102)
T PLN03200 134 HVGSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHH
Confidence 11 01112345677776654321 011123345567788888766554333222 2556666666654 678888888
Q ss_pred HHHHHHHHhhHhH---hhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--------hhchHHHH
Q 001945 271 QIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--------KHVFPPVF 339 (992)
Q Consensus 271 ~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--------~~~~~~~~ 339 (992)
.++..++...+.. +... ..++.+.++|.+.++ ...+..|..+|..++..-. ...+|.++
T Consensus 211 ~aLa~Lass~ee~~~aVIea----GaVP~LV~LL~sg~~------~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI 280 (2102)
T PLN03200 211 SLLARLMMAFESSISKVLDA----GAVKQLLKLLGQGNE------VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHC----CCHHHHHHHHccCCC------hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHH
Confidence 8887777553322 2222 245666666654321 2567888888888876422 23345555
Q ss_pred HHHHhh----hcC-CChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHHH
Q 001945 340 EFASVS----CQN-ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 340 ~~l~~~----l~~-~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
..+... +.+ .+...++.|.++++.++.+. ..+++.+...+.+. +..+...+++++..+...+....
T Consensus 281 ~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~ 352 (2102)
T PLN03200 281 NATVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA 352 (2102)
T ss_pred HHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence 544311 111 12335789999999999885 24566666666543 45556677888888855543211
Q ss_pred --Hhhh--hhHHHHHHHhcccCChH-HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 414 --VSHY--ESVLPCILNALEDESDE-VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 414 --~~~~--~~ll~~l~~~l~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
...+ ..+.+.|.+.+..+++. ++..+..+|..++.+....-.-+-.+..+.|+.++...+.+++..+..++..++
T Consensus 353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC 432 (2102)
T ss_pred hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence 1111 24568888888877654 577888888765443311000012355667888888889999999999999988
Q ss_pred HHhhccCcccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCCh-HHHHHHHHhccCCCCchhhHHH
Q 001945 489 AAAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL-PPFVEAAISGFGLEFSELREYT 566 (992)
Q Consensus 489 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~~ 566 (992)
....+...... ...+|.|.+.+...+ ...+..+..+++.++..-.. .-...+ ...++.+++.+..++..+++.+
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~nde-nr~aIieaGaIP~LV~LL~s~~~~iqeeA 508 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDE-SKWAITAAGGIPPLVQLLETGSQKAKEDS 508 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 54332222111 114677777776532 23455678888887642211 111111 1244555556667788999999
Q ss_pred HHHHHHHHHHcccCccCch--hhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhh
Q 001945 567 HGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (992)
Q Consensus 567 ~~~~~~i~~~~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (992)
..++++++.. .++....+ ...+|.|++.++.. ..+.
T Consensus 509 awAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sg-----------------------------------------d~~~ 546 (2102)
T PLN03200 509 ATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNG-----------------------------------------GPKG 546 (2102)
T ss_pred HHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCC-----------------------------------------CHHH
Confidence 9999999863 22333333 24677777665421 1135
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHH--HHHHH
Q 001945 645 KAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREI--LDTVM 722 (992)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 722 (992)
|..|+++|..++...... .++.+..++...+..++..+..+++.++..... .+..... ....+
T Consensus 547 q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~--------~d~~~~g~~~~ggL 611 (2102)
T PLN03200 547 QEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASL--------EDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch--------hHHHHHhhhccccH
Confidence 788999999886543221 224445556666778888888888888664321 1111110 12356
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHH
Q 001945 723 NIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDA 802 (992)
Q Consensus 723 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (992)
+.|.+.+..+ +.+.+..+..++..++..-......-.....++.++..+.... . .+...
T Consensus 612 ~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~------------------~--~v~ke 670 (2102)
T PLN03200 612 RTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT------------------E--AVATQ 670 (2102)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------------------h--HHHHH
Confidence 6777766554 5677778888887776521110001122344555666665421 1 12334
Q ss_pred HHhHHHHHHHHhCCCh-HHHHH-HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCCh
Q 001945 803 VSDLLPAFAKSMGPHF-APIFA-KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDA 880 (992)
Q Consensus 803 ~~~~l~~l~~~~~~~~-~~~~~-~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 880 (992)
++.+|+.++......- ..+.. ..+|.+++.+++.+. .++..|+.+|+.++........-.-...++.+.+.+++.++
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~-~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI-EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh
Confidence 6666777765322221 22333 478889999987655 68899999999988775332211235778999999999999
Q ss_pred HhHHHHHHHHHHHHhhcCc-c-hhhHHH--HHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHh
Q 001945 881 MNRRNAAFCVGELCKNGGE-S-ALKYYG--DILRGLYPLFGDSEPDDAVRDNAAGAVARMIMV 939 (992)
Q Consensus 881 ~vr~~a~~~l~~l~~~~~~-~-~~~~~~--~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~ 939 (992)
..|++|+++|.+++.+.+. + +..+.. ..+..|..++...+-+....-.+..+++.+.+.
T Consensus 750 ~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999999999998873 2 222222 123345566654333333333467777777774
No 23
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-14 Score=154.83 Aligned_cols=529 Identities=14% Similarity=0.179 Sum_probs=337.5
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 3 QSLELLLIQFLMP-DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 3 ~~l~~ll~~~~s~-d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
..+..++..+.++ +.+....++++|..++..|..|..-.++++.++.+++|.++|+.|...+.++|+..+++..++++.
T Consensus 7 a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~~ 86 (982)
T KOG2022|consen 7 ATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLKL 86 (982)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHHH
Confidence 3567788888776 777888889999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCC-----HHHHH-HHHHHHHHhhhhhh---
Q 001945 82 SLIESITL--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-----EEHRE-VALILFSSLTETIG--- 150 (992)
Q Consensus 82 ~ll~~l~~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~-----~~~~~-~al~~l~~l~~~~~--- 150 (992)
.++..+.- ..+..|-+..|-.++.+.-+..|+ .||.-+..+...++... .+.+. .-+..|..+.....
T Consensus 87 klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d-~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~~ 165 (982)
T KOG2022|consen 87 KLFLILSRFAGGPKLVLNKLCASLASLILYMVPD-LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHVT 165 (982)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccc-cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhcc
Confidence 98887763 235677788888888877777674 99999999998887532 12222 22344433332221
Q ss_pred ----------hcccccHHHHHHHHHHhcCCCC--Ch-----HHHHHHHHHHHHhhcccCChh-h-HHHH-----------
Q 001945 151 ----------QTFRPHFADMQALLLKCLQDET--SN-----RVRIAALKAIGSFLEFTNDGA-E-VVKF----------- 200 (992)
Q Consensus 151 ----------~~~~~~~~~i~~~l~~~l~~~~--~~-----~vr~~a~~~l~~l~~~~~~~~-~-~~~~----------- 200 (992)
..+......+.+++...++... .+ -.+..|++|...++.+..-+. + ...+
T Consensus 166 l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~l~~s~ 245 (982)
T KOG2022|consen 166 LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDVLGQST 245 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhhc
Confidence 0112223334444555554421 22 356778888888776443210 0 0000
Q ss_pred ------------------------------------------HhhHHHHHHHHHHHh------hcCC--HHHHHHHHHHH
Q 001945 201 ------------------------------------------REFIPSILNVSRQCL------ASGE--EDVAVIAFEIF 230 (992)
Q Consensus 201 ------------------------------------------~~~~~~ll~~l~~~l------~~~~--~~~~~~~~~~l 230 (992)
..+++.....+.... .+.+ .+.....+.+.
T Consensus 246 ~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~ 325 (982)
T KOG2022|consen 246 EGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFLAIT 325 (982)
T ss_pred cccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 001111111111110 0111 12222222333
Q ss_pred HHHhcCCccchH---------HHHHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHHHHhhHhHhh----------hcC
Q 001945 231 DELIESPAPLLG---------DSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYNSLK----------KHK 288 (992)
Q Consensus 231 ~~l~~~~~~~~~---------~~l~~li~~~~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~~~~~----------~~~ 288 (992)
...++.+.+.+- ..+..+++.+....+-+. .++.+.-.++.||.++....-.... +.+
T Consensus 326 v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~q 405 (982)
T KOG2022|consen 326 VSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQ 405 (982)
T ss_pred HHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 333333222111 112223333333333332 2445566778888887653221111 112
Q ss_pred ChHHHHHHHhhhhcc--------CCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC-----hhhHH
Q 001945 289 LVIPILQVMCPLLAE--------SNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-----PKYRE 355 (992)
Q Consensus 289 ~~~~il~~l~~~l~~--------~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~-----~~~r~ 355 (992)
...++++.+++.+.- |..++.|.....|+...+.+...-..+|+.++..+...+.+.+.+.+ |..-+
T Consensus 406 Iy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tE 485 (982)
T KOG2022|consen 406 IYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTE 485 (982)
T ss_pred HHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHH
Confidence 233455555555443 33322333335577777888778888888888888888888887766 99999
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChH
Q 001945 356 AAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (992)
Q Consensus 356 ~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 434 (992)
+.++.+..+++.......+.++.++...... ++-.++..-..+...+|.++.++++ ..-++...+|.++++++.+.
T Consensus 486 aci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e-~P~~ln~sl~~L~~~Lh~sk-- 562 (982)
T KOG2022|consen 486 ACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE-HPMYLNPSLPLLFQGLHNSK-- 562 (982)
T ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc-CCcccCchHHHHHHHhcCch--
Confidence 9999999999988776666666666655443 3345888889999999999999854 23467889999999998653
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC--CHhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHh
Q 001945 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMV 511 (992)
Q Consensus 435 v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 511 (992)
.-..+...+..+++.|+..+.||.+.++..+-..+... ....+..++.++|.+..... +...+|...++..+..-++
T Consensus 563 ~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 563 ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 34456667999999999999999999999998888764 36789999999999988765 6666777766655544443
Q ss_pred c-----cChhhhHhHH-HHHHHHHHHHHhh
Q 001945 512 L-----TNDEDLRSRA-RATELLGLVAESV 535 (992)
Q Consensus 512 ~-----~~~~~~~~~~-~~~~~l~~l~~~~ 535 (992)
. .++.+...|. .-+.+++.+..+.
T Consensus 643 ~~l~~~i~~~e~~l~~~~~l~~iS~LftSL 672 (982)
T KOG2022|consen 643 INLAPGIDDQENHLRIAFQLNTISALFTSL 672 (982)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 2 1233334332 2346666666554
No 24
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.85 E-value=2.9e-15 Score=153.98 Aligned_cols=478 Identities=19% Similarity=0.258 Sum_probs=314.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~l 83 (992)
-+.++++....+|+..+++|++.|.+++..|+.|...-.++.++..|+.+..|..+|.+.+...|+-+|.+.+..||+..
T Consensus 15 llDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyv 94 (1053)
T COG5101 15 LLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYV 94 (1053)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-cCCH-------hHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-----
Q 001945 84 IESITL-EHSA-------PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG----- 150 (992)
Q Consensus 84 l~~l~~-~~~~-------~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~----- 150 (992)
.+.... .++. .+.+.+-.++-.|++.++|+ .||+++|.+.+..+ .+.++.+..+.+|.-+.+..-
T Consensus 95 v~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~-nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSae 172 (1053)
T COG5101 95 VQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR-NWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAE 172 (1053)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc-ccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHH
Confidence 887763 2333 44455666777899999995 99999999998766 456778888888877765532
Q ss_pred -----------hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCC
Q 001945 151 -----------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGE 219 (992)
Q Consensus 151 -----------~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 219 (992)
.++...+++|+.++.+.|..+.++..-.+.+..+..++.|.+-.. .|. ..+++.+...+. ..
T Consensus 173 qmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~y---Ife---TnIieLv~~~f~-s~ 245 (1053)
T COG5101 173 QMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDY---IFE---TNIIELVLEHFN-SM 245 (1053)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhH---HHH---HHHHHHHHHHhc-cC
Confidence 233446788999999999876888899999999999999885221 111 223332222221 23
Q ss_pred HHHHHHHHHHHHHHhcCC--cc-------ch---------------------------------HHHHHHHHHHHH----
Q 001945 220 EDVAVIAFEIFDELIESP--AP-------LL---------------------------------GDSVKSIVHFSL---- 253 (992)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~--~~-------~~---------------------------------~~~l~~li~~~~---- 253 (992)
++.|..++.||.+++... |. .+ ...+..+..++.
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 456667777777765431 00 00 011112222211
Q ss_pred ---HHhhCCC-----------------C-ChHHHHHHHHHHHHHHHhhHhH-----------------------------
Q 001945 254 ---EVSSSHN-----------------L-EPNTRHQAIQIISWLAKYKYNS----------------------------- 283 (992)
Q Consensus 254 ---~~~~~~~-----------------~-~~~~r~~a~~~l~~l~~~~~~~----------------------------- 283 (992)
...++++ + +.++-..+++.|..++..-...
T Consensus 326 ~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~ 405 (1053)
T COG5101 326 VYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQD 405 (1053)
T ss_pred HHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchh
Confidence 1111111 0 1223345677776554311000
Q ss_pred ----hhhcCChHHHHHHH----hhhhccCCC-----CC----------CCCCCchHHHHHHHHHHHHHHcchhchHHHHH
Q 001945 284 ----LKKHKLVIPILQVM----CPLLAESNE-----AG----------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFE 340 (992)
Q Consensus 284 ----~~~~~~~~~il~~l----~~~l~~~~~-----~~----------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 340 (992)
++++ .+..++..+ +.-|...++ +| |.|-...++.-.+++-.++.-.-.+.-.-++.
T Consensus 406 ~~~pLrkh-iY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~ 484 (1053)
T COG5101 406 STKPLRKH-IYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIG 484 (1053)
T ss_pred cccchHHH-HHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHH
Confidence 0111 122233322 222333221 11 11223445556666666665444333334455
Q ss_pred HHHhhhcC--CChhhHHHHHHHHHHHhhcCHHHHHHh-HHHHHHHHHh-----hcCCCChhHHHHHHHHHHHhHhhhcHH
Q 001945 341 FASVSCQN--ASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG-----ALRDPEQFVRGAASFALGQFAEYLQPE 412 (992)
Q Consensus 341 ~l~~~l~~--~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~~~~ 412 (992)
.+-..+.+ -+|..-...+||+|.++..+.+..... +-.++..++. .-+|....|.....+.+|++-+++..
T Consensus 485 Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka- 563 (1053)
T COG5101 485 KLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA- 563 (1053)
T ss_pred HHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH-
Confidence 55444444 367888899999999998876554432 3344444333 34567777777788889999888743
Q ss_pred HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc--------ccccchHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 001945 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE--------EILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--------~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l 484 (992)
...++..++..++..++.....|+..||..+-.+++.|+. +-.|+...++..+-+...+-.+.-+....++.
T Consensus 564 hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAc 643 (1053)
T COG5101 564 HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEAC 643 (1053)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHH
Confidence 4567888999999999998899999999999999999863 23577777777776665554555555556666
Q ss_pred HHHHHHhh
Q 001945 485 GSVAAAAE 492 (992)
Q Consensus 485 ~~l~~~~~ 492 (992)
|.+++..+
T Consensus 644 g~vIse~p 651 (1053)
T COG5101 644 GMVISEVP 651 (1053)
T ss_pred hHHHhccc
Confidence 66655443
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.8e-16 Score=179.16 Aligned_cols=637 Identities=15% Similarity=0.182 Sum_probs=387.6
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
..+...+...+.+ +++..|.+++--|.+++.++....+ .....+.+..+..+.+.++++=....+.+-+.-+.+..
T Consensus 817 ~~~~~~l~~~~~s-~nph~R~A~~VWLLs~vq~l~~~~~---v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg 892 (1702)
T KOG0915|consen 817 TIILKLLDTLLTS-PNPHERQAGCVWLLSLVQYLGQQPE---VVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG 892 (1702)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCch---hhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC
Confidence 3466777788888 9999999999988888888864322 23344666677777776665433222222222111111
Q ss_pred c-cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhh--hhccCCCCCCCCCCc
Q 001945 238 A-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP--LLAESNEAGEDDDLA 314 (992)
Q Consensus 238 ~-~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~--~l~~~~~~~~d~~~~ 314 (992)
. ..-+..+..++ .++...+.+.. + ..+. ..+++ .|.+.. +....+
T Consensus 893 d~~~k~~LV~sL~------------------------~tl~~Gkr~~~-~--vs~e--TelFq~G~Lg~Tp---~Gg~is 940 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLV------------------------NTLTGGKRKAI-K--VSEE--TELFQEGTLGKTP---DGGKIS 940 (1702)
T ss_pred CchhHHHHHHHHH------------------------HHHhccccccc-e--eccc--hhcccCCcCCCCC---CCCcch
Confidence 0 00011112222 22222111100 0 0000 00000 011000 011112
Q ss_pred hHHHHHHHHHHHHHHcchhchHHH-HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChh
Q 001945 315 PDRAAAEVIDTMALNLAKHVFPPV-FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (992)
...-+..++..+++ |.+ ..++.-.-.+..|..|.+|.+.++.+++...+.+.++++.++|.+.+.=-||++.
T Consensus 941 ----TYKELc~LASdl~q---PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~ 1013 (1702)
T KOG0915|consen 941 ----TYKELCNLASDLGQ---PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKK 1013 (1702)
T ss_pred ----HHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHH
Confidence 22334456777773 222 2333323456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHhcCC
Q 001945 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENS 472 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~ 472 (992)
||.+-...-+.+...-+..+.+|+..++..|+..+.+..++||+++|.|+..+++.-+. .+...++.++..+++.+++-
T Consensus 1014 Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1014 VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988899988877778889999999999999999999999999999999988653 46678889999999999888
Q ss_pred CHhHHHHH---HHHHHHHHHHhhcc-----CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCCh
Q 001945 473 PRNLQETC---MSAIGSVAAAAEQA-----FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (992)
Q Consensus 473 ~~~v~~~a---~~~l~~l~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (992)
...+|+.+ ..+++.++-...+. -..+.+.++|.+..-=-. ++-..+|..++.++..++..-|+ .+.||+
T Consensus 1094 KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim--s~v~evr~~si~tl~dl~Kssg~-~lkP~~ 1170 (1702)
T KOG0915|consen 1094 KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM--SKVNEVRRFSIGTLMDLAKSSGK-ELKPHF 1170 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc--cchHHHHHHHHHHHHHHHHhchh-hhcchh
Confidence 78888765 55566665554432 223455566655431111 22335677899999999988877 799999
Q ss_pred HHHHHHHHhccCCCCchhhHHH-HHHHHHHHHHc---c---cCccCc---------------hhhhhHHHHhhccCCCCC
Q 001945 545 PPFVEAAISGFGLEFSELREYT-HGFFSNIAGVL---E---DGFAQY---------------LPLVVPLAFSSCNLDDGS 602 (992)
Q Consensus 545 ~~i~~~l~~~l~~~~~~~r~~~-~~~~~~i~~~~---~---~~~~~~---------------l~~i~~~l~~~~~~~~~~ 602 (992)
+.+++.+++....-.+.+-.+. .++.+.=.+.+ . ..-.|. +..++|.+.+....
T Consensus 1171 ~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~---- 1246 (1702)
T KOG0915|consen 1171 PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG---- 1246 (1702)
T ss_pred hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----
Confidence 9999999987765444433221 11111000000 0 001111 12222222222110
Q ss_pred ccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCC
Q 001945 603 AVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFH 682 (992)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (992)
. + .+..|.++...+..++..++..+.||..++++.++..+.+.+
T Consensus 1247 -------------------------------s--V---gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN 1290 (1702)
T KOG0915|consen 1247 -------------------------------S--V---GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN 1290 (1702)
T ss_pred -------------------------------c--C---CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc
Confidence 0 1 113577888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 001945 683 EDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS 762 (992)
Q Consensus 683 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 762 (992)
+.+|++-+.+++.+++.. .++..++++..++..++. ++++.. ...+..+.. +....+..+..+.+
T Consensus 1291 esv~kafAsAmG~L~k~S---------s~dq~qKLie~~l~~~l~---k~es~~--siscatis~-Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1291 ESVRKAFASAMGYLAKFS---------SPDQMQKLIETLLADLLG---KDESLK--SISCATISN-IANYSQEMLKNYAS 1355 (1702)
T ss_pred HHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHhc---cCCCcc--chhHHHHHH-HHHhhHHHHHhhHH
Confidence 999999999999998853 344555666555554432 222222 233344444 33344455567777
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHH-HHHHHHHHHHHhhcCCCCccc
Q 001945 763 RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAP-IFAKLFDPLMKFAKSSRPLQD 841 (992)
Q Consensus 763 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~ 841 (992)
.++|.++-..... .++...+..-+ ...+.. .|....+ |...++..++.....+.++..
T Consensus 1356 aILPLiFLa~~ee-----------------~Ka~q~Lw~dv---W~e~vs-ggagtvrl~~~eiLn~iceni~nn~~w~l 1414 (1702)
T KOG0915|consen 1356 AILPLIFLAMHEE-----------------EKANQELWNDV---WAELVS-GGAGTVRLYLLEILNLICENITNNESWKL 1414 (1702)
T ss_pred HHHHHHHHHHhHH-----------------HHHHHHHHHHH---HHHhCC-CCcchhhhhHHHHHHHHHHHhccchHHHH
Confidence 8877665332211 01111222111 111110 1222233 555666666555555566777
Q ss_pred hhhHHHHHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhh
Q 001945 842 RTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLF 916 (992)
Q Consensus 842 r~~al~~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 916 (992)
|..+...+...+...... ..|..-.+.+.++..+.....+-++.-..++...+..+...+..-.+.+.++..+..
T Consensus 1415 r~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~ 1490 (1702)
T KOG0915|consen 1415 RKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEV 1490 (1702)
T ss_pred HHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHH
Confidence 777766666655544332 336777888888888888777777776777776666555544444445555544444
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.7e-14 Score=160.79 Aligned_cols=657 Identities=15% Similarity=0.199 Sum_probs=395.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc--ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
+...+...+.+++++.|.++.-.+-.++.+++.+ ...+.++|...+..+|.+ .+.-++..|.+-++-..+..+.+.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVYelgd~~~- 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVYELGDSSL- 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEEecCCchh-
Confidence 4556667788999999999998888888888743 455678899999999999 888899999988877666553321
Q ss_pred HHHHHhhHHHHHHHHHHHhhc-----CCHHHH-------------HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhC
Q 001945 197 VVKFREFIPSILNVSRQCLAS-----GEEDVA-------------VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS 258 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~-----~~~~~~-------------~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~ 258 (992)
-.+++..+++.+...-.. ++.++. .....-|..++.... -|+++--+++++.+
T Consensus 897 ---k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~------qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 897 ---KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG------QPDLVYKFMQLANH 967 (1702)
T ss_pred ---HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC------ChHHHHHHHHHhhh
Confidence 244556666655432110 111111 111112222222111 12344444445544
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---hhch
Q 001945 259 HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF 335 (992)
Q Consensus 259 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~ 335 (992)
.. ...-|.-|---+..+++....... +|++.++|-++.+=-+.+. .++.+-....+.+..... +..+
T Consensus 968 ~A-~wnSk~GaAfGf~~i~~~a~~kl~--p~l~kLIPrLyRY~yDP~~-------~Vq~aM~sIW~~Li~D~k~~vd~y~ 1037 (1702)
T KOG0915|consen 968 NA-TWNSKKGAAFGFGAIAKQAGEKLE--PYLKKLIPRLYRYQYDPDK-------KVQDAMTSIWNALITDSKKVVDEYL 1037 (1702)
T ss_pred hc-hhhcccchhhchHHHHHHHHHhhh--hHHHHhhHHHhhhccCCcH-------HHHHHHHHHHHHhccChHHHHHHHH
Confidence 32 333344433344556554433322 3666676666655433332 455555555555554322 4455
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh---hhc-
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE---YLQ- 410 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~- 410 (992)
..++.-+...+.+..|++|+++|.|+..+..+-+ +.+.++++.++..+++.++|-+..||.+|-.+...+++ ...
T Consensus 1038 neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1038 NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6677777777899999999999999999999864 67788899999999999999999999987555444443 321
Q ss_pred ----HHHHhhhhhHHHHHHH-hcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 001945 411 ----PEIVSHYESVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (992)
Q Consensus 411 ----~~~~~~~~~ll~~l~~-~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 485 (992)
..-.+.+..++|.++. ++.+..+.||..+...+..+++..+..+.||++.+++.|++.+..-.+.+-..
T Consensus 1118 ~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY------ 1191 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY------ 1191 (1702)
T ss_pred cCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH------
Confidence 1234567788888874 44466789999999999999999999999999999999999987655543211
Q ss_pred HHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHH
Q 001945 486 SVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (992)
Q Consensus 486 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (992)
++... ..--.+.+..++.-... +. ..++++..+...+........++.+.+.+-.+.+- ..|-.
T Consensus 1192 -ls~r~----~~~e~ealDt~R~s~ak-ss-------pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl---~Tkvg 1255 (1702)
T KOG0915|consen 1192 -LSLRL----INIETEALDTLRASAAK-SS-------PMMETINKCINYIDISVLEELIPRLTELVRGSVGL---GTKVG 1255 (1702)
T ss_pred -HHHhh----hhhHHHHHHHHHHhhhc-CC-------cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC---Ccchh
Confidence 11111 00001111111111111 11 13344444444444444444455555555444442 34667
Q ss_pred HHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhH
Q 001945 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (992)
Q Consensus 566 ~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 645 (992)
+..++..++..+|.++.||-...+..++..+.. ++. .+|
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d---------------------------------------RNe--sv~ 1294 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKD---------------------------------------RNE--SVR 1294 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhcccc---------------------------------------ccH--HHH
Confidence 788899999999999999999999999865431 011 145
Q ss_pred HHHHHHHHHHHHHhc-ccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 001945 646 AAATQALGLFALHTK-SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNI 724 (992)
Q Consensus 646 ~~a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (992)
+.-..+.|.+++... +.+..+++.++..+..- .++.+..++.++..+.... ++.++++.+.++|.
T Consensus 1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k----~es~~siscatis~Ian~s----------~e~Lkn~asaILPL 1360 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGK----DESLKSISCATISNIANYS----------QEMLKNYASAILPL 1360 (1702)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc----CCCccchhHHHHHHHHHhh----------HHHHHhhHHHHHHH
Confidence 555556666665543 35555666555444432 2333455555555544432 35677888889988
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHh---CCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHH
Q 001945 725 FIRTMTEDDDKDVVAQACTSIVEIINDY---GYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMD 801 (992)
Q Consensus 725 l~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (992)
..-...++ +.+.. +...++...+ |.+...-+..+++..+..... +++.|.+..
T Consensus 1361 iFLa~~ee-~Ka~q----~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~-------------------nn~~w~lr~ 1416 (1702)
T KOG0915|consen 1361 IFLAMHEE-EKANQ----ELWNDVWAELVSGGAGTVRLYLLEILNLICENIT-------------------NNESWKLRK 1416 (1702)
T ss_pred HHHHHhHH-HHHHH----HHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhc-------------------cchHHHHHH
Confidence 76554433 23322 2223333332 222222244444443332221 345677777
Q ss_pred HHHhHHHHHHHHhCCChH-HHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCCh
Q 001945 802 AVSDLLPAFAKSMGPHFA-PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDA 880 (992)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 880 (992)
.++..+..++........ |++..+.+.+...++. ..+..+...+..+...++.++.....-++.+....++......+
T Consensus 1417 q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~G-RiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~~ 1495 (1702)
T KOG0915|consen 1417 QAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNG-RIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRREA 1495 (1702)
T ss_pred HHHHHHHHHcccccccCChHHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHHh
Confidence 888888887777666554 7888888888887764 34566777777777777666555444445555555555444444
Q ss_pred HhHHHHHHHHHHHHhhcC
Q 001945 881 MNRRNAAFCVGELCKNGG 898 (992)
Q Consensus 881 ~vr~~a~~~l~~l~~~~~ 898 (992)
.-+..+.-+.|......+
T Consensus 1496 ~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1496 KYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHhhhHHHHhhhh
Confidence 444445555555544433
No 27
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.77 E-value=1.2e-12 Score=141.94 Aligned_cols=574 Identities=14% Similarity=0.149 Sum_probs=308.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccC-----CCHHHHHHHH
Q 001945 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQLVK 80 (992)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~-----~~~~~~~~i~ 80 (992)
..++..+|+|+..++.||+.|++++.+++|...|..+..+. .+-+.|..|++.+|+.+.++|.. +.++....||
T Consensus 8 ~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR 87 (947)
T COG5657 8 KQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIR 87 (947)
T ss_pred HHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHH
Confidence 35677799999999999999999999999999999998875 57899999999999999999975 4555666999
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc------cc
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FR 154 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~------~~ 154 (992)
..++.++.+ .+....-+.+.+++.||..++| ..||.++|.+...+++.+.....+.+..+..+.+...+. +.
T Consensus 88 ~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ 165 (947)
T COG5657 88 DELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFL 165 (947)
T ss_pred HHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 999999995 6777777999999999999999 499999999999999988888888888888888776533 33
Q ss_pred ccHHHHHHHHHHhcCCC-CChHHHH-----------HHHHHHHHhhcc-cCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 001945 155 PHFADMQALLLKCLQDE-TSNRVRI-----------AALKAIGSFLEF-TNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (992)
Q Consensus 155 ~~~~~i~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~-~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (992)
+..+.+.+++...+... +.+..+. .+++.+..+... ..+. ..-+.+.++..+....+.+....+.
T Consensus 166 ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi--~eFfEd~l~~~m~~F~klls~~~~~ 243 (947)
T COG5657 166 EIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDI--PEFFEDNLDKFMEHFCKLLSYSNPV 243 (947)
T ss_pred HHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHHhhcchh
Confidence 33444444444433221 1122111 122333222222 1121 1334556666666665555433222
Q ss_pred HHH-------------HHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHHhh-HhH-
Q 001945 222 VAV-------------IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS---HNLEPNTRHQAIQIISWLAKYK-YNS- 283 (992)
Q Consensus 222 ~~~-------------~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~---~~~~~~~r~~a~~~l~~l~~~~-~~~- 283 (992)
.+. +.+..+.-+....+..+.+.+-.+++.......+ +..-+-+...++.++....++. ++.
T Consensus 244 lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~~ 323 (947)
T COG5657 244 LQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKTA 323 (947)
T ss_pred hhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHHH
Confidence 222 2344455555556666665555555555444322 1112223333344443333310 110
Q ss_pred --hhh--cCChHHHHHHHhhhh-ccCCCCC----------------CCCCCchHHHHHHHHHHHHHHcchhchHHHHHHH
Q 001945 284 --LKK--HKLVIPILQVMCPLL-AESNEAG----------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA 342 (992)
Q Consensus 284 --~~~--~~~~~~il~~l~~~l-~~~~~~~----------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 342 (992)
+.+ ...+..+++.++-.. .-.++|. .|-+...|.++.+.+..+-...++-+.+.+...+
T Consensus 324 e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~i 403 (947)
T COG5657 324 EVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVI 403 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 111 112333333333221 1111110 1122345666677776666666655556666677
Q ss_pred HhhhcCCC---hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC----CChhHHHHHH-HHHHHhHhhhcHHH-
Q 001945 343 SVSCQNAS---PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD----PEQFVRGAAS-FALGQFAEYLQPEI- 413 (992)
Q Consensus 343 ~~~l~~~~---~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~-~~l~~l~~~~~~~~- 413 (992)
.+....++ -..+..++.++..++...-..+-+..+..-..+...+.+ .+.+++.... ..+.........++
T Consensus 404 e~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~ 483 (947)
T COG5657 404 ESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELS 483 (947)
T ss_pred HHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhhhhhhh
Confidence 66666552 223333333333322211112222222222222222222 3444433322 22221111111111
Q ss_pred -HhhhhhHHHHHHHhcccCC-----hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC-CHhHHHHHHHHHHH
Q 001945 414 -VSHYESVLPCILNALEDES-----DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGS 486 (992)
Q Consensus 414 -~~~~~~ll~~l~~~l~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~ 486 (992)
...+ -.+.+...+.+.. -.+|.+....+....-. +.....-.++++-.+...+... ...-+...++++++
T Consensus 484 ~~~fl--~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~r 560 (947)
T COG5657 484 ESKFL--ASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISR 560 (947)
T ss_pred hHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 1111 1111222222221 12333333333322111 1133455666666666666554 35678889999999
Q ss_pred HHHHhhccCcccHHHHHHHHHHHHhcc-Chhhh-HhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhh-
Q 001945 487 VAAAAEQAFIPYAERVLELLKIFMVLT-NDEDL-RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR- 563 (992)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r- 563 (992)
+....++.+.|...++++.+.++.... +++.. .+-...++.++.++... ....+..++.+...+...++.+.
T Consensus 561 ii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~~-----~~~~~~~ip~l~~~l~p~~~~l~~ 635 (947)
T COG5657 561 IIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFLK-----SGMCEITIPTLVLALVPEFPVLLS 635 (947)
T ss_pred HHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHhh-----hcccccchHHHHHhhCccchhhhh
Confidence 999999999998889999888877532 22222 22334555555554322 22233344444444443323332
Q ss_pred HHHHHHHHHHHHHcc---cCccCc-hhhhhHHH
Q 001945 564 EYTHGFFSNIAGVLE---DGFAQY-LPLVVPLA 592 (992)
Q Consensus 564 ~~~~~~~~~i~~~~~---~~~~~~-l~~i~~~l 592 (992)
+.+...|+.+-.... +.|..+ +|.++..+
T Consensus 636 ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l 668 (947)
T COG5657 636 EDATELWSYVLQLLSILPEHFSGDVLPSVVKIL 668 (947)
T ss_pred hhHHHHHHHHHHHHhhcchhhcCCcCchHHHHH
Confidence 555666665544433 344433 44444333
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7.2e-15 Score=153.78 Aligned_cols=482 Identities=16% Similarity=0.162 Sum_probs=306.4
Q ss_pred cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhc
Q 001945 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (992)
Q Consensus 90 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 168 (992)
|....+|.....+...+...... ++-..+.|..-+.+++. +...|.+.....+.+..+. ....+....++..+.+.+
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~-~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHL-QIVDPRPISIIEILLEEL 105 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhc-cccCcchhHHHHHHHHhc
Confidence 45667776666655544432211 13345666666666553 3455666555555554333 233455567788888888
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHH
Q 001945 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSI 248 (992)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 248 (992)
.. +++.++.+...|+..+........ . ..++..+.+.+....-..+..+...+..++....-. ...=..+
T Consensus 106 ~t-ps~~~q~~~~~~l~~~~~~~~~~~-~-------~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~-~~~~~~~ 175 (569)
T KOG1242|consen 106 DT-PSKSVQRAVSTCLPPLVVLSKGLS-G-------EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE-SLKEFGF 175 (569)
T ss_pred CC-CcHHHHHHHHHHhhhHHHHhhccC-H-------HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh-hhhhhhH
Confidence 88 999999999999987765543211 1 122333333444444445555555555555432210 0000123
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH
Q 001945 249 VHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (992)
Q Consensus 249 i~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~ 328 (992)
+..+.....+.. ....|+.+.-........-+.. ..+|+.++++.++....+... .+|.++..+...+..
T Consensus 176 l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~--~EPyiv~~lp~il~~~~d~~~-------~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 176 LDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPP--FEPYIVPILPSILTNFGDKIN-------KVREAAVEAAKAIMR 245 (569)
T ss_pred HHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCC--CCchHHhhHHHHHHHhhccch-------hhhHHHHHHHHHHHH
Confidence 344444444432 2233332222222222221211 225777888888777655543 789999999999988
Q ss_pred HcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001945 329 NLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (992)
Q Consensus 329 ~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (992)
.++...+..+++-+...+....|+.+.+++..+|.+++..+..+...++.++|.+...|.|.++.||.++..++.+++..
T Consensus 246 ~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 246 CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 88855555555544444445599999999999999999999999999999999999999999999999999999999987
Q ss_pred hcHH-HH-----------------------------------hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh--
Q 001945 409 LQPE-IV-----------------------------------SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-- 450 (992)
Q Consensus 409 ~~~~-~~-----------------------------------~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-- 450 (992)
..+. ++ +.+.-++|.+-+.+.+.+...+..++..+.+++...
T Consensus 326 idN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 326 IDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred hccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 6431 11 112223444444444444445566777777888777
Q ss_pred ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHH
Q 001945 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGL 530 (992)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 530 (992)
+..+.||++.+++.+-..+.+..+++|..+..+++.+.+..++.-. +...|.+...+.... ...-|.-+...++.
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k--~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEK--SLVDRSGAAQDLSE 480 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccch--hhhhhHHHhhhHHH
Confidence 4568899999999999999999999999999999999998885432 445566655554321 11112234445555
Q ss_pred HHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCC
Q 001945 531 VAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600 (992)
Q Consensus 531 l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~ 600 (992)
+....|-+.+..+++.++..... ...++.+++.....+.-+-...+..+.+|+..+++.+.+.+...+
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~--~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~d 548 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASS--VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADND 548 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhh--ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcC
Confidence 55455544444444444433222 233567888888888888888899999999999999999876443
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=4e-14 Score=148.26 Aligned_cols=524 Identities=18% Similarity=0.163 Sum_probs=338.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHH
Q 001945 218 GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (992)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (992)
+..+++..-++........++. ..+.++.+..-+..++.. .+..|.....+...++.+... ..+-...++..+
T Consensus 29 ~~~~v~~~ml~a~~~~~~~~~~---~~v~~l~~~~~~~l~~~~-~~~~~~~~~v~~~~~a~~~~~---~d~~~~~~~~~~ 101 (569)
T KOG1242|consen 29 RRIDVRGNMLEAGEAAINQHGD---QNVLNLKPCFEQRLNSLH-NDNLRNNVVVLEGTLAFHLQI---VDPRPISIIEIL 101 (569)
T ss_pred cchhhHHhHHHHHHHHHHhhhH---HHHHHHHHHHHHHhccch-hHHHhhhhHHHHHHHHHhccc---cCcchhHHHHHH
Confidence 3344555444444444433332 233344444433333332 556666665555555543221 112333455666
Q ss_pred hhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHH-HHHHhH
Q 001945 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMKEKL 376 (992)
Q Consensus 298 ~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~~~~l 376 (992)
+..+..... +.+++...|+..+.-.........+.+.+.+.++..+...|..+...+..+..+..- .+.+
T Consensus 102 ~~~~~tps~-------~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-- 172 (569)
T KOG1242|consen 102 LEELDTPSK-------SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-- 172 (569)
T ss_pred HHhcCCCcH-------HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--
Confidence 655554433 567777788877666555444556677777778888899999999999998887542 2222
Q ss_pred HHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc-cc
Q 001945 377 ESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EI 454 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~ 454 (992)
..++..+.....|.+. ..|..+..+....+..+++.+.+|+..++|.++..+.|..+.||.++..+...+...++. .+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 2567778888888654 445568888888888888888889999999999999999999999999999999887753 34
Q ss_pred ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHh
Q 001945 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (992)
Q Consensus 455 ~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 534 (992)
..+++.++..+. +..+.-+..+++.+|.++...+..+.-+++.++|.+.+.+.++ ...+|..+++|+..++..
T Consensus 253 K~llpsll~~l~----~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT---~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 253 KLLLPSLLGSLL----EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT---KPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hHhhhhhHHHHH----HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC---CHHHHHHHHHHHHHHHHh
Confidence 444444444443 3367888999999999999999999999999999999999654 335677899999988876
Q ss_pred hchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhc
Q 001945 535 VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENI 614 (992)
Q Consensus 535 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 614 (992)
+.. +.+..+++.+++++.++.....++. ..++.-.- ...--.|-+.-++|.+-..++.
T Consensus 326 idN----~dI~~~ip~Lld~l~dp~~~~~e~~-~~L~~ttF-V~~V~~psLalmvpiL~R~l~e---------------- 383 (569)
T KOG1242|consen 326 IDN----PDIQKIIPTLLDALADPSCYTPECL-DSLGATTF-VAEVDAPSLALMVPILKRGLAE---------------- 383 (569)
T ss_pred hcc----HHHHHHHHHHHHHhcCcccchHHHH-Hhhcceee-eeeecchhHHHHHHHHHHHHhh----------------
Confidence 654 3466777778888887654443322 22211100 0011124455556666544321
Q ss_pred ccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh--cccccchHHHHHHHHHhcccCCChhHHHHHHHH
Q 001945 615 NGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT--KSSYAPFLEESLKILVRHASYFHEDVRYQAVFA 692 (992)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~ 692 (992)
++. +.|+.++..++.++.-. +..+.||++.+++.+-..+.+..+++|..+..+
T Consensus 384 -----------------------Rst--~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 384 -----------------------RST--SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred -----------------------ccc--hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHH
Confidence 001 23566777888887776 567899999999999988888899999999999
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Q 001945 693 LKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLL 772 (992)
Q Consensus 693 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l 772 (992)
|+.+++..+.. .++...|.+.+....+...--+......+.+++..+| .+.+..+++.+....
T Consensus 439 L~~l~e~~g~~-------------~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~----v~~~~~~~~~~~a~~ 501 (569)
T KOG1242|consen 439 LGALLERLGEV-------------SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG----VEKVEDILPEILANA 501 (569)
T ss_pred HHHHHHHHHhh-------------cccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc----chHHHHHHHHHHHHH
Confidence 99998876532 1244556665555433222223345567777777666 344445555444333
Q ss_pred hhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHH
Q 001945 773 REESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVA 847 (992)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~ 847 (992)
.... .++.+.+....++..+-...+..+.+|+..+++.+.+.+.+.+. ..+..++.
T Consensus 502 ~~~~------------------~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de-~~~~~~~~ 557 (569)
T KOG1242|consen 502 SSVL------------------IDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDE-KGRDTALE 557 (569)
T ss_pred hhcc------------------chhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCC-ccccchhh
Confidence 2211 22233334445555556666778899999999999998876554 45555543
No 30
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.8e-09 Score=117.52 Aligned_cols=779 Identities=15% Similarity=0.135 Sum_probs=393.7
Q ss_pred HHHHHHhc--CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcC-CHhHHHHHHHHHHHHHcccCCCCC
Q 001945 39 ALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH-SAPVRRASANVVSIIAKYAVPAGE 115 (992)
Q Consensus 39 ~l~~il~~--~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~-~~~vr~~~~~~l~~i~~~~~~~~~ 115 (992)
.+.+++.. .+++..|..|-..|+.. .+ .......+++.+.++. +-.||..++-=+.....+.++...
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~-----~K-----~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQL-----EK-----QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh-----hc-----CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 45555543 45789999999888765 11 1233345667666544 567787777777665544343221
Q ss_pred Ccc------------hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 001945 116 WPD------------LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKA 183 (992)
Q Consensus 116 ~~~------------ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~ 183 (992)
-|. +-..|+..+-.....+|..--.++..|+..-. -.+++.+++.+...|++ ++...-..|+-|
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~---p~~Wp~l~d~i~~~Lqs-~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADY---PEQWPGLLDKIKNLLQS-QDANHVYGALLC 150 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC---cccchhHHHHHHHHhcC-cchhhHHHHHHH
Confidence 111 23333443333344555555566656554322 36789999999999999 888888889999
Q ss_pred HHHhhcccC---Ch---hhHHHHHhhHHHHHHHHHHHhhcCCHH---HHHHHHHHHHHHhcCC-ccch--HHHHHHHHHH
Q 001945 184 IGSFLEFTN---DG---AEVVKFREFIPSILNVSRQCLASGEED---VAVIAFEIFDELIESP-APLL--GDSVKSIVHF 251 (992)
Q Consensus 184 l~~l~~~~~---~~---~~~~~~~~~~~~ll~~l~~~l~~~~~~---~~~~~~~~l~~l~~~~-~~~~--~~~l~~li~~ 251 (992)
+..+++..+ +. .-...+..++|.+++.....+..++.. .....++++..++.+. |..+ ...+...+++
T Consensus 151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l 230 (1010)
T KOG1991|consen 151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMEL 230 (1010)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHH
Confidence 988875543 11 123335677899998888887766543 3345555555554432 1111 1223333444
Q ss_pred HHHHhhCC------CCChHHHH---------HHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchH
Q 001945 252 SLEVSSSH------NLEPNTRH---------QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (992)
Q Consensus 252 ~~~~~~~~------~~~~~~r~---------~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~ 316 (992)
+..+++.+ ..+++.|. =|+..+..+.+..++..... . ...
T Consensus 231 ~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~------------------~-------~y~ 285 (1010)
T KOG1991|consen 231 FLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV------------------P-------EYK 285 (1010)
T ss_pred HHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc------------------h-------hhH
Confidence 44444332 12333332 12222222222111100000 0 000
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc-----CHHHHHHhHHHHHH-HHHhhcC--
Q 001945 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG-----CAEWMKEKLESVLH-IVLGALR-- 388 (992)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~-----~~~~~~~~l~~i~~-~l~~~l~-- 388 (992)
..+...+ ..+...++..++..+.++-+ .-|..-..-..++..+... .-+.+.||+..++. .+++++.
T Consensus 286 ~Fa~~f~----~n~~~~ile~~lk~l~~~~~-~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~ 360 (1010)
T KOG1991|consen 286 EFAQMFL----KNFAQGILEVFLKILEQWRQ-QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFN 360 (1010)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCC
Confidence 0011111 01111112222222222212 2232222222222222222 12445667666553 5555543
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHH
Q 001945 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLA 467 (992)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~ 467 (992)
|.+... +..+-.+|+..-+ ....|- .+-+.+|..++..++.+-+ +.+.+.+.-+++.+..
T Consensus 361 d~deel--------------we~DP~EYiR~~~----Di~ed~-~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~ 421 (1010)
T KOG1991|consen 361 DEDEEL--------------WEEDPYEYIRKKF----DIFEDG-YSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTR 421 (1010)
T ss_pred cccHHH--------------HhcCHHHHHHhcC----chhccc-CCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh
Confidence 322110 0000011211111 111111 1112456666666666553 3333433333333332
Q ss_pred Hhc----CCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH-hccChhhhHhHHHHHHHHHHHHHhhchhhcc-
Q 001945 468 ALE----NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM-VLTNDEDLRSRARATELLGLVAESVGRARME- 541 (992)
Q Consensus 468 ~l~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 541 (992)
.-. ..+..-+..|+.++|++++...+. .||-+++-..+.+.+ ..-.++.--+|++|+..++.++. ..|.
T Consensus 422 ~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~----~df~d 496 (1010)
T KOG1991|consen 422 YKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSS----IDFKD 496 (1010)
T ss_pred hcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHh----ccCCC
Confidence 211 234667889999999999765432 234443322222222 12234455678899999998872 2232
Q ss_pred -CChHHHHHHHHhccC-CCCchhhHHHHHHHHHHHHHcc---cCccCchhhhhHHHHhhccCCCCCccCCCCCcchhccc
Q 001945 542 -PILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLE---DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENING 616 (992)
Q Consensus 542 -~~~~~i~~~l~~~l~-~~~~~~r~~~~~~~~~i~~~~~---~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 616 (992)
..+..+++...+++. +++-++|-.+.-++..+..... +.+.+++|.++..++...+.-..
T Consensus 497 ~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En--------------- 561 (1010)
T KOG1991|consen 497 PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN--------------- 561 (1010)
T ss_pred hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---------------
Confidence 234567777778877 6677899888899999998887 44899999999999987652100
Q ss_pred CCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHH----HhcccC---CChhHHHHH
Q 001945 617 FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKIL----VRHASY---FHEDVRYQA 689 (992)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~vr~~a 689 (992)
..-..++-.++...++.+.||..++...+ .+.+.. .++..-..+
T Consensus 562 -----------------------------d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 562 -----------------------------DDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred -----------------------------hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 01123455566677788888866655543 333331 222222222
Q ss_pred HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 001945 690 VFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATL 769 (992)
Q Consensus 690 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~ 769 (992)
..+. +++++...++.+....|+.++++-+.+++.+..++.++ -.++...+++.+..+.-.. ..+.+.+=.+++.+.
T Consensus 613 iaA~-GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~--~~Isp~mW~ll~li~ 688 (1010)
T KOG1991|consen 613 IAAS-GILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLS--KEISPIMWGLLELIL 688 (1010)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhh--cccCHHHHHHHHHHH
Confidence 2222 22233333333333456677777777777766666543 2344444444333222111 112334444455555
Q ss_pred HHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChH---HHHHHHHHHHHHhhcCCCC-ccchhhH
Q 001945 770 LLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFA---PIFAKLFDPLMKFAKSSRP-LQDRTMV 845 (992)
Q Consensus 770 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~l~~~~~-~~~r~~a 845 (992)
.++.+.. -.-+..+.-++..+.+.-++.+. .|...++..+.+.+.+.+. ...+..|
T Consensus 689 e~~~~~~--------------------~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a 748 (1010)
T KOG1991|consen 689 EVFQDDG--------------------IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESA 748 (1010)
T ss_pred HHHhhhh--------------------HHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 5444321 01222344455555544344332 3666777777777765432 2367789
Q ss_pred HHHHHHHHhhcCCchhhcHhhhHHHHHHhcCC--CChHhHHHHHHHHHHHHhhcCcchhhHH------HHHHHhhhhhhC
Q 001945 846 VATLAEVARDMGSPIAAYVDRVMPLVLKELAS--PDAMNRRNAAFCVGELCKNGGESALKYY------GDILRGLYPLFG 917 (992)
Q Consensus 846 l~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~------~~~l~~l~~~l~ 917 (992)
...+..++-.++....+|+|.++...+..+.. .+...|.-+..-+....-+.|....+++ ..+.+.+.+.+.
T Consensus 749 ~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~ 828 (1010)
T KOG1991|consen 749 CKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFIN 828 (1010)
T ss_pred HHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 99999998888777778999999999998876 5555666655555554444443221111 122233333332
Q ss_pred CCCCChhhHhhHHHHHHHHHHhC--CCCCC--hhhHHHHHH
Q 001945 918 DSEPDDAVRDNAAGAVARMIMVN--PQSIP--LNQVLPVLL 954 (992)
Q Consensus 918 ~~~~~~~~~~n~~~~l~~l~~~~--~~~~~--~~~~l~~~l 954 (992)
... +..-+.-++-.+++++.-. |+... +.++.++++
T Consensus 829 ~~~-~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv 868 (1010)
T KOG1991|consen 829 QFK-KVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALV 868 (1010)
T ss_pred HHH-hhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 111 1222333556677777762 32222 456666544
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=8.4e-13 Score=134.93 Aligned_cols=394 Identities=15% Similarity=0.172 Sum_probs=281.6
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh-cCCccchH
Q 001945 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI-ESPAPLLG 242 (992)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~-~~~~~~~~ 242 (992)
+.++++| ..-+-|++|..-+.+++...-...+...++..+..+..- ...+++..-+.+++-.+...+ ....+- .
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d---~a~s~~~n~rkGgLiGlAA~~iaLg~~~-~ 79 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGD---YAYSPHANMRKGGLIGLAAVAIALGIKD-A 79 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH---hccCcccccccchHHHHHHHHHHhcccc-H
Confidence 4566777 667778888777766665432222333344444444332 333333222223322222211 111111 2
Q ss_pred HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHH
Q 001945 243 DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEV 322 (992)
Q Consensus 243 ~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~ 322 (992)
+++..+++..+.+++++ +..+|..|++-+..+++.....+. .+...++.++..+..+.+. ..+.+.+.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd~--------~V~~~aeL 147 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSDQ--------NVRGGAEL 147 (675)
T ss_pred HHHHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCcc--------ccccHHHH
Confidence 25566666666666655 788999999999999875443322 2666777777777776653 34456778
Q ss_pred HHHHHHHcc-----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001945 323 IDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (992)
Q Consensus 323 l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (992)
++++..... .--++.++|.+.+.+...++..|...+.++..+-...+-.+..+++.+++.++..|.|+++.||..
T Consensus 148 LdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 148 LDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 888877665 223588999999999999999999999999988887777888999999999999999999999999
Q ss_pred HHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCH-h
Q 001945 398 ASFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR-N 475 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~ 475 (992)
+-.+++.+...+..+-.. .+.+.++.+...++.+++.+|..|...+..|+.-.++.+.+|...++..+++++.+++. +
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc
Confidence 999999998876432222 46788999999999999999999999999999999999999999999999999998776 4
Q ss_pred HHHHHHHHHHHHHHHhhccCc---ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHH
Q 001945 476 LQETCMSAIGSVAAAAEQAFI---PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAI 552 (992)
Q Consensus 476 v~~~a~~~l~~l~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 552 (992)
++..+...-+.+...++.... --+..++..+.+.+... ....|..+++.+..+-...+. .+..+..++++.++
T Consensus 308 i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~---~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD---REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLL 383 (675)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHH
Confidence 666665554444444332221 23567888888887543 233456789999988877755 56678889999999
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHcc
Q 001945 553 SGFGLEFSELREYTHGFFSNIAGVLE 578 (992)
Q Consensus 553 ~~l~~~~~~~r~~~~~~~~~i~~~~~ 578 (992)
+.+.+.+.++...+...++.+|..-.
T Consensus 384 ~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 384 KTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 99999888888888888888886543
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=9e-13 Score=134.73 Aligned_cols=383 Identities=14% Similarity=0.140 Sum_probs=278.7
Q ss_pred hHHHHHHHHHHHHHHcc----hhchHHHHH-HHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC
Q 001945 315 PDRAAAEVIDTMALNLA----KHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~----~~~~~~~~~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (992)
-|++|+--+..+...+- .+.+..+++ .+.+...+++...|.+++.+++.++-+.......++..+++.++.+++|
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D 95 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD 95 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence 45666655655555433 233445555 4566778888888889999999988776655556899999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc--cccchHHHHHHHHH
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLA 467 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~l~~~l~~ 467 (992)
++..||.-||..+-.+++..+.++..+++.++..+.+...|.+..||. +...+.++++....+ -.-.++.+++.|..
T Consensus 96 ~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~e 174 (675)
T KOG0212|consen 96 QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRE 174 (675)
T ss_pred ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 999999999999999999988888889999999999999999888875 456777777765322 13467788888888
Q ss_pred HhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHH
Q 001945 468 ALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPF 547 (992)
Q Consensus 468 ~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i 547 (992)
.+...++..|...++-+..+-...+-.|..|.+.+++.|.+.+...++ .+|..+=.+++.+...+..+.-.-..++.
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~---eVr~~~~t~l~~fL~eI~s~P~s~d~~~~ 251 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD---EVRTLTDTLLSEFLAEIRSSPSSMDYDDM 251 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH---HHHHHHHHHHHHHHHHHhcCccccCcccc
Confidence 888888999999888888887777778899999999999999965443 33433445566665555432222144677
Q ss_pred HHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhh
Q 001945 548 VEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAH 627 (992)
Q Consensus 548 ~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (992)
++.++..++.+++.++..++..+..++...|.++.+|++.++..++.++..+++.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~------------------------- 306 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM------------------------- 306 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc-------------------------
Confidence 7888888888899999999999999999999999999999999999887643211
Q ss_pred hhccccceeeecchhhhHHHHHH-HHHHHHHH-hcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhc
Q 001945 628 CERSVRNISVRTGVLDEKAAATQ-ALGLFALH-TKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQ 705 (992)
Q Consensus 628 ~~~~~~~~~~~~~~~~~k~~a~~-~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 705 (992)
+ +-+.+...-. ++..+... .++.+ -+..+++.+.+.+.+..++.|.++..-+..+....
T Consensus 307 ------~------i~~~a~~~n~~l~~l~s~~~~~~~i--d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~----- 367 (675)
T KOG0212|consen 307 ------S------IKEYAQMVNGLLLKLVSSERLKEEI--DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA----- 367 (675)
T ss_pred ------c------HHHHHHHHHHHHHHHHhhhhhcccc--chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-----
Confidence 0 0000111111 11111111 12221 25577788888888888899998888777665542
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 001945 706 SHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIIND 751 (992)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 751 (992)
|..+..+.+.+++.+++.+.+ ++.+++...++.++.++..
T Consensus 368 -----p~ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 368 -----PGQLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICSS 407 (675)
T ss_pred -----cchhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhcC
Confidence 344556677888888888754 4667788888888887754
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.68 E-value=3.1e-13 Score=155.19 Aligned_cols=508 Identities=17% Similarity=0.195 Sum_probs=340.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC---CC-CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK---DP-QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~---~p-~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 78 (992)
+++.+++.... .+...|+++-..+-.+.. +. ......+..+. +++...|+++-..+.... .-+++..-.
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~-----~~~~~~~~l 79 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYL-----HEDPELLIL 79 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHT-----TTSHHHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHh-----hcchhHHHH
Confidence 34445554444 477788888888755432 22 23445555444 778999999988887764 345666666
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH
Q 001945 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (992)
Q Consensus 79 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 158 (992)
+.+.+.+-|. ++++.+|..+..+++.+...+ -.+.+.+.+.+++.++++.+|..|+.++..+....++.+...
T Consensus 80 ~~n~l~kdl~-~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLN-SPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHC-SSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhc-CCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 7777777777 489999999999999988543 467899999999999999999999999999998877654332
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
+++.+.+.+.+ +++.|+.+|+.++..+ ... + ..+..+++.+...+.+.+...++-....+++.+..++...+
T Consensus 153 -~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~-~----~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 153 -LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCN-D----DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp -HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCT-H----HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred -HHHHHhhhccC-CcchhHHHHHHHHHHH-ccC-c----chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 67888888888 9999999999999888 221 1 11226678888887777778888888888888887776555
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHH
Q 001945 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (992)
Q Consensus 239 ~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~ 318 (992)
..... ..+++.+.....+. ++.+...++.++..+....+ .+..+++.+..++...+. +.+-.
T Consensus 225 ~~~~~--~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~-------nvr~~ 286 (526)
T PF01602_consen 225 EDADK--NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDP-------NVRYI 286 (526)
T ss_dssp HHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSH-------HHHHH
T ss_pred hhhhH--HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccc-------hhehh
Confidence 44311 23444444443322 56666666666654443221 344577777777774432 57777
Q ss_pred HHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC-CChhHHHH
Q 001945 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGA 397 (992)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~ 397 (992)
+.+++..++...+..+..... .+.....+++...|..++..+..++.. .+...+++.+.+.+.+ .++.+|..
T Consensus 287 ~L~~L~~l~~~~~~~v~~~~~-~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 287 ALDSLSQLAQSNPPAVFNQSL-ILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp HHHHHHHHCCHCHHHHGTHHH-HHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred HHHHHHHhhcccchhhhhhhh-hhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhh
Confidence 888877777665433331111 122223478889999999999988875 4566788888888854 47789999
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-CCHhH
Q 001945 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNL 476 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~v 476 (992)
++..++.++..+.+ .....++.+++.+......+...++..+..++...+.. ...++..+...+.+ .++.+
T Consensus 360 ~i~~I~~la~~~~~----~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~ 431 (526)
T PF01602_consen 360 LIKAIGDLAEKFPP----DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEA 431 (526)
T ss_dssp HHHHHHHHHHHHGS----SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHH
T ss_pred HHHHHHHHHhccCc----hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHH
Confidence 99999999988743 33456677777777776777888888888888765432 34456666766665 46778
Q ss_pred HHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC
Q 001945 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (992)
Q Consensus 477 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 556 (992)
+..++.++|..+...++ .. ....++..+.+.+.. +...+|...+.++..+....+... ..+.+++.+.+..+
T Consensus 432 ~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~---~~~~vk~~ilt~~~Kl~~~~~~~~---~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 432 LAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE---ESPEVKLQILTALAKLFKRNPENE---VQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHSCSTT---HHHHHHHHHHCHHH
T ss_pred HHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhCCchh---hHHHHHHHHHHHhc
Confidence 89999999988877665 11 344445545444432 333456667777777664432211 12356666665555
Q ss_pred --CCCchhhHHHHHHHHHH
Q 001945 557 --LEFSELREYTHGFFSNI 573 (992)
Q Consensus 557 --~~~~~~r~~~~~~~~~i 573 (992)
+.++++|+.+...+.-+
T Consensus 504 ~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 504 EDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HS-SSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 66899999998877644
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.8e-08 Score=113.63 Aligned_cols=771 Identities=13% Similarity=0.139 Sum_probs=402.3
Q ss_pred CCCHHHHHHHHHHHHHHh--CC------CCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhcccCCCHHHHH--HHHH
Q 001945 14 MPDNDARRQAEDQIKRLA--KD------PQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ--LVKQ 81 (992)
Q Consensus 14 s~d~~~r~~A~~~l~~~~--~~------p~~~~~l~~il~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~--~i~~ 81 (992)
+.|..+++.+-.-|..+. ++ +.....+..++. -+..|.+|..|...++..+..--...+.++-. ..-.
T Consensus 106 stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak 185 (1176)
T KOG1248|consen 106 STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAK 185 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHH
Confidence 678889999888886653 22 223344444442 36678999999988888876432222222111 1122
Q ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHc--ccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH-H
Q 001945 82 SLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-A 158 (992)
Q Consensus 82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~ 158 (992)
..++.+.+.-.+......-+.+..+-. +.+|......+-..++......+..++..+++++..++...+..+.... .
T Consensus 186 ~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a 265 (1176)
T KOG1248|consen 186 FCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNA 265 (1176)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 223333322111111122222222211 1133323333555666666777888999999999999887766443222 2
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
.++..+.+.--+..+..+-.+-++++.......... .......-+|.++..+..++.+..++....+-+++.++.+...
T Consensus 266 ~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~-q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv 344 (1176)
T KOG1248|consen 266 RLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATL-QEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESV 344 (1176)
T ss_pred HHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHh-CHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccC
Confidence 344444444333345555555555554433222111 1222344567788877777777888888889999999988766
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHH
Q 001945 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (992)
Q Consensus 239 ~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~ 318 (992)
...+..-...+.-++.+ + .-.+-..++.++..+.+..+.. ..+++.+.+..+..+=.. ++...+..
T Consensus 345 ~~~~~~c~~~~~~~l~~---k--f~~~~~~ilqi~s~~fek~G~~--s~~~l~~~L~~l~~lr~~-------~d~~~~~~ 410 (1176)
T KOG1248|consen 345 TVIDALCSKQLHSLLDY---K--FHAVWRFILQILSALFEKCGEL--SGPELTKTLEGLCDLRAS-------PDFFHKLQ 410 (1176)
T ss_pred cccHHHHHHHHHHHHcc---h--HHHHHHHHHHHHHHHHHHhhhh--cCHHHHHHHHHHHHhhcC-------CCCccHHH
Confidence 63222222212211110 1 1122334555555555544431 112333343333222111 11233445
Q ss_pred HHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHH-HHHHhHHHHHHHHHhh------cCCC-
Q 001945 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGA------LRDP- 390 (992)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~------l~d~- 390 (992)
...|++....++|...+-.++|.=. ...+ .+..=.|.|-.+-++... .+.-+...++|....+ +.+.
T Consensus 411 ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s--~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~ 485 (1176)
T KOG1248|consen 411 LDQCIGSAVRAMGPERVLTILPLNL---HAES--LSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAG 485 (1176)
T ss_pred HHHHHHHHHHhhCHHHHHHHcchhc---cccc--cccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 6677888888888555545554321 1111 111112222222221110 1111122333333332 2222
Q ss_pred Ch--hHHHHHHHHHHH---hHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh---c------ccccc
Q 001945 391 EQ--FVRGAASFALGQ---FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---G------EEILP 456 (992)
Q Consensus 391 ~~--~vr~~a~~~l~~---l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~---~------~~~~~ 456 (992)
++ .++.-.....+- ||.. +-+....+..+.+.+...+.... ..|...|.+|..+++.. . ..+..
T Consensus 486 ~~~~~~~tl~~QLW~LLP~FC~~-P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~ 563 (1176)
T KOG1248|consen 486 SQVSLYDTLVDQLWSLLPGFCNY-PVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSN 563 (1176)
T ss_pred CcHHHHHHHHHHHHHhChhhhCC-CccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhh
Confidence 22 222222222222 2222 23455668888999998888764 89999999999999874 1 23456
Q ss_pred chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHhcc-Chh-hhHh---HHHHHHHHHH
Q 001945 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLT-NDE-DLRS---RARATELLGL 530 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~-~~~-~~~~---~~~~~~~l~~ 530 (992)
|..+.++.+++....+...-+ ..+.+......... ..+..-...+...+.+.+... .+. +... ....++.+..
T Consensus 564 ~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~ 642 (1176)
T KOG1248|consen 564 DAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIA 642 (1176)
T ss_pred hhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHh
Confidence 888999999998776544333 33333333333332 233333344444444444321 111 1111 1122333333
Q ss_pred HHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCc
Q 001945 531 VAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSD 610 (992)
Q Consensus 531 l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~ 610 (992)
++.......+..+. .+++. ..+..+..++..++..+..++.. +....+..+-+..+.+.+...
T Consensus 643 ~a~~~~e~~vs~l~-~v~~~---~e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds----------- 705 (1176)
T KOG1248|consen 643 LAPVQTESQVSKLF-TVDPE---FENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDS----------- 705 (1176)
T ss_pred hhccccchhHHHHH-HhhHH---hhccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHH-----------
Confidence 33222111121111 22222 22233567888888888888776 112222333333333222100
Q ss_pred chhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHH
Q 001945 611 DENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAV 690 (992)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~ 690 (992)
.++..-..+..++.+|..+.+..+.....+++..++.++-.....+..-|..|+
T Consensus 706 --------------------------~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af 759 (1176)
T KOG1248|consen 706 --------------------------FQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAF 759 (1176)
T ss_pred --------------------------HhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHH
Confidence 000111257889999999998888666677777777766666888999999999
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 001945 691 FALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL 770 (992)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~ 770 (992)
.+|..+... ....+. +..+ ....++.+++.+...+..+. .....+-+-+++.++..++...-.+.+..+++.+.-
T Consensus 760 ~lL~~i~~i-~~~~d~-g~e~--~~~~lnefl~~Isagl~gd~-~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~ 834 (1176)
T KOG1248|consen 760 ALLVFIGAI-QSSLDD-GNEP--ASAILNEFLSIISAGLVGDS-TRVVASDIVAITHILQEFKNILDDETLEKLISMVCL 834 (1176)
T ss_pred HHHHHHHHH-Hhhhcc-cccc--hHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999888741 111111 1111 22233333444333332332 222222256666677666644456777888887776
Q ss_pred HHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCC-ChHHHHHHHHHHHHHhhcCCCCccchhhHHHHH
Q 001945 771 LLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP-HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATL 849 (992)
Q Consensus 771 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l 849 (992)
.|.... ..+..++..++..++..++. ...++.+.++|.++.++.+.+. ..|...-..+
T Consensus 835 ~L~s~s--------------------reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~-~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 835 YLASNS--------------------REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI-KVRKKVRLLL 893 (1176)
T ss_pred HHhcCC--------------------HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 665432 13455677788888888777 4567889999999998876544 5788888888
Q ss_pred HHHHhhcCCc-hhhcHhhhHHHHHHhcC
Q 001945 850 AEVARDMGSP-IAAYVDRVMPLVLKELA 876 (992)
Q Consensus 850 ~~~~~~~~~~-~~~~~~~~~~~ll~~l~ 876 (992)
..+++.+|.. +.+++|...--++..++
T Consensus 894 ekLirkfg~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred HHHHHHhCHHHHHhhCHHHHHHHHHHHH
Confidence 8899998865 44565544444444443
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.62 E-value=1.5e-10 Score=131.00 Aligned_cols=469 Identities=12% Similarity=0.088 Sum_probs=290.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 78 (992)
.-+-.++..+.+.|-+.||-..-.+.++.+ +|+......+.+++ +++|.+|-+|...+.+.- .++..+.
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~~i~e~ 140 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-------VSSVLEY 140 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cHHHHHH
Confidence 345566777778888888888888877765 67754444444443 567888888876665542 3566667
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC-CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH
Q 001945 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG-EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (992)
Q Consensus 79 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 157 (992)
+...+.+++. +.++.||+.++.++..+.... |+. .-.++++.+.+++.++++.+..+|+.+|..+.+..+..+. ..
T Consensus 141 l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~ 217 (746)
T PTZ00429 141 TLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SS 217 (746)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HH
Confidence 7777777776 689999999999999988754 221 1235677888888999999999999999999876554332 22
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
...+.-+...+.+ -++--+...++++.. +.+... ... -.+++.+...+++.++.+...+++++..+....
T Consensus 218 ~~~~~~Ll~~L~e-~~EW~Qi~IL~lL~~---y~P~~~--~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 218 NEWVNRLVYHLPE-CNEWGQLYILELLAA---QRPSDK--ESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHHHHHHhhc-CChHHHHHHHHHHHh---cCCCCc--HHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 2333344455554 344455566666643 332211 111 235555555667778889999999888887543
Q ss_pred -ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchH
Q 001945 238 -APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (992)
Q Consensus 238 -~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~ 316 (992)
+......+..+...++.+. ++ ++++|..++..+..+....|..+.. -+..++-...+ ....+
T Consensus 288 ~~~~~~~~~~rl~~pLv~L~-ss--~~eiqyvaLr~I~~i~~~~P~lf~~------~~~~Ff~~~~D--------p~yIK 350 (746)
T PTZ00429 288 SQELIERCTVRVNTALLTLS-RR--DAETQYIVCKNIHALLVIFPNLLRT------NLDSFYVRYSD--------PPFVK 350 (746)
T ss_pred CHHHHHHHHHHHHHHHHHhh-CC--CccHHHHHHHHHHHHHHHCHHHHHH------HHHhhhcccCC--------cHHHH
Confidence 2333333333334334442 22 6789999998888888766654432 12222221111 11234
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHH
Q 001945 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRG 396 (992)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 396 (992)
... |+.+.....+.-+..++.-+.++..+.+...+..++.++|.++...+. ....++..++..+.+....+.
T Consensus 351 ~~K---LeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v~- 422 (746)
T PTZ00429 351 LEK---LRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELLP- 422 (746)
T ss_pred HHH---HHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhHH-
Confidence 444 444444444444556666677777788889999999999999986654 345666777777765444443
Q ss_pred HHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc---cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC
Q 001945 397 AASFALGQFAEYLQPEIVSHYESVLPCILNALE---DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (992)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (992)
.++..+..+.+..+.. + +++.++..+. -.++..+...+|.++.+++..++ .+.++..+++.+...+
T Consensus 423 e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~ 491 (746)
T PTZ00429 423 QVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHE 491 (746)
T ss_pred HHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCC
Confidence 5677777776665432 1 4555554331 12467888999999998765432 4566666666666677
Q ss_pred HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 474 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
..+|.+.+.+...+....+... ...+..+.+.... ++++..+|.+|......+.
T Consensus 492 ~~VqlqlLta~vKlfl~~p~~~----~~~l~~vL~~~t~-~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 492 QRVQLAILSAAVKMFLRDPQGM----EPQLNRVLETVTT-HSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred HHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHc
Confidence 8899999998888877655332 2223333332222 2233456666766665553
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2e-13 Score=142.44 Aligned_cols=356 Identities=15% Similarity=0.155 Sum_probs=248.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001945 120 LPFLFQFSQSEQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (992)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (992)
.+.+.+.+.+++...+..+...+..+...-. +.-.-....+++.+..++..+.++.++..|.++|.+++....+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5666677777777778888888888765432 11111122578889999986478999999999999999876433222
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001945 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (992)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (992)
..-..-+|.++ +++.+++.+++..++++|..++...+.+=+-.+. ..+..++......+ ..
T Consensus 148 vv~agavp~fi----~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~-~~------------- 209 (514)
T KOG0166|consen 148 VVDAGAVPIFI----QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD-KL------------- 209 (514)
T ss_pred cccCCchHHHH----HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc-ch-------------
Confidence 11234455544 4567788999999999999999875542222111 12222222222211 11
Q ss_pred HHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc-c---hhchHHHHHHHHhhhcCCChh
Q 001945 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-A---KHVFPPVFEFASVSCQNASPK 352 (992)
Q Consensus 277 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~-~---~~~~~~~~~~l~~~l~~~~~~ 352 (992)
...+.+..++..+++.. + -+.+..++|.+...+.+.|..
T Consensus 210 -------------------------------------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 210 -------------------------------------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEE 252 (514)
T ss_pred -------------------------------------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence 22333444444444433 2 134456788888889999999
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc-
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE- 429 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~- 429 (992)
+..-|+|++++++++..+.+.-.++ .++|.++..|.++++.|+..|++++|.++..-....+..+ ...+|.+...+.
T Consensus 253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 9999999999999998887766654 5889999999999999999999999998877644333333 578899988888
Q ss_pred cCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHH--HHHHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAE--RVLELL 506 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l 506 (992)
.+...++..|||+++++.......+..+++ .+++.|+.+++..+.++|.+|..+++.+......+-..|+- .+++.+
T Consensus 333 s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl 412 (514)
T KOG0166|consen 333 SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL 412 (514)
T ss_pred CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh
Confidence 556679999999999999877666665555 88999999999999999999999999998766555555552 266777
Q ss_pred HHHHhccChhhhHhHHHHHHHHHHHHH
Q 001945 507 KIFMVLTNDEDLRSRARATELLGLVAE 533 (992)
Q Consensus 507 ~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (992)
..++...+.+ +-..+++++..+-.
T Consensus 413 cdlL~~~D~~---ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 413 CDLLTCPDVK---IILVALDGLENILK 436 (514)
T ss_pred hhcccCCChH---HHHHHHHHHHHHHH
Confidence 7777443322 22356777777663
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.62 E-value=2.3e-10 Score=129.51 Aligned_cols=503 Identities=11% Similarity=0.105 Sum_probs=307.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCCC---cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLA-KDPQ---VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~-~~p~---~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i 79 (992)
++.++-..+.+.|...|+.|-+.+-.+- ..-+ .....+..+ .+++..+|++.-.++.+.. ...++..-..
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~-~S~d~elKKLvYLYL~~ya-----~~~pelalLa 106 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLA-PSTDLELKKLVYLYVLSTA-----RLQPEKALLA 106 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHh-CCCCHHHHHHHHHHHHHHc-----ccChHHHHHH
Confidence 3445555566778888888888774433 3222 334444433 3668999999999888763 3446655566
Q ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 001945 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (992)
Q Consensus 80 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 159 (992)
.+.+.+-+. ++++.+|-.+...++.|.. + ...+.+++.+.+++.+.++-+|..|..++..+....++.+. -..
T Consensus 107 INtl~KDl~-d~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--~~~ 179 (746)
T PTZ00429 107 VNTFLQDTT-NSSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--QQD 179 (746)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--ccc
Confidence 677777777 5899999777777666543 2 24566888889999999999999999999999877665432 123
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 160 i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
+++.+..++.+ +++.|...|+.+|..+....++. .......+..++. .+.+-++......++.|.... |.
T Consensus 180 ~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~----~L~e~~EW~Qi~IL~lL~~y~---P~ 249 (746)
T PTZ00429 180 FKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVY----HLPECNEWGQLYILELLAAQR---PS 249 (746)
T ss_pred hHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHH----HhhcCChHHHHHHHHHHHhcC---CC
Confidence 55666777888 99999999999999987654321 2222333333333 333334445555666664432 21
Q ss_pred chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHH
Q 001945 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (992)
Q Consensus 240 ~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (992)
-......+++.+...+.+. .+.+...++.++..+........... ....+...++.++. .+. +.+-.+
T Consensus 250 -~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~~-~~~rl~~pLv~L~s-s~~-------eiqyva 317 (746)
T PTZ00429 250 -DKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIER-CTVRVNTALLTLSR-RDA-------ETQYIV 317 (746)
T ss_pred -CcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHHH-HHHHHHHHHHHhhC-CCc-------cHHHHH
Confidence 1223345666665555554 67777777777766653221111110 11122233333322 221 566677
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001945 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (992)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (992)
...+..+....+.-+.+ -+..+....+++. .+|...+..+..++.. .++..|+.-+.....+.+..++..++
T Consensus 318 Lr~I~~i~~~~P~lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane------~Nv~~IL~EL~eYa~d~D~ef~r~aI 389 (746)
T PTZ00429 318 CKNIHALLVIFPNLLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTP------SVAPEILKELAEYASGVDMVFVVEVV 389 (746)
T ss_pred HHHHHHHHHHCHHHHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCc------ccHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 77777777666532222 2333333345554 4788999999888875 45667788888888888999999999
Q ss_pred HHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHh---cCCCHhH
Q 001945 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL---ENSPRNL 476 (992)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~v 476 (992)
.++|.++..++. ....++..+++.+.+... +...++..+..+++..+... ++..|...+ .-.++..
T Consensus 390 rAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~A 458 (746)
T PTZ00429 390 RAIASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL------MLDTLVTDYGADEVVEEEA 458 (746)
T ss_pred HHHHHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH------HHHHHHHhhcccccccHHH
Confidence 999999987743 344566777777765433 44467888888888776531 344444433 1245778
Q ss_pred HHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc-
Q 001945 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF- 555 (992)
Q Consensus 477 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l- 555 (992)
|...++.+|..+...++ .+ ..+..++....++...+|...+.+...+.... + +.....+..+++..
T Consensus 459 KaaiiWILGEy~~~I~~-----a~---~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-p----~~~~~~l~~vL~~~t 525 (746)
T PTZ00429 459 KVSLLWMLGEYCDFIEN-----GK---DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-P----QGMEPQLNRVLETVT 525 (746)
T ss_pred HHHHHHHHHhhHhhHhh-----HH---HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHHHH
Confidence 88889999988765432 12 23333343323334445555555555443222 2 12334444555322
Q ss_pred C-CCCchhhHHHHHHHHHH
Q 001945 556 G-LEFSELREYTHGFFSNI 573 (992)
Q Consensus 556 ~-~~~~~~r~~~~~~~~~i 573 (992)
+ ++++++|+.++..|.-+
T Consensus 526 ~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 526 THSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred hcCCChhHHHHHHHHHHHH
Confidence 2 46789999998766544
No 38
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.2e-12 Score=128.74 Aligned_cols=451 Identities=15% Similarity=0.191 Sum_probs=278.6
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhh--cCCHhHHHH
Q 001945 21 RQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL--EHSAPVRRA 98 (992)
Q Consensus 21 ~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~--~~~~~vr~~ 98 (992)
.+|..+|++++..++.|..+-+++....+.....+|+..+|+.+...+..+++..-..+|+.++..+.. +..+.+|.+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQ 81 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQ 81 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHH
Confidence 478999999999999999999999877788899999999999999999999998888888866655542 344599999
Q ss_pred HHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh---------------hcccccHHHHHHH
Q 001945 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG---------------QTFRPHFADMQAL 163 (992)
Q Consensus 99 ~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~---------------~~~~~~~~~i~~~ 163 (992)
++-+++.++-+. | .|.+-++.+++.+.+..+. .-.-+.+|..+.+... +.+.+....++..
T Consensus 82 L~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~ 157 (559)
T KOG2081|consen 82 LAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVF 157 (559)
T ss_pred HHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHH
Confidence 999999999876 2 7999888888888777665 3445566666665432 1223445556777
Q ss_pred HHHhcCCC--CChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc------------------------
Q 001945 164 LLKCLQDE--TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS------------------------ 217 (992)
Q Consensus 164 l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~------------------------ 217 (992)
+..+++.. ++..+-..++++++++.....-+.+ .+-... .++..++..++.
T Consensus 158 l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d--~v~a~~-pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~ 234 (559)
T KOG2081|consen 158 LSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD--QVLASF-PLITLAFRSLSDDELHEEATECICALLYCSLDRSEG 234 (559)
T ss_pred HHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH--HHHhhh-HHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhcc
Confidence 77787752 2355667778888887663221110 000010 122222222221
Q ss_pred ------------------------CCHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHHhhCCCCChHHH
Q 001945 218 ------------------------GEEDVAVIAFEIFDELIE-------SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTR 266 (992)
Q Consensus 218 ------------------------~~~~~~~~~~~~l~~l~~-------~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r 266 (992)
.+.+.....++.+.++.+ ..+..+- .+++.++-+.+.+ +.++-
T Consensus 235 ~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l----~~vellLl~~~h~--~~evi 308 (559)
T KOG2081|consen 235 LPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFL----RIVELLLLVAGHN--DTEVI 308 (559)
T ss_pred CchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcch----hHHHHHHHhccCC--chhhh
Confidence 112222222222222222 1111111 1222223333333 44666
Q ss_pred HHHHHHHHHHHHhhHh----Hhhh--cCChHHHHHHHhhhhccCCC-----CCCCCCCchHHHHHHHHHHHHHHcc-hhc
Q 001945 267 HQAIQIISWLAKYKYN----SLKK--HKLVIPILQVMCPLLAESNE-----AGEDDDLAPDRAAAEVIDTMALNLA-KHV 334 (992)
Q Consensus 267 ~~a~~~l~~l~~~~~~----~~~~--~~~~~~il~~l~~~l~~~~~-----~~~d~~~~~~~~a~~~l~~l~~~~~-~~~ 334 (992)
...+.+|..+.+.-.. .... .++...++..+.....-..+ +++++....|....+.+..++..+| ...
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 7777788776552110 1111 12444555555554443321 1222334567778888888888888 556
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH
Q 001945 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (992)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (992)
+..+...+.+ ++++|..-+|+++.+..++.+....-.+.++.++..+.+.- ....+|++++..+|.+++++. ...
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~-~~p 463 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVE-QHP 463 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHH-hCc
Confidence 6666666555 67899999999999999999876544444555555555443 333499999999999999983 233
Q ss_pred hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC-CHhHHHHHHHHHHHHHHHhh
Q 001945 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 415 ~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~ 492 (992)
+.+..++..+...++... ....+..++..++..+...+.+.++.+...+..+.... +.+... .+..++.++...+
T Consensus 464 ~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 464 ELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCC
Confidence 455666677777777664 77888888999988886655555554444333322211 133333 5555555555443
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.59 E-value=1.5e-11 Score=141.24 Aligned_cols=472 Identities=18% Similarity=0.242 Sum_probs=325.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
-++++.+.+.|...|+-+.-.+..+.. +|+.+....+.+.+ ++++.+|..|...+.+.. +++..+.+..
T Consensus 45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~ 117 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIP 117 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHH
Confidence 355566678899999999999988775 56755555555543 678999999998887763 6788888888
Q ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcc-hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001945 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (992)
Q Consensus 82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i 160 (992)
.+.+.+. ++++.||+.++.++..+.+.. |+ ..+. +++.+.+++.++++.++..|+.++..+ ...++......+.+
T Consensus 118 ~v~~ll~-~~~~~VRk~A~~~l~~i~~~~-p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 118 DVIKLLS-DPSPYVRKKAALALLKIYRKD-PD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL 193 (526)
T ss_dssp HHHHHHH-SSSHHHHHHHHHHHHHHHHHC-HC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred HHHHHhc-CCchHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence 8888888 589999999999999999864 42 3344 799999999999999999999999999 33332222556677
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
...+.+.+.. .++-.+...++++..++...... ... ..+++.+. ..+++.++.+...++.++..+.....
T Consensus 194 ~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~--~~~-~~~i~~l~----~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 194 IRILCQLLSD-PDPWLQIKILRLLRRYAPMEPED--ADK-NRIIEPLL----NLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp HHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHH--HHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred HHHhhhcccc-cchHHHHHHHHHHHhcccCChhh--hhH-HHHHHHHH----HHhhccccHHHHHHHHHHHHhhcchH--
Confidence 7777777787 88999999999998776654211 100 22334343 44445667788888888876655322
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHH
Q 001945 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (992)
Q Consensus 241 ~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (992)
.+..+++.+...+.++ +..+|..+++.+..++...+..+.. .... +..+... ++...+..+.
T Consensus 264 ---~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~~l~~~~~~~v~~---~~~~----~~~l~~~------~d~~Ir~~~l 325 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSS--DPNVRYIALDSLSQLAQSNPPAVFN---QSLI----LFFLLYD------DDPSIRKKAL 325 (526)
T ss_dssp ---HHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHCCHCHHHHGT---HHHH----HHHHHCS------SSHHHHHHHH
T ss_pred ---HHHhhHHHHHHHhhcc--cchhehhHHHHHHHhhcccchhhhh---hhhh----hheecCC------CChhHHHHHH
Confidence 5566677777777654 7889999999999988766443331 1111 1122211 2236777777
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001945 321 EVIDTMALNLAKHVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (992)
Q Consensus 321 ~~l~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (992)
+.+..++..-. +..+++.+...+ ...+...|..++..++.+++..+ +.....++.++..+...+..+...+.
T Consensus 326 ~lL~~l~~~~n---~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~----~~~~~~v~~l~~ll~~~~~~~~~~~~ 398 (526)
T PF01602_consen 326 DLLYKLANESN---VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP----PDAEWYVDTLLKLLEISGDYVSNEII 398 (526)
T ss_dssp HHHHHH--HHH---HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG----SSHHHHHHHHHHHHHCTGGGCHCHHH
T ss_pred HHHhhcccccc---hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC----chHHHHHHHHHHhhhhccccccchHH
Confidence 77766665443 333455554555 34477799999999999988643 33456778888888877788888888
Q ss_pred HHHHHhHhhhcHHHHhhhhhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHH
Q 001945 400 FALGQFAEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQE 478 (992)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~ 478 (992)
..+..+....+. ....++..++..+.+ ..+.++..++|.++.+.+..+. .. ....++..+.+.+...+..+|.
T Consensus 399 ~~i~~ll~~~~~----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~ 472 (526)
T PF01602_consen 399 NVIRDLLSNNPE----LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKL 472 (526)
T ss_dssp HHHHHHHHHSTT----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHhhcChh----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHH
Confidence 888888766432 123456677777765 4578899999999999887765 22 6677788888888777788999
Q ss_pred HHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 479 TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 479 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
.++.++..+....+..- ..+.+.+.+.+.... ++.+..+|.+|.+.+..+.
T Consensus 473 ~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~-~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 473 QILTALAKLFKRNPENE--VQNEILQFLLSLATE-DSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCchh--hHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHc
Confidence 99999999987755321 123556666665552 2334566777887777654
No 40
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-09 Score=118.21 Aligned_cols=471 Identities=14% Similarity=0.133 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhh
Q 001945 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQ 151 (992)
Q Consensus 73 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~ 151 (992)
++..+.+.+.|++.+. |.+..||..+|..++.++...-+ .--.+.+..+.+++.-. ++...++|+.+|.+++.. |=
T Consensus 336 ~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-Gl 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GL 412 (1133)
T ss_pred HHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CC
Confidence 4677888899999998 69999999999999999987621 12234455555544322 356678999999988743 21
Q ss_pred cccccHHHHHHHHHHhcCCC-------CChHHHHHHHHHHHHhhcccCChhhHHHH-HhhHHHHHHHHHHHhhcCCHHHH
Q 001945 152 TFRPHFADMQALLLKCLQDE-------TSNRVRIAALKAIGSFLEFTNDGAEVVKF-REFIPSILNVSRQCLASGEEDVA 223 (992)
Q Consensus 152 ~~~~~~~~i~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~ 223 (992)
.+...++++++++.+++..+ ....||.+|+..+.++.+..++. +...+ ..+.+.++. ..+-+++-..|
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l~p~l~~L~s~LL~---~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DLKPVLQSLASALLI---VALFDREVNCR 488 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-hhhHHHHHHHHHHHH---HHhcCchhhHh
Confidence 22345678899998888742 35679999999999999887543 22222 223333332 23345666789
Q ss_pred HHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhh-h
Q 001945 224 VIAFEIFDELIESPAPL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL-L 301 (992)
Q Consensus 224 ~~~~~~l~~l~~~~~~~-~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~-l 301 (992)
.+|..++.+.+.+.+.+ .+--+-..++ ...-..|..+..-+.......+ .|..++++.++.. +
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~d---------y~sV~~rsNcy~~l~~~ia~~~------~y~~~~f~~L~t~Kv 553 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTID---------YFSVTNRSNCYLDLCVSIAEFS------GYREPVFNHLLTKKV 553 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcc---------hhhhhhhhhHHHHHhHHHHhhh------hHHHHHHHHHHhccc
Confidence 99999999999876543 1111111111 1122334444433332221111 2556677666544 8
Q ss_pred ccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHH--HH-----
Q 001945 302 AESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM--KE----- 374 (992)
Q Consensus 302 ~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~--~~----- 374 (992)
..|+. ..|..++.+|..++...++......++-+.....+.+..-|++...+.+.+..++...- ..
T Consensus 554 ~HWd~-------~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~ 626 (1133)
T KOG1943|consen 554 CHWDV-------KIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDEN 626 (1133)
T ss_pred ccccH-------HHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 88876 67888999999999887755554444444455667888899999999988887543211 11
Q ss_pred hH---HHHHHHHHhhcCCC--ChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 375 KL---ESVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 375 ~l---~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.+ ..+++.+...-... ....|.+.+..+..+...-.+-..+.. +..-..+.+.+.+++ .+|..+.++++.++.
T Consensus 627 ~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 627 RIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 11 12233332222222 256777777777776654332112211 222223344445555 899999999999987
Q ss_pred hhccccccchHHHHHHHHHHhcCC-CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc-ChhhhHhHHHHHH
Q 001945 449 DMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT-NDEDLRSRARATE 526 (992)
Q Consensus 449 ~~~~~~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~ 526 (992)
..-..=.....+++...+..+.+. +..+|....-+++.+... .+.-.+.+.+ ...++... .+-+..-|...+.
T Consensus 706 ~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~---~i~~~~q~~l--c~~~l~~~p~d~~a~aR~~~V~ 780 (1133)
T KOG1943|consen 706 TYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE---LIHRHLQEKL--CKLVLELLPSDAWAEARQQNVK 780 (1133)
T ss_pred HHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH---hhchHHHHHH--HHHHhccCcccccHHHHHHHHH
Confidence 663211112224666666666554 566666655555544321 1111122222 22222222 2224445667788
Q ss_pred HHHHHHHhhchhhccCChHHHHHHHHhccCCC--------CchhhHHHHHHHHHHHHHcc
Q 001945 527 LLGLVAESVGRARMEPILPPFVEAAISGFGLE--------FSELREYTHGFFSNIAGVLE 578 (992)
Q Consensus 527 ~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~--------~~~~r~~~~~~~~~i~~~~~ 578 (992)
.+..++..++...+.....++++.+++++++- ..-+|++++.++..+...+.
T Consensus 781 al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 781 ALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 88888888876667778888888888887632 23489999998888876654
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.1e-11 Score=129.70 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=244.5
Q ss_pred CCChhHHHHHHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC---CCcchHHH
Q 001945 47 AKTPNVRQLAAVLLRKKITGH-WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPF 122 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~-~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~ 122 (992)
+.++..+..+...+|+.+.+. -..+..-.+..+...+++.|..+.++.++..++.++..|++...... .=..-+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 456666777777788776542 24455666778888999999877889999999999999998653221 12457888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHH
Q 001945 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (992)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 200 (992)
+.+++.+++..+++.|..+|+.++...+.. ..++ ..+++.+...+..+........+.++|+++++...+.......
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v 235 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV 235 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 999999999999999999999998665432 2222 1245666666666233467778999999999988544333333
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001945 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (992)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (992)
..+++++..++.+.|+++...+++++..+...........+. .+++.+..++.+. +..++..|+..+..++..
T Consensus 236 ----~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 236 ----APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeec
Confidence 445555556677889999999999999888765554433332 1333344444433 333333333333332211
Q ss_pred hHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-CCChhhHHHHH
Q 001945 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAV 358 (992)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~al 358 (992)
.... ... . +-...++.+...+. ++....|..|+
T Consensus 310 ~d~Q--------------------------------Tq~--------v------i~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 310 SDEQ--------------------------------TQV--------V------INSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred cHHH--------------------------------HHH--------H------HhcChHHHHHHHhccCcchhHHHHHH
Confidence 0000 000 0 00123444444555 55666899999
Q ss_pred HHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHH
Q 001945 359 TAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEV 435 (992)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v 435 (992)
|.++.|..|.++.+...+ ..++|.++..+...+..+|..|+|+++.++....++...|+ ..+++.++..|.-++.++
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 999999999998887775 45899999999988899999999999999887766655655 578999999998888888
Q ss_pred HHHHHHHHHHHHHhhc
Q 001945 436 KEKSYYALAAFCEDMG 451 (992)
Q Consensus 436 ~~~a~~~l~~l~~~~~ 451 (992)
...+..++.++.+...
T Consensus 424 i~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 424 ILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999887654
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-10 Score=129.78 Aligned_cols=564 Identities=15% Similarity=0.092 Sum_probs=361.5
Q ss_pred CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCC
Q 001945 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (992)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 171 (992)
+-.-|.....-++.++...+++..-.+++|++.+.+ .++..+...+..-++.+..+.+. ..+...+.+.+.....+
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~~- 170 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLATV- 170 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhHH-
Confidence 444555566666666665554434578999999988 66667777777777777766542 22333456666677777
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHH
Q 001945 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVH 250 (992)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~li~ 250 (992)
....||..++..+...+...+... ....++|.+.. ....+-...+..++..+.......+ ..++. .+.+
T Consensus 171 eet~vr~k~ve~l~~v~~~~~~~~---~~~~lv~l~~~----l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~ 240 (759)
T KOG0211|consen 171 EETGVREKAVESLLKVAVGLPKEK---LREHLVPLLKR----LATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRP 240 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHH---HHHHHHHHHHH----ccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHH
Confidence 888899999999998887764321 12223332222 2112111234556666666555444 33333 3344
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc
Q 001945 251 FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL 330 (992)
Q Consensus 251 ~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~ 330 (992)
...+++.+. ++.+|..+-.-+..++...++..... .+++....+.. |+..++|.+|.+.+..+...+
T Consensus 241 ~~~~lc~d~--~~~Vr~~~a~~l~~~a~~~~~~~~~s----~v~~~~~~L~~-------DdqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 241 IVQSLCQDD--TPMVRRAVASNLGNIAKVLESEIVKS----EVLPTLIQLLR-------DDQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHhhcccc--chhhHHHHHhhhHHHHHHHHHHHHHh----hccHHHhhhhh-------cchhhHHHHHHHHHHHHHHhc
Confidence 444555444 78888888777777776544422221 12233333332 223489999999998888877
Q ss_pred c-h-hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001945 331 A-K-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (992)
Q Consensus 331 ~-~-~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (992)
. . +....+.+.+.+..++.+|++|+.....+..+....... ..-...++.....++|....+|.++..-...++..
T Consensus 308 ~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 308 DDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred CCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 7 3 556667777778889999999988776666666544331 12235677888888999999999999999988888
Q ss_pred hcHHHH--hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 409 LQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 409 ~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
...... -....++|.+.....|.+..||...+.....+....+. ..-...+.+.+...+++..+.++.+....++.
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 752111 12345689998999999999998877766665544442 22334455566666777788899888877755
Q ss_pred HHHHhh-ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHH
Q 001945 487 VAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (992)
Q Consensus 487 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (992)
+-...+ .....+.+..+|.+...-. +..++.|...++.+-.++...|...|.+...+ .+...+.+....+|+.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~---d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~---l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAE---DLLWRVRLAILEYIPQLALQLGVEFFDEKLAE---LLRTWLPDHVYSIREA 537 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhcc---chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHH---HHHhhhhhhHHHHHHH
Confidence 544433 2344455667777665543 23678888889999998887775444433222 2233344556789999
Q ss_pred HHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhH
Q 001945 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEK 645 (992)
Q Consensus 566 ~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 645 (992)
+...+..++..+|... +...++|.++.....+ .+..|
T Consensus 538 aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~-----------------------------------------~y~~R 574 (759)
T KOG0211|consen 538 AARNLPALVETFGSEW--ARLEEIPKLLAMDLQD-----------------------------------------NYLVR 574 (759)
T ss_pred HHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCc-----------------------------------------ccchh
Confidence 9999999999998332 3445555555432210 12356
Q ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 001945 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIF 725 (992)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 725 (992)
...+.++..++..+|..+ +.+.+++.+..+..+..++||..++..|..++..... ....+.+ -.+
T Consensus 575 ~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~---------~~~~~~v----~pl 639 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE---------SVRDEEV----LPL 639 (759)
T ss_pred hHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch---------HHHHHHH----HHH
Confidence 777888888888887665 4777788888888999999999999999998776431 2222222 233
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHH
Q 001945 726 IRTMTEDDDKDVVAQACTSIVEIIN 750 (992)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~l~~~~~ 750 (992)
...+.++.+.+++..+..+.+.+..
T Consensus 640 l~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 640 LETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHhccCcccchhHHHHHHHHHHHH
Confidence 3334557778887776666665443
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=3.7e-07 Score=103.45 Aligned_cols=766 Identities=13% Similarity=0.090 Sum_probs=383.6
Q ss_pred CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh----cccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcc
Q 001945 35 QVVPALVQHLRT-AKTPNVRQLAAVLLRKKITG----HWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKY 109 (992)
Q Consensus 35 ~~~~~l~~il~~-~~~~~~r~~a~~~l~~~i~~----~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 109 (992)
++...+..+++. +.+..+++.+.-.|...+.. .|. .+..+..+...+ .... ...+.+|..+.+++..+...
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il-~~~~-h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGIL-AFAA-HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHH-HHHh-cCchHHHHHHHHHHHHHHcC
Confidence 345556665553 45777888888777777754 588 334455444333 3333 37899999999999998863
Q ss_pred c--CCCCCCcchHHHHHHhhc---C----CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHH
Q 001945 110 A--VPAGEWPDLLPFLFQFSQ---S----EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180 (992)
Q Consensus 110 ~--~~~~~~~~ll~~l~~~l~---~----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a 180 (992)
. .|...-|-.......++. + .........|.+|..++..+| .+.+..+...+....+. .+..++..+
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p---~~li~sl~e~lL~i~~~-s~v~v~~~~ 244 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFP---RPLIKSLCEVLLNITTE-SPVLVLLEV 244 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHhhccc-chHHHHHHH
Confidence 2 222233333222222221 1 111222344555555555544 34566677777788787 889999999
Q ss_pred HHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHH----HHHHhcCCccchHHHHHHHHHHHHHH
Q 001945 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEI----FDELIESPAPLLGDSVKSIVHFSLEV 255 (992)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~~~----l~~l~~~~~~~~~~~l~~li~~~~~~ 255 (992)
++|+.++....+... -..+...++..+...-.+.+. .....-+.. ...++.......-..++.++..++.+
T Consensus 245 ~q~l~~lf~~~~~~l----~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~ 320 (1176)
T KOG1248|consen 245 LQCLHSLFKKHPTAL----AAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTI 320 (1176)
T ss_pred HHHHHHHHhcCCCcc----hHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHH
Confidence 999999987765421 123345556655554333222 111111222 22333344444455666777777775
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHH-HhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhc
Q 001945 256 SSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQV-MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHV 334 (992)
Q Consensus 256 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~-l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~ 334 (992)
.... .++.-..+-+.+..+.+.... +.+.+-.. +..+|...-. ...+.+...+..+.+.+|+..
T Consensus 321 ~~s~--~~e~~q~a~q~l~~il~~sv~------~~~~~c~~~~~~~l~~kf~-------~~~~~ilqi~s~~fek~G~~s 385 (1176)
T KOG1248|consen 321 LESL--IEELVQAASQSLKEILKESVT------VIDALCSKQLHSLLDYKFH-------AVWRFILQILSALFEKCGELS 385 (1176)
T ss_pred Hhcc--cHHHHHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHcchHH-------HHHHHHHHHHHHHHHHhhhhc
Confidence 4433 333333444444444432222 11111111 1112211100 233445556666677777543
Q ss_pred hHHHHHHHH---hhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc-
Q 001945 335 FPPVFEFAS---VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ- 410 (992)
Q Consensus 335 ~~~~~~~l~---~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~- 410 (992)
-|.+.+.+. .+-.+++...+..-=.++|.....++.. .+-.++|.=+ ..+.....|..-+=.|......-.
T Consensus 386 ~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe---~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~L 460 (1176)
T KOG1248|consen 386 GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPE---RVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASL 460 (1176)
T ss_pred CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHH---HHHHHcchhc--cccccccchhHhHHHHHHhhccCcH
Confidence 344444433 3223444444444445566655554322 2223444322 223333344222222222221110
Q ss_pred HHHHhhhhhHHHHHH---HhcccCC--hHHHHHHHHHHHHHHHhh---ccccccchHHHHHHHHHHhcCCCHhHHHHHHH
Q 001945 411 PEIVSHYESVLPCIL---NALEDES--DEVKEKSYYALAAFCEDM---GEEILPFLDPLMGKLLAALENSPRNLQETCMS 482 (992)
Q Consensus 411 ~~~~~~~~~ll~~l~---~~l~~~~--~~v~~~a~~~l~~l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~ 482 (992)
..+.+++-.+...+. ..+.... .++-...+.-|-.++-.+ |..+..-+..+.+.+...+.... ++|...+.
T Consensus 461 a~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~ 539 (1176)
T KOG1248|consen 461 AFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICN 539 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHH
Confidence 011222211221221 1122221 112222222222222222 33444557777888777776644 88988888
Q ss_pred HHHHHHHHh---------hccCcccHHHHHHHHHHHHhccCh---hhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHH
Q 001945 483 AIGSVAAAA---------EQAFIPYAERVLELLKIFMVLTND---EDLRSRARATELLGLVAESVGRARMEPILPPFVEA 550 (992)
Q Consensus 483 ~l~~l~~~~---------~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~ 550 (992)
++..++... .+.+..|...++|.+.++.+.... +....|..-+..+.. +.|...-.++...
T Consensus 540 sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~-------~~~~~t~~dv~~~ 612 (1176)
T KOG1248|consen 540 SLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRV-------DYFTVTPTDVVGS 612 (1176)
T ss_pred HHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHH-------HHhhcccHHHHHH
Confidence 888887753 134567888899999998875422 222223333333321 1111111122222
Q ss_pred HHhccC----CCCchh----hHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCC
Q 001945 551 AISGFG----LEFSEL----REYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSS 622 (992)
Q Consensus 551 l~~~l~----~~~~~~----r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (992)
+.+..+ +.+..+ ..+.+..+..++.+..+. +...+. .+..
T Consensus 613 l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~---~vs~l~-~v~~---------------------------- 660 (1176)
T KOG1248|consen 613 LKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES---QVSKLF-TVDP---------------------------- 660 (1176)
T ss_pred HHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch---hHHHHH-HhhH----------------------------
Confidence 211111 111111 111222222222211110 001110 0000
Q ss_pred CchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh-ccc-ccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 001945 623 DDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT-KSS-YAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAA 700 (992)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (992)
...+...-..+..+.+.|..+.... +.. ....+..+...+.+-++......|..++.++..|++.+
T Consensus 661 ------------~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~ 728 (1176)
T KOG1248|consen 661 ------------EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL 728 (1176)
T ss_pred ------------HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 0001112235677888888876551 111 22345555666666666677788999999999998874
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH--HHh---CCcccHHHHHHHHHHHHHHHhhh
Q 001945 701 HAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEII--NDY---GYMAVEPYMSRLVDATLLLLREE 775 (992)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~--~~~---g~~~~~~~~~~l~~~l~~~l~~~ 775 (992)
. .....++...++.++=.. .+.+...+..++.++..+. ..+ |..-....++..+..+...+.+.
T Consensus 729 ~----------~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd 797 (1176)
T KOG1248|consen 729 S----------AEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD 797 (1176)
T ss_pred c----------HHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc
Confidence 3 112223333333333222 3445566667777776665 222 21111123344443333332221
Q ss_pred hhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCC-hHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHh
Q 001945 776 STCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPH-FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVAR 854 (992)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~ 854 (992)
. . .+..+-.-.+..+....+.. -.+++..++..+.-++...++ .++..|++.+..++.
T Consensus 798 ~------------------~--~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sr-eI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 798 S------------------T--RVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSR-EIAKAAIGFIKVLVY 856 (1176)
T ss_pred H------------------H--HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHH
Confidence 1 0 11101011233344433443 245777888888888886654 689999999999998
Q ss_pred hcCC-chhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc-chhhHHHHHHHhhhhhh
Q 001945 855 DMGS-PIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE-SALKYYGDILRGLYPLF 916 (992)
Q Consensus 855 ~~~~-~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l 916 (992)
.++. ++.+|++.++|.++....+....+|-.+-.-|-.+++..|. .+.++++.....+.+.|
T Consensus 857 ~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 8875 47789999999999988888999999999999999998875 45556665544444444
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.48 E-value=4.5e-08 Score=106.92 Aligned_cols=650 Identities=15% Similarity=0.151 Sum_probs=335.9
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhH----hHhhhcC-Ch
Q 001945 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY----NSLKKHK-LV 290 (992)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~-~~ 290 (992)
.+.+..+|..|=..+..+-.... +-..+..++.+.+.+-..|..|+-.+..+++..- ..+++.. ..
T Consensus 14 ls~d~~vr~~AE~~l~qle~~~~---------f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 14 LSADQNVRSQAETQLKQLELTEG---------FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred cCCChhHHHHHHHHHhccccchH---------HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 35667777766666655543222 2233344555565567788888877766665421 1111111 11
Q ss_pred HH----HHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhh
Q 001945 291 IP----ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (992)
Q Consensus 291 ~~----il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (992)
.. |.+.+...+-+ +....+.++..++..++..-=.+-||.+++++...+.+.+....++|+.++..+..
T Consensus 85 e~~K~~IRe~Ll~~l~~-------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDD-------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred HHHHHHHHHHHHhhhhc-------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 11 22333333332 23367888888888888665567899999999999999888899999999998887
Q ss_pred cCHHHHHHh-HHHHHHHH---HhhcCCCChhHHHHHHH--HHHH-------hHhhhcHHHHhhhhhHHHHHHHhccc---
Q 001945 367 GCAEWMKEK-LESVLHIV---LGALRDPEQFVRGAASF--ALGQ-------FAEYLQPEIVSHYESVLPCILNALED--- 430 (992)
Q Consensus 367 ~~~~~~~~~-l~~i~~~l---~~~l~d~~~~vr~~a~~--~l~~-------l~~~~~~~~~~~~~~ll~~l~~~l~~--- 430 (992)
.....-... .+-.++.+ +......+...|..++. .... .-+.-.......+.++++..+..+..
T Consensus 158 ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred HHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 543211111 11222222 22222333333333331 1111 11111112223445555555444332
Q ss_pred -C---ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC----------------------CCH------hHHH
Q 001945 431 -E---SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN----------------------SPR------NLQE 478 (992)
Q Consensus 431 -~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----------------------~~~------~v~~ 478 (992)
+ ....+....+++..+.++++..+.||+..+++...+.+.. .++ ..-.
T Consensus 238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i 317 (1005)
T KOG2274|consen 238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI 317 (1005)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence 2 1356788899999999998877666666555444333211 011 1122
Q ss_pred HHHHHHHHHHHHh--hccCcccHHHHHHHHHHHHhc-----------------cChhhhHhHHHHHHHHHHHHHhhchhh
Q 001945 479 TCMSAIGSVAAAA--EQAFIPYAERVLELLKIFMVL-----------------TNDEDLRSRARATELLGLVAESVGRAR 539 (992)
Q Consensus 479 ~a~~~l~~l~~~~--~~~~~~~~~~~~~~l~~~l~~-----------------~~~~~~~~~~~~~~~l~~l~~~~~~~~ 539 (992)
..++.++.++... .+.+..-..+++..+..++.- ..++....|..+...+-.+...+|...
T Consensus 318 ~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 318 QIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG 397 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence 4444444444322 122222222222222211110 001111122223333333333444433
Q ss_pred ccCChHHHHHHHHh-----ccCCC-CchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchh
Q 001945 540 MEPILPPFVEAAIS-----GFGLE-FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDEN 613 (992)
Q Consensus 540 ~~~~~~~i~~~l~~-----~l~~~-~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 613 (992)
..+..+..-..+.. .++.. .|.+.+..+.+..... -+.....++..+...+...+.+
T Consensus 398 i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~--------------- 460 (1005)
T KOG2274|consen 398 INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVY--------------- 460 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhccc---------------
Confidence 33322211111111 11111 1222222222211111 1111111111111111111110
Q ss_pred cccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhccc-CCChhHHHHHHHH
Q 001945 614 INGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS-YFHEDVRYQAVFA 692 (992)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~a~~~ 692 (992)
......-..|+.+++.|+...... .+.+..++...+..+. +..+-+|..|+.+
T Consensus 461 -------------------------~e~P~Ll~Ra~~~i~~fs~~~~~~-~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~ 514 (1005)
T KOG2274|consen 461 -------------------------QESPFLLLRAFLTISKFSSSTVIN-PQLLQHFLNATVNALTMDVPPPVKISAVRA 514 (1005)
T ss_pred -------------------------ccCHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhccCCCCchhHHHHHH
Confidence 001111236788888777664322 2334444444444443 3445677777777
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Q 001945 693 LKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLL 772 (992)
Q Consensus 693 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l 772 (992)
+...+ +++.+.+..+.++..+.....+ ...++..-.++++..+++. .+......-..+.|.+..++
T Consensus 515 ~~~~~------------~~~vl~~~~p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 515 FCGYC------------KVKVLLSLQPMILDGLLQLASK-SSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLF 580 (1005)
T ss_pred HHhcc------------CceeccccchHHHHHHHHHccc-ccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHH
Confidence 66554 2345666777788877776543 3556777778888866653 33322233346666666666
Q ss_pred hhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCC---CccchhhHHHHH
Q 001945 773 REESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR---PLQDRTMVVATL 849 (992)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~r~~al~~l 849 (992)
.... ++..+...+-+++..++.. .....++...++|.++..++... +......|+.+|
T Consensus 581 ~k~s------------------~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvL 641 (1005)
T KOG2274|consen 581 LKYS------------------EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVL 641 (1005)
T ss_pred HHhc------------------CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHH
Confidence 5542 1113444555666666552 33455678889999988876443 335688999999
Q ss_pred HHHHhhcCCchhh-cHhhhHHHHHHhcC-CCChHhHHHHHHHHHHHHhhcCcchhhH-------HHHHHHhhhhhhCCCC
Q 001945 850 AEVARDMGSPIAA-YVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKY-------YGDILRGLYPLFGDSE 920 (992)
Q Consensus 850 ~~~~~~~~~~~~~-~~~~~~~~ll~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------~~~~l~~l~~~l~~~~ 920 (992)
..++++.++.+.+ .+...+|.+.++.- +.|-+.-++|..||..++..+.+++..+ +-.+++.+..++. ++
T Consensus 642 ttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~ 720 (1005)
T KOG2274|consen 642 TTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PE 720 (1005)
T ss_pred HHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-Cc
Confidence 9999998877444 57888999999854 5667789999999999998876654332 2256666666664 44
Q ss_pred CChhhHhhHHHHHHHHHHhCCCCCC--hhhHHHHHHhhCC
Q 001945 921 PDDAVRDNAAGAVARMIMVNPQSIP--LNQVLPVLLKVLP 958 (992)
Q Consensus 921 ~~~~~~~n~~~~l~~l~~~~~~~~~--~~~~l~~~l~~lp 958 (992)
..+.+.-++-..+..++...+..++ +++++.+.++.|-
T Consensus 721 ~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 721 TSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred cchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 4444444555555555555555553 5677777776663
No 45
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.8e-07 Score=98.79 Aligned_cols=705 Identities=13% Similarity=0.179 Sum_probs=372.0
Q ss_pred HHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC--CHHHHHHHHHHHHHhhhh-hhh---
Q 001945 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTET-IGQ--- 151 (992)
Q Consensus 78 ~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~l~~~-~~~--- 151 (992)
.+-+.|.+.+. +++.+|+.+-.++...... +.+.-.+++++.++ +...|.+|...+...++. ..+
T Consensus 6 ~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q-------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~ 76 (960)
T KOG1992|consen 6 TLANYLLQTLS--PDPSVRKPAERALRSLEGQ-------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED 76 (960)
T ss_pred HHHHHHHhcCC--CCCccCchHHHHHHHhccC-------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC
Confidence 33344444443 5688888888877765532 33333445555433 467888888888888763 211
Q ss_pred ---cc-cccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 001945 152 ---TF-RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (992)
Q Consensus 152 ---~~-~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 227 (992)
.+ ...-+.+...+....-+ ....++..-..+++.+..+. |..-+|.+++.+...++.+|..+..+++
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~D--------FP~kWptLl~dL~~~ls~~D~~~~~gVL 147 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRD--------FPDKWPTLLPDLVARLSSGDFNVINGVL 147 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccc--------cchhhHHHHHHHHhhccccchHHHHHHH
Confidence 11 22334455666666665 55667777677777666554 4555677777777777777766665555
Q ss_pred HHHHHHhcCCccch----------------HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh--------HhH
Q 001945 228 EIFDELIESPAPLL----------------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK--------YNS 283 (992)
Q Consensus 228 ~~l~~l~~~~~~~~----------------~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~--------~~~ 283 (992)
..-..+.++....+ ..-+..++..+.......+.+...-...+..+.-+++.. |..
T Consensus 148 ~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 148 VTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 55555554432211 112233444444444433323332222233332333321 222
Q ss_pred hhhcCChHHHHHHHhhhhccCCCC--CCCCCCc----hHHHHHHHHHHHHHHcchh---chHHHHHHHHhhhcCCChhhH
Q 001945 284 LKKHKLVIPILQVMCPLLAESNEA--GEDDDLA----PDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQNASPKYR 354 (992)
Q Consensus 284 ~~~~~~~~~il~~l~~~l~~~~~~--~~d~~~~----~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~r 354 (992)
+.+ .+...++...++++...+. +++++-. .+....+.+...+..+.+. .++.++...-..+.+.....|
T Consensus 228 FEd--nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k 305 (960)
T KOG1992|consen 228 FED--NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK 305 (960)
T ss_pred HHh--hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 222 3455666666666643321 1222222 2223344444444444432 223333332233433333222
Q ss_pred H-----HHHHHHHHHhhcCHHHHHHh--HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHH
Q 001945 355 E-----AAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILN 426 (992)
Q Consensus 355 ~-----~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~ 426 (992)
+ .|+..|..+++... ...+ -+.++..+.....=++-..|. +-.+.+ +..+..+-+
T Consensus 306 yD~Lvs~Al~FLt~V~~r~~--y~~~F~~~~vl~~i~e~VvlpN~~lR~---------------eDeElFED~pleYiRR 368 (960)
T KOG1992|consen 306 YDYLVSKALQFLTSVSRRPH--YAELFEGENVLAQICEKVVLPNLILRE---------------EDEELFEDNPLEYIRR 368 (960)
T ss_pred HHHHHHHHHHHHHHHHhhhh--hHhhhcchHHHHHHHHhhcccccccch---------------hhHHHhccCHHHHHHH
Confidence 2 23334444443210 0000 112222222222222222221 112222 224444555
Q ss_pred hcccCC-hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC---CCHhHHHHHHHHHHHHHHHhhc---------
Q 001945 427 ALEDES-DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQ--------- 493 (992)
Q Consensus 427 ~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~v~~~a~~~l~~l~~~~~~--------- 493 (992)
.+.-.+ ..-|..||..+..+++.+...+.+.+..-++.++.-... .++.-+..++..+.+++...+.
T Consensus 369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn 448 (960)
T KOG1992|consen 369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTN 448 (960)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecc
Confidence 554333 334677899999999999777777777777776665443 2455666677766666654221
Q ss_pred cCc---ccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHH
Q 001945 494 AFI---PYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGF 569 (992)
Q Consensus 494 ~~~---~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~ 569 (992)
.+. .|+ .++.|.|.. ....+.-.+|..++..+...-+.+|+ +++-.+++.+...++.+.+-+..++..+
T Consensus 449 ~lvdv~~Ff~~~ilp~L~s---~~vn~~pilka~aIKy~~~FR~ql~~----~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 449 ELVDVVDFFANQILPDLLS---PNVNEFPILKADAIKYIYTFRNQLGK----EHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred ccccHHHHHHHHhhHHhcc---CccccccchhhcccceeeeecccCCh----HHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 122 232 333333321 11122234555566555544434444 3445666777777888888899999999
Q ss_pred HHHHHHHccc---------CccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecc
Q 001945 570 FSNIAGVLED---------GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTG 640 (992)
Q Consensus 570 ~~~i~~~~~~---------~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (992)
+..+....+. ++.||...++..++..++...+ .+
T Consensus 522 iEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~------~E------------------------------- 564 (960)
T KOG1992|consen 522 IEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK------AE------------------------------- 564 (960)
T ss_pred HHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc------cc-------------------------------
Confidence 9888766653 5677777888888876654311 00
Q ss_pred hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhccc----C-CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHH
Q 001945 641 VLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS----Y-FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAR 715 (992)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 715 (992)
-.-..+++-.+.....+...|+.+.++..+.+.+. . .++.--..-+++++.++.... ..++..+.
T Consensus 565 ----neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~------~~~~~~vs 634 (960)
T KOG1992|consen 565 ----NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC------KANPSAVS 634 (960)
T ss_pred ----cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh------ccCchHHH
Confidence 01122333333334555556666666655544432 2 222223334455555544322 23566677
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH-HHhhhhhhcCCCCCCCCCCccccc
Q 001945 716 EILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL-LLREESTCQQPDNDSDIEDDDDTA 794 (992)
Q Consensus 716 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~ 794 (992)
.+-..++|.+..++.++ -.+....++..++.++...+. ..++.+..+++.++. .+=++ ..
T Consensus 635 ~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r-----~g------------ 695 (960)
T KOG1992|consen 635 SLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKR-----SG------------ 695 (960)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhh-----cC------------
Confidence 77788888877776554 456677788888888887763 445555555554432 11111 10
Q ss_pred chHHHHHHHHhHHHHHHHHhCCChH--HHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCc-hhhcHhhhHHHH
Q 001945 795 HDEVIMDAVSDLLPAFAKSMGPHFA--PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLV 871 (992)
Q Consensus 795 ~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~-~~~~~~~~~~~l 871 (992)
-+-++..++..+.+.-...+. ..+..++..+-+.+.++. .-..++..+..++.+.+.. +.||..++...+
T Consensus 696 ----NipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka---~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~ll 768 (960)
T KOG1992|consen 696 ----NIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKA---NDHHGFYLLNTIIESIPPNELAPYMKQIFGLL 768 (960)
T ss_pred ----CcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcc---cchhHHHHHHHHHhcCCHhhhhHHHHHHHHHH
Confidence 012455677777776544443 344556666666655432 3456888999999888764 678999999999
Q ss_pred HHhcCCCChH--hHHHHHHHHHHHHhhcCc
Q 001945 872 LKELASPDAM--NRRNAAFCVGELCKNGGE 899 (992)
Q Consensus 872 l~~l~~~~~~--vr~~a~~~l~~l~~~~~~ 899 (992)
+.+++++... ++.-..+..-...++++.
T Consensus 769 f~RlqnskT~kf~k~~~vF~~~~~ik~~~~ 798 (960)
T KOG1992|consen 769 FQRLQNSKTEKFVKSFIVFFSLFTIKKGGL 798 (960)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 9999976533 444433333334444444
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.38 E-value=1.2e-11 Score=118.25 Aligned_cols=355 Identities=15% Similarity=0.154 Sum_probs=229.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhh--hhhcccccHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTET--IGQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~--~~~~~~~~~~-~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (992)
-+|.+.+.+.+++-..+..|..-|..+... .|+ +.+.+. .++|.+.+.+......-.+..|.+++.++++......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 347777777777777778887777776543 222 222222 3567788888553666678899999999987654321
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHH--HHHHHHHHhhCCCCChHHHHHHHHHH
Q 001945 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS--IVHFSLEVSSSHNLEPNTRHQAIQII 273 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~--li~~~~~~~~~~~~~~~~r~~a~~~l 273 (992)
.+..-..-+|.+++.+ .+.+.+++..++++|..++..++.. +.++-. .++.++.++.+...+..
T Consensus 151 kvVvd~~AVPlfiqlL----~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~is--------- 216 (526)
T COG5064 151 KVVVDAGAVPLFIQLL----SSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHIS--------- 216 (526)
T ss_pred EEEEeCCchHHHHHHH----cCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHH---------
Confidence 1111123457776644 5677889999999999998765432 222111 12222222211111111
Q ss_pred HHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCC
Q 001945 274 SWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNA 349 (992)
Q Consensus 274 ~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~ 349 (992)
.-+.+...|+.+++... ...+...+|.+.+++.+.
T Consensus 217 -----------------------------------------mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~ 255 (526)
T COG5064 217 -----------------------------------------MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255 (526)
T ss_pred -----------------------------------------HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc
Confidence 12223333333333221 223455677777888889
Q ss_pred ChhhHHHHHHHHHHHhhcCHHHHHHhHHH-HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHh
Q 001945 350 SPKYREAAVTAIGIISEGCAEWMKEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNA 427 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~ 427 (992)
|..+-.-|+|+++.++++..+.+...++. +.+.++..|.+++..|+.-|++.+|.+...-...-+-.+ -..++.+...
T Consensus 256 D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~l 335 (526)
T COG5064 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSL 335 (526)
T ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHH
Confidence 99999999999999999988877766654 567899999999999999999999999876533222222 3567777777
Q ss_pred cccCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh--ccCcccH--HHH
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYA--ERV 502 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~--~~~ 502 (992)
|.++...+|..+||+++++.....+.+...++ .+++.|+.++...+..++.+|..+++......- .+...|+ .-+
T Consensus 336 Ls~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~ 415 (526)
T COG5064 336 LSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGF 415 (526)
T ss_pred hcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccc
Confidence 88888899999999999987655555554444 677888888888899999999999988765432 1333444 225
Q ss_pred HHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 503 LELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
+..|.+++.-.+++-. ..+++++-.+.
T Consensus 416 IkpLc~~L~~~dNkii---ev~LD~~eniL 442 (526)
T COG5064 416 IKPLCDLLDVVDNKII---EVALDAIENIL 442 (526)
T ss_pred hhHHHHHHhccCccch---hhhHHHHHHHH
Confidence 6667777765433322 23566666655
No 47
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.38 E-value=2.4e-09 Score=119.70 Aligned_cols=534 Identities=17% Similarity=0.137 Sum_probs=321.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhC---CCCcHHHHHHHH---hcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHH
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLAK---DPQVVPALVQHL---RTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~~---~p~~~~~l~~il---~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i 79 (992)
...+......+-+....+-..+..+.. .|++...++..+ .......+|+.++-.++.....+ +.+.....
T Consensus 123 ipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~----~~~~~~~~ 198 (759)
T KOG0211|consen 123 IPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL----PKEKLREH 198 (759)
T ss_pred hhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----ChHHHHHH
Confidence 334444444444566666666665543 255544333333 33345567888888877776444 33333233
Q ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 001945 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (992)
Q Consensus 80 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 159 (992)
...++..+....--.-|..+|.+.+..+....+..--.++.+...++.++..+.+|..+..-++.+....+. ......
T Consensus 199 lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~ 276 (759)
T KOG0211|consen 199 LVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSE 276 (759)
T ss_pred HHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhh
Confidence 333444444322223455566777766654432234567888888999999999999999999999888775 233456
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 160 i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
+.+.+.+...| ....||.+|..++.++..+.+... +....+.+.+.+...+..+.++....+....+...-.+
T Consensus 277 v~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~~~------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~ 349 (759)
T KOG0211|consen 277 VLPTLIQLLRD-DQDSVREAAVESLVSLLDLLDDDD------DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP 349 (759)
T ss_pred ccHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc
Confidence 77888888888 788999999999999999986542 22233444444555566677766665555555433222
Q ss_pred chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHH
Q 001945 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (992)
Q Consensus 240 ~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (992)
...-....+.....+++. ..+.|..+..-...++.+.......+-....+++.+.....+... .+|.+.
T Consensus 350 --~~~~~~~~~~~~~l~~~~--~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~-------~vr~a~ 418 (759)
T KOG0211|consen 350 --SATRTQLVPPVSNLLKDE--EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNAL-------HVRSAL 418 (759)
T ss_pred --ccCcccchhhHHHHhcch--hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccc-------hHHHHH
Confidence 111112222223333322 444454433333333332221111111222344444444443322 445554
Q ss_pred HHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC-HHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001945 320 AEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (992)
Q Consensus 320 ~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (992)
+.....+....| ...++.+.|.....+++....+|......+...-... ...+....+..+|.+...-.|.++++|.+
T Consensus 419 a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~a 498 (759)
T KOG0211|consen 419 ASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLA 498 (759)
T ss_pred hccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHH
Confidence 444444444455 5566778888888889999999988886664433322 12333445677888888888889999999
Q ss_pred HHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhH
Q 001945 398 ASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNL 476 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 476 (992)
..+.+-.++...+- +++ +..-+.+...+.|....+|.+|...+..++..++ ..-+...+++.++....++....
T Consensus 499 il~~ip~la~q~~~---~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~ 573 (759)
T KOG0211|consen 499 ILEYIPQLALQLGV---EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLV 573 (759)
T ss_pred HHHHHHHHHHhhhh---HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccch
Confidence 99999888887652 222 2244445556777778899999999999998887 23345566777777766667889
Q ss_pred HHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC
Q 001945 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (992)
Q Consensus 477 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 556 (992)
|...+.++..++..+|..+ +...++|.+..... |....+|-.+...+..+...+.......++.++.+.+.+
T Consensus 574 R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~---D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~--- 645 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVK---DPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS--- 645 (759)
T ss_pred hhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhcc---CCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc---
Confidence 9999999999999888655 34556666666543 333345555666666555444443334444444444333
Q ss_pred CCCchhhHHHHHHHHHHHHH
Q 001945 557 LEFSELREYTHGFFSNIAGV 576 (992)
Q Consensus 557 ~~~~~~r~~~~~~~~~i~~~ 576 (992)
+++.++|-.+..+++.+...
T Consensus 646 d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 646 DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred CcccchhHHHHHHHHHHHHH
Confidence 56677888888888776653
No 48
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1e-06 Score=98.72 Aligned_cols=241 Identities=17% Similarity=0.185 Sum_probs=157.2
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHH
Q 001945 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
++.++..+...+++.+-.+|..|...+|.+....+..+.. +++..++..++- +.+..=..+|.+|+.++..-- -.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-Ll 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD---QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-LL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-cc
Confidence 3455666667788999999999999999999988754443 334444444331 123444589999999887521 11
Q ss_pred HhhhhhHHHHHHHhcccC--------ChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHH-HhcCCCHhHHHHHHHH
Q 001945 414 VSHYESVLPCILNALEDE--------SDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLA-ALENSPRNLQETCMSA 483 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~--------~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~-~l~~~~~~v~~~a~~~ 483 (992)
...++.++|.+++.+.-. ...||.+||...-.|.+... ..+.|++..+...|+- .+-+++-..|..|..+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 234567889998888743 24699999999999999884 5688988888776544 4556778888888877
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhc-cCCCCchh
Q 001945 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG-FGLEFSEL 562 (992)
Q Consensus 484 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~ 562 (992)
+-..+...++. |+--. +++..+.-....|. +|...++..+ ..|..|..++++.++.. +..-+..+
T Consensus 495 lqE~VGR~~n~--p~Gi~-------Lis~~dy~sV~~rs---Ncy~~l~~~i--a~~~~y~~~~f~~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 495 LQENVGRQGNF--PHGIS-------LISTIDYFSVTNRS---NCYLDLCVSI--AEFSGYREPVFNHLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHhccCCCC--CCchh-------hhhhcchhhhhhhh---hHHHHHhHHH--HhhhhHHHHHHHHHHhcccccccHHH
Confidence 76655443321 11111 11111111111122 3444444443 36778888888888764 55556778
Q ss_pred hHHHHHHHHHHHHHcccCcc-CchhhhhHHHH
Q 001945 563 REYTHGFFSNIAGVLEDGFA-QYLPLVVPLAF 593 (992)
Q Consensus 563 r~~~~~~~~~i~~~~~~~~~-~~l~~i~~~l~ 593 (992)
|+.+..++..+....++.+. .++|++++..+
T Consensus 561 relaa~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred HHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 99999999999888777665 45666655543
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.36 E-value=6.6e-09 Score=115.32 Aligned_cols=392 Identities=17% Similarity=0.228 Sum_probs=245.3
Q ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccc-cHHHHH
Q 001945 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQ 161 (992)
Q Consensus 83 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~~~i~ 161 (992)
++..|.. .+...-..+|.++..+.....+....+.+.+.+...+.++++.+|..++..++.+.......... .-..++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 3444443 33333455566666655544443234556666666666666666666666666655443221110 114578
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
+.+..++.+ ++..|...|.+++..++..... ...++ +..+..+...+...+..++..+++++..++...+..
T Consensus 122 ~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~------~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRD-PDLSVAKAAIKALKKLASHPEG------LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh------HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 889999999 9999999999999999986421 12221 222555555555557778899999999999887776
Q ss_pred hHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChH--HHHHHHhhhhccCCCCCCCCCCchHH
Q 001945 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI--PILQVMCPLLAESNEAGEDDDLAPDR 317 (992)
Q Consensus 241 ~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (992)
+..... .+++.++....++ |.-++..+++++..+++. +.... |+. .+++.+...+.+.++|. ......-
T Consensus 195 ~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~-~~g~~---yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l 266 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAET-PHGLQ---YLEQQGIFDKLSNLLQDSEEDP--RLSSLLL 266 (503)
T ss_pred HHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcC-hhHHH---HHHhCCHHHHHHHHHhccccCC--cccchhh
Confidence 654442 3667766666553 778899999999999973 32211 222 36677777776665432 0111121
Q ss_pred -HHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH--HHH----HHhHHHHHHHHHhhc
Q 001945 318 -AAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWM----KEKLESVLHIVLGAL 387 (992)
Q Consensus 318 -~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~----~~~l~~i~~~l~~~l 387 (992)
....+.+.++..-+ ...+|.++..+...+.+.|...+.+|+.++|.++.... ..+ .+.+..++..+....
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 12255566665433 34557888888888899999999999999999986432 122 123456677777777
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcH----HH---Hh-hhh----hHHH-HHHHhcccCChHHHHHHHHHHHHHHHhh-ccc
Q 001945 388 RDPEQFVRGAASFALGQFAEYLQP----EI---VS-HYE----SVLP-CILNALEDESDEVKEKSYYALAAFCEDM-GEE 453 (992)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~----~~---~~-~~~----~ll~-~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~ 453 (992)
......+|..++.+++.+.....+ ++ .+ .+. .-.. .++..++.|-+.+|.++...|..++... +-.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 778888999999999999654332 11 11 111 1112 5667777777999999999999988643 111
Q ss_pred cccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH
Q 001945 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 490 (992)
..--.+.+++.++..-.+.+...++.=..++..++..
T Consensus 427 ~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 427 EICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1122334555555544455666666666666666644
No 50
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.28 E-value=1.6e-09 Score=104.03 Aligned_cols=350 Identities=14% Similarity=0.159 Sum_probs=227.4
Q ss_pred CCChhHHHHHHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCC---CcchHHH
Q 001945 47 AKTPNVRQLAAVLLRKKITGH-WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE---WPDLLPF 122 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~-~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~---~~~ll~~ 122 (992)
+.+-+.+..|..-+|+.+.+. -..+.+-+...+...+++.+.+.........++-++..|++....... =..-+|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 445666777777788887653 344666677788889999996556777888899999999986543211 1456899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH--HHHHHHHHhcCC-CCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001945 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA--DMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (992)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (992)
+.+++.+++.++++.+..+|+.++...+. ...++- ..++.+...+.+ ..+..+-..+.+.|+++++..+++.++..
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 99999999999999999999999865432 112211 123444444444 13346667889999999998877666666
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHH-HHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001945 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (992)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (992)
.+..+| .+.+++...++++...|++++.-+...........+.. +...+++++.++ +..
T Consensus 241 isqalp----iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~-------------- 300 (526)
T COG5064 241 ISQALP----ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAK-------------- 300 (526)
T ss_pred HHHHHH----HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--ccc--------------
Confidence 555544 45556667899999999999987765433222221110 001111111111 111
Q ss_pred hhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHH
Q 001945 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAV 358 (992)
Q Consensus 279 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al 358 (992)
...+.+..+-...+..++ ... ..-.+ -+++++...+.++.-..|+-||
T Consensus 301 ----------iqtPalR~vGNIVTG~D~-----QTq-----------viI~~------G~L~a~~~lLs~~ke~irKEaC 348 (526)
T COG5064 301 ----------IQTPALRSVGNIVTGSDD-----QTQ-----------VIINC------GALKAFRSLLSSPKENIRKEAC 348 (526)
T ss_pred ----------ccCHHHHhhcCeeecCcc-----cee-----------hheec------ccHHHHHHHhcChhhhhhhhhh
Confidence 111122111111111111 000 00001 1344444557888789999999
Q ss_pred HHHHHHhhcCHHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhh--cHHHHhhh--hhHHHHHHHhcccCCh
Q 001945 359 TAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYL--QPEIVSHY--ESVLPCILNALEDESD 433 (992)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~--~~ll~~l~~~l~~~~~ 433 (992)
|.++.+..|..+.+...++ .++|.++..|..-+..+|..|||+++...... .|++..|+ +..+..|...|.-.+.
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 9999999998888777664 58899999999889999999999999987653 24555655 5678888888876666
Q ss_pred HHHHHHHHHHHHHHHh
Q 001945 434 EVKEKSYYALAAFCED 449 (992)
Q Consensus 434 ~v~~~a~~~l~~l~~~ 449 (992)
++-..++.++.++++.
T Consensus 429 kiiev~LD~~eniLk~ 444 (526)
T COG5064 429 KIIEVALDAIENILKV 444 (526)
T ss_pred cchhhhHHHHHHHHhh
Confidence 6777778888888764
No 51
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.3e-08 Score=103.96 Aligned_cols=436 Identities=11% Similarity=0.143 Sum_probs=269.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCc----HHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQV----VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~----~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 78 (992)
-+.+++.+.-+.|.+++|=..-+|-++.. +|+. +.++-.-| .++|+-+|..|...|... --.....
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsI--------Rvp~IaP 142 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSI--------RVPMIAP 142 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhc--------chhhHHH
Confidence 34566666667777777777777766653 4553 22222222 356677777775444322 1112223
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH
Q 001945 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (992)
Q Consensus 79 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 158 (992)
|.-.-++-...|+.+.||+.+|++|-.+.+.+. .+.+.+...+..++.+.++.+...|+.++..+|-.--+.+.+++.
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyr 220 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYR 220 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHH
Confidence 333334444468999999999999999998763 366789999999999999999999999999988665555555555
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc-CChhh--------------HHH---------HHhhHHHHHHHHHHH
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFT-NDGAE--------------VVK---------FREFIPSILNVSRQC 214 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~-~~~~~--------------~~~---------~~~~~~~ll~~l~~~ 214 (992)
.+..++ .+ -+.--+...+..|..+++.. .++.. ... ...=+..+++-...+
T Consensus 221 klC~ll----~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpL 295 (968)
T KOG1060|consen 221 KLCRLL----PD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPL 295 (968)
T ss_pred HHHhhc----cc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHH
Confidence 444333 33 22222333444454444321 11100 000 011123466666677
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHH
Q 001945 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPIL 294 (992)
Q Consensus 215 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il 294 (992)
+.+.++.+...+++.+..++... ....++..++..+.. ..+++...+..+..++...|..+.. ++..
T Consensus 296 l~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P--~lKs-- 362 (968)
T KOG1060|consen 296 LQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEP--HLKS-- 362 (968)
T ss_pred HhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhh--hhhc--
Confidence 78888999999998888877532 223333444433332 4567777777777777655554332 2111
Q ss_pred HHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHH
Q 001945 295 QVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKE 374 (992)
Q Consensus 295 ~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~ 374 (992)
...... .+......-+..++....+.-+..+++-+..++++.+...-.+++.++|..+.....
T Consensus 363 -----Ffv~ss--------Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s---- 425 (968)
T KOG1060|consen 363 -----FFVRSS--------DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS---- 425 (968)
T ss_pred -----eEeecC--------CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----
Confidence 111111 122333333444555445555677888888889998877667788888888775432
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhccc
Q 001945 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEE 453 (992)
Q Consensus 375 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~ 453 (992)
.-+..+..++..+...+..|-..+...|..+...-+....+ ++..+.+.++.- .+.-|...+|.++..++..
T Consensus 426 v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~----ii~~La~lldti~vp~ARA~IiWLige~~e~v--- 498 (968)
T KOG1060|consen 426 VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE----ILFQLARLLDTILVPAARAGIIWLIGEYCEIV--- 498 (968)
T ss_pred hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----HHHHHHHHhhhhhhhhhhceeeeeehhhhhhc---
Confidence 23456777777788778889999999999988876544333 444444444332 2456777788888887653
Q ss_pred cccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
....++++..+.+.+.+....+|.+++.....+.....+
T Consensus 499 -pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~ 537 (968)
T KOG1060|consen 499 -PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID 537 (968)
T ss_pred -chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh
Confidence 346778899999999999999999999887777554433
No 52
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=2.1e-09 Score=128.59 Aligned_cols=273 Identities=19% Similarity=0.183 Sum_probs=191.2
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i 160 (992)
..|++.|. ++++.||..++..++.+.. ++.++.|...+.++++.+|..++..|..+.+..+.
T Consensus 624 ~~L~~~L~-D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLA-DPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45666666 6899999999999987542 44788889999999999999999998887543321
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
.+.+...|.+ +++.||..|+.+|..+-.. + ... +...+.++++.++..++..|..+-. .
T Consensus 686 ~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~--~----------~~~----l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 686 APALRDHLGS-PDPVVRAAALDVLRALRAG--D----------AAL----FAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHhhccC--C----------HHH----HHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 1345567787 8999999999988775311 1 011 2345678889999999888886521 1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHH
Q 001945 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (992)
Q Consensus 241 ~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (992)
+.+...+.++ +..+|..+...|..+....+ ..++.+..++.+. ++.+|..+.
T Consensus 745 ---------~~l~~~l~D~--~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~-------d~~VR~aA~ 796 (897)
T PRK13800 745 ---------ESVAGAATDE--NREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDP-------DPLVRAAAL 796 (897)
T ss_pred ---------HHHHHHhcCC--CHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCC-------CHHHHHHHH
Confidence 1122333333 78999998888876653211 1133344444332 246788887
Q ss_pred HHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001945 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (992)
Q Consensus 321 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (992)
..|..+.. . +.+.+.+...+++++|.+|.+|+.+|+.+... ..++.+...++|+++.||..|.+
T Consensus 797 ~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 797 AALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAAD----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhcccc----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 77765421 1 12334456678899999999999999876532 44688888999999999999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 001945 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
+|+.+. .. +...+.|...+.|+++.||..|..+|..
T Consensus 861 aL~~~~--~~-------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GD-------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CC-------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999861 11 2356777788999999999999998863
No 53
>PRK09687 putative lyase; Provisional
Probab=99.22 E-value=2.2e-09 Score=108.39 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=174.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcC
Q 001945 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHK 288 (992)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 288 (992)
+.+...+.+++..++..+...|..+-. +.++..+...+.++ ++.+|..+...|..+.....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~------- 86 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK--NPIERDIGADILSQLGMAKR------- 86 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCcc-------
Confidence 334455567888999999888876643 12333334444444 78999999999888753110
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC
Q 001945 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
-....++.+..++.+ |.++.+|..+..+|+.+...- ....+.+++.+...+.+++|.+|.++..+|+.+...
T Consensus 87 ~~~~a~~~L~~l~~~------D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~- 158 (280)
T PRK09687 87 CQDNVFNILNNLALE------DKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE- 158 (280)
T ss_pred chHHHHHHHHHHHhc------CCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-
Confidence 012344555544332 233578888888887764221 112355666677778899999999999999876532
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
..++.++..++|+++.||..|..+||.+.... +.+.+.|...+.|+++.||..|..+|+.+-.
T Consensus 159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 56888999999999999999999999983221 3477888999999999999999999987421
Q ss_pred hhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHH
Q 001945 449 DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528 (992)
Q Consensus 449 ~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 528 (992)
+..++.|++.+++++ ++..+++++|.+.. +..+|.|.+++....|+ .++.++++.+
T Consensus 222 ----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~--~v~~~a~~a~ 277 (280)
T PRK09687 222 ----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDN--EIITKAIDKL 277 (280)
T ss_pred ----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCCh--hHHHHHHHHH
Confidence 356777788887755 67778888887654 35678888888644333 4444566554
Q ss_pred H
Q 001945 529 G 529 (992)
Q Consensus 529 ~ 529 (992)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.20 E-value=8.8e-08 Score=106.46 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=203.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHh
Q 001945 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE 202 (992)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 202 (992)
++.++++.+.+....+..+|..+.+.... ....+.+.+.+..+|.+ +++.||..+++.+.+++...........-
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-- 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVD-- 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcC--
Confidence 77778777777777777888888765432 22367888999999999 99999999999998887654211111111
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhH
Q 001945 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (992)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (992)
+.++..+..++.+++.++...|..+|..++..... +...++ .++..+...+... ++.+|.++++++..+++.++
T Consensus 118 --~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 118 --NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred --ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCH
Confidence 23444455567788899999999999999976432 222211 1244444555443 67889999999999987766
Q ss_pred hHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-------hhchHHHHHHHHhhhcCC-Chh-
Q 001945 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-------KHVFPPVFEFASVSCQNA-SPK- 352 (992)
Q Consensus 282 ~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~~~~~~~l~~~l~~~-~~~- 352 (992)
...... .-..+++.++..+.+ +|.-++..+.+.+..++..-. ..+++.+...+...-.++ ...
T Consensus 193 ~~~~~~-~~sgll~~ll~eL~~-------dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 193 EAAEAV-VNSGLLDLLLKELDS-------DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred HHHHHH-HhccHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 543321 001255555554443 233567788888888887322 233444444444433333 111
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH--H----HhhhhhHHHHHHH
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE--I----VSHYESVLPCILN 426 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~----~~~~~~ll~~l~~ 426 (992)
.--+.+..++.++...+..+....+.++..++..+.+.++..+..|+.++|.++...... + .+.+..++..+..
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD 344 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH
Confidence 112344566667776556666667888888888889999999999999999998764321 1 1233455666666
Q ss_pred hcccCChHHHHHHHHHHHHHHHhhc
Q 001945 427 ALEDESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (992)
........+|.++..++..++....
T Consensus 345 ~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 345 AIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHHhcCC
Confidence 6667777899999999999986543
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=5.8e-09 Score=124.92 Aligned_cols=275 Identities=20% Similarity=0.224 Sum_probs=190.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHH
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (992)
-++.|.+.+.++++.+|..|+..|+.+- -+..++.|...|.| +++.||..|+.+|..+....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGD-GAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCch----
Confidence 3567778888899999999998888763 13456777788888 89999999999988775543211
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001945 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (992)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (992)
+ .+...+.++++.++..++..|..+-...+ . .++..+.++ ++.+|..++..|..+-.
T Consensus 687 ------~----~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~----~l~~~L~D~--d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 687 ------P----ALRDHLGSPDPVVRAAALDVLRALRAGDA-------A----LFAAALGDP--DHRVRIEAVRALVSVDD 743 (897)
T ss_pred ------H----HHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H----HHHHHhcCC--CHHHHHHHHHHHhcccC
Confidence 2 22234456788888888888877542111 1 122334444 78899888877765421
Q ss_pred hhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHH
Q 001945 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAV 358 (992)
Q Consensus 279 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al 358 (992)
.+ .+...+.+ ++..+|..+...|..+...-. ...+.+...++++++.+|.+|+
T Consensus 744 -----------~~----~l~~~l~D-------~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 744 -----------VE----SVAGAATD-------ENREVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAAAL 796 (897)
T ss_pred -----------cH----HHHHHhcC-------CCHHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHHHH
Confidence 01 12223322 334788888887766543221 1245555678899999999999
Q ss_pred HHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHH
Q 001945 359 TAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK 438 (992)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~ 438 (992)
.+|+.+... +.+.+.+...+.|+++.||..|.++|+.+.. +..++.|...+.|+++.||..
T Consensus 797 ~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 797 AALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHH
Confidence 999888653 1233557778899999999999999987642 235588888999999999999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 439 a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
|..+|..+ .--+...+.|...+++.+..||..|..+|..
T Consensus 858 A~~aL~~~---------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 858 AVLALTRW---------PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcc---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999885 1123456677788889999999999988763
No 56
>PRK09687 putative lyase; Provisional
Probab=99.18 E-value=9e-09 Score=104.01 Aligned_cols=254 Identities=15% Similarity=0.115 Sum_probs=174.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001945 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (992)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (992)
++.+...+.+++..+|..+...|..+-. +.+++.+..++++ +++.+|..|+.+|+.+-.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc------
Confidence 4566777788888999999988886632 4566777777888 8999999999999986542211
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 001945 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (992)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (992)
....+|.+... .+.++++.++..++..|..+....... .+.+++.+.....++ +..+|..+...|..+..
T Consensus 88 ~~~a~~~L~~l---~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 QDNVFNILNNL---ALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK--STNVRFAVAFALSVIND- 157 (280)
T ss_pred hHHHHHHHHHH---HhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC--CHHHHHHHHHHHhccCC-
Confidence 11223333332 245678889999999998875433322 122333333334444 77899888777743321
Q ss_pred hHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHH
Q 001945 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (992)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~ 359 (992)
+..++.++..+.+. ++.+|..|..+|+.+. . --+...+.+...+.+.+|.+|..|+.
T Consensus 158 -----------~~ai~~L~~~L~d~-------~~~VR~~A~~aLg~~~--~---~~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 158 -----------EAAIPLLINLLKDP-------NGDVRNWAAFALNSNK--Y---DNPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred -----------HHHHHHHHHHhcCC-------CHHHHHHHHHHHhcCC--C---CCHHHHHHHHHHhcCCChHHHHHHHH
Confidence 23455666666543 3468888888887761 1 12345566667789999999999999
Q ss_pred HHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-cCChHHHHH
Q 001945 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEK 438 (992)
Q Consensus 360 ~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~ 438 (992)
+|+.+... ..+|.+++.+.+++ +|..++.+||.+... ..+|.|...+. ++++.|+..
T Consensus 215 aLg~~~~~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKDK----------RVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCCh----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHH
Confidence 99986543 66888888888866 677788888887753 37788888886 778899988
Q ss_pred HHHHHHH
Q 001945 439 SYYALAA 445 (992)
Q Consensus 439 a~~~l~~ 445 (992)
+.+++..
T Consensus 273 a~~a~~~ 279 (280)
T PRK09687 273 AIDKLKR 279 (280)
T ss_pred HHHHHhc
Confidence 8887753
No 57
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.15 E-value=5.2e-10 Score=90.95 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (992)
.|++++.+++.++.+.+..+.++++.|++.++.++.|++++||+.||.+|..+++..++.+.+++..+++.+.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 001945 433 DEVKEKSYYALAAFC 447 (992)
Q Consensus 433 ~~v~~~a~~~l~~l~ 447 (992)
++||..| ..|.+++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999876 5555544
No 58
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.1e-06 Score=94.80 Aligned_cols=464 Identities=12% Similarity=0.089 Sum_probs=254.2
Q ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH-H
Q 001945 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM-Q 161 (992)
Q Consensus 83 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i-~ 161 (992)
|.+.|.+..+...+.+.-.+|+.|++.. .-.+++|.+.....+.+.+++......|-..++.-++. .-+ +
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL-----ALLSI 110 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL-----ALLSI 110 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc-----eeeeH
Confidence 4455555567777777777888888753 45678888888888877777666555554444443321 111 4
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch
Q 001945 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL 241 (992)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 241 (992)
..+++.|.| +++.+|..|+++|.++- ...+.|.++-++.++..+..+-+|..|..++-.+....+..-
T Consensus 111 ntfQk~L~D-pN~LiRasALRvlSsIR-----------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKD-PNQLIRASALRVLSSIR-----------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcC-CcHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 567788888 88888888888776531 123456777777777777777778777777777766555433
Q ss_pred HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH--------hhHhHhhhcCCh---HH--HHHHHhhhhc----cC
Q 001945 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK--------YKYNSLKKHKLV---IP--ILQVMCPLLA----ES 304 (992)
Q Consensus 242 ~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~--------~~~~~~~~~~~~---~~--il~~l~~~l~----~~ 304 (992)
. .+..++..+ +.+. ++.+-..|.-.+..++- ++.+.++-.+-+ .+ ++.++..+-. +.
T Consensus 179 ~-qL~e~I~~L---LaD~--splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 D-QLEEVIKKL---LADR--SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred H-HHHHHHHHH---hcCC--CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 3 333333333 2222 44444444333333321 111111110000 01 1222222211 11
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHH
Q 001945 305 NEAGEDDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381 (992)
Q Consensus 305 ~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~ 381 (992)
.-.+++-+.+.+.+-...... ....+ ..-...+++-....+.+.+..+-.+++.++-.++... ....|+.
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~k 325 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYN-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAK 325 (968)
T ss_pred cccccccccCccccccccccc-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHH
Confidence 000000000100000000000 00001 1122345566666777888888788777777776542 3345667
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH------------------------------hhhhhHHHHHHHhcccC
Q 001945 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIV------------------------------SHYESVLPCILNALEDE 431 (992)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------------------------~~~~~ll~~l~~~l~~~ 431 (992)
.++..|. .++.+|+..+..+..++..-+.-+. .....+++.+...+.+.
T Consensus 326 aLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 326 ALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS 404 (968)
T ss_pred HHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC
Confidence 7777665 4566788888877777654322111 12344566666666666
Q ss_pred ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHh
Q 001945 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (992)
Q Consensus 432 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 511 (992)
+.++...++.+++.++... ...-+..+..|+.++.+.+..|-.++...|-.+...-+..-..+..+++..+ .
T Consensus 405 d~~faa~aV~AiGrCA~~~----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll----d 476 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRI----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL----D 476 (968)
T ss_pred chhHHHHHHHHHHHHHHhh----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh----h
Confidence 6667778888888776543 3456677888888888888888888888888888765533222333333222 1
Q ss_pred ccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHH
Q 001945 512 LTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPL 591 (992)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~ 591 (992)
... --..|+..+-.+|..+.. +...++.++..+.+.+.++.+.++-.++..-..+-..-..+ ...+...
T Consensus 477 ti~--vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Y 545 (968)
T KOG1060|consen 477 TIL--VPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQY 545 (968)
T ss_pred hhh--hhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHH
Confidence 111 112233345555555532 33455678888888888888888866655444332211122 3445555
Q ss_pred HHhhccCCC
Q 001945 592 AFSSCNLDD 600 (992)
Q Consensus 592 l~~~~~~~~ 600 (992)
.++..+++.
T Consensus 546 v~~L~~yD~ 554 (968)
T KOG1060|consen 546 VFELARYDL 554 (968)
T ss_pred HHHHhccCC
Confidence 666555554
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.10 E-value=2e-07 Score=101.52 Aligned_cols=378 Identities=15% Similarity=0.165 Sum_probs=238.1
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh--
Q 001945 121 PFLFQFSQSEQE---EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-- 195 (992)
Q Consensus 121 ~~l~~~l~~~~~---~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 195 (992)
|.++..+.+.+. ......+.++..++.... .+......++..+....+.+.+...-...+.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 455666655443 456677777777764322 23334445556665555544566777788888888876553322
Q ss_pred -hHHHHHh--hHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHH-----HhhCCCC-C
Q 001945 196 -EVVKFRE--FIPSILNVSRQCLASGE---EDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLE-----VSSSHNL-E 262 (992)
Q Consensus 196 -~~~~~~~--~~~~ll~~l~~~l~~~~---~~~~~~~~~~l~~l~~~~~~-~~~~~l~~li~~~~~-----~~~~~~~-~ 262 (992)
....+.. ++|.++........... +.+...+...+..++...+. .-...+..++..... .+..... .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2222333 67777776655443322 33444444444444443332 112223333333320 0000000 0
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHH
Q 001945 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEF 341 (992)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~ 341 (992)
.+.....+.++..+...-++...- +....++..++.+.....+ ...|..+..++..+...++ .+.+..++..
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~~------~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSED------EFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 111222333333433322222221 1344566666666655443 3678889999999999876 4455666665
Q ss_pred HHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH--------
Q 001945 342 ASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-------- 412 (992)
Q Consensus 342 l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------- 412 (992)
+.... ...+...|..++..+..+.++.--...+....++..++..+.| +.+...+.++++-+....+.-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 55544 4556677888888888888763211123445677778888877 668888999998887764221
Q ss_pred -----HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 413 -----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 413 -----~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
-++.+..++|.+++.....+...+.....+|..+++..|.. +.++++.+++.+++.+..++..++..+++++..
T Consensus 312 vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 312 VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 14567889999999999887778999999999999999866 569999999999999999999999999999999
Q ss_pred HHHHhhccCcccHHHHHHHHHH
Q 001945 487 VAAAAEQAFIPYAERVLELLKI 508 (992)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~l~~ 508 (992)
+....++.+.+|.+.++|.+.+
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9998888888899988887754
No 60
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.2e-05 Score=82.41 Aligned_cols=385 Identities=11% Similarity=0.094 Sum_probs=218.9
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC-----C-HhHHHHHHHHHHHHHHHhhc--cCcccHH-HHH
Q 001945 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-----P-RNLQETCMSAIGSVAAAAEQ--AFIPYAE-RVL 503 (992)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~-~~v~~~a~~~l~~l~~~~~~--~~~~~~~-~~~ 503 (992)
..+|--|=..+..+.+..+.-+.|++-.++..-.++..-+ + --.+..+..+.|..+....+ +|..++. .++
T Consensus 411 y~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ll 490 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALL 490 (978)
T ss_pred eccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhC
Confidence 4456556666777777777777777777776555554211 1 12455666777766665554 3344442 233
Q ss_pred HHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCC-CchhhHHHHHHHHHHHHHcc---c
Q 001945 504 ELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLE---D 579 (992)
Q Consensus 504 ~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~r~~~~~~~~~i~~~~~---~ 579 (992)
|-+. ...+....+|.+..-.+|.... .+.-...-+-+...+.+.+++. +-.+|-.+..++..+++-.. +
T Consensus 491 pEl~----~~~~~~RiiRRRVa~ilg~Wvs---vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 491 PELA----NDHGNSRIIRRRVAWILGQWVS---VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHhh----hcccchhHHHHHHHHHHhhhhh---eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 4333 2222334457677667666552 2111112223445555556654 56688888888888877654 6
Q ss_pred CccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh
Q 001945 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (992)
Q Consensus 580 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~ 659 (992)
.|.||+|.+...+++.+..- +..+.|...+.+++.+....
T Consensus 564 sFlp~lenlf~~lfkll~~~----------------------------------------~e~Dtk~~VL~~ls~lI~r~ 603 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAV----------------------------------------EECDTKTSVLNLLSTLIERV 603 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHH----------------------------------------hhhhhHHHHHHHHHHHHHHH
Confidence 79999999988888776421 01135777889999999999
Q ss_pred cccccchHHHHHHHHHhccc--CCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhC--ChH
Q 001945 660 KSSYAPFLEESLKILVRHAS--YFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED--DDK 735 (992)
Q Consensus 660 ~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 735 (992)
++.+.||..+++..+..+=+ ..++-.|.+-..+|-.++.+.+. .+. ...+.++|.+.....-+ +..
T Consensus 604 ~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~-------qS~---~~~~fL~pVIel~~D~~sP~hv 673 (978)
T KOG1993|consen 604 SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA-------QSF---EFYPFLYPVIELSTDPSSPEHV 673 (978)
T ss_pred HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc-------CCc---cchHHHHHHHHHhcCCCCCcee
Confidence 99999998888776655532 23445677777777777777652 122 23444555443332111 111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhC
Q 001945 736 DVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG 815 (992)
Q Consensus 736 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 815 (992)
-..+..++.....+... ..+.+.+-.++|-+...+....+ .+.++...+.+..-.-+
T Consensus 674 ~L~EDgmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste---------------------~L~t~l~Ii~sYilLd~ 730 (978)
T KOG1993|consen 674 YLLEDGMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTE---------------------NLPTVLMIISSYILLDN 730 (978)
T ss_pred ehhhhHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHhhcc
Confidence 22334445555444432 33566777788888777765431 12245566666555555
Q ss_pred CChHH-HHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchh-hcHhhhHHHHHHhc--CCCChHhHHHHHHHHH
Q 001945 816 PHFAP-IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIA-AYVDRVMPLVLKEL--ASPDAMNRRNAAFCVG 891 (992)
Q Consensus 816 ~~~~~-~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~-~~~~~~~~~ll~~l--~~~~~~vr~~a~~~l~ 891 (992)
..|.. |...++..+.+.+.+-+. +.-...+.+..-+++.-+ -.. .+.+.++|.+...+ .++.|-+...-..-+|
T Consensus 731 ~~fl~~y~~~i~k~~~~~l~dvr~-egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 731 TVFLNDYAFGIFKKLNDLLDDVRN-EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 55544 666777777777765433 223333444433343321 122 24555666665544 3555666666556666
Q ss_pred HHHhhcCc
Q 001945 892 ELCKNGGE 899 (992)
Q Consensus 892 ~l~~~~~~ 899 (992)
++.-..++
T Consensus 809 Ri~l~n~~ 816 (978)
T KOG1993|consen 809 RISLRNPS 816 (978)
T ss_pred HHHhcChH
Confidence 66555555
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=0.00011 Score=85.74 Aligned_cols=434 Identities=14% Similarity=0.170 Sum_probs=231.7
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
++...++..+..++..+..+...+|..|.+||..+++.-+.-+ --+.+.......+.++...||+.|++.+|+.+.+.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc
Confidence 4566778888999999999999999999999999987654322 23456667777788889999999999999999988
Q ss_pred hccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHH
Q 001945 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (992)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~ 571 (992)
++...+||+++...+ .|....+|.+++..+..++.... .|... ..+...++...+++...+.+-+...|.
T Consensus 887 ~e~~~qyY~~i~erI-------lDtgvsVRKRvIKIlrdic~e~p--df~~i-~~~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 887 PELIFQYYDQIIERI-------LDTGVSVRKRVIKILRDICEETP--DFSKI-VDMCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHHHHHHHHHHhhc-------CCCchhHHHHHHHHHHHHHHhCC--ChhhH-HHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 888888888766544 45667788999999999885542 23322 233334444455554446555554444
Q ss_pred HHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHH
Q 001945 572 NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651 (992)
Q Consensus 572 ~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~ 651 (992)
.+= |.|- .+..+. .+ ..+. +..
T Consensus 957 klW------F~p~----------------------~~~~d~--------------------------~~--~~~k--I~~ 978 (1692)
T KOG1020|consen 957 KLW------FTPV----------------------PEVNDQ--------------------------PA--KARK--ISL 978 (1692)
T ss_pred HHh------ccCC----------------------Cccccc--------------------------HH--HHHh--hHH
Confidence 331 1100 000000 00 0000 001
Q ss_pred HHHHHHHhcccccchHHHHHHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHH
Q 001945 652 LGLFALHTKSSYAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTM 729 (992)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 729 (992)
....+.+.-.....|.++++..+++.-.. ....+...+...+...+.. ...-+...+.+.-
T Consensus 979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L-----------------~~~cl~~~i~ev~ 1041 (1692)
T KOG1020|consen 979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNL-----------------LTHCLVEKISEVE 1041 (1692)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHH-----------------HHHHHHHHHHhhh
Confidence 11111111133455677777666653211 1111122111111111111 1111111221111
Q ss_pred ----hhCChHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHH
Q 001945 730 ----TEDDDKDVVAQACTSIVEIINDYGYMAVE-PYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVS 804 (992)
Q Consensus 730 ----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (992)
.++.+..-....+..+... ....+..+. .++..+ .+-|.... . +-.+..++..++
T Consensus 1042 ~~~~~~~~~~~~~~~~lstL~~F-skirP~Llt~khv~tL----~PYL~s~~--~-------------t~~~~~fl~~vi 1101 (1692)
T KOG1020|consen 1042 SDDMNEEESEVRLLAYLSTLFVF-SKIRPQLLTKKHVITL----QPYLTSKA--S-------------TIEEAQFLYYVI 1101 (1692)
T ss_pred hHhhhcccchhHHHHHHHHHHHH-HhcCchhccHHHHHHh----hhHHhccc--c-------------chHHHHHHHHHH
Confidence 1111222222333444322 333333332 344333 33333321 1 224445666666
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcC---C---C
Q 001945 805 DLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA---S---P 878 (992)
Q Consensus 805 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~---~---~ 878 (992)
..+..+......---.++..+=..+++.+-.... .....++.|++.++...... ...+..++..+++.+. . +
T Consensus 1102 ~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~-a~V~~~vsCl~sl~~k~~~~-~~~v~~cf~~~~k~le~~k~s~~e 1179 (1692)
T KOG1020|consen 1102 QILECVLPLVANPSESFLASLEEDLLKRIVKMGM-ATVVEAVSCLGSLATKRTDG-AKVVKACFSCYLKLLEVIKSSNNE 1179 (1692)
T ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666555544344556666667776654433 45778999999988753221 2234444444444432 1 2
Q ss_pred C-----hHhHHHHHHHHHHHHhhcC--------cchhhHHHHHHHhhhhhhCC--CCCChhhHhhHHHHHHHHHHhCCCC
Q 001945 879 D-----AMNRRNAAFCVGELCKNGG--------ESALKYYGDILRGLYPLFGD--SEPDDAVRDNAAGAVARMIMVNPQS 943 (992)
Q Consensus 879 ~-----~~vr~~a~~~l~~l~~~~~--------~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~n~~~~l~~l~~~~~~~ 943 (992)
+ .-.-...++++|.++++.. ..+.+....+......++.. +..+..+|..|+.++|+++..+|..
T Consensus 1180 n~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l 1259 (1692)
T KOG1020|consen 1180 NADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSL 1259 (1692)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchh
Confidence 2 1234557899999998542 12222222333333333321 3345789999999999999999987
Q ss_pred CChhhHHHHHH
Q 001945 944 IPLNQVLPVLL 954 (992)
Q Consensus 944 ~~~~~~l~~~l 954 (992)
+.-.++...+.
T Consensus 1260 ~~~~~v~nly~ 1270 (1692)
T KOG1020|consen 1260 FTSREVLNLYD 1270 (1692)
T ss_pred hhhHHHHHHHH
Confidence 65344444333
No 62
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.06 E-value=2.8e-05 Score=88.71 Aligned_cols=143 Identities=20% Similarity=0.167 Sum_probs=112.5
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhh---------cCCHhHHHHHHHHHHHHHcccCCCCCCc
Q 001945 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL---------EHSAPVRRASANVVSIIAKYAVPAGEWP 117 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~---------~~~~~vr~~~~~~l~~i~~~~~~~~~~~ 117 (992)
++.-++|+-|++.++.....+...++-+..+.+.-.++..+.- ..-..||...+++++...++..+ ....
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~-s~~~ 166 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE-SLIK 166 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-HhhH
Confidence 4567899999999999999988887776666555555544431 12358999999999999998766 3677
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
+.+..+.+++..++|..+++++..+........+.+....+.+++.+..+|.+ ++.+||..|...+.......
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~d-s~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLED-SDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHhhhhhHHH
Confidence 78888999998889999999999888876644444445667788999999999 99999999999887776554
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.4e-08 Score=98.68 Aligned_cols=380 Identities=15% Similarity=0.115 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001945 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (992)
Q Consensus 129 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 208 (992)
+++.+.+..+...+..+.+..- .....+....+...+++ .++.+..+|..++++++-..+..........+=+.+.
T Consensus 58 SDnlnlqrsaalafAeitek~v---r~Vsres~epvl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKGV---RRVSRESNEPVLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHHHHHH---HHhhhhhhhHHHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 3344444455555555544322 22234455667777888 8999999999999998876643211111122222333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHh--Hhhh
Q 001945 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKK 286 (992)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~ 286 (992)
+ ++ .+..+++..+..|+..++.......+-.-..-+..+..+.+.+ +..++..+...+..+.....+ .+..
T Consensus 134 q----mm-td~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLaksk--dirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 134 Q----MM-TDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSK--DIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred H----hc-CCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 2 33 3344566677788888876543322211111223333444443 788899998888776543221 1111
Q ss_pred cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhhHHHHHHHH
Q 001945 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAI 361 (992)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l 361 (992)
..-++++..++...+. .++..+..+++.++-... .+.-|.+++.+.....+++.+++.-|-.++
T Consensus 207 ----aG~lpvLVsll~s~d~-------dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 207 ----AGGLPVLVSLLKSGDL-------DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred ----cCCchhhhhhhccCCh-------hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 1234556666665543 345555555555443221 334477888888999999999999999999
Q ss_pred HHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC-hHHHHHHH
Q 001945 362 GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVKEKSY 440 (992)
Q Consensus 362 ~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~v~~~a~ 440 (992)
+.++....-...-.-..-+|.+++.++++.-..-.+...|+..++-.-.++..-.-..++..++..|...+ ..++-+|.
T Consensus 276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 99987643221111123478888888888777777778888777665433222122456677888887553 56999999
Q ss_pred HHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHH--HHHHHHHHHhccChhh
Q 001945 441 YALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER--VLELLKIFMVLTNDED 517 (992)
Q Consensus 441 ~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~ 517 (992)
+.|.++..........+.+ .-++.+..++.+..-++|+..-.|++.++.. +.+..++.. ++|.|.... .+..
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t---~s~s 430 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWT---GSES 430 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeeccc---Cccc
Confidence 9999999877655444333 5678888888899999999999999988753 223333221 344443333 3344
Q ss_pred hHhHHHHHHHHHHHHHhh
Q 001945 518 LRSRARATELLGLVAESV 535 (992)
Q Consensus 518 ~~~~~~~~~~l~~l~~~~ 535 (992)
..+++.+-.++..++.-+
T Consensus 431 ~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDV 448 (550)
T ss_pred hhhcccHHHHHHhhhhhh
Confidence 456666666666665433
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.5e-06 Score=94.26 Aligned_cols=416 Identities=13% Similarity=0.119 Sum_probs=244.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHH
Q 001945 121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (992)
Q Consensus 121 ~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 200 (992)
+.+.+=+++++.-+...||..++.++. .+-.+++.|.+.+.+++ +++.||+.|+.|...++...++
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s------~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~------- 175 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS------PEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPD------- 175 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC------HHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCch-------
Confidence 334444556666678888988888864 23456788889999999 9999999999999999887643
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHHhhCCC---------CChHHHHH
Q 001945 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---PLLGDSVKSIVHFSLEVSSSHN---------LEPNTRHQ 268 (992)
Q Consensus 201 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~li~~~~~~~~~~~---------~~~~~r~~ 268 (992)
+...++......+.+.+.-+....+..+.++++..+ .+|+..++.++..+=++..... .++-.+..
T Consensus 176 --l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 176 --LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred --HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 233445555556666777777777777888877743 4566666666666655543321 13445555
Q ss_pred HHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHH-HHHHHHHHHHHcc-hhchHHHHHHHHhhh
Q 001945 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA-AAEVIDTMALNLA-KHVFPPVFEFASVSC 346 (992)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~~~~l~~~l 346 (992)
.+.+|.-+.+..+... ..+-..+-+...+.+.. -+...+ -.+|+..+....+ ..+....+..+-+++
T Consensus 254 iLrlLriLGq~d~daS------d~M~DiLaqvatntdss-----kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 254 ILRLLRILGQNDADAS------DLMNDILAQVATNTDSS-----KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred HHHHHHHhcCCCccHH------HHHHHHHHHHHhccccc-----ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 5655555544322211 11112222222222210 011111 2344444444444 334445567777788
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHH
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN 426 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~ 426 (992)
.+.+-..|+.|+.+|......-+.....| -..|+.||+|++..+|..|+..+-.+...- ....++..++.
T Consensus 323 ~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn~~------Nv~~mv~eLl~ 392 (866)
T KOG1062|consen 323 LNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVNES------NVRVMVKELLE 392 (866)
T ss_pred cCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhccc------cHHHHHHHHHH
Confidence 88999999999999999998877666665 456788999999999999999887776552 34457777888
Q ss_pred hcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH-HHHHHH
Q 001945 427 ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA-ERVLEL 505 (992)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~ 505 (992)
.|...++.++..+..-+..+++.+.+.-.=|++.++.. +...-..|+..+...+-.++.......-.|. ..++..
T Consensus 393 fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~V----l~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a 468 (866)
T KOG1062|consen 393 FLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKV----LKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA 468 (866)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH----HHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88877888999999999999888755433344444443 3333334455555544444443322222221 122222
Q ss_pred HHHH-HhccChhhhHhHHHHHHHHHHHHHhh----chhhc-cCChHHHHHHHHhccCC--CCchhhHHHHHHHHHHHHHc
Q 001945 506 LKIF-MVLTNDEDLRSRARATELLGLVAESV----GRARM-EPILPPFVEAAISGFGL--EFSELREYTHGFFSNIAGVL 577 (992)
Q Consensus 506 l~~~-l~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~-~~~~~~i~~~l~~~l~~--~~~~~r~~~~~~~~~i~~~~ 577 (992)
+... +...+.+ .+..-+..|+|..+.-+ +.+.. ...-..++..+.+.+.. .+...+.+++.++..+...+
T Consensus 469 ~~~~~~~~is~e--~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 469 LSEDTLLDISQE--PLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred Hhhhhhhhhhhh--hHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 2111 0001111 12224667777665322 11111 11113455554443332 24667888888887777655
Q ss_pred cc
Q 001945 578 ED 579 (992)
Q Consensus 578 ~~ 579 (992)
+.
T Consensus 547 ~s 548 (866)
T KOG1062|consen 547 HS 548 (866)
T ss_pred cc
Confidence 53
No 65
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.02 E-value=5.8e-07 Score=97.96 Aligned_cols=365 Identities=15% Similarity=0.148 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHh---hhcCChHH-HHHH
Q 001945 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL---KKHKLVIP-ILQV 296 (992)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~~~~-il~~ 296 (992)
.....+++++..+... +..+....+.++..+........ +.+.-..++..+..+.+...... ....|... +++.
T Consensus 17 ~~~~~~L~~l~~ls~~-~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~ 94 (415)
T PF12460_consen 17 SNYERILEALAALSTS-PQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPR 94 (415)
T ss_pred hHHHHHHHHHHHHHCC-hhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHH
Confidence 3455666666666643 44455555566665555544333 44555566666666655432222 11112222 6666
Q ss_pred HhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc----------CCC---hhhHHHHHHHHHH
Q 001945 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ----------NAS---PKYREAAVTAIGI 363 (992)
Q Consensus 297 l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~----------~~~---~~~r~~al~~l~~ 363 (992)
++.........+.+.++..-......+..+.+.++.+.-..++..+...+. +.. +..+.. +..+..
T Consensus 95 l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 173 (415)
T PF12460_consen 95 LFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRL-VILFSA 173 (415)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccH-HHHHHH
Confidence 666655443322222334555667777777777773333333333222221 111 122222 222333
Q ss_pred HhhcCHHHH-HHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhc-ccCChHHHHHHH
Q 001945 364 ISEGCAEWM-KEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSY 440 (992)
Q Consensus 364 i~~~~~~~~-~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l-~~~~~~v~~~a~ 440 (992)
+..+.+... .+....++..++.... ..++..|..++++++.+...+++. +.+..++..+...+ ....+..+..+.
T Consensus 174 il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PF12460_consen 174 ILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQAL 251 (415)
T ss_pred HHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHH
Confidence 333332222 1344556666666543 456899999999999998876432 24455555555555 333345555666
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc--------cCc-----ccHHHHHHHHH
Q 001945 441 YALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ--------AFI-----PYAERVLELLK 507 (992)
Q Consensus 441 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--------~~~-----~~~~~~~~~l~ 507 (992)
..+.-+.+..--.-.|....+++.++.++.+ +.+...+..+++.+..-.++ .+. .+|..++|.+.
T Consensus 252 ~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~ 329 (415)
T PF12460_consen 252 EILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLL 329 (415)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHH
Confidence 6665555555333346777888888888877 56677777777777654221 122 35566778777
Q ss_pred HHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhh
Q 001945 508 IFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPL 587 (992)
Q Consensus 508 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~ 587 (992)
+.....++. .|..-+.+++.+...+.+..+.++++.+++.+++++..++++++.+++.++..+...-++.+.+|+..
T Consensus 330 ~~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~s 406 (415)
T PF12460_consen 330 EGFKEADDE---IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSS 406 (415)
T ss_pred HHHhhcChh---hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 777655433 45566788899998998888999999999999999998899999999999999999998899999999
Q ss_pred hhHHHHhh
Q 001945 588 VVPLAFSS 595 (992)
Q Consensus 588 i~~~l~~~ 595 (992)
++|.+++.
T Consensus 407 LI~~LL~l 414 (415)
T PF12460_consen 407 LIPRLLKL 414 (415)
T ss_pred HHHHHHhc
Confidence 99999863
No 66
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=6.7e-06 Score=95.52 Aligned_cols=224 Identities=21% Similarity=0.291 Sum_probs=161.9
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 4 SLELLLIQFLM--PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 4 ~l~~ll~~~~s--~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
++...+....+ ++++.|.+|.+.+.+++..|+.+.....++..++++.+|.+|..+|-+.++.+|..+|.+.+..+|+
T Consensus 11 ~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~ 90 (1041)
T KOG2020|consen 11 ELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKN 90 (1041)
T ss_pred HHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHH
Confidence 44445555544 5889999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHhhc--------CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-
Q 001945 82 SLIESITLE--------HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT- 152 (992)
Q Consensus 82 ~ll~~l~~~--------~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~- 152 (992)
..+...... +...++++++.++-.+++.++| +.||+++|.+.+..+.+ ...++.++.++.-+.+.+-..
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~s-~~~~el~m~Il~lLsEdvf~~s 168 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKTS-ETVCELSMIILLLLSEEVFDFS 168 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhcC-cccchHHHHHHHHHHHHHhccc
Confidence 888877632 2456888899999999999999 49999999999988744 356677777777766654311
Q ss_pred ---------------ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHH-hhHHHHHHHHHHHhh
Q 001945 153 ---------------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR-EFIPSILNVSRQCLA 216 (992)
Q Consensus 153 ---------------~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~ll~~l~~~l~ 216 (992)
+...+..+..+........++. +-.+++..+..+..|.+-.. .+. +.+..++. ..+
T Consensus 169 s~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~~~---I~~tn~l~~~l~---~~l- 240 (1041)
T KOG2020|consen 169 SSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPLGY---IFETNILELLLN---KFL- 240 (1041)
T ss_pred chHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccHHH---HHHhhhHHHHHH---hcc-
Confidence 1112223333444433332334 77788888888888875211 111 11222222 121
Q ss_pred cCCHHHHHHHHHHHHHHhcCCc
Q 001945 217 SGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
+.+..+..+++||.+++....
T Consensus 241 -n~~~~r~~al~CL~ei~s~~~ 261 (1041)
T KOG2020|consen 241 -NAPELRNNALSCLTELLSRKR 261 (1041)
T ss_pred -chHHHHHHHHHHHHHHHhccc
Confidence 346788899999999987754
No 67
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.99 E-value=1.4e-07 Score=98.87 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCC---ChHHHHHHHHHHHHHHHhhHh--HhhhcCChHHHHH
Q 001945 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL---EPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQ 295 (992)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~---~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~ 295 (992)
+++..+++.+..++++....++++++.+++..++++..-.. .+..-..++.+|.++++.... .+...+.+..++.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 45667888888888888888899999999888887654322 244556788898887754221 1122234555554
Q ss_pred -HHhhhhccCCCC----------------CCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc------CCChh
Q 001945 296 -VMCPLLAESNEA----------------GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ------NASPK 352 (992)
Q Consensus 296 -~l~~~l~~~~~~----------------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~------~~~~~ 352 (992)
+++|.|.-.++| |..|..+.|.+|.+.+..+++..++.+.+.+...+...++ +.+|+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 456766543221 1234568899999999999999988888877777777664 57899
Q ss_pred hHHHHHHHHHHHhhcCH-------H-----HHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001945 353 YREAAVTAIGIISEGCA-------E-----WMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~-------~-----~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (992)
.+.+|+..++.++.... . .+...+ ..++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+..
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~ 346 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHH
Confidence 99999999999986431 1 122222 22334443 22257899999999999999988864 56778
Q ss_pred HHHHHHHhcccCChHHHHHHHHHH
Q 001945 420 VLPCILNALEDESDEVKEKSYYAL 443 (992)
Q Consensus 420 ll~~l~~~l~~~~~~v~~~a~~~l 443 (992)
++|.+...|.+++..|+..|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999999998998887764
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=9.5e-06 Score=86.91 Aligned_cols=268 Identities=13% Similarity=0.151 Sum_probs=175.6
Q ss_pred HHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh
Q 001945 136 EVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL 215 (992)
Q Consensus 136 ~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l 215 (992)
..|+..|+.+... ....++.+-+..+|++ +-+.+|+.|+-.+..++..+++. ++..+|.+.+ -+
T Consensus 127 giAL~GLS~fvTp------dLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~E----kL 190 (877)
T KOG1059|consen 127 GLALSGLSCIVTP------DLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVE----KL 190 (877)
T ss_pred hheecccccccCc------hhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHH----hc
Confidence 3455555555421 1234566677788898 99999999999999877665432 4555566655 45
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHH
Q 001945 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (992)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (992)
.++|+.+...|+..+++++...|+-+-+.-|.++..|.... ...+-...+.++..+.-..|+.-++ .++++.+
T Consensus 191 eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSs-----NNWmLIKiiKLF~aLtplEPRLgKK--Lieplt~ 263 (877)
T KOG1059|consen 191 EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSS-----NNWVLIKLLKLFAALTPLEPRLGKK--LIEPITE 263 (877)
T ss_pred cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccC-----CCeehHHHHHHHhhccccCchhhhh--hhhHHHH
Confidence 67899999999999999999999877666666666655321 3345555667777776666654333 4445444
Q ss_pred HHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHH-----cc--hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC
Q 001945 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN-----LA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 296 ~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~-----~~--~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
.+- .. ..-....+|+..+... .+ ......+++.+..++.+.|...|+-++.+++.++..-
T Consensus 264 li~----sT---------~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 264 LME----ST---------VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred HHH----hh---------HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 331 10 1111122333332221 21 3345667788888899999999999999999999988
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCCh-HHHHHHHHHHHHHH
Q 001945 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFC 447 (992)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~v~~~a~~~l~~l~ 447 (992)
+..+..+ -..++++|.|.++.+|..|+..+..+... ..+..++..|+..+...+. ..|...+.-+..+|
T Consensus 331 p~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 331 PKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred HHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 8777666 45778899999999999999998877654 2334455556555544433 45555555555554
Q ss_pred Hh
Q 001945 448 ED 449 (992)
Q Consensus 448 ~~ 449 (992)
..
T Consensus 401 S~ 402 (877)
T KOG1059|consen 401 SQ 402 (877)
T ss_pred hh
Confidence 43
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.92 E-value=5.5e-08 Score=97.29 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.4
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhcC-----HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH
Q 001945 340 EFASVSCQNASPKYREAAVTAIGIISEGC-----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (992)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (992)
..+.....+.+|..|..|+..+..+..+. .+.+...+..++..+...+.|....|...|+.+++.++..++..+.
T Consensus 10 ~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 10 AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE 89 (228)
T ss_dssp TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 33333457789999999999999998765 2344455666778889999999999999999999999999998888
Q ss_pred hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh-
Q 001945 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSAIGSVAAAAE- 492 (992)
Q Consensus 415 ~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~- 492 (992)
++.+.++|.++..+.+.+..++..|..+|..+++.++ +.+.+ ...+.....+.++.+|..++.++..+....+
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999998765 22344 6777778888999999999999999988777
Q ss_pred --ccCcc--cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch
Q 001945 493 --QAFIP--YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (992)
Q Consensus 493 --~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (992)
..+.. +++.+.+.+...+.. .+..+|..+-.++..+...+|.
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHhhhcccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCH
Confidence 34433 346778888777754 4556788888888888766654
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00019 Score=78.66 Aligned_cols=502 Identities=14% Similarity=0.148 Sum_probs=273.4
Q ss_pred CHHHHHHHHHHH--HHHhCCCC-cH-HHHHHHHhcCC--ChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhh
Q 001945 16 DNDARRQAEDQI--KRLAKDPQ-VV-PALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL 89 (992)
Q Consensus 16 d~~~r~~A~~~l--~~~~~~p~-~~-~~l~~il~~~~--~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~ 89 (992)
|+.-|++--..| -++.-.|. |- ..++.++.++. +..+-.+|+.+|-.. +.+..-.+-+.+-+-|.+
T Consensus 47 d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE--------~qdvllLltNslknDL~s 118 (866)
T KOG1062|consen 47 DPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDE--------RQDLLLLLTNSLKNDLNS 118 (866)
T ss_pred CHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhcc--------chHHHHHHHHHHHhhccC
Confidence 333444433333 34444453 32 24555555443 334456666665332 344445555566566664
Q ss_pred cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcC
Q 001945 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (992)
Q Consensus 90 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 169 (992)
++..+.-.+--+++.++..+ --+++.|.+.+++++.++.+|.-|..|...++...|+. ++.+++...+.|.
T Consensus 119 -~nq~vVglAL~alg~i~s~E----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 119 -SNQYVVGLALCALGNICSPE----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHFVIAFRKLLC 189 (866)
T ss_pred -CCeeehHHHHHHhhccCCHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHhhHHHHHHHh
Confidence 56666655555666665432 56889999999999999999999999999998777754 3455677778888
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHhcCCc
Q 001945 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-----------EEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-----------~~~~~~~~~~~l~~l~~~~~ 238 (992)
+ .+.-|-.+++..+..++...+ .....|+.++|.++..+.+....+ +|=.....++.|.-+.+..+
T Consensus 190 e-k~hGVL~~~l~l~~e~c~~~~--~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 190 E-KHHGVLIAGLHLITELCKISP--DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred h-cCCceeeeHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 8 888888888888888887754 345668889999999888776532 23334444554444444332
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCChHHHH-HHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHH
Q 001945 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRH-QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (992)
Q Consensus 239 ~~~~~~l~~li~~~~~~~~~~~~~~~~r~-~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~ 317 (992)
..-+ .+ -..+-+++.+.+.+..+-. .-+++..++....++ .++..--++.+-+.|...+. +.|.
T Consensus 267 daSd-~M---~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~----~~LrvlainiLgkFL~n~d~-------NirY 331 (866)
T KOG1062|consen 267 DASD-LM---NDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN----SGLRVLAINILGKFLLNRDN-------NIRY 331 (866)
T ss_pred cHHH-HH---HHHHHHHHhcccccccchhHHHHHHHHHHHhccCC----chHHHHHHHHHHHHhcCCcc-------ceee
Confidence 2111 01 1111122222211111000 011111111111110 00111112222222222221 3444
Q ss_pred HHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001945 318 AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (992)
Q Consensus 318 ~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (992)
.|...|.++...-+. ....--..+.+.++++|...|.-|+.....+... .++..++.-++..|...++..|..
T Consensus 332 vaLn~L~r~V~~d~~-avqrHr~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPT-AVQRHRSTILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred eehhhHHhhhcCCcH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence 444444433322221 2222233456778999999999999888888776 456677777777777668888888
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHH--hcCCCH
Q 001945 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAA--LENSPR 474 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~--l~~~~~ 474 (992)
+..-+..+++.+.|+-.=|++ .+++.+...-.-|+..+...+-.++.+.......|.. .++..+... +....+
T Consensus 405 ~as~I~~laEkfaP~k~W~id----tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e 480 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHID----TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQE 480 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHH----HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhh
Confidence 888888888888764222233 2333333333345566666666666655333333221 222222221 112345
Q ss_pred hHHHHHHHHHHHHHHHh--h---ccCccc-HHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHH
Q 001945 475 NLQETCMSAIGSVAAAA--E---QAFIPY-AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFV 548 (992)
Q Consensus 475 ~v~~~a~~~l~~l~~~~--~---~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~ 548 (992)
.+...+.+|||..+.-. + +....+ -..++..+.+++...... ...|+.++.++..+...++.. .+.+++++
T Consensus 481 ~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~--~~ri~~lI 557 (866)
T KOG1062|consen 481 PLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS--SERIKQLI 557 (866)
T ss_pred hHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc--HHHHHHHH
Confidence 56777888888776422 1 222222 356888888888765433 456777877777776544321 22233333
Q ss_pred HHHHhccCCCCchhhHHHHHH
Q 001945 549 EAAISGFGLEFSELREYTHGF 569 (992)
Q Consensus 549 ~~l~~~l~~~~~~~r~~~~~~ 569 (992)
. +-..+-+-+++..+.+.
T Consensus 558 ~---~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 558 S---SYKSSLDTELQQRAVEY 575 (866)
T ss_pred H---HhcccccHHHHHHHHHH
Confidence 2 22223356677666553
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.7e-06 Score=92.62 Aligned_cols=440 Identities=17% Similarity=0.146 Sum_probs=240.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
+..++.++...|-+.+|-...++..+.. +|+-.....+.+.+ ++++.+|..|...+... . -+...+.+.
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l---~----v~~i~ey~~ 123 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL---R----VDKITEYLC 123 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE---e----ehHHHHHHH
Confidence 3445555555677778888888876654 67654444444433 45788888886444322 1 234667788
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-ccccHHH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHFAD 159 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~ 159 (992)
..+.+++. +.++.+|+.++.+++.+.........-..+++.+..++.++++.+...|+..+..+.+.-++. .......
T Consensus 124 ~Pl~~~l~-d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~ 202 (734)
T KOG1061|consen 124 DPLLKCLK-DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQ 202 (734)
T ss_pred HHHHHhcc-CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHH
Confidence 88888888 589999999999999988765333345678999999999999999999999999998876532 1222233
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 160 i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
+..-+...+.....| -+...+++ +..+.+++. .. . ..+++.+...++..+..+...+...+..++...+.
T Consensus 203 ~~~~lL~al~ec~EW-~qi~IL~~---l~~y~p~d~-~e-a----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 203 LINKLLEALNECTEW-GQIFILDC---LAEYVPKDS-RE-A----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred HHHHHHHHHHHhhhh-hHHHHHHH---HHhcCCCCc-hh-H----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 444444444431222 23333333 344443221 11 1 12334343444444555555555555555544333
Q ss_pred chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhc------C-----C-----------------hH
Q 001945 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH------K-----L-----------------VI 291 (992)
Q Consensus 240 ~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~------~-----~-----------------~~ 291 (992)
+-...+..+-+-++.+++. .++....++.-+.-+....|+.++.. + | +.
T Consensus 273 ~~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~ 349 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA 349 (734)
T ss_pred HHHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence 2222333333323222222 22444445444444444444322110 0 1 11
Q ss_pred HHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHH
Q 001945 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW 371 (992)
Q Consensus 292 ~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 371 (992)
+++.-+...-.+ -|-...+.+..+++.++....+. ..++..+.+.++-.--.+...++..+..+...++..
T Consensus 350 qvl~El~eYate-------vD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 350 QVLAELKEYATE-------VDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHHhhhh-------hCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 111111111111 12234555667777777666543 333443333333211112222333333333333321
Q ss_pred HHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 372 MKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 372 ~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
.+.+++.+...+.. .+|..|.+-.|.+|++++.+++ ...++..+++.+.|....||.+-..+...++-..
T Consensus 421 ----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 421 ----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred ----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 23455555555543 5788999999999999999854 3458888999999998888887776666655443
Q ss_pred ccccccchHHHHHHHHHH-hcC-CCHhHHHHHHHHHHHH
Q 001945 451 GEEILPFLDPLMGKLLAA-LEN-SPRNLQETCMSAIGSV 487 (992)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~-l~~-~~~~v~~~a~~~l~~l 487 (992)
+. -.+.+++.++.. .++ .++++|..++--+..+
T Consensus 492 p~----~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 492 PT----ETQELLQGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred Cc----cHHHHHHHHHhhhhccccChhhhhhHHHHHHHh
Confidence 33 223344443333 333 3568888877655443
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.87 E-value=6.2e-08 Score=96.94 Aligned_cols=188 Identities=16% Similarity=0.194 Sum_probs=132.8
Q ss_pred CCCCchHHHHHHHHHHHHHHc-chhchHHHH-------HHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHH
Q 001945 310 DDDLAPDRAAAEVIDTMALNL-AKHVFPPVF-------EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-------~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~ 381 (992)
+.+|+.|..+...+..+.... +....+.++ ..+...+.+....+...|+.+++.++...+..+.++.+.++|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 567999999999998887766 222222222 344455666667788899999999999988889999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhH-HHHHHHhcccCChHHHHHHHHHHHHHHHhhc---ccccc-
Q 001945 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV-LPCILNALEDESDEVKEKSYYALAAFCEDMG---EEILP- 456 (992)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l-l~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---~~~~~- 456 (992)
.++..+.|++..+|.+|..+|..+++..+ +...+ ++.+.....+.++.+|..++.++..++...+ ..+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999999999999999999999875 12234 7778888999999999999999999998887 44443
Q ss_pred -chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHH
Q 001945 457 -FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERV 502 (992)
Q Consensus 457 -~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 502 (992)
.++.+.+.+...+.++++++|..|-.++..+....|+.-...+..+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 3588999999999999999999999999999887776544444433
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.86 E-value=8.1e-05 Score=77.74 Aligned_cols=256 Identities=13% Similarity=0.151 Sum_probs=128.6
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc-chhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC
Q 001945 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
..++.+.+-.|+.+..+ .+...++..+..++... +.+.+.+.+..+...+++.....|.+|+..+.+++-..
T Consensus 262 ~~q~rpfL~~wls~k~e-------mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 262 LLQLRPFLNSWLSDKFE-------MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHhcCcch-------hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 33444555555554322 45555666666666554 67788888888999999999999999999999998754
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
|..+.. .=+.+-..++|.+. ..+.+++..+.+.-..+-...+-..+|.++..+.|.-..+. ..++.+++-
T Consensus 335 P~kv~v----cN~evEsLIsd~Nr---~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~---ida~rsLsl 404 (898)
T COG5240 335 PQKVSV----CNKEVESLISDENR---TISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIA---IDALRSLSL 404 (898)
T ss_pred Cceeee----cChhHHHHhhcccc---cchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEe---HHHHHHHHh
Confidence 332110 00111222334442 23334444444433333333344455555555554422221 122222221
Q ss_pred hhccccc----------------cchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh-----------------hccC
Q 001945 449 DMGEEIL----------------PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA-----------------EQAF 495 (992)
Q Consensus 449 ~~~~~~~----------------~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-----------------~~~~ 495 (992)
.++..-. .|-..+++.+...+. .+++.++.|++.++..+.-+ +..-
T Consensus 405 ~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~ 483 (898)
T COG5240 405 LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK 483 (898)
T ss_pred hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC
Confidence 1111111 122223333333322 23445555555554444322 1111
Q ss_pred c--ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHH-HHHHHHhccCCCCchhhHHHHHHHHH
Q 001945 496 I--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP-FVEAAISGFGLEFSELREYTHGFFSN 572 (992)
Q Consensus 496 ~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~r~~~~~~~~~ 572 (992)
. .|...+...+ ++ +...+|..|+.|++.++-.... +..++ +...+..++++.+.++|+.+.-++..
T Consensus 484 ~P~~yvrhIyNR~--iL-----EN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 484 TPGKYVRHIYNRL--IL-----ENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred CcchHHHHHHHHH--HH-----hhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 1 1222222111 01 2234678888888877644422 33333 44555668888889999988776665
Q ss_pred HH
Q 001945 573 IA 574 (992)
Q Consensus 573 i~ 574 (992)
|-
T Consensus 553 ~~ 554 (898)
T COG5240 553 MR 554 (898)
T ss_pred hh
Confidence 54
No 74
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.82 E-value=0.00055 Score=76.24 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=159.3
Q ss_pred chhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhh--ccCCCC-hHHHHH
Q 001945 640 GVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIF--QSHNEG-PAKARE 716 (992)
Q Consensus 640 ~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~-~~~~~~ 716 (992)
+..+.+..|+..+....+.+-..-.|-.-.+...++..++. +++-..+..++.-+..-..... .+..+. +-.-+.
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 34456677888887776665444444455555556665553 3334445555544432211100 000111 223466
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccch
Q 001945 717 ILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHD 796 (992)
Q Consensus 717 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 796 (992)
++..++|.+++.+... ........+.++..++...+...+.+.++.++|.+++.|.-..
T Consensus 864 fF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D-------------------- 922 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD-------------------- 922 (1030)
T ss_pred HHHhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc--------------------
Confidence 8889999999887633 3455667788999999888766677888888888887765321
Q ss_pred HHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCC--ccchhhHHHHHHHHHhhcCCc-hhhcHhhhHHHHHH
Q 001945 797 EVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP--LQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLK 873 (992)
Q Consensus 797 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~r~~al~~l~~~~~~~~~~-~~~~~~~~~~~ll~ 873 (992)
-.+.-...++|..+.+..+.-...+...++|.++..-.+.++ ..+|..|+.+|+.+.+..+.. ..+|.+.++..+.+
T Consensus 923 ~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 923 VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIK 1002 (1030)
T ss_pred cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhh
Confidence 112224667888888888888889999999999987655553 468999999999999977654 77899999999999
Q ss_pred hcCCCChHhHHHHHHHHHHHH
Q 001945 874 ELASPDAMNRRNAAFCVGELC 894 (992)
Q Consensus 874 ~l~~~~~~vr~~a~~~l~~l~ 894 (992)
.|.|+..-||..|..+=+.-.
T Consensus 1003 ~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 1003 ILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred ccCcHHHHHHHHHHHHhhhhh
Confidence 999999999999987755433
No 75
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.80 E-value=0.00066 Score=75.64 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=100.8
Q ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCC---hHh
Q 001945 807 LPAFAKSMG-PHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD---AMN 882 (992)
Q Consensus 807 l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~v 882 (992)
++.+.+..+ +...|.++.++|.+++.++-++. .+|..++.++..++...+.-...|+.+++|.++..=.+.+ ..|
T Consensus 891 LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~-~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 891 LSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDV-IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHHHhcCCHHhhccchhhHHHHHHHhcCCCcc-chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence 344444333 36678899999999999987765 5799999999999988888888899999999999877666 569
Q ss_pred HHHHHHHHHHHHhhcCc-chhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHH
Q 001945 883 RRNAAFCVGELCKNGGE-SALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVA 934 (992)
Q Consensus 883 r~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~ 934 (992)
|..|..|++.+.+..|. ...+|-+.+++++.+.+.++ ..-+|..|+.+=+
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHHHHHHHhh
Confidence 99999999999996654 56789999999999999764 3667777776643
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4.7e-07 Score=88.40 Aligned_cols=372 Identities=13% Similarity=0.094 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-ccccHHHHHHHHHHhcCCCCChH
Q 001945 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHFADMQALLLKCLQDETSNR 175 (992)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~~ 175 (992)
+.++.+.+.+...... ..-.+....++-++++.++..+..+-..++.++-..+.. +.-.+..+-+++.++.++ ...
T Consensus 65 rsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~ve 141 (550)
T KOG4224|consen 65 RSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--GVE 141 (550)
T ss_pred hHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--CcE
Confidence 3444444444432221 122344555666778888888888888888776554432 222233334456666665 567
Q ss_pred HHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH--HHHHHHHH
Q 001945 176 VRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV--KSIVHFSL 253 (992)
Q Consensus 176 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~li~~~~ 253 (992)
||..+..|+.+++.+.+..........+.| +.++-+..+..++..+..+|..+...... +..+ ..-+++++
T Consensus 142 vqcnaVgCitnLaT~d~nk~kiA~sGaL~p-----ltrLakskdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLV 214 (550)
T KOG4224|consen 142 VQCNAVGCITNLATFDSNKVKIARSGALEP-----LTRLAKSKDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLV 214 (550)
T ss_pred EEeeehhhhhhhhccccchhhhhhccchhh-----hHhhcccchhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhh
Confidence 899999999999988543322222112222 22333445666777777777666432211 1111 11245555
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhhH--hHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc
Q 001945 254 EVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (992)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (992)
..+... +.+++..+...++.++-... +.+.. --+.+++.+.++|.+.++ .+.-.|..++..++..-.
T Consensus 215 sll~s~--d~dvqyycttaisnIaVd~~~Rk~Laq--aep~lv~~Lv~Lmd~~s~-------kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 215 SLLKSG--DLDVQYYCTTAISNIAVDRRARKILAQ--AEPKLVPALVDLMDDGSD-------KVKCQAGLALRNLASDTE 283 (550)
T ss_pred hhhccC--ChhHHHHHHHHhhhhhhhHHHHHHHHh--cccchHHHHHHHHhCCCh-------HHHHHHHHHHhhhcccch
Confidence 555555 77889999888887764322 11111 224577788888866554 556667777777765332
Q ss_pred --hhch-HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHh
Q 001945 332 --KHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 332 --~~~~-~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~ 407 (992)
.++. .--+|.+.+.++++......+...++..++-.......-.-...+..++..|. ..+..++..|..+|..++-
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 1111 22355666677888888888888888766644211100000134555666666 4566799999999988876
Q ss_pred hhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHHHH
Q 001945 408 YLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAI 484 (992)
Q Consensus 408 ~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l 484 (992)
.......... ...+|.+...+.|..-.||.....++..+.-+-. ...++ ..+++.|++.+.+...+++.++..++
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--cHHHHhhcCCcceeecccCccchhhcccHHHHH
Confidence 5433333333 5678999999999888888877777766653321 11111 14667777788888899999999999
Q ss_pred HHHHHHh
Q 001945 485 GSVAAAA 491 (992)
Q Consensus 485 ~~l~~~~ 491 (992)
+.+....
T Consensus 442 ~Nlss~v 448 (550)
T KOG4224|consen 442 INLSSDV 448 (550)
T ss_pred Hhhhhhh
Confidence 9887654
No 77
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.79 E-value=6.7e-08 Score=78.70 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC
Q 001945 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (992)
.|..++.+|...+..++..+.++++.++|.++.++.|++++||..||.+|.++++.....+.+|++++++.|.++..+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 48899999999999998888999999999999999999999999999999999999998889999999999999999999
Q ss_pred HhHHHHH
Q 001945 474 RNLQETC 480 (992)
Q Consensus 474 ~~v~~~a 480 (992)
+.||..|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9999876
No 78
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.78 E-value=0.0012 Score=77.72 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHH
Q 001945 319 AAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (992)
Q Consensus 319 a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (992)
+......++.+.+ ..-+...+..+...+..+....|--|+.|++.+++.-+..+. .+.+-..+...+.|.+..||.+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHH
Confidence 3333444454444 445667777777788888899999999999999998654332 3467778888999999999999
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHH
Q 001945 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQ 477 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~ 477 (992)
|...+|++.-..++.+.+| ...+...+.|+.-.||.++.+.+..++...++. +-...+...++....+....++
T Consensus 875 aldLvGrfvl~~~e~~~qy----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPELIFQY----YDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred HHHHHhhhhhccHHHHHHH----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHH
Confidence 9999999998875444444 455667788898999999999999999887652 3344555666666666666688
Q ss_pred HHHHHHHHHHHH
Q 001945 478 ETCMSAIGSVAA 489 (992)
Q Consensus 478 ~~a~~~l~~l~~ 489 (992)
.-+.+.+-.+-.
T Consensus 949 kLv~etf~klWF 960 (1692)
T KOG1020|consen 949 KLVRETFLKLWF 960 (1692)
T ss_pred HHHHHHHHHHhc
Confidence 777777766543
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00054 Score=74.07 Aligned_cols=293 Identities=13% Similarity=0.101 Sum_probs=186.5
Q ss_pred HHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHH
Q 001945 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRI 178 (992)
Q Consensus 99 ~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~ 178 (992)
+...++.+...+ --.++-+.++.++++..+-+|..|..++..++..+++.+.+. ++-+..-|.+ +++.|..
T Consensus 129 AL~GLS~fvTpd----LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~----FprL~EkLeD-pDp~V~S 199 (877)
T KOG1059|consen 129 ALSGLSCIVTPD----LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC----FPRLVEKLED-PDPSVVS 199 (877)
T ss_pred eecccccccCch----hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh----HHHHHHhccC-CCchHHH
Confidence 334444444433 335688899999999999999999999999998888776555 4556677898 9999999
Q ss_pred HHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhC
Q 001945 179 AALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS 258 (992)
Q Consensus 179 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~ 258 (992)
+|...++.+++..+.+ +-.+-|.+...+.. +.+.-.....+..+..+....|.+-...++.+.+.+ .+
T Consensus 200 AAV~VICELArKnPkn-----yL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li----~s 267 (877)
T KOG1059|consen 200 AAVSVICELARKNPQN-----YLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM----ES 267 (877)
T ss_pred HHHHHHHHHHhhCCcc-----cccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH----Hh
Confidence 9999999999887543 45566766665543 234446677788888888887776666666555543 22
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHH
Q 001945 259 HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (992)
Q Consensus 259 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 338 (992)
+ .......+++.+++.. +....+.--...+..+.+.|...-+ |+|.+.+..+..++..+...-++ .+..-
T Consensus 268 T----~AmSLlYECvNTVVa~--s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgLlam~KI~ktHp~-~Vqa~ 337 (877)
T KOG1059|consen 268 T----VAMSLLYECVNTVVAV--SMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGLLAMSKILKTHPK-AVQAH 337 (877)
T ss_pred h----HHHHHHHHHHHHheee--hhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHHHHHHHHhhhCHH-HHHHh
Confidence 1 1223344455554432 2222211122334444444443222 33447777788888777766553 23344
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHhhhcHHHHhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHY 417 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (992)
...+...+.+.|...|--|+..+.-++.. .++..|+..++..+...+. ..|..-+.-+-.+|..-.-.....+
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdF 411 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDF 411 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 56667788999999999999988877764 5677788888887764433 6666655555555554322223344
Q ss_pred hhHHHHHHHhc
Q 001945 418 ESVLPCILNAL 428 (992)
Q Consensus 418 ~~ll~~l~~~l 428 (992)
+..+..++...
T Consensus 412 EWYlsVlveLa 422 (877)
T KOG1059|consen 412 EWYLSVLVELA 422 (877)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 80
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.74 E-value=4.3e-08 Score=78.09 Aligned_cols=66 Identities=36% Similarity=0.606 Sum_probs=61.5
Q ss_pred HHHHHHHHhCC-CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhccc--------CCCHHHHHHHHHHHHHHHh
Q 001945 23 AEDQIKRLAKD-PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA--------KLSPQLKQLVKQSLIESIT 88 (992)
Q Consensus 23 A~~~l~~~~~~-p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~--------~~~~~~~~~i~~~ll~~l~ 88 (992)
||+.|++++++ |+|+..|++++.++ .++.+|++|+++||+.+.++|. .++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 99999999999654 4899999999999999999999 9999999999999999875
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.71 E-value=1.1e-06 Score=99.13 Aligned_cols=301 Identities=17% Similarity=0.141 Sum_probs=188.6
Q ss_pred hHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCCh--h
Q 001945 119 LLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG--A 195 (992)
Q Consensus 119 ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~ 195 (992)
+++.+..++.+ ...+.+..|+.++..+..+..+ ...++.++|.+..++.| +..+||..|+.++..+.....+. .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 55666666654 2346778899999988877664 34578899999999999 99999999999999987665432 1
Q ss_pred hHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 001945 196 EVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (992)
+...|.++ ++..+..++.+ ....++..-..+|..++.....|+......=-..+ ...+ +.+.
T Consensus 500 daniF~eY---lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~---~n~~--nset--------- 562 (1431)
T KOG1240|consen 500 DANIFPEY---LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM---LNDP--NSET--------- 562 (1431)
T ss_pred cchhhHhh---hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc---ccCc--cccc---------
Confidence 23334333 34444445555 33445666667777777654433221110000000 0111 1100
Q ss_pred HHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchh-chHHHHHHHHhhhcCCChhh
Q 001945 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH-VFPPVFEFASVSCQNASPKY 353 (992)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~ 353 (992)
..+..... ..+.+...+-++...++.+.+. .++++..+.+..++.-+|+. .=..+++.+..++++.||+.
T Consensus 563 -~~~~~~~~-~~~~L~~~V~~~v~sLlsd~~~-------~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~L 633 (1431)
T KOG1240|consen 563 -APEQNYNT-ELQALHHTVEQMVSSLLSDSPP-------IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRL 633 (1431)
T ss_pred -ccccccch-HHHHHHHHHHHHHHHHHcCCch-------HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHH
Confidence 00000000 0000111122223334444332 67778888888888888843 33557788889999999999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCCh
Q 001945 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD 433 (992)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 433 (992)
|.+-...+.-++-..... ..-+-++|.+.++|.|+.+.|-..|+.++..+++.-- --..+..+++..+...|-.|+.
T Consensus 634 R~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hPN~ 710 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHPNL 710 (1431)
T ss_pred HHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCchH
Confidence 998877776555432211 1123578999999999999999999999999987521 0123556677777778888999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 001945 434 EVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 434 ~v~~~a~~~l~~l~~~~~ 451 (992)
-+|..+|..+..+...+.
T Consensus 711 WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 711 WIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999887764
No 82
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=0.001 Score=72.26 Aligned_cols=394 Identities=13% Similarity=0.161 Sum_probs=202.7
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc------cccccchHHHHHHHHHHhc-------CCC----------
Q 001945 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMG------EEILPFLDPLMGKLLAALE-------NSP---------- 473 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~l~~~l~~~l~-------~~~---------- 473 (992)
+..++|.+++.+.+.....-......+...+.... .....++..++.....-+. +.+
T Consensus 333 ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f 412 (980)
T KOG2021|consen 333 LLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFF 412 (980)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHH
Confidence 34477888888887766665555555555443331 1222344444444443321 111
Q ss_pred HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhc---cCC------h
Q 001945 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM---EPI------L 544 (992)
Q Consensus 474 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~------~ 544 (992)
.++|...-....+++...++.+ +..+-..+...+.+...+.+...+.|+..+-.++.+.....+ +.. +
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~---l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl 489 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLF---LNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVL 489 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHH
Confidence 2356665555555555544332 233334444555555445555666788888888876643221 111 1
Q ss_pred HHHHHHHHhc--cCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCC
Q 001945 545 PPFVEAAISG--FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSS 622 (992)
Q Consensus 545 ~~i~~~l~~~--l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (992)
..++..++.. ...+++.+.-. .+..+++. ..|-.+-++-+|.++.+.-.
T Consensus 490 ~~~~~ll~tsqv~~h~h~lVqLl---fmE~ivRY--~kff~~esq~ip~vL~aFld------------------------ 540 (980)
T KOG2021|consen 490 FLNELLLMTSQVLAHDHELVQLL---FMELIVRY--NKFFSTESQKIPLVLNAFLD------------------------ 540 (980)
T ss_pred HHHHHHHHHcccccCCchHHHHH---HHHHHHHH--HHHHhcchhhhHHHHHHHcc------------------------
Confidence 2334444332 22344444433 33444331 12334445555555544310
Q ss_pred CchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccC----CC-hhHHHHHHHHHHHHH
Q 001945 623 DDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASY----FH-EDVRYQAVFALKNIL 697 (992)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~vr~~a~~~l~~l~ 697 (992)
.-++++....+|..|-..+.++.+.++..+.||+++++..+..++.. .+ .+.+.....-=..+.
T Consensus 541 -----------~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIf 609 (980)
T KOG2021|consen 541 -----------SRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIF 609 (980)
T ss_pred -----------chhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceee
Confidence 01233444457888899999999999999999999999998887631 11 011110000000111
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHH---------HHHHHHhh-CChHHHHHH---HHHHHHHHHHHhCCcc-------c
Q 001945 698 TAAHAIFQSHNEGPAKAREILDTVMN---------IFIRTMTE-DDDKDVVAQ---ACTSIVEIINDYGYMA-------V 757 (992)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~-~~~~~~~~~---~~~~l~~~~~~~g~~~-------~ 757 (992)
...+-+....+..++.-..+.+.++. .+...+.+ +..+.+..+ ++.+++.+.+.+.... .
T Consensus 610 EtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~ 689 (980)
T KOG2021|consen 610 ETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGN 689 (980)
T ss_pred ecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccH
Confidence 22221111112222222223332222 11112222 333333332 2233333333221111 1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCC
Q 001945 758 EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR 837 (992)
Q Consensus 758 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 837 (992)
...+..+.+.++..+..... .+.++.++.-.++.+.-.+|+.+.|++++++..++ ++.+
T Consensus 690 ~~vf~~~ldvil~~ls~f~k------------------~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL---~s~d 748 (980)
T KOG2021|consen 690 MVVFSNILDVILVTLSFFNK------------------FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLL---SSTD 748 (980)
T ss_pred HHHHHHHHHHHHHHHhhccc------------------cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHH---hcCC
Confidence 23455555666655544321 11344455555677777899999998888777764 4544
Q ss_pred CccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhc
Q 001945 838 PLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKEL 875 (992)
Q Consensus 838 ~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l 875 (992)
. .+-..-++.++.++........+++++++|+++..+
T Consensus 749 ~-kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 749 L-KEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 467788899999998888888888899998887764
No 83
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00017 Score=79.07 Aligned_cols=501 Identities=14% Similarity=0.168 Sum_probs=275.6
Q ss_pred HHhcCCCHHHHHHHHHHH-HHHhCCCC---cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHH
Q 001945 10 IQFLMPDNDARRQAEDQI-KRLAKDPQ---VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85 (992)
Q Consensus 10 ~~~~s~d~~~r~~A~~~l-~~~~~~p~---~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~ 85 (992)
..+.|.-+..|+.|-+.. ..+.--.+ .++-.+...+ ..+.+.+++.-.++.+.-. ..|+......+.++.
T Consensus 20 s~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~-T~dlelKKlvyLYl~nYa~-----~~P~~a~~avnt~~k 93 (734)
T KOG1061|consen 20 SQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQ-TRDLELKKLVYLYLMNYAK-----GKPDLAILAVNTFLK 93 (734)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcc-cCCchHHHHHHHHHHHhhc-----cCchHHHhhhhhhhc
Confidence 334444446666666665 34433333 2333333333 3468888888877777632 223333333444445
Q ss_pred HHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHH
Q 001945 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLL 165 (992)
Q Consensus 86 ~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~ 165 (992)
... ++++.+|..+.+..+.+- .+ ..|.-+...+..++.+.++-+|..+..+...+...-++.. +-..+++.+.
T Consensus 94 D~~-d~np~iR~lAlrtm~~l~---v~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~--~~~gl~~~L~ 166 (734)
T KOG1061|consen 94 DCE-DPNPLIRALALRTMGCLR---VD-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV--EDSGLVDALK 166 (734)
T ss_pred cCC-CCCHHHHHHHhhceeeEe---eh-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc--cccchhHHHH
Confidence 444 588999977766655443 22 3566788888999999999999999988888876555432 2345777888
Q ss_pred HhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH
Q 001945 166 KCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV 245 (992)
Q Consensus 166 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 245 (992)
..+.| +++.|-..|+.++..+.+..++.. ...+.+.++..+...+..-++--+...++++........ .-.
T Consensus 167 ~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~----~ea 237 (734)
T KOG1061|consen 167 DLLSD-SNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS----REA 237 (734)
T ss_pred HHhcC-CCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc----hhH
Confidence 88888 999999999999999987764321 122334444433333332222233334444443333222 122
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHH
Q 001945 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (992)
Q Consensus 246 ~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~ 325 (992)
..+++.+..-..+. ...+-..+..++.......+. +.. .+...+-+.+..++.... +....+..-+..
T Consensus 238 ~~i~~r~~p~Lqh~--n~avvlsavKv~l~~~~~~~~-~~~-~~~~K~~~pl~tlls~~~--------e~qyvaLrNi~l 305 (734)
T KOG1061|consen 238 EDICERLTPRLQHA--NSAVVLSAVKVILQLVKYLKQ-VNE-LLFKKVAPPLVTLLSSES--------EIQYVALRNINL 305 (734)
T ss_pred HHHHHHhhhhhccC--CcceEeehHHHHHHHHHHHHH-HHH-HHHHHhcccceeeecccc--------hhhHHHHhhHHH
Confidence 33444433333222 344444455555555543332 110 012222222222222211 223334444444
Q ss_pred HHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001945 326 MALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (992)
Q Consensus 326 l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (992)
+....++ .+..-+..+.-..+++ -.++..-+.++..++.. .++++++.-+...-.+-+...-..+++++|.+
T Consensus 306 il~~~p~-~~~~~~~~Ff~kynDP-iYvK~eKleil~~la~~------~nl~qvl~El~eYatevD~~fvrkaIraig~~ 377 (734)
T KOG1061|consen 306 ILQKRPE-ILKVEIKVFFCKYNDP-IYVKLEKLEILIELAND------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRL 377 (734)
T ss_pred HHHhChH-HHHhHhHeeeeecCCc-hhhHHHHHHHHHHHhhH------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence 4444443 1111111110011222 23444455555555543 45667777777777787888888899999999
Q ss_pred HhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-CCHhHHHHHHHHH
Q 001945 406 AEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAI 484 (992)
Q Consensus 406 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~v~~~a~~~l 484 (992)
+....+. ...+..++..+.-...-|...++..+..+.+.++... +.++..+...+.+ .+++.|.+.++.+
T Consensus 378 aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~----~~vv~~l~~~~~sl~epeak~amiWil 448 (734)
T KOG1061|consen 378 AIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY----ESVVAILCENLDSLQEPEAKAALIWIL 448 (734)
T ss_pred hhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch----hhhhhhhcccccccCChHHHHHHHHHH
Confidence 8776432 5678888888886655666778888888888877532 4455555544443 3577888888888
Q ss_pred HHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh-ccC-CCCchh
Q 001945 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS-GFG-LEFSEL 562 (992)
Q Consensus 485 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-~l~-~~~~~~ 562 (992)
|.-+...++. ...|..++.+..++...+ .++.+....+-+++ ..+..++.++.++. +.+ .+++++
T Consensus 449 g~y~~~i~~a--------~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~--~p~~tq~~l~~vL~~~~~d~~~~dl 515 (734)
T KOG1061|consen 449 GEYAERIENA--------LELLESFLENFKDETAEV---QLELLTAAIKLFLK--KPTETQELLQGVLPLATADTDNPDL 515 (734)
T ss_pred hhhhhccCcH--------HHHHHHHHhhcccchHHH---HHHHHHHHHHHHhc--CCccHHHHHHHHHhhhhccccChhh
Confidence 8766654331 223444444433343332 34444444443332 22244556655554 333 347899
Q ss_pred hHHHHHHHHHHH
Q 001945 563 REYTHGFFSNIA 574 (992)
Q Consensus 563 r~~~~~~~~~i~ 574 (992)
|+.++..|.-+.
T Consensus 516 rDr~l~Y~RlLs 527 (734)
T KOG1061|consen 516 RDRGLIYWRLLS 527 (734)
T ss_pred hhhHHHHHHHhh
Confidence 999887766554
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.65 E-value=8.9e-06 Score=92.25 Aligned_cols=299 Identities=16% Similarity=0.184 Sum_probs=194.4
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC--
Q 001945 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-- 237 (992)
Q Consensus 160 i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-- 237 (992)
+++.+..+++.-...+.|.+|+..+..+..+..+. ..+...+|.+ ..++.+...+++..|+.++.+++..-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~----v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYF----VHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHH----HHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 45666677765456778999999999999998643 2233344444 45667788899999999999886532
Q ss_pred -ccchHHHH-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhh--hhccCCCCCCCCCC
Q 001945 238 -APLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP--LLAESNEAGEDDDL 313 (992)
Q Consensus 238 -~~~~~~~l-~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~--~l~~~~~~~~d~~~ 313 (992)
++.=...+ .-+++.+-.+..+. ....+|..--..+..+++..... +.... .+-. ++.+.+. +....
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~tA~rF------le~~q-~~~~~g~~n~~ns--et~~~ 565 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKTAYRF------LELTQ-ELRQAGMLNDPNS--ETAPE 565 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHHHHHH------HHHHH-HHHhcccccCccc--ccccc
Confidence 21111111 12344433343332 25566766666777777543322 11110 0000 1111111 00000
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChh
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (992)
....+-. ..+...+-+.+..++.++...+|.+-+..++-++..+... ..-+-|++++...|+|.+++
T Consensus 566 ~~~~~~~-----------~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~ 632 (1431)
T KOG1240|consen 566 QNYNTEL-----------QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWR 632 (1431)
T ss_pred cccchHH-----------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHH
Confidence 0011111 1122233344556677888889999998887777654332 12346789999999999999
Q ss_pred HHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC
Q 001945 394 VRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS 472 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 472 (992)
.|.+.+..|..++-+.+.. ..+ -++|.+.++|.|..+-|-..|+.++..+++.-- --++++-++++....++.++
T Consensus 633 LR~aFfdsI~gvsi~VG~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHHhhccceEEEEeeeeHHH---HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCc
Confidence 9999999998888777653 333 388999999999999999999999999987532 12478889999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHhh
Q 001945 473 PRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 473 ~~~v~~~a~~~l~~l~~~~~ 492 (992)
+.=+|..++..|..++...+
T Consensus 709 N~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 709 NLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 99999999999998887665
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.1e-05 Score=82.91 Aligned_cols=312 Identities=15% Similarity=0.105 Sum_probs=196.2
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
..+.++........+..|+.|......++.+....--.-...+..++..+.....||+..+|..|+.+|+......+...
T Consensus 214 ~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv 293 (533)
T KOG2032|consen 214 EMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV 293 (533)
T ss_pred cHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH
Confidence 33444444434455677889988877777766532111113467788888888899999999999999999999988888
Q ss_pred HhhhhhHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 414 VSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
..|...++..++.+|-|+ +..|...+.++|..+.+.. ...+.+|+-++.-++.+++.+.+.++|..++..+|.++...
T Consensus 294 ~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 294 RTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 889999999999888766 4789999999999998877 45688999999999999999999999999999999999988
Q ss_pred hccCcccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHH
Q 001945 492 EQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFF 570 (992)
Q Consensus 492 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~ 570 (992)
+..-..++ +++...+..++..-.++.-.+ ++|+... .+..++.........+++. .++ .+-. |- -.+.
T Consensus 374 g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~---~~~c~p~l~rke~~~~~q~---~ld-~~~~-~~--q~Fy 442 (533)
T KOG2032|consen 374 GGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE---LRTCYPNLVRKELYHLFQE---SLD-TDMA-RF--QAFY 442 (533)
T ss_pred CCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH---HHhcCchhHHHHHHHHHhh---hhH-HhHH-HH--HHHH
Confidence 87666555 344433333332222222111 1232222 2222221111111122221 111 0000 10 0111
Q ss_pred HHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchh-hhHHHHH
Q 001945 571 SNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVL-DEKAAAT 649 (992)
Q Consensus 571 ~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~a~ 649 (992)
...|. ...++.|.++-.+..... .+-+..| .++.+|.
T Consensus 443 n~~c~----~L~~i~~d~l~~~~t~~~--------------------------------------~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 443 NQWCI----QLNHIHPDILMLLLTEDQ--------------------------------------HIFSSSWEQVREAAV 480 (533)
T ss_pred HHHHH----HHhhhCHHHHHHHHHhch--------------------------------------hheecchHHHHHHHH
Confidence 11122 345566666655553221 0122334 2455566
Q ss_pred HHHHHHHHHhcccccch--HHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 001945 650 QALGLFALHTKSSYAPF--LEESLKILVRHASYFHEDVRYQAVFALKNILT 698 (992)
Q Consensus 650 ~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~ 698 (992)
..-+.+..++....-++ ..++...+..+..++..+++..|.+++..+..
T Consensus 481 l~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 481 LKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55556666665555554 45666667767778889999999999887753
No 86
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.61 E-value=0.0015 Score=82.94 Aligned_cols=572 Identities=16% Similarity=0.176 Sum_probs=296.7
Q ss_pred chHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC
Q 001945 314 APDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (992)
.....+...++.++-..+ .+........+.+++.+..-..|.+|...+...+.+.+....+++..++..++..+.|+
T Consensus 108 ~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~ 187 (2341)
T KOG0891|consen 108 EVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDP 187 (2341)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCC
Confidence 444555556655554433 33444445555566655566678999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHH----hhhhhHHHHHHHhcccCChH------------------------HHHHHHHH
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIV----SHYESVLPCILNALEDESDE------------------------VKEKSYYA 442 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~ll~~l~~~l~~~~~~------------------------v~~~a~~~ 442 (992)
++.+|..|+.++.......+.... ..+...+...-..+..+... .+...+..
T Consensus 188 ~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (2341)
T KOG0891|consen 188 KPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKG 267 (2341)
T ss_pred ChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999988776544321 11111111111111111100 11111000
Q ss_pred --HHH-----HHHhh--------cccc-ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHH
Q 001945 443 --LAA-----FCEDM--------GEEI-LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (992)
Q Consensus 443 --l~~-----l~~~~--------~~~~-~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l 506 (992)
+.. .+... +..+ ..|+...+..++..+. .....++..++.++-..+..+.++...+...+
T Consensus 268 ~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i 343 (2341)
T KOG0891|consen 268 KLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHI 343 (2341)
T ss_pred HHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhh
Confidence 000 00000 0000 0233333333433333 12256777788888888888888877655555
Q ss_pred HHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchh
Q 001945 507 KIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLP 586 (992)
Q Consensus 507 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~ 586 (992)
.+.+...+-....--...+.|++.++.++++..+......++..+...... .....++-.++..+ .|..+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~------~~l~e~l~~l~~rl----~~l~~ 413 (2341)
T KOG0891|consen 344 RQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLS------DSLLERLFILSQRI----PKLGQ 413 (2341)
T ss_pred hhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCch------HHHHHHHHHHHHhc----cchhh
Confidence 544433211111111245788888888888866666657777766554332 23344555555543 34455
Q ss_pred hhhHHHHhhccCCCCCccCCCCCcc-hhcccCCCCCCCchhhhhccccceeeecch-hhhHHHHHHHHHHHHHHhccccc
Q 001945 587 LVVPLAFSSCNLDDGSAVDIDGSDD-ENINGFGGVSSDDEAHCERSVRNISVRTGV-LDEKAAATQALGLFALHTKSSYA 664 (992)
Q Consensus 587 ~i~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~a~~~l~~~~~~~~~~~~ 664 (992)
++.+.++...+.---.. .+.+... -....+... .. ..-+++. ...-..|+++++.+.... ....
T Consensus 414 ~i~~rll~~~~~vl~~~-a~~~~~~~~vl~~~~~p----------~~--~~~~~~~~~~~~~~a~~~l~~~~~~~-~~~~ 479 (2341)
T KOG0891|consen 414 SIQDRLLNMTSQVLSGK-AFIQPGQFTVLPKLAIP----------KA--ILQKTGDSTDDIQLAFKTLGGFKFSG-YSLT 479 (2341)
T ss_pred HHHHHHHHHHHHHHhCc-cccCccccCccchhccc----------ch--hhhhcccccHHHHHHHHHHhhhhhhh-hhHH
Confidence 55555554432100000 0000000 000000000 00 0000000 011244677777655432 2222
Q ss_pred chHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 001945 665 PFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTS 744 (992)
Q Consensus 665 ~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 744 (992)
.++.+++. ..+...++++|..+..++..++.-.... ....+. ..++...++.+++.....++++.++...+.+
T Consensus 480 ~~~~~~~~---~~~~~~~~e~r~~~~l~~~~ll~~~~~~---~~~~~~-~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~ 552 (2341)
T KOG0891|consen 480 LFVQQCVD---SYLEADDSEIRKNAALTCCELLKYDIIC---SQTSPH-ALQVVKEVLSALLTVAIADTDPDIRIRVLSS 552 (2341)
T ss_pred HHHHHHHH---HHHhcccHHHHHHHHHHHHHHHhhhhhh---hcccch-HHHHHHHHHHHHHHHhccCCCcchhhhHHhh
Confidence 33444333 3345567899999987777666654321 011222 2245667777777666666666666555555
Q ss_pred HHHHH-HH----------------------------hCCccc-HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCccccc
Q 001945 745 IVEII-ND----------------------------YGYMAV-EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTA 794 (992)
Q Consensus 745 l~~~~-~~----------------------------~g~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 794 (992)
+..-. +. .|.... .+ ..+++.+....- ++..+ -+
T Consensus 553 l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~--a~vl~~lr~~~l----~~~s~----------l~ 616 (2341)
T KOG0891|consen 553 LNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP--AYVLPSLRKTLL----ELLTE----------LE 616 (2341)
T ss_pred hccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH--HHHhHHHHHHHH----HHhch----------hh
Confidence 44100 00 110000 00 001111111000 00000 00
Q ss_pred chHH--HHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHH
Q 001945 795 HDEV--IMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVL 872 (992)
Q Consensus 795 ~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll 872 (992)
.... .-...+..+..+.........+|++.++-.+...+.+..+ .+-..++.++++++..+|.....++...++.+.
T Consensus 617 ~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~ 695 (2341)
T KOG0891|consen 617 FSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGGEEMVKWVDELFSLII 695 (2341)
T ss_pred hcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhccchhhhccchHHHHHH
Confidence 0000 0001112222222222223456777777777777777665 567789999999999999777777788888888
Q ss_pred HhcCCCC-hHhHHHHHHHHHHHHhhcCcchhhH--HHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHH
Q 001945 873 KELASPD-AMNRRNAAFCVGELCKNGGESALKY--YGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (992)
Q Consensus 873 ~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~ 938 (992)
+.+.+.. ...|.++..++|.+....+-.+.|| ++.++..+.+.+. .+....++..++..+|.+..
T Consensus 696 ~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~-te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 696 KMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILK-TEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred HHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHh-HhhhhHHHHHHHHHhhhhcc
Confidence 8887554 5577889999999999888655553 5667766655554 23344555556666664433
No 87
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.60 E-value=0.00015 Score=74.25 Aligned_cols=331 Identities=13% Similarity=0.073 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc--chHHHHHH-HHHHh
Q 001945 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP--FLDPLMGK-LLAAL 469 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~--~~~~l~~~-l~~~l 469 (992)
.+|..|+..|..++.+++ ....++-++...+..++.+..+.++.++..++..+......+..| .-..+... +...+
T Consensus 270 ~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 589999999999999984 455678889999999999999999999999999887766422221 11112111 11111
Q ss_pred c----------CCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhh
Q 001945 470 E----------NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR 539 (992)
Q Consensus 470 ~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 539 (992)
- +.....+..+..+++++....-..+..--....+....-. .+.++.-++..|+..++...-.-+...
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC--~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC--NDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc--cchHHHHHHHHHHhhceeEEeccchhh
Confidence 1 1123455666666666655544444332222222221111 133344446666655544322111111
Q ss_pred ccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccC---chhhhhH----HHHhhccCCCCCccCCCCCcch
Q 001945 540 MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQ---YLPLVVP----LAFSSCNLDDGSAVDIDGSDDE 612 (992)
Q Consensus 540 ~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~---~l~~i~~----~l~~~~~~~~~~~~~~~~~~~~ 612 (992)
...+.....+.++..+.+..-..|..++.++|+|...+-..+.. +-..+.. .++...+..+ .
T Consensus 427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~--------A--- 495 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEAS--------A--- 495 (728)
T ss_pred hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhh--------h---
Confidence 12223344455555565544557778888888888877644332 2222322 2222221100 0
Q ss_pred hcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHH-HHhccc----CCChhHHH
Q 001945 613 NINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKI-LVRHAS----YFHEDVRY 687 (992)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~----~~~~~vr~ 687 (992)
....+|..|.++||.....+.....+-+..+.+. +.+..+ .....||.
T Consensus 496 ---------------------------d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W 548 (728)
T KOG4535|consen 496 ---------------------------DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRW 548 (728)
T ss_pred ---------------------------hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccch
Confidence 0013678888888887766644444444444333 233322 24567999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 001945 688 QAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDA 767 (992)
Q Consensus 688 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~ 767 (992)
.|+-+++.+++.-.--+. -.+..+.+++.|...+.+..+-.++..+..++...-...| ....+.-....
T Consensus 549 NaCya~gNLfkn~a~~lq--------~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~---~~d~~~Lsw~~ 617 (728)
T KOG4535|consen 549 NACYAMGNLFKNPALPLQ--------TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ---YGDQYALSWNA 617 (728)
T ss_pred HHHHHHHHhhcCcccccc--------CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc---chhHHhHHHHH
Confidence 999999999875221011 1234566777777766665566666655555542222111 23344444555
Q ss_pred HHHHHhhh
Q 001945 768 TLLLLREE 775 (992)
Q Consensus 768 l~~~l~~~ 775 (992)
++..|..+
T Consensus 618 lv~aLi~s 625 (728)
T KOG4535|consen 618 LVTALQKS 625 (728)
T ss_pred HHHHHHHH
Confidence 55555443
No 88
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=0.0034 Score=72.34 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHHHHhhhhcccC--C---CHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc-ccCCCCCCcchH
Q 001945 47 AKTPNVRQLAAVLLRKKITGHWAK--L---SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK-YAVPAGEWPDLL 120 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~~~~--~---~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~-~~~~~~~~~~ll 120 (992)
+++-..|..-...+-+.+...... + +.+.+..+.+.+.+.+. |.++.||..+-++...+.. +..|.+.|.+++
T Consensus 323 ~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~ 401 (1251)
T KOG0414|consen 323 SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVL 401 (1251)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHH
Confidence 344555655544555554433322 1 12233334444555555 6899999999999999886 445667899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 121 PFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 121 ~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
......+.+.+..+|..|++.+..+....|
T Consensus 402 ~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 402 ELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987765
No 89
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.49 E-value=0.00038 Score=78.78 Aligned_cols=346 Identities=17% Similarity=0.237 Sum_probs=193.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHh
Q 001945 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE 202 (992)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 202 (992)
+..++...+ .....++.+|..+++.......-.-..+++.+.++|.. .+.++...+..+|.++.-+........ -..
T Consensus 255 ~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~~m~-~~g 331 (708)
T PF05804_consen 255 LQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKDEMA-ESG 331 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHH-HcC
Confidence 333343333 33446677788887765432222234578889999998 789999999999999887764322221 234
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 001945 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (992)
Q Consensus 203 ~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 280 (992)
.+|.+.. .+.+++.+....++..|..+.-...- ...+- .+++.+...+.+ +..+..++.++..++...
T Consensus 332 iV~kL~k----Ll~s~~~~l~~~aLrlL~NLSfd~~~--R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd 401 (708)
T PF05804_consen 332 IVEKLLK----LLPSENEDLVNVALRLLFNLSFDPEL--RSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDD 401 (708)
T ss_pred CHHHHHH----HhcCCCHHHHHHHHHHHHHhCcCHHH--HHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCH
Confidence 5555544 55667788888999999888654221 11111 244555555543 345667778887776432
Q ss_pred H--hHhhhcCChHHHHHHHhhhhccCCCCCCCCC---------CchHH-----------------------HHHHHHHHH
Q 001945 281 Y--NSLKKHKLVIPILQVMCPLLAESNEAGEDDD---------LAPDR-----------------------AAAEVIDTM 326 (992)
Q Consensus 281 ~--~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~---------~~~~~-----------------------~a~~~l~~l 326 (992)
. ..+... ..++.++..+....++.-+-+ ...+. ....++..+
T Consensus 402 ~~r~~f~~T----dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi 477 (708)
T PF05804_consen 402 EARSMFAYT----DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI 477 (708)
T ss_pred hhHHHHhhc----chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH
Confidence 1 122221 245555555444322110000 00000 011233333
Q ss_pred HHHcc--hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC-H-HHHHHhHH--HHHHHHHhhcCC--CChhHHHHH
Q 001945 327 ALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-A-EWMKEKLE--SVLHIVLGALRD--PEQFVRGAA 398 (992)
Q Consensus 327 ~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~-~~~~~~l~--~i~~~l~~~l~d--~~~~vr~~a 398 (992)
+.+-| +..+..++.-+...+.+.+ .-...+.++|.++.-. + ......+. .++|.+...|.. .++.+...+
T Consensus 478 S~h~~~~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~ 555 (708)
T PF05804_consen 478 SQHDGPLKELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEV 555 (708)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHH
Confidence 33332 2222222222222233322 2355666677766532 1 12222222 467777777753 245688888
Q ss_pred HHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccC--ChHHHHHHHHHHHHHHHhhcc--ccccchHHHHHHHHHHhcCC
Q 001945 399 SFALGQFAEYLQPEIVSHY--ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGE--EILPFLDPLMGKLLAALENS 472 (992)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~ 472 (992)
+..+|.++.. +.....+ .++++.++..+... +.......+.++..++..-.. .+. .-..+...++.++.+.
T Consensus 556 Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll-~~~~~~~ylidL~~d~ 632 (708)
T PF05804_consen 556 VILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLL-KETEIPAYLIDLMHDK 632 (708)
T ss_pred HHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHH-hccchHHHHHHHhcCC
Confidence 8999988865 3333333 47788888887654 355666777888887765321 121 1235778899999999
Q ss_pred CHhHHHHHHHHHHHHHHH
Q 001945 473 PRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 473 ~~~v~~~a~~~l~~l~~~ 490 (992)
+..+|..+=.++.-++..
T Consensus 633 N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 633 NAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999888888777654
No 90
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.46 E-value=6.1e-05 Score=81.06 Aligned_cols=254 Identities=16% Similarity=0.191 Sum_probs=166.1
Q ss_pred cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhc--cChhhhHhHHHHHHHHH
Q 001945 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL--TNDEDLRSRARATELLG 529 (992)
Q Consensus 452 ~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~l~ 529 (992)
..+.|+...++..|+..+..+...--+..+.|+-++....++...|+...+++.|..++.. .+...-..-...+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 4678999999999999998755444567889999999999999999999988888777753 22222233456889999
Q ss_pred HHHHhhch---hhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc-cCccCchhhhhHHHHhhccCCCCCccC
Q 001945 530 LVAESVGR---ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVD 605 (992)
Q Consensus 530 ~l~~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~ 605 (992)
.+.+.+.. +.+...-+.+++.+...++.+-.++-.++++.++.+.+..+ ..+.+..-.++|.++.-.
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~--------- 168 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA--------- 168 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG---------
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc---------
Confidence 88876542 22333444566666666777777889999999999999887 667677777778776321
Q ss_pred CCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccCCCh
Q 001945 606 IDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PFLEESLKILVRHASYFHE 683 (992)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 683 (992)
-|+ +.+ .-.+..+.|..+.+..+..+. ++++.++..+.+++.+...
T Consensus 169 -----lWe------------------------~~g---niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~ 216 (435)
T PF03378_consen 169 -----LWE------------------------RRG---NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN 216 (435)
T ss_dssp -----GGG------------------------STT---THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC
T ss_pred -----hhc------------------------cCC---CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc
Confidence 111 001 115566788888888776664 6789999999888775322
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCccc
Q 001945 684 DVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV 757 (992)
Q Consensus 684 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 757 (992)
+ ..++..|..++..+. .+.+.++++.++..++..+.+......+...+..++-++...|+..+
T Consensus 217 D--~~gF~LL~~iv~~~p---------~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 217 D--HYGFDLLESIVENLP---------PEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp H--HHHHHHHHHHHHHS----------HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred c--hHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 2 457777777777643 35577788888888888887665555555555555555555565433
No 91
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.44 E-value=1.6e-06 Score=76.76 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=90.5
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
+++.+.+.+.+.+|..|..++.+++.++...++.....+. .+++.+.+.+.|+++.++..|+++|++++...++.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4455556677888999999999999999886555555454 789999999999999999999999999998764333333
Q ss_pred h-hhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 417 ~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
. .++++.+.+.+.+.+..++..++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 458999999999999999999999999875
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.41 E-value=5.5e-07 Score=65.77 Aligned_cols=55 Identities=38% Similarity=0.662 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001945 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (992)
|.+|.+|+++||.+++.+++...++.+.+++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999864
No 93
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0067 Score=66.30 Aligned_cols=372 Identities=14% Similarity=0.152 Sum_probs=195.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-HHHhCCCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHH--------
Q 001945 7 LLLIQFLMPDNDARRQAEDQI-KRLAKDPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQ-------- 74 (992)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~l-~~~~~~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~-------- 74 (992)
++-+.+.++|.+.+-+|-+.+ ..+.+...+-..+.+++.- +.+.++ |+.+--+|+-+|.-
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~el--------KKLly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHEL--------KKLLYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHH--------HHHHHHHHHHccccCCCcccHH
Confidence 344556667777776666666 3444443444445555542 233333 44444456543211
Q ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccc
Q 001945 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~ 154 (992)
..-.+.+..-+-|. .+++.+|-..-+-+..+ .-|+ -..++.|.+.+++.+..+-+|..|..++..|...+. .+.
T Consensus 96 EMILvcna~RkDLQ-HPNEyiRG~TLRFLckL---kE~E-Llepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~ 169 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQ-HPNEYIRGSTLRFLCKL---KEPE-LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI 169 (948)
T ss_pred HHHHHHHHHhhhcc-CchHhhcchhhhhhhhc---CcHH-HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc
Confidence 11122333334445 38889996555544443 3332 567789999999999988899999988888876633 334
Q ss_pred ccHHHHHHHHHHhcCCCCChHHHHHHHHHHH------------HhhcccCCh-hh-HHHHHhhHH-----------HHHH
Q 001945 155 PHFADMQALLLKCLQDETSNRVRIAALKAIG------------SFLEFTNDG-AE-VVKFREFIP-----------SILN 209 (992)
Q Consensus 155 ~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~------------~l~~~~~~~-~~-~~~~~~~~~-----------~ll~ 209 (992)
+..++++.-+ |....++..+..|+-.|. +.+...++- .. ...+.+++- ..+.
T Consensus 170 pDapeLi~~f---L~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~ 246 (948)
T KOG1058|consen 170 PDAPELIESF---LLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR 246 (948)
T ss_pred CChHHHHHHH---HHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH
Confidence 4455554333 332255555555443322 211111100 00 000001110 1111
Q ss_pred HHHHHhhc-----------------CCHHHHHHHHHHHHHHhcCCcc----c------------hHHHHHHHHHHHHHHh
Q 001945 210 VSRQCLAS-----------------GEEDVAVIAFEIFDELIESPAP----L------------LGDSVKSIVHFSLEVS 256 (992)
Q Consensus 210 ~l~~~l~~-----------------~~~~~~~~~~~~l~~l~~~~~~----~------------~~~~l~~li~~~~~~~ 256 (992)
.+...+.+ .++.....+..++..++...+. . -...+..++--++.+.
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL 326 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL 326 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc
Confidence 11222222 2333344444555544432211 0 0111222222223344
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchH
Q 001945 257 SSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP 336 (992)
Q Consensus 257 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~ 336 (992)
+.+ +-++|..++.+...++.. .-+..++..+-.-+.+....+.|+....|....+.+...+..+++ +-.
T Consensus 327 ss~--dldvr~Ktldi~ldLvss--------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-~aa 395 (948)
T KOG1058|consen 327 SSP--DLDVRSKTLDIALDLVSS--------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-VAA 395 (948)
T ss_pred Ccc--cccHHHHHHHHHHhhhhh--------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-HHH
Confidence 444 556777777776666542 234556666655555444333344445677777788777777763 344
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
.+++.+.+.+.+.+...-...+..+....+..+..-.. ++..++..+. =.+..+-..|+|.+|.+++...
T Consensus 396 tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 396 TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 56667777788888777777777777777766543332 3333333333 2466788899999999999874
No 94
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.38 E-value=6.7e-05 Score=76.84 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHH-HhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHH
Q 001945 219 EEDVAVIAFEIFDE-LIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (992)
Q Consensus 219 ~~~~~~~~~~~l~~-l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (992)
..+.+..++.-|.. +.+.......+++..++..++++.++. .++..|..|+.+|..+++..|..+.+ ..+-.+...
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q~~~l~D--stE~ai~K~ 376 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQPARLFD--STEIAICKV 376 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhchHhhhc--hHHHHHHHH
Confidence 34556666664443 445555566788888888888888763 27788999999999999888776554 233333333
Q ss_pred hhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH-HHHHHhH
Q 001945 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKL 376 (992)
Q Consensus 298 ~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l 376 (992)
++.-.+..+ ...+.++..|+..++.+.|...+..+-+.+.. .|...--+++.++..+.+... +.+...+
T Consensus 377 Leaa~ds~~------~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 377 LEAAKDSQD------EVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHHhCCch------hHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 333333322 24566667778888888886555555555433 455555667778999998764 6777789
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc-HHHHhhhhhHHH
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ-PEIVSHYESVLP 422 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~ 422 (992)
+++.|.++++.+..+..||.+|..||-.+...++ ..+.+|+.++-.
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 9999999999999999999999999999999988 667777766543
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00077 Score=74.28 Aligned_cols=226 Identities=14% Similarity=0.137 Sum_probs=137.2
Q ss_pred ChhhHHHHHHHHHHHhh-cCHHHHHHh-HHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHH
Q 001945 350 SPKYREAAVTAIGIISE-GCAEWMKEK-LESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCIL 425 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~~-~~~~~~~~~-l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~ 425 (992)
|......|+.-+..+.- +..+.+..+ ++.++|.++..++++ ++.+...||+||..+++.+++...-.. ...+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 44444344433333332 223333333 578999999999964 788999999999999999987644322 35788888
Q ss_pred HhcccCC-hHHHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHH
Q 001945 426 NALEDES-DEVKEKSYYALAAFCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERV 502 (992)
Q Consensus 426 ~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 502 (992)
..|..-. -.|.+.++.+|..+.+..+..+.. -+-..+ ..+..+ ...++..|+...++++.....+--.|+-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L-sylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVL-SYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH-HHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 7776443 578899999999998877654321 111111 122222 356788899999999988875555666778
Q ss_pred HHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhc--hhhccCCh-HHHHHHHHhccCCC----CchhhHHHHHHHHHHHH
Q 001945 503 LELLKIFMVLTNDEDLRSRARATELLGLVAESVG--RARMEPIL-PPFVEAAISGFGLE----FSELREYTHGFFSNIAG 575 (992)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~-~~i~~~l~~~l~~~----~~~~r~~~~~~~~~i~~ 575 (992)
+|+|..+++..+++-. +.+.-|+..++..+. ++.+...+ ..++..+.+.+.-. +..+....+..+..|+.
T Consensus 337 lPlL~~lLs~~D~k~i---es~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS 413 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPI---ESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSS 413 (1051)
T ss_pred HHHHHHHHhhccchhH---HHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHcc
Confidence 9999999987654432 245556666665442 33333222 12333333322211 23345556666777776
Q ss_pred HcccCcc
Q 001945 576 VLEDGFA 582 (992)
Q Consensus 576 ~~~~~~~ 582 (992)
.++-.|.
T Consensus 414 ~~pl~~~ 420 (1051)
T KOG0168|consen 414 GSPLLFR 420 (1051)
T ss_pred CChHHHH
Confidence 6554443
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.0011 Score=68.19 Aligned_cols=458 Identities=17% Similarity=0.204 Sum_probs=240.3
Q ss_pred CHhHHHHHHHHHHHHHcccCCC---CCCcchHHHH---------HHhhcCCCHHHHHHHHHHHHHhhhhhhh--------
Q 001945 92 SAPVRRASANVVSIIAKYAVPA---GEWPDLLPFL---------FQFSQSEQEEHREVALILFSSLTETIGQ-------- 151 (992)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l---------~~~l~~~~~~~~~~al~~l~~l~~~~~~-------- 151 (992)
...||..+-.++....+..-.+ +.|.-++|.- .--++++++..|.-+++++..+.+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 3456666666655544321000 4666665532 2235677888999999999988865432
Q ss_pred ---ccccc-------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 001945 152 ---TFRPH-------FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (992)
Q Consensus 152 ---~~~~~-------~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (992)
.|.++ +.+...++.-.|.....+.+-...++|+..++...+- ..- --.++..+.+.+...+.+.|+.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~--~~l-~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY--DRL-KLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch--HHH-HHHHHHHHHHHHHHHhhcCCCC
Confidence 12222 2334455555555446777888899999999887641 111 1345566777777778888889
Q ss_pred HHHHHHHHHHHHhcCCccch----------------HHH------HH-----------------------HHHHHH----
Q 001945 222 VAVIAFEIFDELIESPAPLL----------------GDS------VK-----------------------SIVHFS---- 252 (992)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~----------------~~~------l~-----------------------~li~~~---- 252 (992)
++..++..+..++..+...= .+| .+ +++..+
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 99888888887776432100 000 00 011110
Q ss_pred -------------HHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHH
Q 001945 253 -------------LEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (992)
Q Consensus 253 -------------~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (992)
...++.......+|..+++++..++.+.+.. +. +..++..++...+.+... .....+
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~-~~--~~~~l~RvI~~~~~~~~p-------~~~l~~ 315 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMT-QA--YLMELGRVICKCMGEADP-------SIQLHG 315 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHccCCCCCh-------HHHHHH
Confidence 1111222234456888888888877654321 11 333344444444444433 455667
Q ss_pred HHHHHHHHHHcchhchHH------HHH-HHHhhh---------cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH
Q 001945 320 AEVIDTMALNLAKHVFPP------VFE-FASVSC---------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIV 383 (992)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~------~~~-~l~~~l---------~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l 383 (992)
..+++.+...++....|. ... +-...+ .+.......++|.++..|.......+...-....+.+
T Consensus 316 a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~F 395 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITF 395 (728)
T ss_pred HHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHH
Confidence 777777766555222211 111 111111 1122334566777777666532222211122344444
Q ss_pred HhhcC-CCChhHHHHHHHHHHHhHhhhcHHH-HhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHH
Q 001945 384 LGALR-DPEQFVRGAASFALGQFAEYLQPEI-VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (992)
Q Consensus 384 ~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l 461 (992)
..+.+ +++..||.+|.++++-+.-+-+-.. ..+.......++..+.|..-.+|+.+.++++++.+..-..+
T Consensus 396 l~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~------- 468 (728)
T KOG4535|consen 396 LLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM------- 468 (728)
T ss_pred HhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC-------
Confidence 44444 4677788899988887765532211 12335566677777888777889999999998876653221
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhcc
Q 001945 462 MGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (992)
Q Consensus 462 ~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 541 (992)
+.++..+-.+.|.+.... +... +..+.+..+++..+++.++.+.+.+.+ ...
T Consensus 469 ------------Ps~~s~~eR~sg~ll~~~--------------~~~A-~~~~Ad~dkV~~navraLgnllQvlq~-i~~ 520 (728)
T KOG4535|consen 469 ------------PTPDSFQERFSGLLLLKM--------------LRSA-IEASADKDKVKSNAVRALGNLLQFLQP-IEK 520 (728)
T ss_pred ------------CCchHHHHHHHHHHHHHH--------------HHHH-HHhhhhhhhhhhHHHHHHhhHHHHHHH-hhh
Confidence 222222222222221110 0000 011112223445556666655544432 222
Q ss_pred CChHHHHHHHHhccC-----CCCchhhHHHHHHHHHHHHHccc--CccCchhhhhHHHHhhcc
Q 001945 542 PILPPFVEAAISGFG-----LEFSELREYTHGFFSNIAGVLED--GFAQYLPLVVPLAFSSCN 597 (992)
Q Consensus 542 ~~~~~i~~~l~~~l~-----~~~~~~r~~~~~~~~~i~~~~~~--~~~~~l~~i~~~l~~~~~ 597 (992)
+-...+++.-...+. .....++=-++.++|++.+.-.- .-.++.+.+++.|.....
T Consensus 521 ~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~ 583 (728)
T KOG4535|consen 521 PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVT 583 (728)
T ss_pred ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHH
Confidence 223333333222111 12445666677888888876442 235778888888887654
No 97
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.013 Score=71.07 Aligned_cols=360 Identities=15% Similarity=0.154 Sum_probs=172.1
Q ss_pred ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-C--CChhHHHHHHHHHH------HhHhhhcHHHHhh----
Q 001945 350 SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-D--PEQFVRGAASFALG------QFAEYLQPEIVSH---- 416 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d--~~~~vr~~a~~~l~------~l~~~~~~~~~~~---- 416 (992)
.+.++..++.++..+.+.....+.-+....+..+...+- + .+..|+..--+++. .+....++++...
T Consensus 972 ~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d 1051 (2067)
T KOG1822|consen 972 SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKD 1051 (2067)
T ss_pred CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCccc
Confidence 346666777777777765443333444444444444432 2 34444544444444 5566555554332
Q ss_pred -----hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 417 -----YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 417 -----~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
....+-...-.+..+++-++.++.+++..+---.+. .-.++.++..+..++..+..-.|...+.++..++..-
T Consensus 1052 ~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1052 STSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred chhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 222333333344455678899999998887544443 3456778888888887776667777777776665542
Q ss_pred hccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh-hccCCh--HHHHHHHHhccCCCCchhhHHHHH
Q 001945 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA-RMEPIL--PPFVEAAISGFGLEFSELREYTHG 568 (992)
Q Consensus 492 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~--~~i~~~l~~~l~~~~~~~r~~~~~ 568 (992)
......|..-+.+.+ +....++ .+.|.. +..+-.++. ...+..+......
T Consensus 1130 ~sev~e~a~~L~~~~-------------------------~~e~~~d~~~~pe~gLeg~l~~mld--~e~d~~l~~~I~~ 1182 (2067)
T KOG1822|consen 1130 ASEVCEYAQLLAKTL-------------------------AVETSPDANIRPEAGLEGALFIMLD--TETDNKLLKNILE 1182 (2067)
T ss_pred HHHHHHHHHHhhhhh-------------------------hhhhChhhhcCccccchHHHHHHcC--CchHHHHHHHHHH
Confidence 222111111111000 0000010 111111 111111111 1223444555555
Q ss_pred HHHHHHHHcc-cCccCchhhhhHHHHhhccCCC-----CC----ccCCCCCcchhc-ccCCCCCCCchhhhhccccceee
Q 001945 569 FFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDD-----GS----AVDIDGSDDENI-NGFGGVSSDDEAHCERSVRNISV 637 (992)
Q Consensus 569 ~~~~i~~~~~-~~~~~~l~~i~~~l~~~~~~~~-----~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 637 (992)
.|.++...+. +.+..|+-.....+-....... +. ..+.++.+++.+ .+++.. ++..|..
T Consensus 1183 tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~-----~~s~p~~----- 1252 (2067)
T KOG1822|consen 1183 TLSRMLNSLADELLSSWLMLLKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTVLTTVSRT-----DDSKPLV----- 1252 (2067)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccccccccccccchhhcccchhhHHhhhccc-----cccCCcc-----
Confidence 5555443332 3333333222222211111110 00 000001111111 001100 0011111
Q ss_pred ecchhhhHHHHHHHHHHHHHHhc----------------cc------ccchHHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 001945 638 RTGVLDEKAAATQALGLFALHTK----------------SS------YAPFLEESLKILVRHASYFHEDVRYQAVFALKN 695 (992)
Q Consensus 638 ~~~~~~~k~~a~~~l~~~~~~~~----------------~~------~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~ 695 (992)
...|..|..|..++..++..+. .. +.-++.+++.+..-...+.++..|...++.|..
T Consensus 1253 -qprW~Trvfaa~cv~r~i~~c~a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~ 1331 (2067)
T KOG1822|consen 1253 -QPRWPTRVFAAECVLRIINVCEAVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEE 1331 (2067)
T ss_pred -ccccchHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHH
Confidence 1234455666666653222111 11 122344455555555556788999999999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 001945 696 ILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEII 749 (992)
Q Consensus 696 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 749 (992)
+++.+....++.-.|-..+.++-.++-..+.....++..+++...+++.....+
T Consensus 1332 vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wi 1385 (2067)
T KOG1822|consen 1332 VIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWI 1385 (2067)
T ss_pred HHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHH
Confidence 998877666665545445566666666666666667778888877777665444
No 98
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.28 E-value=0.014 Score=73.44 Aligned_cols=294 Identities=8% Similarity=0.091 Sum_probs=175.2
Q ss_pred CCChhHHHHHHHHHHHhhhhccc--CCC-HHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccC--CCCCCcchHH
Q 001945 47 AKTPNVRQLAAVLLRKKITGHWA--KLS-PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV--PAGEWPDLLP 121 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~~~--~~~-~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~--~~~~~~~ll~ 121 (992)
+.+..++.+|.-.||+.-.+... .++ -..+..+.+.+...+.+..+..+|..+.+++..+..... -...|..++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 34677889999888876544322 221 123445556666666666788999999999998765322 1358999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccc----ccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCC----
Q 001945 122 FLFQFSQSEQEEHREVALILFSSLTETIGQTFR----PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND---- 193 (992)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~---- 193 (992)
.+.....+..+.....|+..+..++...-..+. ..+.+++..+.+......+.++-..|+..|..+..+..+
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence 999888888888999999999988766443222 456677777777666534566666666666544221100
Q ss_pred --------------------h-h------hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHH---
Q 001945 194 --------------------G-A------EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD--- 243 (992)
Q Consensus 194 --------------------~-~------~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--- 243 (992)
. . .......++-+++..+.....++++++|..|+..|.+++..++..|.+
T Consensus 1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 0 0 000112344445555666666788899999999999888776655544
Q ss_pred --HHHHHHHHHHHHhhCC---------------------CCChHHHHHHHHHHHHHHHhhHhHhhh-cCChHHHHHHHhh
Q 001945 244 --SVKSIVHFSLEVSSSH---------------------NLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCP 299 (992)
Q Consensus 244 --~l~~li~~~~~~~~~~---------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~~il~~l~~ 299 (992)
.+..++-.++..+... +.+......+..++..++.-....+.. ...++.++..+..
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322210 111123334444444444332222211 1144555555555
Q ss_pred hhccCCCCCCCCCCchHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhc
Q 001945 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQ 347 (992)
Q Consensus 300 ~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~ 347 (992)
.+....+ ...+.+..|+..+....| ++.|..+...+.+.+.
T Consensus 1468 ci~q~n~-------~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1468 FIKRPHQ-------SLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHcCchH-------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 5554443 678888999998887766 5666666666665543
No 99
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.016 Score=65.50 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHH
Q 001945 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (992)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 76 (992)
|..-+.+++..+.+.|.+.+|--.-+|..+.+ +|+-.....+.+++ ++++.+|.+|...+...= .++..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~-------~~el~ 125 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR-------VKELL 125 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------hHHHH
Confidence 34456678888888899999999999988865 57655555555554 578999999987665431 24455
Q ss_pred HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcc--hHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q 001945 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD--LLPFLFQFSQSEQEEHREVALILFSSLTET 148 (992)
Q Consensus 77 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (992)
..+...+.+.+. ++.+.||+.++.++..+.+.+- ...++ +...+..++.+.++.+...|+..+..+...
T Consensus 126 ~~~~~~ik~~l~-d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 126 GNIIDPIKKLLT-DPHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHcc-CCcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566666666666 6899999999999999997652 23433 455566677788999999999999988766
No 100
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.001 Score=71.24 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=170.1
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
...+..+.....+ .+..||..|++++..+-+... +-..+.+...+.+.+++.+++..|++.+.-..+..
T Consensus 197 ~~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcC-CCcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 3445556667677 999999999999888776432 11223444556677788899999988888777665
Q ss_pred cc---ch---HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHH-HHHhhhhccCC-----
Q 001945 238 AP---LL---GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPIL-QVMCPLLAESN----- 305 (992)
Q Consensus 238 ~~---~~---~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il-~~l~~~l~~~~----- 305 (992)
|. .. .......+.-+..... |.+..+|..|.+.++.+-..+.. ++.+.+ ..++.-+..+-
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vSee------~i~QTLdKKlms~lRRkr~ahkr 337 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVSEE------IIQQTLDKKLMSRLRRKRTAHKR 337 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhHHH------HHHHHHHHHHhhhhhhhhhcccc
Confidence 31 11 1122222222223333 34677888888888766543322 222211 11222110000
Q ss_pred --CCCCCCCCchHHHHHHHHHHHHHHcc---hhchHH-HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHH
Q 001945 306 --EAGEDDDLAPDRAAAEVIDTMALNLA---KHVFPP-VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (992)
Q Consensus 306 --~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~-~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i 379 (992)
......+|+..+.... +.=++... ..++|. .-..+...+.++-..+|.+|..+++.++...+.. -..-
T Consensus 338 pk~l~s~GewSsGk~~~a--dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~a 411 (823)
T KOG2259|consen 338 PKALYSSGEWSSGKEWNA--DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRA 411 (823)
T ss_pred hHHHHhcCCcccCccccc--cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHH
Confidence 0000011110000000 00000000 000000 0111223356666789999999999999865543 2355
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 459 (992)
+..++..++|+-..||..|+++|..++..+. .-+..++.++..|.|.+..+|...-. ++..+.-.-..-+.
T Consensus 412 ldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~e----lL~~~~~~d~~~i~ 482 (823)
T KOG2259|consen 412 LDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRE----LLKNARVSDLECID 482 (823)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHH----HHHhcCCCcHHHHH
Confidence 7788888899999999999999999988742 22457888999999999999986444 44444322234455
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 460 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
..+..+...+... +.-|...+.|++.++...+.
T Consensus 483 m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 483 MCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 5566666665542 23456778888888776543
No 101
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.23 E-value=3.7e-05 Score=87.64 Aligned_cols=204 Identities=19% Similarity=0.193 Sum_probs=160.1
Q ss_pred hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001945 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
.++.+.+-+.+...+.|++|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|...|..+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45566666777778899999999999999988887655 22333444555666666779999999999999999999998
Q ss_pred HHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH
Q 001945 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 490 (992)
..+.+|...++|.++..+.+..+.++..+..++..++.. ..+..+.+.+...+.+.++.++..+...++.....
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 888889999999999999999999999999999988873 34566778888888999999999999999988877
Q ss_pred hhcc--CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCCh
Q 001945 491 AEQA--FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (992)
Q Consensus 491 ~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (992)
.+.. +..-...+.|.+.... +|.+..+|..+.++++.+.+.+|...+..++
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~---~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHI---NDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhc---cCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7632 2233455666665544 4455678889999999999999875554443
No 102
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.0031 Score=69.72 Aligned_cols=434 Identities=12% Similarity=0.091 Sum_probs=218.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhC--C-------C--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCC
Q 001945 4 SLELLLIQFLMP-DNDARRQAEDQIKRLAK--D-------P--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (992)
Q Consensus 4 ~l~~ll~~~~s~-d~~~r~~A~~~l~~~~~--~-------p--~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~ 71 (992)
.+.++|+++.+. |+..+-+|-.+|-++.. + | .+++.|..++....++.+..+|+..|.....-.-+..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467899999876 88888888888866542 2 2 3578899998877899999999888777664332221
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCC-CcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE-WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
.--.-+.....|++.|..-.-..|-.+.-+++..|.+.. |..- -..-+...++.+.=-....+..|+.+...+|..+.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111111222344444443344556666667777666532 1100 01111122222211134567778888888888776
Q ss_pred hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhH-HHHHHHHHHHhhcCC----HHHHHH
Q 001945 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGE----EDVAVI 225 (992)
Q Consensus 151 ~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~----~~~~~~ 225 (992)
..--.++-+.+|++.+.|+. .+.+.-..++-|+..++....+. ...+.++. +.+++.+.+++.-.+ ..+...
T Consensus 327 sd~f~~v~ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~--~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHG--PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CccchHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccC--hHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 54345667889999999999 88888888999999988765432 22334333 335555555544322 134455
Q ss_pred HHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCCh-------HHH--HHHHHHHHHHHHhhHhHhhh------cCC
Q 001945 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEP-------NTR--HQAIQIISWLAKYKYNSLKK------HKL 289 (992)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~-------~~r--~~a~~~l~~l~~~~~~~~~~------~~~ 289 (992)
.+..+..+....+-.+...+. +|...+..++...+... -.| ....+....+++..|..-.. .-+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 556666665555544443332 22222222222111110 001 00111111111111100000 000
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH
Q 001945 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (992)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 369 (992)
..++++..-.++-.|.+ +-..|..+..+ ..++..... +.-.......+.-...+=..+...-+
T Consensus 484 ~~~~~n~~~~~~~~~~d--~~~s~~~~~~~---~~ri~~q~~------------~~~~t~~~~~dkl~~~~r~~~l~nqp 546 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRD--DRGSWHTYTNI---DSRIIEQIN------------EDTGTSRKQQDKLNGSAREGLLKNQP 546 (1051)
T ss_pred hcccccccccccccCcc--ccccccccchh---hhhhhhhhc------------cCcccchhhhhhcCCchhhhhhhcCH
Confidence 11111111111111111 11223222211 111111100 00000001111111112222344556
Q ss_pred HHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHH-hhh-hhHHHH-HHHhcccCChHHHHHHHHHHHH
Q 001945 370 EWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIV-SHY-ESVLPC-ILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~-~~ll~~-l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
+.+..+...++|.+.+... .-++.||+.++.+|.++..+...++. ..+ ..-+.. +...+...+.+|-..|+....-
T Consensus 547 el~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEi 626 (1051)
T KOG0168|consen 547 ELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEI 626 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHH
Confidence 7777888899999999887 46899999999999999877654322 211 112222 2233444555666666666666
Q ss_pred HHHhhccccccch
Q 001945 446 FCEDMGEEILPFL 458 (992)
Q Consensus 446 l~~~~~~~~~~~~ 458 (992)
+++.+++.+.+++
T Consensus 627 LmeKlpd~F~~~F 639 (1051)
T KOG0168|consen 627 LMEKLPDTFSPSF 639 (1051)
T ss_pred HHHHhHHHhhhhH
Confidence 6666666555544
No 103
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.21 E-value=0.00013 Score=74.72 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=144.8
Q ss_pred HHhhcC-CCChhHHHHHHHHHHHh-HhhhcHHHHhhhhhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhccccccchH
Q 001945 383 VLGALR-DPEQFVRGAASFALGQF-AEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (992)
Q Consensus 383 l~~~l~-d~~~~vr~~a~~~l~~l-~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 459 (992)
.+..++ +....=|..|..-|-.+ ++.-..-..+|+..++-.+++.+.| .+...+..|+..|..++++-+..+..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333444 33444556666534333 4332223456889999999999998 66778889999999999998888888999
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHH-HHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh
Q 001945 460 PLMGKLLAALENSPRNLQETCMSAIGS-VAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (992)
Q Consensus 460 ~l~~~l~~~l~~~~~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 538 (992)
..+..++..-.+++.++-..|-++... ++...+.. .+..+..++...+++.. ..++.++..+...+..+
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~---~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRA---VAVIKMLTKLFERLSAE 440 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHH---HHHHHHHHHHHhhcCHH
Confidence 888888888888777665555555444 44433321 22233333433333321 14677888888888888
Q ss_pred hccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc-cCccCchhhhhHHHHh
Q 001945 539 RMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFS 594 (992)
Q Consensus 539 ~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~-~~~~~~l~~i~~~l~~ 594 (992)
...+.++++++.++++.++.+..+|..+.-|+-.|....| +.+.||+.++-..-++
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~ 497 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLN 497 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHH
Confidence 8999999999999999999999999999999999999999 9999999886544443
No 104
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.022 Score=64.61 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhh---cCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHh
Q 001945 819 APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD---MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCK 895 (992)
Q Consensus 819 ~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~---~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~ 895 (992)
..++.+++.....+++...- ..|..|+.++..-+.. ......|.+++..|.++.++...++-+-+.|+.|+-.+..
T Consensus 798 v~iv~kIl~r~~~~LS~e~l-~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESL-RIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34455666666677776543 6788899888864433 2445778899999999999999999999999999999999
Q ss_pred hcCcch-hhHHHHHHHhhhhhhCCC----CCChhhHhhH-HHHHHHHHHhCCCCCC--------hhhHHHHHHhhCCCCC
Q 001945 896 NGGESA-LKYYGDILRGLYPLFGDS----EPDDAVRDNA-AGAVARMIMVNPQSIP--------LNQVLPVLLKVLPLKE 961 (992)
Q Consensus 896 ~~~~~~-~~~~~~~l~~l~~~l~~~----~~~~~~~~n~-~~~l~~l~~~~~~~~~--------~~~~l~~~l~~lp~~~ 961 (992)
+.|+-+ +.+..++++.+...+.+. ...+.-.+.+ ...=.+++...+..++ +..+.....-.+-...
T Consensus 877 ~sgDFv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~ 956 (1014)
T KOG4524|consen 877 YSGDFVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQ 956 (1014)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcC
Confidence 999743 223444454444333321 0001101111 1112223333333322 3444444444444445
Q ss_pred cHHhhHHHHHHHHHHHhhcCcccc
Q 001945 962 DFEESMAVYNCISTLVLSSNPQLF 985 (992)
Q Consensus 962 d~~e~~~~~~~l~~l~~~~~~~~~ 985 (992)
+.+--+.++..+..++..++|+.+
T Consensus 957 ~q~Lqe~~~s~F~~~V~~ekp~~i 980 (1014)
T KOG4524|consen 957 PQVLQEIARSCFLDLVPVEKPQRI 980 (1014)
T ss_pred hHHHHHHHHHHHHHHhccCCCccc
Confidence 554455666777777776665543
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.006 Score=59.65 Aligned_cols=339 Identities=17% Similarity=0.195 Sum_probs=182.4
Q ss_pred HHHHH---HHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhH-HHHH
Q 001945 133 EHREV---ALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSIL 208 (992)
Q Consensus 133 ~~~~~---al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll 208 (992)
++|+. ...||..+...... ....+.+.+-++.+|.. ++..|+..+++.++.+++.++.+. +......+ ..++
T Consensus 55 nhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLia-ddasVKiLackqigcilEdcDtna-VseillvvNaeil 130 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNA-VSEILLVVNAEIL 130 (524)
T ss_pred cccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhh-HHHHHHHhhhhHH
Confidence 45554 56666666654332 23456788889999998 899999999999999998875332 22111111 2344
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH-------HHHHhhCCCCChHHHHHHHHHHHHHHHhhH
Q 001945 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF-------SLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (992)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~-------~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (992)
..+..++..++.++...+.+.+..++... ..+..+++- +..++. ..++-.|...++++..+...+|
T Consensus 131 klildcIggeddeVAkAAiesikrialfp-----aaleaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSiSp 203 (524)
T KOG4413|consen 131 KLILDCIGGEDDEVAKAAIESIKRIALFP-----AALEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSISP 203 (524)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcH-----HHHHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhcCH
Confidence 44445666788899999999998876431 111111110 000000 1144567777777777766655
Q ss_pred hHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHH-cchhchH--HHHHHHHhhhc--CCChhhHHH
Q 001945 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN-LAKHVFP--PVFEFASVSCQ--NASPKYREA 356 (992)
Q Consensus 282 ~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~-~~~~~~~--~~~~~l~~~l~--~~~~~~r~~ 356 (992)
.....- --..++..+..-|...+| .-++....+....++.. -|.+.++ .+++.+...+. +.++-.+.-
T Consensus 204 esanec-kkSGLldlLeaElkGteD------tLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr 276 (524)
T KOG4413|consen 204 ESANEC-KKSGLLDLLEAELKGTED------TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR 276 (524)
T ss_pred HHHhHh-hhhhHHHHHHHHhcCCcc------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH
Confidence 432211 011344444444444332 13343444444444432 2233332 24444444442 345666666
Q ss_pred HHHHHHHHhhc------CHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH-HH-HhhhhhHHHHHHHhc
Q 001945 357 AVTAIGIISEG------CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EI-VSHYESVLPCILNAL 428 (992)
Q Consensus 357 al~~l~~i~~~------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~~~ll~~l~~~l 428 (992)
++..++.+... .++.+-+-+...+...+..+...+|....+|+.++|.+...... ++ ...-+.-...++...
T Consensus 277 almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllara 356 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARA 356 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHH
Confidence 77777766543 23333344455566666777778888999999999999876532 11 112222333444433
Q ss_pred ccCC-hHHHHHHHHHHHHHHHhh---cccccc----------chH--------HHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 429 EDES-DEVKEKSYYALAAFCEDM---GEEILP----------FLD--------PLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 429 ~~~~-~~v~~~a~~~l~~l~~~~---~~~~~~----------~~~--------~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
.|.+ ..-+..+..+|..+.... ++.+.. +++ .-+..+...++.+.++++..++..+..
T Consensus 357 fdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA 436 (524)
T KOG4413|consen 357 FDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA 436 (524)
T ss_pred hcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 3333 222344555555554332 111111 111 112233444556677888888888777
Q ss_pred HHH
Q 001945 487 VAA 489 (992)
Q Consensus 487 l~~ 489 (992)
++.
T Consensus 437 iaa 439 (524)
T KOG4413|consen 437 IAA 439 (524)
T ss_pred HHc
Confidence 764
No 106
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.029 Score=65.09 Aligned_cols=166 Identities=16% Similarity=0.165 Sum_probs=108.1
Q ss_pred HHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCC
Q 001945 798 VIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELAS 877 (992)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 877 (992)
.+..++.=+++.++-. -+.|...=+|.++..+..+..+.+|..++-.+||+.-.++.-+.|| -+.+...+.|
T Consensus 938 ~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~----T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 938 ELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW----TEHLYRRLRD 1009 (1251)
T ss_pred HHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh----hHHHHHHhcC
Confidence 4554444445554432 2346667778888888766666899999999999887777655555 6667788999
Q ss_pred CChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhC
Q 001945 878 PDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVL 957 (992)
Q Consensus 878 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~~~~~~l~~~l~~l 957 (992)
+++.||.+|.-.+..++.+.--.+..+++..- -.|.+ +++.+++-|=+-+ +=+..-++. +-+++|-++++|
T Consensus 1010 ~~~~vRkta~lvlshLILndmiKVKGql~eMA----~cl~D--~~~~IsdlAk~FF-~Els~k~n~--iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILNDMIKVKGQLSEMA----LCLED--PNAEISDLAKSFF-KELSSKGNT--IYNLLPDILSRL 1080 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhcccHHHHH----HHhcC--CcHHHHHHHHHHH-HHhhhcccc--hhhhchHHHHhh
Confidence 99999999999999999775444455554433 34444 3344443222222 212222222 456777777777
Q ss_pred CCC-CcHHhhHHHHHHHHHHHhhc
Q 001945 958 PLK-EDFEESMAVYNCISTLVLSS 980 (992)
Q Consensus 958 p~~-~d~~e~~~~~~~l~~l~~~~ 980 (992)
.-. -+++--+.+.++|..+|...
T Consensus 1081 s~~~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1081 SNGNLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred ccCcccchhhHHHHHHHHHHhccc
Confidence 443 35667788889998888765
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.018 Score=62.57 Aligned_cols=314 Identities=13% Similarity=0.154 Sum_probs=170.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhhh-hhhcccccHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHhhcccCChhhHH
Q 001945 121 PFLFQFSQSEQEEHREVALILFSSLTET-IGQTFRPHFADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (992)
Q Consensus 121 ~~l~~~l~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~i~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (992)
..+..-+.+.++.....|+.+++.+-+. +.+.+. .+ +.+.|.+ +..+-||..|+-|+..+.+..++-.
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~---~D----I~KlLvS~~~~~~vkqkaALclL~L~r~spDl~--- 183 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFA---DD----IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV--- 183 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhh---hh----hHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---
Confidence 3344445566778888899998887543 222222 22 2344443 2567799999999999988765421
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCC-----------hHHHH
Q 001945 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLE-----------PNTRH 267 (992)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~-----------~~~r~ 267 (992)
.-..+...++ +++.+.+-.+...+...+..++.+.++.....++.-+..+..++...+.+ +....
T Consensus 184 ~~~~W~~riv----~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 184 NPGEWAQRIV----HLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred ChhhHHHHHH----HHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 1122333333 34444444455556666666666666655555554444443333222211 22222
Q ss_pred HHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCC---chHHH-HHHHHHHHHHHcc--hhchHHHHHH
Q 001945 268 QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDL---APDRA-AAEVIDTMALNLA--KHVFPPVFEF 341 (992)
Q Consensus 268 ~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~---~~~~~-a~~~l~~l~~~~~--~~~~~~~~~~ 341 (992)
..+.+|..+ |.. .+..--..+.+++-..|....+.....+- ...++ ..+++. ++.++. .+.+......
T Consensus 260 Kl~rlLq~~----p~~-~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e~~ll~~~~~~ 333 (938)
T KOG1077|consen 260 KLLRLLQIY----PTP-EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSEPELLSRAVNQ 333 (938)
T ss_pred HHHHHHHhC----CCC-CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCcHHHHHHHHHH
Confidence 222222211 100 00000011111111122211110000000 11111 111221 223333 4455556666
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcC--HHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGC--AEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~--~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
+.+++.+.....|+-|+..+..++..- -+.++.| ...++..|+ +++..||..|...|-.+|..- ...
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~~------Nak 403 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDVS------NAK 403 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhchh------hHH
Confidence 667788888899999999988887642 2444444 455666777 888999999999999998763 234
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHH
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGK 464 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 464 (992)
.++..+++.+...+..+|+....-+.-+.+.+.....=|.+-+++.
T Consensus 404 ~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqL 449 (938)
T KOG1077|consen 404 QIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQL 449 (938)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 5777888888878888888877777777777765555555544443
No 108
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.18 E-value=0.066 Score=68.86 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhC----------CCCcHHHH---HHHHhcCCChhHHHHHHHHHHHhhhhcccCCC
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLAK----------DPQVVPAL---VQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~~----------~p~~~~~l---~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 72 (992)
.+....+.+.+...+.+|...+..+-. .|.|...+ +..+.++.....+.-++.+....+.-.|..-.
T Consensus 8 ~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 87 (2341)
T KOG0891|consen 8 KQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEHD 87 (2341)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcccc
Confidence 444555566666677777777755421 12121111 11122222333332222222222211155444
Q ss_pred HHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCC--CCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 73 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
.-.-..+.+.+..++.+ .+..+-...+..++.++..... ......-...+.+++.+...--+..|......+..+.|
T Consensus 88 ~~~~s~~~n~l~~l~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P 166 (2341)
T KOG0891|consen 88 RKNISRLANYLRYLLPS-NDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVP 166 (2341)
T ss_pred cchhHhHHHHHHHhhcc-CChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCc
Confidence 43444555566555554 5777778888888887753321 01223334555666644444556788888888888888
Q ss_pred hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccC
Q 001945 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (992)
Q Consensus 151 ~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (992)
..+.+++..++.-+.....+ +++.+|..|+.++........
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~-~~~~i~~~a~~al~~~~~~~~ 207 (2341)
T KOG0891|consen 167 TFFYPYVNKFFKNIFAALRD-PKPAIRLQACSALHAVLSSLA 207 (2341)
T ss_pred HHHHHHHHHHHHHHHHhccC-CChhhhHHHHHHHHHHHhhhh
Confidence 88888889999888888898 999999999998877765543
No 109
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.17 E-value=9.1e-06 Score=71.94 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=90.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP 456 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 456 (992)
.+++.+...+.++++.+|..++++++.++...++....... .++|.+++.+.+++++++..++++|.+++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36788888889999999999999999999875443334443 89999999999999999999999999998765432222
Q ss_pred ch-HHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 457 FL-DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 457 ~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
+. ..+++.+...+.+.+..+++.++.+++.++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22 347888888999889999999999998775
No 110
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.15 E-value=1.1e-05 Score=74.54 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=94.7
Q ss_pred CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh----------------cccc
Q 001945 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ----------------TFRP 155 (992)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~----------------~~~~ 155 (992)
++.||+++|.+++.++.+++|. .||++++.+.+.+++ ++.....++.+|..+.+.+.+ .+..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 3679999999999999999995 899999999999987 467788899999998887653 1234
Q ss_pred cHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001945 156 HFADMQALLLKCLQDETS---NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (992)
..+.+++.+.+++....+ ..+...+++|+.+++.+.+.. .. .+ ..+++.+.+.+.. ++.+..|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-~i---~~--~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-LI---IN--SNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-HH---HS--SSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-Hh---cc--HHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 566788888888875232 888999999999999987421 11 11 1255555555533 34566777664
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.018 Score=60.89 Aligned_cols=454 Identities=10% Similarity=0.063 Sum_probs=219.9
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCC-hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCCh
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ 392 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 392 (992)
..|.+.-.++..++... ++++- ....+++-++... --.|-.|+..|-.+..+.. ...+=..+-+++-++++
T Consensus 80 ~Lrq~VY~aIkelS~~t-edvlm-~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~t------v~~~er~l~~a~Vs~~~ 151 (898)
T COG5240 80 YLRQCVYSAIKELSKLT-EDVLM-GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGET------VYDFERYLNQAFVSTSM 151 (898)
T ss_pred HHHHHHHHHHHHHhhcc-hhhhH-HHHHHHHhhccCCccccccHHHHHHHHhcCcch------hhhHHHHhhhhccccch
Confidence 45555555555544322 22221 1222333333333 3567778888887777622 22333445566678899
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC------------ChHHHHHHHHHHHHHHHhhccccccchHH
Q 001945 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE------------SDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 460 (992)
.+|.+|+-.--.+...-......+....-.+++..-+.| ++-.+.+|+..|..+-+.- ..
T Consensus 152 a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d--------km 223 (898)
T COG5240 152 ARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD--------KM 223 (898)
T ss_pred hhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc--------HH
Confidence 898887655444433322333344444444444433222 2445677777776653211 11
Q ss_pred HHHHHHHHhcCCCHhHHHH-----HHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHH-h
Q 001945 461 LMGKLLAALENSPRNLQET-----CMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAE-S 534 (992)
Q Consensus 461 l~~~l~~~l~~~~~~v~~~-----a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~-~ 534 (992)
.+-.+.+.+..+. .++.+ ...++..+.. .=.+++.++.|+|...+....+ ...- .+-..+..++. .
T Consensus 224 a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~----~n~q~~~q~rpfL~~wls~k~e--mV~l-E~Ar~v~~~~~~n 295 (898)
T COG5240 224 AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLK----ENSQALLQLRPFLNSWLSDKFE--MVFL-EAARAVCALSEEN 295 (898)
T ss_pred HHHHHHHHhhccc-ccccchhheehHHHHHHHHH----hChHHHHHHHHHHHHHhcCcch--hhhH-HHHHHHHHHHHhc
Confidence 2233444444332 22211 1222222222 1234566777777777654321 1111 12222233221 2
Q ss_pred hchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhc
Q 001945 535 VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENI 614 (992)
Q Consensus 535 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 614 (992)
+|+ .++++.++.+...++......|-++++.+..++...+..+.-.-+.+ +.|++.
T Consensus 296 v~~----~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev-EsLIsd------------------- 351 (898)
T COG5240 296 VGS----QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV-ESLISD------------------- 351 (898)
T ss_pred cCH----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH-HHHhhc-------------------
Confidence 333 23455556555556666667788899999998887665432111111 011100
Q ss_pred ccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHH
Q 001945 615 NGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALK 694 (992)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~ 694 (992)
+.|..+..++..+.+. .-..-+..++..+...+.+..++-+.-+..++-
T Consensus 352 ----------------------------~Nr~IstyAITtLLKT---Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~r 400 (898)
T COG5240 352 ----------------------------ENRTISTYAITTLLKT---GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALR 400 (898)
T ss_pred ----------------------------ccccchHHHHHHHHHc---CchhhHHHHHHHHHHHHHhhccCceEEeHHHHH
Confidence 0122333334333322 222334444555555544444454555555554
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhh
Q 001945 695 NILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLRE 774 (992)
Q Consensus 695 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 774 (992)
.+.-.+ |..-..+++. |...+.++..-+....+.+++.+.+...+. .-+..+..+...+.+
T Consensus 401 sLsl~F----------p~k~~s~l~F----L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~-----skEraLe~LC~fIED 461 (898)
T COG5240 401 SLSLLF----------PSKKLSYLDF----LGSSLLQEGGLEFKKYMVDAISDAMENDPD-----SKERALEVLCTFIED 461 (898)
T ss_pred HHHhhC----------cHHHHHHHHH----HHHHHHhcccchHHHHHHHHHHHHHhhCch-----HHHHHHHHHHHHHhh
Confidence 443322 1222233333 333444555666666777777777765431 112222333333332
Q ss_pred hhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCC--ChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHH
Q 001945 775 ESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP--HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEV 852 (992)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~ 852 (992)
. + ..+ -+.+.++.+.+.-+. .-..|+..++..++ + .+. -+|+.|+.+|+.+
T Consensus 462 c---e---------------y~~----I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--L--EN~-ivRsaAv~aLskf 514 (898)
T COG5240 462 C---E---------------YHQ----ITVRILGILGREGPRAKTPGKYVRHIYNRLI--L--ENN-IVRSAAVQALSKF 514 (898)
T ss_pred c---c---------------hhH----HHHHHHHHhcccCCCCCCcchHHHHHHHHHH--H--hhh-HHHHHHHHHHHHh
Confidence 1 1 111 133445555554333 22335555555432 2 233 4899999999876
Q ss_pred HhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 001945 853 ARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELC 894 (992)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~ 894 (992)
.-....... ...+...+-.++.|.|.+||..|.+.+..+=
T Consensus 515 ~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 544333222 2345555556788999999999999998875
No 112
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.027 Score=61.80 Aligned_cols=328 Identities=14% Similarity=0.080 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHh-ccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 001945 475 NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV-LTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (992)
Q Consensus 475 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (992)
.-.+.|+..++++... -....|+...+-..+...+. .-.++.--++.++++.++.+..-+.. ...+-++.+...+
T Consensus 431 rq~egalr~lasi~s~-itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~n 506 (970)
T COG5656 431 RQAEGALRLLASIKSF-ITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHN 506 (970)
T ss_pred HHHhhHHHHHHHHHHH-hccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHH
Confidence 3456777777777662 22223322221111111111 11223334678899999887433321 1234567777788
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHc--ccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcc
Q 001945 554 GFGLEFSELREYTHGFFSNIAGVL--EDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERS 631 (992)
Q Consensus 554 ~l~~~~~~~r~~~~~~~~~i~~~~--~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (992)
++++++-+++-.+..++.-+.... .+.+..++|.++..+++..+.- ++
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f-----ei------------------------- 556 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF-----EI------------------------- 556 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc-----cc-------------------------
Confidence 888888888888878887776554 3567788888888888654311 00
Q ss_pred ccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHh----c----ccCC------ChhHHHHHHHHHHHHH
Q 001945 632 VRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVR----H----ASYF------HEDVRYQAVFALKNIL 697 (992)
Q Consensus 632 ~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~----~----~~~~------~~~vr~~a~~~l~~l~ 697 (992)
..-..++..++....+.+.||.+++...+.+ + .... .++-..+|...|..+
T Consensus 557 --------------D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~- 621 (970)
T COG5656 557 --------------DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTI- 621 (970)
T ss_pred --------------hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHH-
Confidence 1112344556667778888887777766554 2 1111 112222333333333
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhh
Q 001945 698 TAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST 777 (992)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 777 (992)
....-+....|..++.....+.|.+.-++..+ -.+...++++.+..+ ......+..++..++..+.+-.
T Consensus 622 ---~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~------tf~skeI~pimwgi~Ell~~~l- 690 (970)
T COG5656 622 ---ESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGY------TFMSKEIEPIMWGIFELLLNLL- 690 (970)
T ss_pred ---HHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhh------hHHHHHhhhhhhHHHHHHHhcc-
Confidence 22222334466677766666666665555433 223333333333211 1223333445555555444321
Q ss_pred hcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHH---HHHHHHHHHHHhhcCCCC-ccchhhHHHHHHHHH
Q 001945 778 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAP---IFAKLFDPLMKFAKSSRP-LQDRTMVVATLAEVA 853 (992)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~-~~~r~~al~~l~~~~ 853 (992)
..+ .+ ..-.+.++.++..+..+-|..|.. |...+...+...+...+. -..+..+..++-.++
T Consensus 691 --~~~---------~t---~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~ 756 (970)
T COG5656 691 --IDE---------IT---AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI 756 (970)
T ss_pred --ccc---------ch---hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence 110 01 123445677788888776555542 555556666666654433 235667777777776
Q ss_pred hhcCC-chhhcHhhhHHHHHHhcC
Q 001945 854 RDMGS-PIAAYVDRVMPLVLKELA 876 (992)
Q Consensus 854 ~~~~~-~~~~~~~~~~~~ll~~l~ 876 (992)
-..+. ...+|+|-++..+-..+.
T Consensus 757 Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 757 LNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred HHccchhHHhhhHHHHHHHhhhhh
Confidence 66655 456677766666654443
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0056 Score=59.84 Aligned_cols=252 Identities=14% Similarity=0.162 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHc-chhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH-HHHHHh----HHHHHHHHHhhcCCCCh
Q 001945 319 AAEVIDTMALNL-AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEK----LESVLHIVLGALRDPEQ 392 (992)
Q Consensus 319 a~~~l~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~----l~~i~~~l~~~l~d~~~ 392 (992)
...|+.++.... |..+.|.+++-++..+..++..++--++..++++.+.|. ..+... -..+++.++.++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 667888877654 478889999999999999999999999999999999885 222222 25789999999999999
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHH-HHhc-ccCChHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHH
Q 001945 393 FVRGAASFALGQFAEYLQPEIVSHYE-SVLPCI-LNAL-EDESDEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAA 468 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l-~~~l-~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~ 468 (992)
.|..+|...+.+++.+- ..+...++ .++..+ +..+ ...+.-+|.+....+..+....+..... -...++..|..-
T Consensus 143 eVAkAAiesikrialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 99999999999998763 11111111 111111 1111 1223456666777777666544432221 123566666666
Q ss_pred hcC-CCHhHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHhccC-hhhhHhHHHHHHHHHHHHHhhchhhccC---
Q 001945 469 LEN-SPRNLQETCMSAIGSVAAAA-EQAFIPYAERVLELLKIFMVLTN-DEDLRSRARATELLGLVAESVGRARMEP--- 542 (992)
Q Consensus 469 l~~-~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~--- 542 (992)
+.. .+.-++..+++....++..- +..|.+- ..++..+.+++.-.+ ++...+| .+...++.+|++.+-.
T Consensus 222 lkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfr-----almgfgkffgkeaimdvse 295 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFR-----ALMGFGKFFGKEAIMDVSE 295 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHH-----HHHHHHHHhcchHHhhcCH
Confidence 665 46678889999888887643 2333321 336777888876543 3333332 2333344445433222
Q ss_pred -----ChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHc
Q 001945 543 -----ILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVL 577 (992)
Q Consensus 543 -----~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~ 577 (992)
.+...++..++.+..++++..+.++.++|.+....
T Consensus 296 eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 296 EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 22334444555666778999999999999887655
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.10 E-value=6.7e-06 Score=59.99 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHH
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (992)
|.||..|+++||.++...++...++.+.++|.+...+.|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999999998887888889999999999999999999999999999864
No 115
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.029 Score=60.66 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=118.7
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 3 QSLELLLIQFL-MPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 3 ~~l~~ll~~~~-s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
.+++.+...+. +.|+..|-+||..|.++..+|+.+..+-.++.++..|.-..+|+..|-+.+..+- .++.+.+-.|++
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 45667777774 6799999999999999999999999999999888888888999999888876663 789999999999
Q ss_pred HHHHHHhhc---CCHhHHHHHHHHHHHHHcccCCCC-----CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhh
Q 001945 82 SLIESITLE---HSAPVRRASANVVSIIAKYAVPAG-----EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (992)
Q Consensus 82 ~ll~~l~~~---~~~~vr~~~~~~l~~i~~~~~~~~-----~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~ 149 (992)
-+++.+... -.+.|...+++.++++.+..+-.. .+.+.+..+...++.++.+....++.++..+....
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence 999999862 257888999999999998654322 24566777778888777777778888888777554
No 116
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.035 Score=61.46 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHccc-----CCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCC
Q 001945 97 RASANVVSIIAKYA-----VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (992)
Q Consensus 97 ~~~~~~l~~i~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 171 (992)
+.++++++.+.-.. +++.+-.+++-.+..+.++.+...|......+.++.....+. --+...+.+-.+.
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-----iivtsslmkD~t~- 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-----IIVTSSLMKDMTG- 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-----hhhhHHHHhhccC-
Confidence 34555666544321 222344567777778888888877777666666654322211 1123444444444
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 001945 172 TSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~ 191 (992)
.++..|..|+++|.++....
T Consensus 112 ~~d~yr~~AiR~L~~I~d~~ 131 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDGT 131 (865)
T ss_pred CCcchhHHHHHHHHhhcCcc
Confidence 67788999998888776543
No 117
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.06 E-value=0.0041 Score=67.28 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=140.0
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-----CCHhHHHHHHHHHHH
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-----SPRNLQETCMSAIGS 486 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~v~~~a~~~l~~ 486 (992)
++.++...++..|+..+..+...--+...+|+.+++....+.+.|+...+++.|...+.. +++..-...+++++.
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 455677788888888887543322355778888888888888999999999988887642 367788899999999
Q ss_pred HHHHhhc----cCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchh
Q 001945 487 VAAAAEQ----AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSEL 562 (992)
Q Consensus 487 l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 562 (992)
++....+ .+..+-+.++|.+..++++.-. +.-..+++.++.+...-....+.+....+++.++.-.--+...-
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~---EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn 175 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ---EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN 175 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T---TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC
Confidence 9887542 3456778899999999976422 23346788888877654423455555566666554211001112
Q ss_pred hHHHHHHHHHHHHHcccCcc--CchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecc
Q 001945 563 REYTHGFFSNIAGVLEDGFA--QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTG 640 (992)
Q Consensus 563 r~~~~~~~~~i~~~~~~~~~--~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (992)
-....+.+..+.+..+..+. +++..++...-+.+..+.
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~---------------------------------------- 215 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA---------------------------------------- 215 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT----------------------------------------
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC----------------------------------------
Confidence 24455566666666665543 555655554433332210
Q ss_pred hhhhHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHhcccC
Q 001945 641 VLDEKAAATQALGLFALHTKS-SYAPFLEESLKILVRHASY 680 (992)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 680 (992)
.-..++..|..+..+++. .+.||+++++..+...+..
T Consensus 216 ---~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 216 ---NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp ---CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 013477889999999875 6899999999998887753
No 118
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.06 E-value=0.012 Score=63.56 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=107.7
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHH-HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHH
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCI 424 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l 424 (992)
...|...+.||+.++-.++......-. ..-.++...+++.+.||+..|..++.-++..+.-.+++--..++ ...+..+
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 345677888999888776653211000 22346777788888999999999999999999988866433444 5788999
Q ss_pred HHhcccCChHHHHHHHHHHHHHHHhhccc--cccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH
Q 001945 425 LNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 425 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 490 (992)
...+.++.+.+|..+.++|..+.-.+.+. ..++..--.+.+..+.+++++.|+++++..+.++...
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999988776543 3344444555666777889999999999998887643
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.033 Score=60.63 Aligned_cols=287 Identities=13% Similarity=0.191 Sum_probs=149.2
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 001945 202 EFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (992)
Q Consensus 202 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 280 (992)
+++..+++.+..=+.+.++.....|+.++..+.++.- ..+..-++ .++-+++..+-+|..+--++..+.+..
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~-------KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP-------KLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH-------HHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 3444555555555556777777888888887766421 11222222 222344446778888777777888777
Q ss_pred HhHhhhcCChHHHHHHHhh--------------hhccCCCCCCCCCCchHHHHHHHHHHH---HHHcchh-------chH
Q 001945 281 YNSLKKHKLVIPILQVMCP--------------LLAESNEAGEDDDLAPDRAAAEVIDTM---ALNLAKH-------VFP 336 (992)
Q Consensus 281 ~~~~~~~~~~~~il~~l~~--------------~l~~~~~~~~d~~~~~~~~a~~~l~~l---~~~~~~~-------~~~ 336 (992)
|..+....+..+++..+-. .+....+ + ....+...++.++ +...+.+ .+|
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p----~--~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP 253 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP----E--SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVP 253 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC----H--HHhhhHHHHHHHHHHHHhhcccchhhceeecCC
Confidence 7766555566666554310 0111110 0 1111122222222 2222210 001
Q ss_pred ------HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH---HH--H-H----------------------HhHHHHHHH
Q 001945 337 ------PVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EW--M-K----------------------EKLESVLHI 382 (992)
Q Consensus 337 ------~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---~~--~-~----------------------~~l~~i~~~ 382 (992)
.++..+...-.-.|...|.....++..+..... .. . . ..+..-+..
T Consensus 254 ~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~ 333 (938)
T KOG1077|consen 254 APWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQ 333 (938)
T ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 111111111122344455555555555443221 00 0 0 011222333
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchHHH
Q 001945 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (992)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l 461 (992)
+-+.+.+..+.+|+-|+..+..++..- .. .+....-...++..|. +.+..+|..|+..|..+++... ...+
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~-~s-~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N------ak~I 405 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSE-FS-IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN------AKQI 405 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhcc-ch-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh------HHHH
Confidence 444445555566666655555554431 11 1111112445566666 6778899999999999886532 3457
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHH
Q 001945 462 MGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF 509 (992)
Q Consensus 462 ~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~ 509 (992)
+..|++.+.+.+..+|+...-=++-+++....++.=|.+-++.++.-.
T Consensus 406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria 453 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA 453 (938)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence 777777777889999999888888888777666666666666555433
No 120
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.03 E-value=0.0003 Score=69.57 Aligned_cols=191 Identities=13% Similarity=0.164 Sum_probs=121.5
Q ss_pred HHHHHHHhhhc-CCChhhHHHHHHHHHHHhhcCH--HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 337 ~~~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
.-++.+...++ +.++..++.++.+++..+.... +.+.. -..++.+...+.++++.+|..|++++..++.....
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en-- 87 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN-- 87 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--
Confidence 33455555555 5688999999999999766432 22222 15688999999999999999999999999876432
Q ss_pred HhhhhhHHHHHHHhccc--CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 414 VSHYESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
....+..++.+++.+.. .+..+|..+..+|.++.-. ......+..-++.++.++..++..+|.+++.++..++...
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 22223334444443322 2568898999999888422 2222333445666677888889999999999999887642
Q ss_pred h---ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh
Q 001945 492 E---QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (992)
Q Consensus 492 ~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 538 (992)
. +-+. .+....+..++....+.+.. -+++..+..+...++++
T Consensus 166 ~~~~~Ll~---~q~~~~~~~Lf~~~~~~~~l--~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 166 DMTRELLS---AQVLSSFLSLFNSSESKENL--LRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHHh---ccchhHHHHHHccCCccHHH--HHHHHHHHHHHHhhCcc
Confidence 2 1111 12344445555543333333 24777777777766653
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00047 Score=76.16 Aligned_cols=233 Identities=17% Similarity=0.161 Sum_probs=170.3
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHH
Q 001945 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAE 500 (992)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 500 (992)
+...+..+.|+.+.+|..+...+..+++.-...-......++......+.+.+..+--+|+..+.+++... -+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PE 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------ch
Confidence 45556677788888999999999999985543334456678888999999999999999999888888863 34
Q ss_pred HHHHHHHHHHhc-cChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc
Q 001945 501 RVLELLKIFMVL-TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (992)
Q Consensus 501 ~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~ 579 (992)
.++|.+.....+ .+......|-+.-+++..++++.|. .+..|...+++.++.+..+++...|-+++..+|.+|.....
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 566766664433 2222122333456888888888876 77788889999999999887777899999999999998876
Q ss_pred CccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh
Q 001945 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (992)
Q Consensus 580 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~ 659 (992)
....++..++..+++....+ +...+|++|...+..+...+
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d----------------------------------------~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTD----------------------------------------GSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred hhhHHHHHHHHHHHHHHccC----------------------------------------CchhhHHHHHHHHHHHHhcc
Confidence 66667777777777654421 12247999999999998888
Q ss_pred cccccchH----HHHHHHHHhccc-CCChhHHHHHHHHHHHHHHHHH
Q 001945 660 KSSYAPFL----EESLKILVRHAS-YFHEDVRYQAVFALKNILTAAH 701 (992)
Q Consensus 660 ~~~~~~~~----~~~~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~ 701 (992)
|..+.|+. -+....+..... +.++.+|..|..++..+-.+..
T Consensus 921 g~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 921 GEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 88888854 333334444433 4667788888888877765544
No 122
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.02 E-value=0.003 Score=67.04 Aligned_cols=349 Identities=14% Similarity=0.124 Sum_probs=184.5
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhc---ccCCCHH--HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc
Q 001945 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH---WAKLSPQ--LKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (992)
Q Consensus 34 p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~---~~~~~~~--~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~ 108 (992)
|.+...+++++.+...+.+.++..+++...+... +..+-+. .....-..++..|.. .+..+...++.+++.++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHh
Confidence 5678889999888788889999998888777542 1111000 001122345566664 789999999999999986
Q ss_pred ccCCCCCCcc----hHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhcCCCC-ChHHHHHH
Q 001945 109 YAVPAGEWPD----LLPFLFQFSQSE-QEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDET-SNRVRIAA 180 (992)
Q Consensus 109 ~~~~~~~~~~----ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~-~~~vr~~a 180 (992)
.... ..-.. +.+.+...++++ +...+..++.++..+...-. ..+.. ...++.+...|+... +.+....+
T Consensus 131 ~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 131 FGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred cCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHHHHH
Confidence 5321 12222 333444444443 35677788888888764322 22211 113455555555423 56777777
Q ss_pred HHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc------chHHHHH-HHHHHHH
Q 001945 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVK-SIVHFSL 253 (992)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~l~-~li~~~~ 253 (992)
+-|+--+.-.. +..+...-.+++|.+++.+... ..+++..-++.+|.+++..... +....+. .+...+-
T Consensus 208 ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 208 IFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred HHHHHHHhccH-HHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence 76664443221 1111111235667777766543 3457777888888888875421 1111122 2222222
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhh-cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcch
Q 001945 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK 332 (992)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~ 332 (992)
.+...+-.|+++ ...++.+....+..-+.... ..|...+....+ + |++......+...=+..+.+
T Consensus 284 ~L~~rk~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L----~---------WSp~H~se~FW~EN~~kf~~ 349 (429)
T cd00256 284 SLEQRKYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRL----H---------WSPVHKSEKFWRENADRLNE 349 (429)
T ss_pred HHhcCCCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCc----c---------CCCCCCCchHHHHHHHHHHh
Confidence 222233334443 34445554443322111111 112222221111 2 22222222222222222221
Q ss_pred hchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHH--HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001945 333 HVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAE--WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (992)
Q Consensus 333 ~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (992)
.-+ .++..+.+.+ .+.|...-..||.=+|.++...|. .+...++ .-..+++.++++++.||+.|+.|++.+.
T Consensus 350 ~~~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 350 KNY-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cch-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111 2333333444 356677778899999999987643 2222222 3567888999999999999999998874
No 123
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.04 Score=60.60 Aligned_cols=403 Identities=14% Similarity=0.160 Sum_probs=209.7
Q ss_pred CCcchHHHHHHhhc-CCCHHHHHHHHHHHHHhh-hhhhh-cccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 115 EWPDLLPFLFQFSQ-SEQEEHREVALILFSSLT-ETIGQ-TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 115 ~~~~ll~~l~~~l~-~~~~~~~~~al~~l~~l~-~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
..|.++-.+....- +.+...+. -+..+.+++ +..++ .+-+.+--+.+.+.+=|++ |+.-+|-..++.++.+=+
T Consensus 53 ~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH-PNEyiRG~TLRFLckLkE-- 128 (948)
T KOG1058|consen 53 DLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH-PNEYIRGSTLRFLCKLKE-- 128 (948)
T ss_pred CchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccC-chHhhcchhhhhhhhcCc--
Confidence 56777766666543 33333333 333344433 33221 1222222345777788888 999999999888765322
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 001945 192 NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (992)
Q Consensus 192 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~ 271 (992)
.+++.++++.+..++.....-+|..|+-++..+.... .++-+-.+.++.-.+. .+.|+..++.|+-
T Consensus 129 ---------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeLi~~fL~----~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 129 ---------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPELIESFLL----TEQDPSCKRNAFL 194 (948)
T ss_pred ---------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHHHHHHHH----hccCchhHHHHHH
Confidence 2345556666667777788888988888887776652 2222233444443321 2347778888776
Q ss_pred HHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCCh
Q 001945 272 IISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASP 351 (992)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 351 (992)
.|..+-..... +|+...+. -...+++ .......+.+...+...+ ..-...+..+...+++.+.
T Consensus 195 ~L~~~D~ErAl-----~Yl~~~id----qi~~~~~-------~LqlViVE~Irkv~~~~p-~~~~~~i~~i~~lL~stss 257 (948)
T KOG1058|consen 195 MLFTTDPERAL-----NYLLSNID----QIPSFND-------SLQLVIVELIRKVCLANP-AEKARYIRCIYNLLSSTSS 257 (948)
T ss_pred HHHhcCHHHHH-----HHHHhhHh----hccCccH-------HHHHHHHHHHHHHHhcCH-HHhhHHHHHHHHHHhcCCc
Confidence 65444321110 01111110 0111111 222233333333333222 1112345555566667676
Q ss_pred hhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC
Q 001945 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431 (992)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 431 (992)
.+++-|...+-.+... +..+..-...++..+.+ .++-+|+.....-|..+... ....++.++-.++..|..+
T Consensus 258 aV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~k---esdnnvklIvldrl~~l~~~----~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 258 AVIFEAAGTLVTLSND-PTALKAAASTYIDLLVK---ESDNNVKLIVLDRLSELKAL----HEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred hhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHh---ccCcchhhhhHHHHHHHhhh----hHHHHHHHHHHHHHHcCcc
Confidence 6666555544444332 22222222333333322 23445665555555555422 2345667777788899999
Q ss_pred ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-------CCHhHHHHHHHHHHHHHHHhhccCcccHHHHHH
Q 001945 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-------SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLE 504 (992)
Q Consensus 432 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 504 (992)
+-.||..++...-.++..- -+++++..|.+-+.. .+.+.|...++++.+.+- .|..+...+++
T Consensus 330 dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav----~Fp~~aatvV~ 399 (948)
T KOG1058|consen 330 DLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV----KFPEVAATVVS 399 (948)
T ss_pred cccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh----cChHHHHHHHH
Confidence 9999998888777766542 233444444443332 234456666666655544 56667888999
Q ss_pred HHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC-CCCchhhHHHHHHHHHHHHHcc
Q 001945 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLE 578 (992)
Q Consensus 505 ~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~~~~~~~~i~~~~~ 578 (992)
.+.+.+...+.. .+-..+..+-..+ +.|...-..++..+++.+. -.+..+-+.+++.+|..|...+
T Consensus 400 ~ll~fisD~N~~------aas~vl~FvrE~i--ek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 400 LLLDFISDSNEA------AASDVLMFVREAI--EKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHhccCCHH------HHHHHHHHHHHHH--HhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 999888654432 1223333332222 1233333345555555443 1234555667777777776554
No 124
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0019 Score=71.52 Aligned_cols=216 Identities=17% Similarity=0.216 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHH
Q 001945 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA 342 (992)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 342 (992)
.-+|..++..+..+++.....-. .....++...+..+.+.+. .++-.+...+..+++..++.++|.+.+..
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~--~~~ekvl~i~ld~Lkdeds-------yvyLnaI~gv~~Lcevy~e~il~dL~e~Y 811 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATL--IQGEKVLAIALDTLKDEDS-------YVYLNAIRGVVSLCEVYPEDILPDLSEEY 811 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHHhcccCc-------eeeHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34577777777777764321111 1334567777777765433 66777888888899999998998888754
Q ss_pred HhhhcCC--ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhH
Q 001945 343 SVSCQNA--SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420 (992)
Q Consensus 343 ~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l 420 (992)
...-+.. +.+.|.+ .++..++...++....+.+.++...+++.+||+..-|.+++..+|.++....-...+.+.++
T Consensus 812 ~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEV 889 (982)
T ss_pred HhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4332222 3333333 78888888888888889999999999999999999999999999999987755555666667
Q ss_pred HHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchH----HHHHHHHHHhc-CCCHhHHHHHHHHHHHHHH
Q 001945 421 LPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLD----PLMGKLLAALE-NSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 421 l~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~ 489 (992)
+..++.... |.+..||.+|+..+..+....+..+.|++. +....+..... +++..++-.+-.|+-.+-.
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 666666554 667899999999999999988877777443 33344444333 3344556565555554433
No 125
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.91 E-value=0.00014 Score=68.70 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=95.9
Q ss_pred cchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHH-HHHHHhhhhhhCC
Q 001945 840 QDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYY-GDILRGLYPLFGD 918 (992)
Q Consensus 840 ~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~ 918 (992)
.+|..++.++||++...+.- ++..+|.+.+.|+|+++.||.+|+.++..++....-.+.+.+ ..++ ..+.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l----~~l~- 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL----KLLV- 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH----HHHc-
Confidence 57999999999999877654 455588888999999999999999999999987554444333 3333 3444
Q ss_pred CCCChhhHhhHHHHHHHHHHh-CCCCCChhhHHHHHHhhCCC--------CCcHHhhHHHHHHHHHHHh
Q 001945 919 SEPDDAVRDNAAGAVARMIMV-NPQSIPLNQVLPVLLKVLPL--------KEDFEESMAVYNCISTLVL 978 (992)
Q Consensus 919 ~~~~~~~~~n~~~~l~~l~~~-~~~~~~~~~~l~~~l~~lp~--------~~d~~e~~~~~~~l~~l~~ 978 (992)
++++.+++.|..++..+... .|+.+ ...+|..+..|.- ..+.++...+++++...+.
T Consensus 74 -D~~~~Ir~~A~~~~~e~~~~~~~~~i--~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 74 -DENPEIRSLARSFFSELLKKRNPNII--YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred -CCCHHHHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 46788999999999999988 56554 4455555544432 3567888899999999886
No 126
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.91 E-value=0.00067 Score=60.21 Aligned_cols=154 Identities=18% Similarity=0.312 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcC-CHhHHHHHHHHHHHHHccc--CCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhh-hhhhhcc
Q 001945 78 LVKQSLIESITLEH-SAPVRRASANVVSIIAKYA--VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT-ETIGQTF 153 (992)
Q Consensus 78 ~i~~~ll~~l~~~~-~~~vr~~~~~~l~~i~~~~--~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~-~~~~~~~ 153 (992)
.||..|+.+|..+. ....-+.++++++.++... ++++.|++|.+.+.+... .++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~-~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE-NEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc-cch---HHHHHHHHhCCchhhhhHH
Confidence 57888999998643 3456677777777776533 466899999988887653 222 67888999888 6677778
Q ss_pred cccHHHHHHHHHHhcCCCCChHH--HHHHHH-HHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHH
Q 001945 154 RPHFADMQALLLKCLQDETSNRV--RIAALK-AIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEI 229 (992)
Q Consensus 154 ~~~~~~i~~~l~~~l~~~~~~~v--r~~a~~-~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~~~ 229 (992)
.+.++.+++.+.+.|.++.+.++ ...|+. ++...+...+.+.....+.++++.+++.+.++...+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 89999999999999998443333 344443 33334555544444566888999999999888877766 677777777
Q ss_pred HHHHhc
Q 001945 230 FDELIE 235 (992)
Q Consensus 230 l~~l~~ 235 (992)
+..++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 766654
No 127
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.069 Score=59.27 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=67.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001945 67 HWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (992)
Q Consensus 67 ~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (992)
.-++++......+.-.+.+++++ .+...|+..-.++.++..... .---....+..-....++..|-.|+..|-.+.
T Consensus 53 qge~~~~~eate~ff~~tKlfQs-kd~~LRr~vYl~Ikels~ise---dviivtsslmkD~t~~~d~yr~~AiR~L~~I~ 128 (865)
T KOG1078|consen 53 QGEHFGETEATELFFAITKLFQS-KDVSLRRMVYLAIKELSKISE---DVIIVTSSLMKDMTGKEDLYRAAAIRALCSII 128 (865)
T ss_pred cccccchhhHHHHHHHHHHHHhh-cCHHHHHHHHHHHhhccccch---hhhhhhHHHHhhccCCCcchhHHHHHHHHhhc
Confidence 34456665666666666677775 889999988888887664321 11123333433355556677888887777765
Q ss_pred hhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhc
Q 001945 147 ETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (992)
Q Consensus 147 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (992)
.. .-...+-..+.+++-+ ..+.++.+|+-.-..+..
T Consensus 129 d~------~m~~~iery~kqaivd-~~~avSsaalvss~hll~ 164 (865)
T KOG1078|consen 129 DG------TMLQAIERYMKQAIVD-KNPAVSSAALVSSYHLLP 164 (865)
T ss_pred Cc------chhHHHHHHHHhHeec-cccccchHHHHHHhhhhc
Confidence 42 2233444555667777 777777766644444433
No 128
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.019 Score=60.09 Aligned_cols=268 Identities=17% Similarity=0.153 Sum_probs=152.7
Q ss_pred ccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 001945 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIFDEL 233 (992)
Q Consensus 155 ~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~l~~l 233 (992)
.....++..+.+-..+ ++..+|..|+.++++.+...++. ...+.+.++..+...+.++ +.++...++.+|..+
T Consensus 254 ~lL~s~~~~la~ka~d-p~a~~r~~a~r~L~~~as~~P~k-----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATD-PSAKSRGMACRGLGNTASGAPDK-----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMV 327 (533)
T ss_pred ccHHHHHHHHHHhccC-chhHHHHHHHHHHHHHhccCcHH-----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666677777777 88899999999999999986543 4567788888877777664 467888888888877
Q ss_pred hcCCc-cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001945 234 IESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (992)
Q Consensus 234 ~~~~~-~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~ 312 (992)
.+... .-+..++.++.-.+-+...+. +++.|..++..+..++...++..+. .|.+++...+.+++.+..+.
T Consensus 328 ~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~-~Fte~v~k~~~~lllhl~d~----- 399 (533)
T KOG2032|consen 328 LEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE-FFTEQVKKRLAPLLLHLQDP----- 399 (533)
T ss_pred HHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh-hhHHHHHhccccceeeeCCC-----
Confidence 66432 223333333333333334333 7889999999999998876554433 35565665555655543321
Q ss_pred Cch--HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh----h
Q 001945 313 LAP--DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG----A 386 (992)
Q Consensus 313 ~~~--~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~----~ 386 (992)
.+ ..+....+......+. ...+..++.+.+ +.+-. | ++.+....-.....+.+++.-.+.. .
T Consensus 400 -~p~va~ACr~~~~~c~p~l~---rke~~~~~q~~l-d~~~~-~------~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~ 467 (533)
T KOG2032|consen 400 -NPYVARACRSELRTCYPNLV---RKELYHLFQESL-DTDMA-R------FQAFYNQWCIQLNHIHPDILMLLLTEDQHI 467 (533)
T ss_pred -ChHHHHHHHHHHHhcCchhH---HHHHHHHHhhhh-HHhHH-H------HHHHHHHHHHHHhhhCHHHHHHHHHhchhh
Confidence 22 2222222221111221 122222222222 11110 1 1111111111122233333322222 2
Q ss_pred cCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 387 LRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 387 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
++..-+.||.++...-+.+.....+....+. ..+...+-....++-++++..+..++..+..
T Consensus 468 f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 468 FSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred eecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3344458888888887777777655544433 4455666667778889999999999987754
No 129
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00078 Score=72.10 Aligned_cols=249 Identities=17% Similarity=0.172 Sum_probs=163.0
Q ss_pred CCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH--H----HHHHhHHHHHHHHH
Q 001945 311 DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--E----WMKEKLESVLHIVL 384 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~----~~~~~l~~i~~~l~ 384 (992)
.|..+|..|.+++-.+++ |-.+-..+.....+.+.+++-.+|.+|+..+...+..++ . .-....+..+..+.
T Consensus 210 ~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC 287 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVC 287 (823)
T ss_pred CCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHH
Confidence 345789999999988877 544445667777888999999999999988888777652 1 11234678899999
Q ss_pred hhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHH------------------------------------------
Q 001945 385 GALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVL------------------------------------------ 421 (992)
Q Consensus 385 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll------------------------------------------ 421 (992)
..++|-+..||-.|.+++|.+...-..-+.+.+ .+++
T Consensus 288 ~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~ 367 (823)
T KOG2259|consen 288 RAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEE 367 (823)
T ss_pred HHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccc
Confidence 999999999999999999988654322111111 1111
Q ss_pred --------HHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 422 --------PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 422 --------~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
..++.++.|+--.||.+|+..+..++.+.+ .|...-+..|...+++....||..++.++..++....
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~- 442 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA- 442 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-
Confidence 234455555556788888888888875543 3566777888888888888999999999988877622
Q ss_pred cCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 494 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
.-+.-++.+...+... ...+|...-+.+.. ++.... .-+.-++..++.++.. .|.=|...+.|++.+
T Consensus 443 ----i~eeql~~il~~L~D~---s~dvRe~l~elL~~-~~~~d~----~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 443 ----IREEQLRQILESLEDR---SVDVREALRELLKN-ARVSDL----ECIDMCVAHLLKNLGK-YPQDRDEILRCMGRI 509 (823)
T ss_pred ----ecHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCCcH----HHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHH
Confidence 1122344444444332 22344433333332 211111 1233455556665542 355577888999998
Q ss_pred HHHccc
Q 001945 574 AGVLED 579 (992)
Q Consensus 574 ~~~~~~ 579 (992)
...-+.
T Consensus 510 GqnH~~ 515 (823)
T KOG2259|consen 510 GQNHRR 515 (823)
T ss_pred hccChh
Confidence 876553
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=6.2e-05 Score=61.90 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=66.8
Q ss_pred HHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 340 EFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 340 ~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
+.+.+.+ ++++|.+|..++.+++.+.. +..++.+...++|+++.||..|+++|+.+.. +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD----------P 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------H
Confidence 4455556 89999999999999994432 2668888888999999999999999998842 3
Q ss_pred hHHHHHHHhcccC-ChHHHHHHHHHHH
Q 001945 419 SVLPCILNALEDE-SDEVKEKSYYALA 444 (992)
Q Consensus 419 ~ll~~l~~~l~~~-~~~v~~~a~~~l~ 444 (992)
..++.+.+.+.++ +..||..|..+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4778888888765 4667998988874
No 131
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.86 E-value=0.0091 Score=61.07 Aligned_cols=353 Identities=16% Similarity=0.147 Sum_probs=185.5
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccC------CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc
Q 001945 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAK------LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (992)
Q Consensus 35 ~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~------~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~ 108 (992)
..+..++++++....+..-++..+++-..+...-.. .....+...-...+..|. ..++.+.+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHHH
Confidence 456677787766555566667777776665432111 111111222234566666 4788888888999998876
Q ss_pred ccC---CCCCCcchHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhc-CCCCChHHHHHHHHH
Q 001945 109 YAV---PAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL-QDETSNRVRIAALKA 183 (992)
Q Consensus 109 ~~~---~~~~~~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~vr~~a~~~ 183 (992)
... +.+...-....+...+++ .+...+..+..||..+...-.-...-...+-+.++...+ +...+.+++...+-|
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 421 112334456666666666 456777888888888764322111000111122233333 443677788877777
Q ss_pred HHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc--chHHHHHHH----HHHHHHHhh
Q 001945 184 IGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP--LLGDSVKSI----VHFSLEVSS 257 (992)
Q Consensus 184 l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~l----i~~~~~~~~ 257 (992)
+-.+.-.. .-.+...-.++++.+..++... ..+++..-++.++.+++...+. ..+.+.... +...++.++
T Consensus 224 iWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 224 IWLLTFNP-HAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred HHHhhcCH-HHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 65443222 1111112234556666655443 3356777788888888877642 112111111 122233444
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhHhHhhh-cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchH
Q 001945 258 SHNLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP 336 (992)
Q Consensus 258 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~ 336 (992)
....+++.-...++++..-.+.....+.. .+|...+ ..-..+ |++......+...=+..+.+.-+
T Consensus 300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl----~sG~L~---------WSP~Hk~e~FW~eNa~rlnenny- 365 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSEL----RSGRLE---------WSPVHKSEKFWRENADRLNENNY- 365 (442)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH----HhCCcC---------CCccccccchHHHhHHHHhhccH-
Confidence 44444444455566665443322222111 1122222 222222 33333333333332333332111
Q ss_pred HHHHHHHhhhc-CCChhhHHHHHHHHHHHhhcCHHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001945 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 337 ~~~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (992)
.++..+...++ +.|+..-..|+.=+|..++..|+... .+. ..-..++..+++++|.||..|+.|+..+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 23344444443 34577778899999999988765422 122 234678889999999999999999887653
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.82 E-value=0.00063 Score=64.29 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChh
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (992)
..|..+..+++.++...+. .+...++.+...++|+++.+|..|+..+..+...-. .+.-+.++..++.++.|+++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~-~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN-LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH-HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHcCCCHH
Confidence 4677788888888887763 566778888889999999999999999999886522 222345667788888999999
Q ss_pred HHHHHHHHHHHhHhhh-cHHHHhhhhhHHHHHHHhccc
Q 001945 394 VRGAASFALGQFAEYL-QPEIVSHYESVLPCILNALED 430 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~-~~~~~~~~~~ll~~l~~~l~~ 430 (992)
||..|..++..+.... +..+.. .++.++..+.+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~----~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYN----NFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHH----HHHHHHHHHhC
Confidence 9999999999998883 333333 44444444443
No 133
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.77 E-value=0.0046 Score=63.86 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=142.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhh--hcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc--cccc
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEY--LQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEIL 455 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~ 455 (992)
+...+..+.+.+...|.+++..+..+... ....+......++..+.+.+.....+-+..|+.++.-++-..+ ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34445555778899999999988887653 2334455678899999999988776667778888888776654 4455
Q ss_pred cchHHHHHHHHHHhcCCC--HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH-----hccC-------hhhhHhH
Q 001945 456 PFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM-----VLTN-------DEDLRSR 521 (992)
Q Consensus 456 ~~~~~l~~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~-------~~~~~~~ 521 (992)
..+..+.+.|.+.+.+.. ..+|..++.+++.++...+.....+. .+|..+..++ ...+ .+...+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~-~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE-ELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH-HHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 677888888888887754 46778889999988877665543332 2233333221 1111 1123466
Q ss_pred HHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc
Q 001945 522 ARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (992)
Q Consensus 522 ~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~ 578 (992)
..|+.+++.+...+....+...+...++.+...+..++.++|-++-.+++-+.+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 789999999998887766777778888888888998899999999999988877665
No 134
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.75 E-value=0.02 Score=72.00 Aligned_cols=349 Identities=13% Similarity=0.153 Sum_probs=202.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhc--CCHhHHHHHHHHHHHHHcccCC--CCCCcchHHHH----HHhhcCCCHHHHHHHHH
Q 001945 69 AKLSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFL----FQFSQSEQEEHREVALI 140 (992)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l----~~~l~~~~~~~~~~al~ 140 (992)
..++.+....+...|.+.-..| ....-|...-+-+..++.+... .-.|+.+...+ .....+.+..++..|+.
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAid 1159 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMD 1159 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3466666555555555432222 1112244444555555543322 13576644444 44334556677788888
Q ss_pred HHHHhhhhhhhc--cc--ccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhh
Q 001945 141 LFSSLTETIGQT--FR--PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (992)
Q Consensus 141 ~l~~l~~~~~~~--~~--~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 216 (992)
.|..++..+-+. +. ..-.+++..+...+....+.++|...++|+.+++....+ .++.=+..++.++.....
T Consensus 1160 sLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-----nIkSGWktIF~VLs~aa~ 1234 (1780)
T PLN03076 1160 SLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-----NVKSGWKSMFMVFTTAAY 1234 (1780)
T ss_pred HHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-----hhhcCcHHHHHHHHHHHh
Confidence 888877654321 11 123467777777777658889999999999998876532 245566778888877777
Q ss_pred cCCHHHHHHHHHHHHHHhcCCccch----HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-h-------
Q 001945 217 SGEEDVAVIAFEIFDELIESPAPLL----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-L------- 284 (992)
Q Consensus 217 ~~~~~~~~~~~~~l~~l~~~~~~~~----~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~------- 284 (992)
++++.....+++.+..++...-..+ ...+..++..+..++.+. .+.++-..|++++..++...... .
T Consensus 1235 d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~ 1313 (1780)
T PLN03076 1235 DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNK 1313 (1780)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhcccccccccc
Confidence 7778888999999888776432221 256677888877777544 34566677777776553321000 0
Q ss_pred ----------------------hhc-CChHHHHHHHhh---hhccCCCCCCCCCCchHHHHHHHHHHHHHHcc----hhc
Q 001945 285 ----------------------KKH-KLVIPILQVMCP---LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHV 334 (992)
Q Consensus 285 ----------------------~~~-~~~~~il~~l~~---~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~ 334 (992)
... .+..-+++.+.. ...+ +..++|..|...|-.+....| ...
T Consensus 1314 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D-------~RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076 1314 DKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFD-------PRPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 000 001112232222 2221 233678888877755555555 333
Q ss_pred hHH-----HHHHHHhhh---c---------------C-----CChhhHHHHHHHHHHHhhcC---HHHHHHhHHHHHHHH
Q 001945 335 FPP-----VFEFASVSC---Q---------------N-----ASPKYREAAVTAIGIISEGC---AEWMKEKLESVLHIV 383 (992)
Q Consensus 335 ~~~-----~~~~l~~~l---~---------------~-----~~~~~r~~al~~l~~i~~~~---~~~~~~~l~~i~~~l 383 (992)
|.. ++|.+...- . + ..|- ..+...++..+++-. .+.+...++.++..+
T Consensus 1387 W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1387 WERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 333332210 0 0 1132 455555666555533 345555678888888
Q ss_pred HhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhcccC
Q 001945 384 LGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALEDE 431 (992)
Q Consensus 384 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~ 431 (992)
..++..++..+-..+..|+.++....+..+.+ ++..++..+.+.+...
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999998877665543 5566666666555443
No 135
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.75 E-value=0.1 Score=56.79 Aligned_cols=463 Identities=13% Similarity=0.077 Sum_probs=230.9
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhh-cCCHhHHHHHHHHHHHHHcccCCCCCC-----cchHHH
Q 001945 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL-EHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPF 122 (992)
Q Consensus 49 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~-~~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~ 122 (992)
+|+.---|.+-.++.+..+-.....-.+-.-...++.++.. +....+.+..+.++...+..+- ... ...++.
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eq--d~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQ--DKVDSVLRIIELLK 99 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhcc--chHHHHHHHhhHHH
Confidence 44443334444455444332222222222222233333332 2445566677777777665431 112 235778
Q ss_pred HHHhhcCCC-HHHHHHHHHHHHHhhhhhhh---cccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHH
Q 001945 123 LFQFSQSEQ-EEHREVALILFSSLTETIGQ---TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (992)
Q Consensus 123 l~~~l~~~~-~~~~~~al~~l~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (992)
+++++.+++ ...+...+.++..+.+..+. ....+...+++.+.-..........+.-+..+ ..+ ....+. ...
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~-a~~-s~~~~h-q~I 176 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA-AHL-SSTKDH-QLI 176 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh-ccc-cccchh-hhe
Confidence 889998888 78999999999999987642 24456667777666666521222222211111 111 111111 011
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH---HHhcCCccchHHHHHH-----HHH--HHHHHhhCCCCChHHHHH
Q 001945 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFD---ELIESPAPLLGDSVKS-----IVH--FSLEVSSSHNLEPNTRHQ 268 (992)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~l~~-----li~--~~~~~~~~~~~~~~~r~~ 268 (992)
-+..-++.-+..+... ..-+.+..++.++. .++...+..-...+.. +.+ ....+..++ +.+.|..
T Consensus 177 l~Na~i~ekI~~l~~~---~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~--~~s~~l~ 251 (678)
T KOG1293|consen 177 LCNAGILEKINILLMY---LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP--DFSERLR 251 (678)
T ss_pred eccccchhhHHHHHHh---hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC--CccHHHH
Confidence 1122233333333322 23456777777777 4444433221111111 111 122333444 4555566
Q ss_pred HHHHHHHHHHhhHh------HhhhcCCh-HHH-HHHHhhhhccCCCCCCCCCCch--HHHHHHHHHH-HHHHcc-----h
Q 001945 269 AIQIISWLAKYKYN------SLKKHKLV-IPI-LQVMCPLLAESNEAGEDDDLAP--DRAAAEVIDT-MALNLA-----K 332 (992)
Q Consensus 269 a~~~l~~l~~~~~~------~~~~~~~~-~~i-l~~l~~~l~~~~~~~~d~~~~~--~~~a~~~l~~-l~~~~~-----~ 332 (992)
+++++..+.+..-. ....-+.. ..+ ...++..+.+.. |.. .....-|+.. +.+.+. .
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-------~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-------LSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-------eeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 66666655543210 00000000 001 111222222211 111 1112223222 333333 2
Q ss_pred hchHHHHHHHH--hhhcCCChhhHHHHHHHHHH---HhhcCHHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001945 333 HVFPPVFEFAS--VSCQNASPKYREAAVTAIGI---ISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQF 405 (992)
Q Consensus 333 ~~~~~~~~~l~--~~l~~~~~~~r~~al~~l~~---i~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (992)
...+...+++. .-+...+.+.|.-++.-.-. .+.+..-...+++. .....+.......+..++.+|+.++-.+
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 23344444332 23455666777655543222 22222122222221 2222333333356777899999998888
Q ss_pred HhhhcHHHHh--hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHH
Q 001945 406 AEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMS 482 (992)
Q Consensus 406 ~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~ 482 (992)
+.... .+.. .-..+...+++.+.+|+..|+..+..++.+++-.+++.-..++. ..++.+...+.+.+..+|..+++
T Consensus 405 srsV~-aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~ 483 (678)
T KOG1293|consen 405 SRSVS-ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLW 483 (678)
T ss_pred HHHHH-HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence 77652 2222 12457788888889999999999999999999877543233333 56778888888999999999999
Q ss_pred HHHHHHHHhhccC--cccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 483 AIGSVAAAAEQAF--IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 483 ~l~~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
++..+.....+.+ .++.+--...+..+. +|+++.+.+.++..+..+.
T Consensus 484 ~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~---nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 484 VLRHLMFNCDEEEKFQLLAKIPANLILDLI---NDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhcchHHHHHHHHHHhhHHHHHHHH---hCCCHHHHHHHHHHHHHhh
Confidence 9988876655432 222222233333333 4566666677777766654
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.74 E-value=0.0016 Score=60.18 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=112.7
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccCC-hHHHHHHHHHHHHHHHhhc
Q 001945 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDES-DEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 374 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~ 451 (992)
..++.++..+.+.++++++.-|+.++..++..++..+.+ +.++....+..++..++.++ +.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456778888999999999999999999999999998555 44788889999999998765 5678899999999987652
Q ss_pred -------cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Q 001945 452 -------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (992)
Q Consensus 452 -------~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (992)
+...|.++.+++.+++++++ ......++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 23468999999999998876 6778899999999999999999999988776665544
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.73 E-value=0.0079 Score=62.14 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=130.7
Q ss_pred hhcCCChhhHHHHHHHHHHHhhc--CHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhhhhH
Q 001945 345 SCQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESV 420 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~l 420 (992)
.+.+...+.|.+++..+..+... .++.+..+...++..+.++++-....=+..|+++++-++-.++ ....+.+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34556688999999998887753 5677777888999999999987666667788899999888865 5556778889
Q ss_pred HHHHHHhcccCC--hHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHH--hcC----------CCHhHHHHHHHHH
Q 001945 421 LPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAA--LEN----------SPRNLQETCMSAI 484 (992)
Q Consensus 421 l~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~--l~~----------~~~~v~~~a~~~l 484 (992)
.|.|...+.|.. ..+|..++.+|+-+.-........+. -..++.++.. .+. ++..+...|+.+|
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 999999888765 45677777777765543332221111 1233322211 111 1256899999999
Q ss_pred HHHHHHhhc-cCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhh
Q 001945 485 GSVAAAAEQ-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (992)
Q Consensus 485 ~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 535 (992)
+-++..++. .+..+....+|.+...|.. ++..+|..|-++++.+....
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHh
Confidence 999988774 4556677788888888864 34556767777777765433
No 138
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.72 E-value=0.061 Score=61.49 Aligned_cols=346 Identities=14% Similarity=0.167 Sum_probs=182.9
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhh--hcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccC
Q 001945 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKIT--GHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV 111 (992)
Q Consensus 34 p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~--~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~ 111 (992)
.+.+..|..++. .++.++...+..+|++.-. .++..+ ....+...|.+.+.+ .+..+++.+..++-.+.....
T Consensus 289 ~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi~~ENK~~m---~~~giV~kL~kLl~s-~~~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 289 KGIVSLLVKCLD-RENEELLILAVTFLKKLSIFKENKDEM---AESGIVEKLLKLLPS-ENEDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHHHH---HHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhCcCHH
Confidence 356777888876 4467788888888877621 122222 122345567777775 567777787777777654321
Q ss_pred CCC--CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHh
Q 001945 112 PAG--EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (992)
Q Consensus 112 ~~~--~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (992)
-+. .-..++|.+..++.++ ..+..++.+|..++..-. ..|. + .+.++.+.+.+...++..+...++..+.++
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~-~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA-Y-TDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh-h-cchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 111 1244778888888765 456778888888875322 1121 1 234566666555446777777777777766
Q ss_pred hcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHH
Q 001945 188 LEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRH 267 (992)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~ 267 (992)
+...+...... -.+-++.++... ++..++ ..+..+..+..+.++ ....+...+.-+..++.+.+ +++.
T Consensus 440 a~~~rnaqlm~-~g~gL~~L~~ra---~~~~D~----lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~-~ee~-- 507 (708)
T PF05804_consen 440 ALNKRNAQLMC-EGNGLQSLMKRA---LKTRDP----LLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGD-SEEF-- 507 (708)
T ss_pred hcCHHHHHHHH-hcCcHHHHHHHH---HhcccH----HHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCC-cHHH--
Confidence 65542211111 123345555543 233332 234566677666543 22333333443444555443 4444
Q ss_pred HHHHHHHHHHHhhHhHhhhcCChH--HHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-------hhchHHH
Q 001945 268 QAIQIISWLAKYKYNSLKKHKLVI--PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-------KHVFPPV 338 (992)
Q Consensus 268 ~a~~~l~~l~~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~~~~ 338 (992)
.+++++.++.-......-..++. .+++.+...|.....+ | ...-.+...++.++.... ..+.+.+
T Consensus 508 -~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~--d---Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 508 -VVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE--D---DLLLEVVILLGTLASDPECAPLLAKSGLIPTL 581 (708)
T ss_pred -HHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC--h---HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence 44455544432111000000111 2455555555433221 1 233333344444432211 2344445
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcC--HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGC--AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~--~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (992)
++.+...- .|-..-.-.++++.++..+- .+.+... .++...++..+.|.|+.||..|-.+|.-++++-
T Consensus 582 i~LL~~kq--eDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 582 IELLNAKQ--EDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHhhC--chHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 55443332 23333445566677766542 2222222 357889999999999999999999998887764
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.13 Score=62.38 Aligned_cols=330 Identities=14% Similarity=0.120 Sum_probs=167.5
Q ss_pred hhcCCHhHHHHHHHHHHHHHcccCCCCCCcc-----hHHHHHHhhc---CC-CHHHHHHHHHHHHHhhhhhh------hc
Q 001945 88 TLEHSAPVRRASANVVSIIAKYAVPAGEWPD-----LLPFLFQFSQ---SE-QEEHREVALILFSSLTETIG------QT 152 (992)
Q Consensus 88 ~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~-----ll~~l~~~l~---~~-~~~~~~~al~~l~~l~~~~~------~~ 152 (992)
...++..||-..+-|++.|.+...|+..+++ ++..++..+. +. ++. -...+.++..+..... ..
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~-f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPY-FKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcc-hhhHHHHHHHHHHhHHHheeeccc
Confidence 3458999999999999999998777644432 2333332222 11 111 1222333333333221 11
Q ss_pred ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001945 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (992)
Q Consensus 153 ~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~ 232 (992)
-.+.+.++..++...+.. +.+.--..-...+..++.-.+.. =..++.++..-+-.+.++....+...-..
T Consensus 138 ~~e~~~~~f~~f~d~~~~-~~~~~v~~~~~i~~~li~e~d~v---------~~e~L~~ll~~lv~~~~~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARK-GHPKKVFNMLDIAIMLITEEDTV---------QSELLDVLLENLVKPGRDTIKEADKLASD 207 (1266)
T ss_pred hHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccc---------hHHHHHHHHHHhccCCCCccHHHHHHHHH
Confidence 234455666667777665 33322222333333333322111 01223322222222223333333333333
Q ss_pred HhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001945 233 LIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (992)
Q Consensus 233 l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~ 312 (992)
+++..+..+.+.+.+++...+..... .-...+....+++..+-...|. .+-.++|.+...|...++
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~s--~~~~~~~~~he~i~~L~~~~p~------ll~~vip~l~~eL~se~~------ 273 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYKS--RQSSLKIKYHELILELWRIAPQ------LLLAVIPQLEFELLSEQE------ 273 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhccc--cccchhhHHHHHHHHHHHhhHH------HHHHHHHHHHHHHhcchH------
Confidence 44433333333444433332211111 1222333444455544444333 233455655555544333
Q ss_pred CchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC
Q 001945 313 LAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (992)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (992)
..|..|...++.+....+ .+..+.++..+...+.+.+..+|..++.....+.-..+...... .+.-.+-....|
T Consensus 274 -~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~--~~~~~l~~~~~D 350 (1266)
T KOG1525|consen 274 -EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS--TILLALRERDLD 350 (1266)
T ss_pred -HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--HHHHHHHhhcCC
Confidence 678888888888776554 23456677666677888999999999988877666544332211 222223223334
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHh
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 449 (992)
++.++|..+.......... ...+.+.++..+...+.|...+||..|...|..+.++
T Consensus 351 ~~~rir~~v~i~~~~v~~~----~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 351 EDVRVRTQVVIVACDVMKF----KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhhheeeEEEEEeehhHh----hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444443332222112211 1223334778888889999999999999999999885
No 140
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.69 E-value=0.031 Score=55.97 Aligned_cols=240 Identities=14% Similarity=0.135 Sum_probs=144.2
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHH
Q 001945 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (992)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 243 (992)
+-..|++ .++.+|..|+.+|+.++...+...-. .+-+..+++.+...+ .|......++..+..++. ...+-..
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp~~~L~---~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~-~~~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLPPDFLS---RQEVQVLLDFFCSRL--DDHACVQPALKGLLALVK-MKNFSPE 76 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCCHhhcc---HHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHh-CcCCChh
Confidence 4567888 89999999999999998887532111 112344444444444 455666666788888873 3444455
Q ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHH--HHHH
Q 001945 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR--AAAE 321 (992)
Q Consensus 244 ~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~--~a~~ 321 (992)
....+++.+++-...+......|..+++++..+.+........ .-..++..+++.+.... ++|. .+.+
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~--~~~~fv~~~i~~~~gEk--------DPRnLl~~F~ 146 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS--MGDDFVYGFIQLIDGEK--------DPRNLLLSFK 146 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh--chhHHHHHHHHHhccCC--------CHHHHHHHHH
Confidence 5666666666544444556788999999999998876655533 22334444444443322 3444 3445
Q ss_pred HHHHHHHHcc-hhchHHHHHHHHhhh--------cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCCh
Q 001945 322 VIDTMALNLA-KHVFPPVFEFASVSC--------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ 392 (992)
Q Consensus 322 ~l~~l~~~~~-~~~~~~~~~~l~~~l--------~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 392 (992)
.+..+...+. .+..+.+++.+..+. +++..-.|+.--.+|.......+ .+.+..+|.++..|.++.+
T Consensus 147 l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 147 LLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPFAFPLLLEKLDSTSP 222 (262)
T ss_pred HHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHHHHHHHHHHHcCCCc
Confidence 5555555555 334444444443332 12222233333333333222211 2345789999999999999
Q ss_pred hHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHH
Q 001945 393 FVRGAASFALGQFAEYLQPE-IVSHYESVLPCI 424 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l 424 (992)
.++.-++.+|...+..++.. +.+|+..+...+
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 99999999999999888654 455665555544
No 141
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.66 E-value=0.0017 Score=74.48 Aligned_cols=178 Identities=13% Similarity=0.178 Sum_probs=147.1
Q ss_pred CCCCchHHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh
Q 001945 310 DDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (992)
+.+|..|..|.+.+....+.-+ ......+...+.-...|.+..+-..++..+..++...+....++...++|.++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLD 343 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHH
Confidence 4568888888877755544333 233344445555567888999999999999999999998888999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc--cccchHHHHH
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMG 463 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~l~~ 463 (992)
.+.+..+.+|.++..++..++... .+..+.+.++..+.+.++.++..+..++...+...+.. ...-...+++
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p 417 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVP 417 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhH
Confidence 999999999999999999888743 34668899999999999999999999999999888642 2356778999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 464 KLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 464 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
.++....+.+..||..++++++.+....|+
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999988875
No 142
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.63 E-value=0.00055 Score=62.41 Aligned_cols=95 Identities=23% Similarity=0.399 Sum_probs=85.2
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHh-hccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHH---HHHhh
Q 001945 417 YESVLPCILNALEDESDEVKEKSYYALAAFCED-MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV---AAAAE 492 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l---~~~~~ 492 (992)
++.++|.+++++.+....-+--|...+..+++. .++.+.|.+++++..+...+++.++++...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467999999999988878888899999999998 67788999999999999999999999999999999999 66778
Q ss_pred ccCcccHHHHHHHHHHHHh
Q 001945 493 QAFIPYAERVLELLKIFMV 511 (992)
Q Consensus 493 ~~~~~~~~~~~~~l~~~l~ 511 (992)
+.+.||+.+++|.+.-+.+
T Consensus 116 ~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875554
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.63 E-value=0.048 Score=59.82 Aligned_cols=307 Identities=15% Similarity=0.195 Sum_probs=142.7
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCC
Q 001945 37 VPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE 115 (992)
Q Consensus 37 ~~~l~~il~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~ 115 (992)
......|+.. ..++..+++|+.++-+.+ ..+ |+..+.-.+.++.+.. |.+..||.++...|-.+++.. + ..
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kff----k~F-P~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~-~-~~ 93 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFF----KHF-PDLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDN-P-EH 93 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHH----CC--GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T----T-
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHH----hhC-hhhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhH-H-HH
Confidence 3334444432 246889999998876654 444 3455566666777666 689999999999999998864 2 23
Q ss_pred CcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHhhcccCC
Q 001945 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL--QDETSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l--~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.+.+...|.++++++++......=..|..+....+. ..+-.++.... .. .+..+|..+++.+..-+.....
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k------~tL~~lf~~i~~~~~-~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK------GTLTGLFSQIESSKS-GDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHH---H-S-HHHHHHHHHHHHHHGGGS-T
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccc-CchHHHHHHHHHHHHHHhhCcH
Confidence 478889999999988866555555556655543331 12222333333 23 5778999999988665544322
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc----hHHHHHHHHHHHHHHhhCC-C---CChHH
Q 001945 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL----LGDSVKSIVHFSLEVSSSH-N---LEPNT 265 (992)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~l~~li~~~~~~~~~~-~---~~~~~ 265 (992)
.. ...-.+.-..++..+...+.+-..+. +..+..++...+-+ -......+++.+.+.+.-. . .+++.
T Consensus 167 ~~-~~p~~E~e~~i~~~ikkvL~DVTaeE----F~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 167 EL-LTPQKEMEEFIVDEIKKVLQDVTAEE----FELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp TT-S---HHHHHHHHHHHHHHCTT--HHH----HHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHH
T ss_pred HH-hhchHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHH
Confidence 11 00001222345555556665423333 33333443332221 1233455666666554321 1 12232
Q ss_pred HHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc----hhchHHHHHH
Q 001945 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEF 341 (992)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~ 341 (992)
-...+.++..-...........+|+.-+...++|.+.+..+ ..+......+..++...+ ...++.+++.
T Consensus 242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e-------~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~ 314 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPE-------DRKLDLLKLLAELSPFCGAQDARQLLPSIFQL 314 (556)
T ss_dssp HHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------------HHHHHHHHHHHHHTT----THHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCCh-------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 22223322221111111111222444444445554444322 223333444444444444 3344555555
Q ss_pred HHhhhcC------CChhhHHHHHHHHHHHhhcCHH
Q 001945 342 ASVSCQN------ASPKYREAAVTAIGIISEGCAE 370 (992)
Q Consensus 342 l~~~l~~------~~~~~r~~al~~l~~i~~~~~~ 370 (992)
+...+-. -++..-++.++++-.++...++
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 5444321 1344556666666666665443
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.62 E-value=0.00072 Score=61.69 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcCCCCccchhhHHHHHHHHHhh-cCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHH---HhhcC
Q 001945 823 AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD-MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGEL---CKNGG 898 (992)
Q Consensus 823 ~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l---~~~~~ 898 (992)
..++|.+...+...+.+ .+..|...+.++++. ++..+.|.++++++.+-..|++.+++|..+++.+|..+ ....|
T Consensus 37 ~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 46788888888766654 689999999999999 67779999999999999999999999999999999999 45556
Q ss_pred cchhhHHHHHHHhhhhhhCC
Q 001945 899 ESALKYYGDILRGLYPLFGD 918 (992)
Q Consensus 899 ~~~~~~~~~~l~~l~~~l~~ 918 (992)
+...||+.++++.+.-....
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k 135 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNK 135 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 78899999999988644443
No 145
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.62 E-value=0.19 Score=55.98 Aligned_cols=296 Identities=15% Similarity=0.145 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCC
Q 001945 94 PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (992)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 172 (992)
.-|-.++.-++...... +-..-+++......++... ..+.|..++.++..+++.-...... .-..+...+.++.
T Consensus 5 ~~R~~a~~~l~~~i~~~-~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~----~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 5 SERIKAAEELCESIQKY-PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL----MRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH----HHHHHHHHHhcCC
Confidence 34555666666554432 2123333333334444433 4578999999999998765532111 1122233334323
Q ss_pred ---ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh----------h-------------cCCHHHHHHH
Q 001945 173 ---SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----------A-------------SGEEDVAVIA 226 (992)
Q Consensus 173 ---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l----------~-------------~~~~~~~~~~ 226 (992)
+-..|..|+.+|. ...++-.. -..++.|.+...+.... . +.+.......
T Consensus 80 ~~~d~~~~l~aL~~LT---~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 80 NDDDFDLRLEALIALT---DNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred CchhHHHHHHHHHHHH---cCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 3345555555554 33322110 01222333333332222 0 0123344567
Q ss_pred HHHHHHHhcCCccchH-HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCC
Q 001945 227 FEIFDELIESPAPLLG-DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (992)
Q Consensus 227 ~~~l~~l~~~~~~~~~-~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (992)
+..+..+++.....++ ..+..++..++.++..+...+++ ..++.++..++.+.. .+..-+.+++.++.......
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~---iP~~sl~~~i~vLCsi~~~~- 229 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD---IPSESLSPCIEVLCSIVNSV- 229 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc---CChHHHHHHHHHHhhHhccc-
Confidence 7778888888777665 67788888888887766544444 678888888876421 01113445666665553322
Q ss_pred CCCCCCCCchHHHHHHHHHHHH-HHcchhchHHHHHHH--HhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh----HHH
Q 001945 306 EAGEDDDLAPDRAAAEVIDTMA-LNLAKHVFPPVFEFA--SVSCQNASPKYREAAVTAIGIISEGCAEWMKEK----LES 378 (992)
Q Consensus 306 ~~~~d~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~l--~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~----l~~ 378 (992)
+....+.+++..+. .+.|...+..+..++ ...-...+...-.+|+..++.+.-+.++.-.+. ...
T Consensus 230 --------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 230 --------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred --------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 33445666666666 344555556666655 222223456667799999988876652211111 234
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhH-hhhcHH
Q 001945 379 VLHIVLGALRDPEQFVRGAASFALGQFA-EYLQPE 412 (992)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~ 412 (992)
+++.+...++.+++.|-.....++..+. ..+...
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 8899999999888888888888887777 444443
No 146
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.59 E-value=0.1 Score=58.48 Aligned_cols=384 Identities=15% Similarity=0.184 Sum_probs=191.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh----CCCCc---HHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhcccCCCHHHHH
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLA----KDPQV---VPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~----~~p~~---~~~l~~il~~~~-~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 77 (992)
..+|..+-|++..+|++..+.+.++. .+|+. +..|+....++. ++-+|.++.++++.-+ ..++++.+.
T Consensus 26 ~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~----~Rl~~~e~~ 101 (501)
T PF13001_consen 26 PPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF----DRLDDEERR 101 (501)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh----hcCCHHHHH
Confidence 34555566899999999999998764 34654 667888777665 7889999999998776 667889999
Q ss_pred HHHHHHHHHHhhcCC--HhHHHHHHHHHHHHHccc----CCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhh-----
Q 001945 78 LVKQSLIESITLEHS--APVRRASANVVSIIAKYA----VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT----- 146 (992)
Q Consensus 78 ~i~~~ll~~l~~~~~--~~vr~~~~~~l~~i~~~~----~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~----- 146 (992)
.+...+++.+..-+. ......++..+-.+.+.. .| ..|.+..........=.+.......+..+..+.
T Consensus 102 ~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~ 180 (501)
T PF13001_consen 102 ELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEP-PRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPN 180 (501)
T ss_pred HHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccc-cccchhhhcHHHHHhhcchHHHHHcchhhccccccccc
Confidence 999999998873111 122222222222222211 11 122222211111110000000000000000000
Q ss_pred ---------hhhhhccc-----------------ccHH----HHHHHHHHhc--------------CCCCChHHHHHHHH
Q 001945 147 ---------ETIGQTFR-----------------PHFA----DMQALLLKCL--------------QDETSNRVRIAALK 182 (992)
Q Consensus 147 ---------~~~~~~~~-----------------~~~~----~i~~~l~~~l--------------~~~~~~~vr~~a~~ 182 (992)
...++.+. ..+. .++.++..+. .+ ++..|...|-.
T Consensus 181 ~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad-~~~~V~~~ae~ 259 (501)
T PF13001_consen 181 RAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD-SNSSVSDRAED 259 (501)
T ss_pred cccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC-CcchHHHHHHH
Confidence 00000000 0111 1222222222 22 45566666666
Q ss_pred HHHHhhcccCChhhHHHHHhhHHHHHHHHHH-H------hhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 001945 183 AIGSFLEFTNDGAEVVKFREFIPSILNVSRQ-C------LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEV 255 (992)
Q Consensus 183 ~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~-~------l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~ 255 (992)
.|.++....++.. ++..++..... . ....++..+...+..|..-... ....+.+++.+...
T Consensus 260 ~LKr~~~~~ed~~-------~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 260 LLKRLSVSLEDPD-------LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFDG 327 (501)
T ss_pred HHhhcCCCCCCHH-------HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhcc
Confidence 6666554443321 22222222210 0 0012344555555555442111 11223344444433
Q ss_pred hhCCCCChHHHHHHHHHH---HHHHHhhHhHhhhcCChHHHHHHHhhhhccCC-CCCCCCCCchHHHHHHHHHHHHHHcc
Q 001945 256 SSSHNLEPNTRHQAIQII---SWLAKYKYNSLKKHKLVIPILQVMCPLLAESN-EAGEDDDLAPDRAAAEVIDTMALNLA 331 (992)
Q Consensus 256 ~~~~~~~~~~r~~a~~~l---~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (992)
+..+......|..+++++ .+.....+....+. +-+.+.....+.+.... .....++...|..+-++++.++...+
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~-l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKL-LRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHH-HHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 333323567788889998 66665443322110 11223333333442111 11223445778899999999999888
Q ss_pred hhch--HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHH---HhHHHHH-HHHHhhcCCCChhHHHHHHHHHHHh
Q 001945 332 KHVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK---EKLESVL-HIVLGALRDPEQFVRGAASFALGQF 405 (992)
Q Consensus 332 ~~~~--~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~---~~l~~i~-~~l~~~l~d~~~~vr~~a~~~l~~l 405 (992)
.-+. -.++.++...+.++....|-+.-.||+.++......-. ....... -.+.....+....+|.+|.+....+
T Consensus 407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 4332 34566666667888888888887888887776543221 1111222 2333334466777888888777766
Q ss_pred Hhh
Q 001945 406 AEY 408 (992)
Q Consensus 406 ~~~ 408 (992)
..+
T Consensus 487 fpf 489 (501)
T PF13001_consen 487 FPF 489 (501)
T ss_pred CCc
Confidence 544
No 147
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00031 Score=57.70 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=67.9
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch
Q 001945 380 LHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (992)
Q Consensus 380 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 458 (992)
+|.++..+ +|+++.||..++++|+.+.. +.++|.+...+.|+++.||..|+.+|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 46677877 79999999999999994432 247888999999999999999999999872 2
Q ss_pred HHHHHHHHHHhcCC-CHhHHHHHHHHHH
Q 001945 459 DPLMGKLLAALENS-PRNLQETCMSAIG 485 (992)
Q Consensus 459 ~~l~~~l~~~l~~~-~~~v~~~a~~~l~ 485 (992)
+..++.|...+.++ +..+|..+..++|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44667777777765 5667999988875
No 148
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.003 Score=61.66 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=121.4
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
+.-....+.+.+|.....++..+..+++.-++.+.+.+..++..+.+.++.+...|-.+||.+++.+...+...+...++
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld 169 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELD 169 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333557899999999999999999999999999999999999999999999999999999999999998877777677
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.++..|+..-...+.-|+..|-.+|..++..... ..+++.|+..+++..+.++..+..++.+.....+
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 7777776666666678999999999999877643 2467777788888888888888777766655544
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.55 E-value=0.0035 Score=58.01 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=110.3
Q ss_pred hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC-HHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhh
Q 001945 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 409 (992)
+..+..+...+...+++.++..|.+|+..+..+++.+ .+.+..+....+..+++.++. +.+.++..++.++..+....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455677778888999999999999999999999988 566667788888888888885 45678999999999998765
Q ss_pred cH--H-----HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHh
Q 001945 410 QP--E-----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (992)
Q Consensus 410 ~~--~-----~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (992)
.+ + ..++++.+++.+++.+++ ..+...++.+|..++...+..+.||...+-..+...+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 32 2 245677888888887776 4677889999999999999999999998887776654
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.48 E-value=0.041 Score=60.31 Aligned_cols=281 Identities=12% Similarity=0.112 Sum_probs=134.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001945 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (992)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (992)
+-...++...+. +...+..|.+.+..+...+|+. .+.-++.+..+..| .+..||..|++.|..++...
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~------ 90 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDN------ 90 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhH------
Confidence 345556666654 4667788888888888877753 45566667777788 99999999999998887754
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001945 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (992)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (992)
..+++.+..+|.++++++++.....+-++|..+....++ .+...+.++. ..+.-++.+|..++.|+..-
T Consensus 91 ---~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~-------~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 91 ---PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE-------SSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp ----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHH
T ss_pred ---HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHH
Confidence 346788888888999988888877788888888776553 2222222222 11222678999999998643
Q ss_pred HHhhHh-HhhhcCChH-HHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH---HcchhchHHHHHHHHhhh-----
Q 001945 277 AKYKYN-SLKKHKLVI-PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL---NLAKHVFPPVFEFASVSC----- 346 (992)
Q Consensus 277 ~~~~~~-~~~~~~~~~-~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~---~~~~~~~~~~~~~l~~~l----- 346 (992)
....+. .+....-.+ -++..+...|.+... +| -......|..+-. .-+..-...+++.+.+..
T Consensus 161 l~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTa----eE---F~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~ 233 (556)
T PF05918_consen 161 LKPLKPELLTPQKEMEEFIVDEIKKVLQDVTA----EE---FELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQP 233 (556)
T ss_dssp GGGS-TTTS---HHHHHHHHHHHHHHCTT--H----HH---HHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS-
T ss_pred HhhCcHHHhhchHHHHHHHHHHHHHHHHhccH----HH---HHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCC
Confidence 322221 111101111 233444444433211 00 0011111111111 001111123444443221
Q ss_pred -cCCChhh--H--HHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH-HHHhhhhhH
Q 001945 347 -QNASPKY--R--EAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESV 420 (992)
Q Consensus 347 -~~~~~~~--r--~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l 420 (992)
...|... | .+...++-.+..+... ..++.-+...+++.+++-....|..-++++..++.+.++ +....++.+
T Consensus 234 f~~sD~e~Idrli~C~~~Alp~fs~~v~S--skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i 311 (556)
T PF05918_consen 234 FDPSDPESIDRLISCLRQALPFFSRGVSS--SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSI 311 (556)
T ss_dssp --SSSHHHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhHHhcCCCCh--HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHH
Confidence 1122221 1 1222233333333221 234455566677777765666777788888888887653 222334444
Q ss_pred HHHHHHhcc
Q 001945 421 LPCILNALE 429 (992)
Q Consensus 421 l~~l~~~l~ 429 (992)
+..|...+-
T Consensus 312 ~~~L~~ymP 320 (556)
T PF05918_consen 312 FQLLKKYMP 320 (556)
T ss_dssp HHHHHTTS-
T ss_pred HHHHHHhCC
Confidence 444444443
No 151
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.48 E-value=0.0015 Score=60.32 Aligned_cols=139 Identities=22% Similarity=0.237 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHhhc-CHHHHHHhHHHHHHHH------------HhhcCCCChhHHHHHHHHHHHhHhhhcHHH-----
Q 001945 352 KYREAAVTAIGIISEG-CAEWMKEKLESVLHIV------------LGALRDPEQFVRGAASFALGQFAEYLQPEI----- 413 (992)
Q Consensus 352 ~~r~~al~~l~~i~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----- 413 (992)
++|.+|+.+++.+++. .+..+..+...++|.- .-.+.|++++||.+|+.++..+.+..++.+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3577777777777766 3333444444444332 223579999999999999999987654322
Q ss_pred -----------H----hhhhhHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhcc-ccc-cchHHHHHHHHHHhcCCCHh
Q 001945 414 -----------V----SHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGE-EIL-PFLDPLMGKLLAALENSPRN 475 (992)
Q Consensus 414 -----------~----~~~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~-~~~-~~~~~l~~~l~~~l~~~~~~ 475 (992)
. ..+.++=..++..++.+ +..+....++++..++...+- .+. .++..++..+...+.+.|..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 11222223455555544 567888999999999988863 343 57888999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001945 476 LQETCMSAIGSVAAA 490 (992)
Q Consensus 476 v~~~a~~~l~~l~~~ 490 (992)
++..++.+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
No 152
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.55 Score=57.95 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=115.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhc--CCHhHHHHHHHHHHHHHcccCCC-
Q 001945 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVPA- 113 (992)
Q Consensus 37 ~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~~- 113 (992)
...|...+.+...+++|++..+-+.+.+.. |..++.-..-...+.. +..+ +++.-...+..+++....+..+.
T Consensus 53 ~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~---l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~ 128 (2067)
T KOG1822|consen 53 EQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDF---LSDGSPSDPQRKLAALSCLGSLYEHYGRMI 128 (2067)
T ss_pred HHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhh---hhcCCCccHHHHHhhccchHHHHHHhhHhh
Confidence 455667777777899999999999998877 7776644333322222 2222 23333444555666665543331
Q ss_pred -CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc--ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc
Q 001945 114 -GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 114 -~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (992)
....+.+..+..+.+..+...+...+..+.......+.. .......+.-.....+.+ .+..||.+|.+|+..+...
T Consensus 129 ~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld-~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 129 GRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLD-RSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhh-hhHHHHHHhHHHHHHHHhh
Confidence 235677777777777666666777777777776666522 223345566666777777 7777999999998877655
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001945 191 TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (992)
Q Consensus 191 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (992)
...... ..-+...-..+++.+...+.+++....+++..+...
T Consensus 208 ~~~~~~----~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 208 GGPGLG----TSELETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred cCcccc----chhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 432211 111223333444444445666777767777766543
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.47 E-value=0.33 Score=55.19 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
..++..+...++.+....|++.|+..+.++..+++. ...++..+-.+...=.++-..++..++..|.++....
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~-------~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~ 647 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE-------ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRD 647 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch-------hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhC
Confidence 456677777777336677999999999999888742 2334444444433334555678899999999998877
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 001945 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (992)
Q Consensus 238 ~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (992)
|..+.-.- ..+..++.+..+. +..+...|..++.
T Consensus 648 pr~~~~~~-~wl~~li~~~~d~--es~v~e~a~~~i~ 681 (1529)
T KOG0413|consen 648 PRLFSLSS-KWLHTLISMLNDT--ESDVTEHARKLIM 681 (1529)
T ss_pred chhhhhhH-HHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 77662221 1222222233222 5556666666554
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.097 Score=57.64 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=93.8
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcH
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
..+..+++. ..++.+-.+|.+|..++|.+.-.-++ .+|.+++.|. +-|+.||..+..+||-.|..-+.
T Consensus 554 kair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~ 622 (929)
T KOG2062|consen 554 KAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL 622 (929)
T ss_pred hhHHHhhcc---cccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc
Confidence 344444443 36778889999999999998765443 3455555665 45899999999999998877553
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhH
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNL 476 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v 476 (992)
. ..+..|-....|+..-||..|+-++.-+.-...+.+-|-...+.+.+.+.+.+.+.+.
T Consensus 623 ~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 623 K------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred H------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 1 2333344455588888999999999998888877888888889999988888766543
No 155
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.37 Score=54.98 Aligned_cols=162 Identities=12% Similarity=0.193 Sum_probs=111.7
Q ss_pred CHHHHHHHHHH-HHHHhCCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCC
Q 001945 16 DNDARRQAEDQ-IKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHS 92 (992)
Q Consensus 16 d~~~r~~A~~~-l~~~~~~p~~~~~l~~il~~--~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~ 92 (992)
+...|..|-+. +.++....+.-..+-.++.. +.+.++|++.-.++.+. ....|+..-...+.+.+-+. +++
T Consensus 32 n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~y-----ak~~P~~~lLavNti~kDl~-d~N 105 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERY-----AKLKPELALLAVNTIQKDLQ-DPN 105 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHhhcc-CCC
Confidence 33445555554 46776654433333344432 66889998887777665 34445555555667777777 599
Q ss_pred HhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCC
Q 001945 93 APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (992)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 172 (992)
+.+|..+.+.++.+-.. .-|..+++.+.+++.++.+-+|..|..++..+.+..+..+.+. .....+...+.+ +
T Consensus 106 ~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D-~ 178 (757)
T COG5096 106 EEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVAD-S 178 (757)
T ss_pred HHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhC-C
Confidence 99998888888876543 2688899999999999999999999999999986655332211 134455566667 9
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 001945 173 SNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~ 190 (992)
+|.|..+|+.++..+-.-
T Consensus 179 dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 179 DPIVIANALASLAEIDPE 196 (757)
T ss_pred CchHHHHHHHHHHHhchh
Confidence 999999998888765443
No 156
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.42 E-value=0.034 Score=55.75 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc--chhchHHHH
Q 001945 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL--AKHVFPPVF 339 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~ 339 (992)
++.+|..++.+|..+.+..|...-...-+..++......+.+. ..-..+..++..+...- +......++
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~---------~~~~~~l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH---------ACVQPALKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH---------hhHHHHHHHHHHHHhCcCCChhhHHHHH
Confidence 8899999999999887765543222122333444444444221 23334466666666332 233444555
Q ss_pred HHHHhhh--cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 340 EFASVSC--QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 340 ~~l~~~l--~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
..+.+.. ++-....|......+..+.+...+.+...-+..+..+++.+. ..+|+--..++..+..+...+. +.++
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~ 160 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEF 160 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchh
Confidence 5544432 233456899999999999888766665545567777777776 5788888888888888887774 2444
Q ss_pred hhhHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 417 YESVLPCILNALE--------DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 417 ~~~ll~~l~~~l~--------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
.+.++..+.-.+- |+..-.+..-..+|...+.. -..|.+..++.|+..|.++...+|..++.++...+
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s----~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS----TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC----cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 5555555544431 22112233333444433322 12356678888999999998999999999999988
Q ss_pred HHhh-ccCcccHHHHHHHHHH
Q 001945 489 AAAE-QAFIPYAERVLELLKI 508 (992)
Q Consensus 489 ~~~~-~~~~~~~~~~~~~l~~ 508 (992)
...+ +.+.+|...++..++.
T Consensus 237 ~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 237 ENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 8777 4577888877776654
No 157
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=1.1 Score=59.30 Aligned_cols=96 Identities=18% Similarity=0.357 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHhcCCC--------CChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 001945 156 HFADMQALLLKCLQDE--------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 227 (992)
.+..++|.+.+.+.+. +..+.|..++..+.++.... .++.+...++..+.+.+..++++...-|+
T Consensus 46 ~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e-------~~~~~~~~~~~~~~~vl~~dNeen~~l~l 118 (3550)
T KOG0889|consen 46 FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNE-------VFKPFSQELLKVLMRVLTNDNEENAILCL 118 (3550)
T ss_pred HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 4667777777777652 34568888888887766543 25666677888888888888999999999
Q ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHhhC
Q 001945 228 EIFDELIESPAPLLGDSVKSIVHFSLEVSSS 258 (992)
Q Consensus 228 ~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~ 258 (992)
+++..+.+...+.+..++..++.++.++..+
T Consensus 119 kii~~l~r~f~~~~~~~v~~fl~~V~~ly~~ 149 (3550)
T KOG0889|consen 119 KIITDLFRQFKSLVEQHVQPFLDIVIDLYKN 149 (3550)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888888888877766543
No 158
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.36 E-value=0.00028 Score=43.71 Aligned_cols=30 Identities=47% Similarity=0.554 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001945 379 VLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (992)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (992)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 159
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.32 E-value=0.24 Score=52.59 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=130.5
Q ss_pred CccchHHHHHHHHHHHHHHhhCC-------CC-C----hHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccC
Q 001945 237 PAPLLGDSVKSIVHFSLEVSSSH-------NL-E----PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES 304 (992)
Q Consensus 237 ~~~~~~~~l~~li~~~~~~~~~~-------~~-~----~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~ 304 (992)
.|++|..++...+..+..++.-+ +. + +.++..+++.+...++.+...+.. |++.++.....+|...
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~--~l~~fv~~vw~lL~~~ 149 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEP--FLPTFVQAVWNLLTKI 149 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHTC-
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 46777777776666554433211 11 1 234555666666666555544433 7777777777777665
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHcc-hhch------HHHHHH-HHhhh----------------------c-CCChhh
Q 001945 305 NEAGEDDDLAPDRAAAEVIDTMALNLA-KHVF------PPVFEF-ASVSC----------------------Q-NASPKY 353 (992)
Q Consensus 305 ~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~------~~~~~~-l~~~l----------------------~-~~~~~~ 353 (992)
...... | ..-..+...|..+++... +..+ ..+++. +...+ . ++....
T Consensus 150 ~~~~~~-D-~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~Tr 227 (370)
T PF08506_consen 150 SQQPKY-D-ILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTR 227 (370)
T ss_dssp -SSGGG-H-HHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SH
T ss_pred hhcccc-c-HHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCc
Confidence 432111 0 122233344443332211 1122 222211 11111 1 122346
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhc---CCCChhHHHHHHHHHHHhHhhhcH------------HHHhhh-
Q 001945 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL---RDPEQFVRGAASFALGQFAEYLQP------------EIVSHY- 417 (992)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~------------~~~~~~- 417 (992)
|.||+..+..+++...+...+.+...+..++... ...+++-+.+|+..++.++..... ++..++
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 7899999999888765555554444444444422 245789999999999999876521 123333
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l 484 (992)
..++|.|. .-.+..|-+|..|++.+..|-...++ +.+..+++.+...|.+++.-|+..|..++
T Consensus 308 ~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 308 QHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33455554 22244577899999999998766553 47778999999999999888888877654
No 160
>PF05536 Neurochondrin: Neurochondrin
Probab=97.31 E-value=0.47 Score=53.52 Aligned_cols=240 Identities=12% Similarity=0.120 Sum_probs=133.5
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHH----HHHHHHHHHHHHHhhc-------CCHhHHHHHHH
Q 001945 33 DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ----LKQLVKQSLIESITLE-------HSAPVRRASAN 101 (992)
Q Consensus 33 ~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~----~~~~i~~~ll~~l~~~-------~~~~vr~~~~~ 101 (992)
+++.+..++.++++.. .+.|..|..++++.+... ..+.. ..+.+=..++..|... +...-+..+..
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 3456677888877544 566666666666665421 11111 1122222344444322 12334444444
Q ss_pred HHHHHHcccC--CCCCCcchHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhcCCCCChHH
Q 001945 102 VVSIIAKYAV--PAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDETSNRV 176 (992)
Q Consensus 102 ~l~~i~~~~~--~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~v 176 (992)
+++.+..... .+...-+-+|.+.+.+.+.+. ....-++++|..++..-. ..+.. ...++.+...+.+ .+..
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~--~g~v~~L~ei~~~--~~~~ 155 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE--SGAVPALCEIIPN--QSFQ 155 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh--cCCHHHHHHHHHh--Ccch
Confidence 5555554210 012445568888888877665 788889999999884322 11111 1123333333333 4456
Q ss_pred HHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc------chHHHHHHHHH
Q 001945 177 RIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVKSIVH 250 (992)
Q Consensus 177 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~------~~~~~l~~li~ 250 (992)
...|+..+..++...... .+......+..++..+...........+...+..|..+....+. .-......+..
T Consensus 156 ~E~Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred HHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 777888888877655321 12222333344555555555444455677788888888776531 22345566777
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhH
Q 001945 251 FSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (992)
Q Consensus 251 ~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (992)
.+..++.+. ..+..|..++.+...+.+..+
T Consensus 235 gl~~iL~sr-~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 235 GLRDILQSR-LTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 777777665 478889999888888776543
No 161
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.29 E-value=0.011 Score=58.56 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=118.3
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC--cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc--cccc
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW--PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--FRPH 156 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~--~~~~ 156 (992)
+.|+..|....++.++..+..+++..+.+...+..+ -.-++.+...+.++++.++..|+.++..+....... +..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 457788887689999999999999987755432222 346888999999999999999999999887655432 2233
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001945 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (992)
Q Consensus 157 ~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (992)
++.+.. .....+-+..++.+++++|.++.-.... ...+...+|.++ +++..++..++..++++|..+.+.
T Consensus 95 i~~Vc~---~~~s~~lns~~Q~agLrlL~nLtv~~~~---~~~l~~~i~~ll----~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCE---ETVSSPLNSEVQLAGLRLLTNLTVTNDY---HHMLANYIPDLL----SLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHH---HHhcCCCCCHHHHHHHHHHHccCCCcch---hhhHHhhHHHHH----HHHHcCChHHHHHHHHHHHHhccC
Confidence 333333 2333434678889999999998644321 111333445544 456678888999999999999875
Q ss_pred CccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001945 237 PAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (992)
Q Consensus 237 ~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (992)
... .+..+. +....++.++... .+.++...++.++..+.+
T Consensus 165 p~~-~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDM-TRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE 205 (254)
T ss_pred HHH-HHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 321 111111 2233333444332 245555666666655544
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.26 E-value=0.15 Score=54.50 Aligned_cols=252 Identities=21% Similarity=0.252 Sum_probs=123.6
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001945 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (992)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (992)
...+.+.+.+.+.+..+|..+...++.+- ....++.+.+.+.+ .++.+|..|..+++.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d-~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSD-EDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC-CCHHHHHHHHHHHHccCC--------
Confidence 45666666666666666666665544332 24456666777777 777777777775543221
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCC----------CChHHHH
Q 001945 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN----------LEPNTRH 267 (992)
Q Consensus 198 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~----------~~~~~r~ 267 (992)
...+|.++..+.. +.+..++..+...|..+-.... +..++.. ..+.. ....+|.
T Consensus 104 ---~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~~~----l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 104 ---PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLLEA----LQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ---hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHHHH----hccchhhhhhhhccchHHHHHH
Confidence 1122444443322 4556666666666665543211 1112211 11110 0113344
Q ss_pred HHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc
Q 001945 268 QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ 347 (992)
Q Consensus 268 ~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 347 (992)
.+...+..+.. +...+.+.+.+.+.. ..+|..+...+..+.... ..+.+.+...+.
T Consensus 168 ~a~~~l~~~~~------------~~~~~~l~~~l~~~~-------~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~ 223 (335)
T COG1413 168 AAAEALGELGD------------PEAIPLLIELLEDED-------ADVRRAAASALGQLGSEN-----VEAADLLVKALS 223 (335)
T ss_pred HHHHHHHHcCC------------hhhhHHHHHHHhCch-------HHHHHHHHHHHHHhhcch-----hhHHHHHHHHhc
Confidence 44433332221 011122222222221 145555655555444322 233444555667
Q ss_pred CCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHh
Q 001945 348 NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNA 427 (992)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 427 (992)
+++|.+|..++.+++.+... ...+.+...+.+.++.++..+...++.+ ........+...
T Consensus 224 ~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~ 283 (335)
T COG1413 224 DESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLL 283 (335)
T ss_pred CCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHH
Confidence 77777777777777665544 3344555555666666665555554411 011123344455
Q ss_pred cccCChHHHHHHHHHHHHHHH
Q 001945 428 LEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~ 448 (992)
+.+....++..+..++..+..
T Consensus 284 ~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 284 LIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hhcchhhHHHHHHHHHHhhcc
Confidence 556666666666666665543
No 163
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.018 Score=58.18 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=104.7
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHH
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCIL 425 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~ 425 (992)
.+.+...|+.|+.-|...++.......-.--..+..++..+++.+..+|..|.+.+|..+...+......+ ...++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45678899999999999998764332212113344455599999999999999999999998754333322 34677888
Q ss_pred Hhccc-CChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcC--CCHhHHHHHHHHHHHHHHHhh
Q 001945 426 NALED-ESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 426 ~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~ 492 (992)
..+.. .+..+|..|+.|+.+++++.+.....++. .=+..|.+++++ .+...+..++..++.+.....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 87774 34678899999999999988644333222 115677778887 456778889999998887654
No 164
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.61 Score=53.62 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=78.5
Q ss_pred HHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-----cccchHHHHHHHHHHhcCC
Q 001945 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-----ILPFLDPLMGKLLAALENS 472 (992)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~~l~~~l~~~l~~~ 472 (992)
+...+|.++...+..+.+.+-..+-.++..+.++++.++..|-.|+..++..+... +..-.+-++..+...+++.
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 35667778888777777776666666777788888899999999999999988532 2334555666666655533
Q ss_pred CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 001945 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 473 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (992)
. +...+-..+..++...+....|+++.++..+...+...
T Consensus 648 ~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~y 686 (1014)
T KOG4524|consen 648 G--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYY 686 (1014)
T ss_pred C--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHh
Confidence 2 12233445555666666677888888888888777543
No 165
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.48 Score=52.29 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc--ccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhh
Q 001945 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (992)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~ 149 (992)
..+....+...++++..+ ++..||...+++++.+.. ...++.-++.+...+..-+.+..+.+|..|+.+|..+-+.-
T Consensus 79 e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred hhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 345667777777777774 899999999999999987 44444556677777777788889999999999999886432
Q ss_pred hhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 001945 150 GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGS 186 (992)
Q Consensus 150 ~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~ 186 (992)
.+ +. -.+.+++...++++++++||.+|+.++..
T Consensus 158 ~d---ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 158 KD---EE-CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CC---Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 21 11 24567777778877999999999877643
No 166
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.25 E-value=0.36 Score=51.78 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=51.8
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcH--HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQP--EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 378 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
.++..+...+. +.++.+-..||.=+|.+++..+. .+.+.+ +.-..++..+.+++++||..|+.|+..++
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-GGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56667777774 45778888899999999998742 122221 24566888899999999999999999875
No 167
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.21 E-value=0.14 Score=55.15 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC
Q 001945 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA 113 (992)
Q Consensus 34 p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~ 113 (992)
|..+..|+..+....++.++..++..+.. |. ++. ....+++.|. +.++.||..++..++.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~-----~~--~~~----~~~~L~~~L~-d~~~~vr~aaa~ALg~i------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA-----QE--DAL----DLRSVLAVLQ-AGPEGLCAGIQAALGWL------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc-----cC--ChH----HHHHHHHHhc-CCCHHHHHHHHHHHhcC-------
Confidence 55667777777555566666655544421 11 111 1344556665 46677777777777642
Q ss_pred CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCC
Q 001945 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 114 ~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
..+...+.+...++++++.+|..++..++..-. .-.+.+...|++ .++.||..|+.+++.+-.-.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d-~d~~Vra~A~raLG~l~~~~-- 178 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTH-EDALVRAAALRALGELPRRL-- 178 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcC-CCHHHHHHHHHHHHhhcccc--
Confidence 345566777777777777777777655554211 112345555666 77777777777776544321
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 001945 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (992)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l 233 (992)
.+|.+. ..+.+.++.++..++..+..+
T Consensus 179 ---------a~~~L~----~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 179 ---------SESTLR----LYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ---------chHHHH----HHHcCCCHHHHHHHHHHHHHc
Confidence 122222 234556666776666665433
No 168
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.006 Score=59.69 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=116.4
Q ss_pred CCCCchHHHHHHHHHHHHHHcchhchHH---HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh
Q 001945 310 DDDLAPDRAAAEVIDTMALNLAKHVFPP---VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~ 386 (992)
+++|...-.+...+.+++..-++.+-+. ++-.+.+.+++..-.+-.+|+.+++.+.....+.+...++.++-.++..
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777778888888887666444433 4445556678888889999999999999988777777777777777777
Q ss_pred cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc--cccccchHHHHHH
Q 001945 387 LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGK 464 (992)
Q Consensus 387 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~ 464 (992)
-.+.+..||..|-.+|..+.....|. .+++.+...++..+++++..++.++.+.+...+ ....++...+.+.
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a 252 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRA 252 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHH
Confidence 77788999999999999999887652 477888888888899999999998888776654 2223444455555
Q ss_pred HHHHhcCC
Q 001945 465 LLAALENS 472 (992)
Q Consensus 465 l~~~l~~~ 472 (992)
+.+-+.+.
T Consensus 253 ~~~~~~d~ 260 (334)
T KOG2933|consen 253 AQEQGSDK 260 (334)
T ss_pred HHhhhccc
Confidence 54444443
No 169
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.20 E-value=0.014 Score=62.38 Aligned_cols=185 Identities=21% Similarity=0.272 Sum_probs=121.2
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
...+.+...+.+++|..|..+...++.+... ..++.+...+.|.++.||..|..+||.+...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE----------EAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 4455666678888999999999886665543 6788999999999999999999988766533
Q ss_pred hhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC------------HhHHHHHHHH
Q 001945 417 YESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSA 483 (992)
Q Consensus 417 ~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~~v~~~a~~~ 483 (992)
..++.++..+. |++..||..+..+|..+-.... +..++..+++.. ..+|..+...
T Consensus 105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 25566666666 7889999999999987743221 223333333322 2466666666
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhh
Q 001945 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR 563 (992)
Q Consensus 484 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r 563 (992)
++.+.. +...+.+...+.. ....+|..+...++.+.... ..+...+...+.++++.+|
T Consensus 173 l~~~~~----------~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 173 LGELGD----------PEAIPLLIELLED---EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHcCC----------hhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 665432 1223444444433 23356666777776655221 3344555666778889999
Q ss_pred HHHHHHHHHH
Q 001945 564 EYTHGFFSNI 573 (992)
Q Consensus 564 ~~~~~~~~~i 573 (992)
..+..+++.+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 8888777755
No 170
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.19 E-value=0.58 Score=52.14 Aligned_cols=308 Identities=13% Similarity=0.150 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHH
Q 001945 133 EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (992)
Q Consensus 133 ~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (992)
..|..++.-+...+..++ ...++.|+.....++......+.|.++++.+..++......... .+. .+...+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~---~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~--~R~---~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYP---LSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL--MRA---EFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCC---chHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH--HHH---HHHHHHh
Confidence 445566666666555554 36677888888888887567889999999999999876431111 111 1112111
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHHh---------hC-------C-----CCChHHHHH
Q 001945 213 QCLASGEEDVAVIAFEIFDELIES---PAPLLGDSVKSIVHFSLEVS---------SS-------H-----NLEPNTRHQ 268 (992)
Q Consensus 213 ~~l~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~l~~li~~~~~~~---------~~-------~-----~~~~~~r~~ 268 (992)
....++....-+++|..+.+. -..+.....+.+...+.... .. . +.+...-..
T Consensus 77 ---~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 77 ---DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred ---cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 112233333334444444433 21122222222222222222 00 0 012223345
Q ss_pred HHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHH--HcchhchHHHHHHHHhhh
Q 001945 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL--NLAKHVFPPVFEFASVSC 346 (992)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~l~~~l 346 (992)
.+.++..++++....+.+ ..+..++..++........+ ..-..+...++.+.. .+|.+.++.++..+....
T Consensus 154 ll~~l~nviKfn~~~l~e-~~i~~lv~~i~~iC~~Ts~~------~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~ 226 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDE-DEISSLVDQICTICKSTSSE------DDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHHhccCcH------HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHh
Confidence 566777777654332222 24455666666654333221 112456667777665 455777778887776554
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhc--C----CCChhHHHHHHHHHHHhHhhhcHHHHh--hhh
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--R----DPEQFVRGAASFALGQFAEYLQPEIVS--HYE 418 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l--~----d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~ 418 (992)
+.. .....+-.++..++..-. -...+..+...| . .++..+-..|...++.+.-..++.-.+ .+.
T Consensus 227 ~~~--~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 NSV--SLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred ccc--ccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 433 233334445555554311 123344444444 2 245566678888888876654222111 123
Q ss_pred --hHHHHHHHhcccCChHHHHHHHHHHHHHH-Hhhcccc-ccchHHHHHHHH
Q 001945 419 --SVLPCILNALEDESDEVKEKSYYALAAFC-EDMGEEI-LPFLDPLMGKLL 466 (992)
Q Consensus 419 --~ll~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~~~~~-~~~~~~l~~~l~ 466 (992)
.++|.+...++..++.|-.....++.+++ +.....+ ....+.++..+.
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~ 350 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIE 350 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHH
Confidence 49999999999888888888888888888 6555432 233444444433
No 171
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1 Score=54.78 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHcc-hhchHHHHHHHHh-hhcCCChhhHHHHHHHHHHHhhcC-HHHHHHhHHHHHHHHHhhcCCCC
Q 001945 315 PDRAAAEVIDTMALNLA-KHVFPPVFEFASV-SCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPE 391 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d~~ 391 (992)
....+..|.+..+.... ....+.++..+.. ...+..|++|.+.+..+....-.. .-....+.++|...+.+.+.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 34455556666555544 5566777777763 456678999999888776655321 11233456788899999999998
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC-hHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHh
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVK-EKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~v~-~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (992)
..||..|..+|+-+...-.-.... +.-.......+... ..++ ..|+-+|+.++-.+|-.+..+++..+..+....
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence 899999999999887764322111 11122223333222 3344 458899999999888777777777777766655
Q ss_pred cCCCHhHHHHHHHHHHHH
Q 001945 470 ENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 470 ~~~~~~v~~~a~~~l~~l 487 (992)
.++ ..++..+-++++..
T Consensus 1660 ~e~-~~i~~tvkktvseF 1676 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEF 1676 (1710)
T ss_pred CCc-hHHHHHHHHHHHHH
Confidence 544 44555555554443
No 172
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=97.19 E-value=0.11 Score=56.60 Aligned_cols=313 Identities=17% Similarity=0.131 Sum_probs=154.6
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhc
Q 001945 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNAL 428 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l 428 (992)
++.|.+|..+||.+....++ +.+..++. .+..+|++++..-|..|...+..++.......... .+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 67899999999999987643 23445554 68899999999999999999999998764321111 245566666666
Q ss_pred ccCC-----------hHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHH----HHHh
Q 001945 429 EDES-----------DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV----AAAA 491 (992)
Q Consensus 429 ~~~~-----------~~v~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l----~~~~ 491 (992)
.++. .++|..|-..+..|.+... ..-.|.++.+++.--.. .+..---+.|-...+.. ....
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~--~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEA--GPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhcccccccccccccc--CCccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 2456666666666654432 11122222222100000 00000011222222222 2222
Q ss_pred hccCc----ccHHHHHHHHHHHHhccCh--hhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHH
Q 001945 492 EQAFI----PYAERVLELLKIFMVLTND--EDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREY 565 (992)
Q Consensus 492 ~~~~~----~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 565 (992)
+..-. +-++.--..+...+..... .....|-.+.-+-+.++-..=|+++.|.+.++|+.+-+ .++..++..
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~---Een~~LQ~r 332 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKR---EENELLQQR 332 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhc---cccHHHHHH
Confidence 11100 0010000111111111000 11111211111111111111145666666666665432 447789999
Q ss_pred HHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCC--CcchhcccCCCCCCCchhhhhccccceeeecchhh
Q 001945 566 THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDG--SDDENINGFGGVSSDDEAHCERSVRNISVRTGVLD 643 (992)
Q Consensus 566 ~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (992)
+..++..++..+...-..--++|+..|...+..|......... ...+.+-......+-.+..+... ..-..+ ..--
T Consensus 333 sA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~-~~~~~~-~a~I 410 (441)
T PF12054_consen 333 SAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAAS-EEREQK-EARI 410 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccccccccccc-chhhhh-hhHH
Confidence 9999999999888555556789999999988766543322221 11111100000000000000000 000000 0112
Q ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHH
Q 001945 644 EKAAATQALGLFALHTKSSYAPFLEESLKI 673 (992)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (992)
.|++|..+|..++..+|..++.-++.+++.
T Consensus 411 ~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~~ 440 (441)
T PF12054_consen 411 QRRGAELALEQLAKRFGSSLFEKLPKLWEC 440 (441)
T ss_pred HhcCHHHHHHHHHHHHhHHHHHhhhHHHhh
Confidence 578899999999999999988888877654
No 173
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.18 E-value=0.00067 Score=42.01 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.0
Q ss_pred hHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001945 867 VMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (992)
Q Consensus 867 ~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~ 896 (992)
++|.+++.++|++++||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999864
No 174
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.16 E-value=0.2 Score=51.59 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH---HHHHH-hHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhc
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EWMKE-KLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---~~~~~-~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
|.+++++..++.|.|....-++..++|.++..-. ..+.. .+..++..+.+ .-.|.+-+++.+++.+|..+.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 6689999999999999999999999999997532 22222 23344444444 2236788899999999998865443
Q ss_pred HHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc---ccccchHHHHHHHHHHhcCCCHh-HHHHHHHHHH
Q 001945 411 PEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE---EILPFLDPLMGKLLAALENSPRN-LQETCMSAIG 485 (992)
Q Consensus 411 ~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~-v~~~a~~~l~ 485 (992)
.. .... ..+...++..+.-..|+|.-.-...++-+...-+. ++. --+.++++|..--.+++.. +..+..+.+.
T Consensus 394 nk-a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~-kn~~l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 394 NK-AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELA-KNPELFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred ch-hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHh-cCHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence 21 1122 45777888888877788877777777666544321 111 1235566666665555543 6666666666
Q ss_pred HHHHH
Q 001945 486 SVAAA 490 (992)
Q Consensus 486 ~l~~~ 490 (992)
-++..
T Consensus 472 ~lIkH 476 (604)
T KOG4500|consen 472 GLIKH 476 (604)
T ss_pred HHHHh
Confidence 66654
No 175
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.75 Score=52.28 Aligned_cols=328 Identities=13% Similarity=0.146 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhccC-hhhhHh-HHHHHHHHHHHHHhhchhhccCChHHHHHHHHhc-cCCCCchhhHHHHHHHHHHHHHc
Q 001945 501 RVLELLKIFMVLTN-DEDLRS-RARATELLGLVAESVGRARMEPILPPFVEAAISG-FGLEFSELREYTHGFFSNIAGVL 577 (992)
Q Consensus 501 ~~~~~l~~~l~~~~-~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~r~~~~~~~~~i~~~~ 577 (992)
-+...+.+.+...+ +++.-. .+.++-++-.++...|. .-.+.++.+++...+. ....++++...+...+|..+.-+
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~-t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l 540 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGE-TESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWL 540 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCc-chhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHH
Confidence 34455666665443 333322 34556667777766654 3445566666654432 12237888888889999999888
Q ss_pred ccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHH
Q 001945 578 EDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFAL 657 (992)
Q Consensus 578 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~ 657 (992)
++. .-|++..+|.|+..+... +.-..+...+..+++
T Consensus 541 ~e~-P~~ln~sl~~L~~~Lh~s-------------------------------------------k~s~q~i~tl~tlC~ 576 (982)
T KOG2022|consen 541 GEH-PMYLNPSLPLLFQGLHNS-------------------------------------------KESEQAISTLKTLCE 576 (982)
T ss_pred hcC-CcccCchHHHHHHHhcCc-------------------------------------------hHHHHHHHHHHHHHH
Confidence 854 457888888888766311 122456667999999
Q ss_pred HhcccccchHHHHHHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHh----h
Q 001945 658 HTKSSYAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMT----E 731 (992)
Q Consensus 658 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 731 (992)
.++..+.||..+++..+...+.. .....|.....+++.++.+.. ++...+++..++..++..+. .
T Consensus 577 ~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~---------pEe~~kyl~~lin~il~qle~~l~~ 647 (982)
T KOG2022|consen 577 TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK---------PEEIPKYLMKLINPILSQLEINLAP 647 (982)
T ss_pred hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc---------HHhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999887776543 345678889999999988753 34444555555555544432 2
Q ss_pred C-ChHHHHHH---HHHHHHHHHHHhC-Cc------------------ccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 001945 732 D-DDKDVVAQ---ACTSIVEIINDYG-YM------------------AVEPYMSRLVDATLLLLREESTCQQPDNDSDIE 788 (992)
Q Consensus 732 ~-~~~~~~~~---~~~~l~~~~~~~g-~~------------------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 788 (992)
+ ++++.+.. .+.++.++...+- +. .......++++.+.+++..-. +
T Consensus 648 ~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~--~--------- 716 (982)
T KOG2022|consen 648 GIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL--G--------- 716 (982)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh--c---------
Confidence 1 23333322 2344444444321 10 112244556666655554221 1
Q ss_pred CcccccchHHHHHHHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHH-hhcCCchhhcHhh
Q 001945 789 DDDDTAHDEVIMDAVSDLLPAFAKSMGPHF-APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVA-RDMGSPIAAYVDR 866 (992)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~-~~~~~~~~~~~~~ 866 (992)
...+.+..+.....=.+..++.| .|+++.+.+.+.+..........-..+.+++.... +.+++.....+..
T Consensus 717 -------~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~ 789 (982)
T KOG2022|consen 717 -------LSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMAN 789 (982)
T ss_pred -------chhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 01122233222222244445567 67888888888885433211110111111111111 1112222222222
Q ss_pred hHHHHHHhcC----CCChHhHHHHHHHHHHHHhhcCcc
Q 001945 867 VMPLVLKELA----SPDAMNRRNAAFCVGELCKNGGES 900 (992)
Q Consensus 867 ~~~~ll~~l~----~~~~~vr~~a~~~l~~l~~~~~~~ 900 (992)
.+...+..+. .++++.-..-..++.++.+..|.-
T Consensus 790 ~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~ 827 (982)
T KOG2022|consen 790 AFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKF 827 (982)
T ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCc
Confidence 3333333333 456778888888999998888763
No 176
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.69 Score=51.12 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=81.4
Q ss_pred hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH
Q 001945 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
.+++..++..+.....+++-.+|+-.+..++.+.....+.-....+.+...+...+.|..|.||..|..+|+++-..-++
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 44566677777778889999999999999999988433222334667888899999999999999999999998753221
Q ss_pred HHHhhhhhHHHHHHHhcc-cCChHHHHHHHHHHH
Q 001945 412 EIVSHYESVLPCILNALE-DESDEVKEKSYYALA 444 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~ 444 (992)
+ . -.+.+.+...++ ||++.||..|...+.
T Consensus 160 e---e-~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 E---E-CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred C---c-ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 1 1 135566666665 778999998887664
No 177
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=2.5 Score=56.15 Aligned_cols=525 Identities=14% Similarity=0.116 Sum_probs=255.9
Q ss_pred HHHHHhhhhhh---hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhh
Q 001945 140 ILFSSLTETIG---QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (992)
Q Consensus 140 ~~l~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 216 (992)
.++-++|-..| ..+.++++-++..+..+++. +++++..++..+.-++....+......+....+.+++.+...+.
T Consensus 699 dLfvELclTvPvRLS~Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~ 776 (3550)
T KOG0889|consen 699 DLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLR 776 (3550)
T ss_pred HHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhcc
Confidence 33444444433 23467888888888888886 67888999999988888775433333356667778888887776
Q ss_pred cC-CHHHHHHHHHHHHHHhcCCccchH-----------------------------HHHHHHHHHHHHHhhCCCCChHHH
Q 001945 217 SG-EEDVAVIAFEIFDELIESPAPLLG-----------------------------DSVKSIVHFSLEVSSSHNLEPNTR 266 (992)
Q Consensus 217 ~~-~~~~~~~~~~~l~~l~~~~~~~~~-----------------------------~~l~~li~~~~~~~~~~~~~~~~r 266 (992)
.. +......|+++|+.+...+..++. -.+...+........+...+...|
T Consensus 777 ~~~~~s~s~~a~rILGKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~ 856 (3550)
T KOG0889|consen 777 PVPNYSYSHRALRILGKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYR 856 (3550)
T ss_pred CCCCchHHHHHHHHHHhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchH
Confidence 53 556778899999998775432221 123345555555555555577788
Q ss_pred HHHHHHHHHHHHhhHhHhhhcC-ChHHHHHHHh---hhhccCCC-------CCCCCCCchHHHHHHHHHHHHHHc-chhc
Q 001945 267 HQAIQIISWLAKYKYNSLKKHK-LVIPILQVMC---PLLAESNE-------AGEDDDLAPDRAAAEVIDTMALNL-AKHV 334 (992)
Q Consensus 267 ~~a~~~l~~l~~~~~~~~~~~~-~~~~il~~l~---~~l~~~~~-------~~~d~~~~~~~~a~~~l~~l~~~~-~~~~ 334 (992)
.++...+.......-......+ -...+.+..- ....+... .........+.....++..+.-.. .++.
T Consensus 857 ~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~el 936 (3550)
T KOG0889|consen 857 KQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKEL 936 (3550)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHH
Confidence 8887766533221110000000 0011111111 00111000 000011111222112211111111 1111
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc-----------CHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 001945 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEG-----------CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (992)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~-----------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (992)
.+...+++... .|.-++.+....... ......-.....++.+..++...+..++.++..++.
T Consensus 937 r~~a~~~~~~i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~ 1009 (3550)
T KOG0889|consen 937 RDEAQDFLEAI-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALK 1009 (3550)
T ss_pred HhhhHHHHHHH-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 12111111111 122222222111110 000000112346789999999999999999999998
Q ss_pred HhHhhhcHH--------HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHhcCCCH
Q 001945 404 QFAEYLQPE--------IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPR 474 (992)
Q Consensus 404 ~l~~~~~~~--------~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~ 474 (992)
.+....... ..+.+..+++.+++...++...-+...+.++..+++..+.. +..+..+++..+.-.+.+...
T Consensus 1010 ~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~ 1089 (3550)
T KOG0889|consen 1010 VIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTES 1089 (3550)
T ss_pred HHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCcc
Confidence 886654211 23466778888888888887777777777888887777622 334555677777766665433
Q ss_pred hHHH----HHHHHHHHHHHHhhc-----cCc-ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCCh
Q 001945 475 NLQE----TCMSAIGSVAAAAEQ-----AFI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (992)
Q Consensus 475 ~v~~----~a~~~l~~l~~~~~~-----~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (992)
++.. .+-.++-.+....-. .-. .....++..+..-+.+ +...+|..+..++..++...|+ .....+
T Consensus 1090 e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n---pN~~VR~~~~~~L~~i~~~s~~-~v~~L~ 1165 (3550)
T KOG0889|consen 1090 EVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN---PNSDVREFSQKLLRLISELSGK-SVVKLL 1165 (3550)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 3222 111222211111110 011 1112222223222322 3336788888888888866554 222233
Q ss_pred HHHHHHHHh-ccCCCCch-hhHHHHHHHHH--HHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCC
Q 001945 545 PPFVEAAIS-GFGLEFSE-LREYTHGFFSN--IAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGV 620 (992)
Q Consensus 545 ~~i~~~l~~-~l~~~~~~-~r~~~~~~~~~--i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (992)
.++-+.+.. ....+.+. -+...+.-+.. .|...++.+-.|-+........... +.+.++++..+...
T Consensus 1166 ~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~--------La~~~~~~~~~i~k- 1236 (3550)
T KOG0889|consen 1166 EPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIA--------LADAEEDELATIQK- 1236 (3550)
T ss_pred HHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHH--------hhhhhhhhhhhhhc-
Confidence 333333311 11111100 12222222222 3333444444444333321111100 00000110000000
Q ss_pred CCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 001945 621 SSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS---SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNIL 697 (992)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~ 697 (992)
....+..++....|..++.+++......+- ...+|.++++..+.+.+.....++-..+..++-...
T Consensus 1237 -----------~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1237 -----------TSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred -----------ccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Confidence 011112233345678888888876655442 456788999999998888777787777777665443
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.075 Score=60.82 Aligned_cols=140 Identities=20% Similarity=0.281 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHh
Q 001945 351 PKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNA 427 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~ 427 (992)
.+.|.-|.+.|+.++.+.+-.-...+ ..++...+..++| +++..|.-++.|||.+-+.+... ....-...-..+...
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 57888899999999998765444443 4678888899998 58999999999999998877432 111223455778888
Q ss_pred cccCChHHHHHHHHHHHHHHHhhccccc----------------cchHHHHH----HHHHHhcCCCHhHHHHHHHHHHHH
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEIL----------------PFLDPLMG----KLLAALENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~~----------------~~~~~l~~----~l~~~l~~~~~~v~~~a~~~l~~l 487 (992)
|.|+.++||.+|+.||+.|+....+.+. ...+.++. .+...+++..+-+|.+...+++..
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999986421111 11233333 556667777788888877777776
Q ss_pred HHH
Q 001945 488 AAA 490 (992)
Q Consensus 488 ~~~ 490 (992)
+..
T Consensus 731 ~~g 733 (1387)
T KOG1517|consen 731 VVG 733 (1387)
T ss_pred HHh
Confidence 653
No 179
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.94 E-value=0.78 Score=49.34 Aligned_cols=140 Identities=9% Similarity=0.039 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH--Hh--------------h
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VS--------------H 416 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~--------------~ 416 (992)
.-...+.++..+....+..+..+...-+|.++..+-+....+|..|..++..+...++++. .. +
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~ 229 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccH
Confidence 3345566777778888888888888888899998888888999998877777766665421 00 1
Q ss_pred hhhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 417 YESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 417 ~~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.+.+.+.+...+.+ .+...--....++..++....-.-.+++...+.....+++++++.+|..|+.+|..++....
T Consensus 230 ~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 11122334444444 22222233344444444221123347888999999999999999999999999999998654
No 180
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.91 E-value=0.014 Score=53.54 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=96.0
Q ss_pred chHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHh
Q 001945 334 VFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~ 407 (992)
..|.+++.+...++++ +|..|..++..+|.++.--+-..+ .+..... +.+........ ...
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhc
Confidence 3577777777776554 699999999999999875332221 1111111 11122222111 111
Q ss_pred hhcHHHHhhh-hhHHHHHHHhcccCC-hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 001945 408 YLQPEIVSHY-ESVLPCILNALEDES-DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (992)
Q Consensus 408 ~~~~~~~~~~-~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 485 (992)
...+...+++ ..++..++..++|++ ..-...++.++..+++..+....||++.+++.++..+...+...++..+.-++
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2212233444 456788999999886 33455688999999988877789999999999999999877799998888888
Q ss_pred HHHHH
Q 001945 486 SVAAA 490 (992)
Q Consensus 486 ~l~~~ 490 (992)
.++..
T Consensus 154 ~lv~i 158 (160)
T PF11865_consen 154 DLVSI 158 (160)
T ss_pred HHHHH
Confidence 77654
No 181
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.82 E-value=0.17 Score=52.63 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=89.2
Q ss_pred HHH-HHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 337 PVF-EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 337 ~~~-~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
.++ ..+...+.+.+...|..|+.++|..+--..+... +.++.+...+...+..||..|++++..+....+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 444 3445778899999999999999988765443333 33555555555559999999999999998877654322
Q ss_pred h---------hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC
Q 001945 416 H---------YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (992)
Q Consensus 416 ~---------~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (992)
. ...++..+.+.+.+.++.+|..++.++..++-.-. +.+ .+.++..|+-..-+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~--i~~-~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR--ISD-PPKVLSRLLLLYFN 163 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHHcC
Confidence 1 24678888888988889999999999998874421 111 34555555554433
No 182
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.77 E-value=0.093 Score=56.41 Aligned_cols=119 Identities=17% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
+..+...+.+.+..+|.++..+|+.+... ...+.+...+.++++.||.+++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~----------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGAHRH----------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------
Confidence 56666677788888888888888865443 556777778888899999888877765221
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
.-.+.+...++|+++.||..|+.+++.+-.. ..++.|...+.+.++.||..++.+++.+.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 1234566677788889999999888876321 12333556678888899998888876653
No 183
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.5 Score=51.99 Aligned_cols=138 Identities=16% Similarity=0.207 Sum_probs=101.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHh--CCCCc--------HH---HHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHH
Q 001945 10 IQFLMPDNDARRQAEDQIKRLA--KDPQV--------VP---ALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (992)
Q Consensus 10 ~~~~s~d~~~r~~A~~~l~~~~--~~p~~--------~~---~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~ 76 (992)
+++..+|.++|..|...+-+++ .+|+. ++ ..+.-+-+++.|.+|.-|...+.+.+.+.|.-+|+.+.
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4455678899999988887776 35544 11 12222334778999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 001945 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (992)
Q Consensus 77 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~ 147 (992)
..+...+...+..|+...||-.....+..++..-...+-..-++|.+-..+.+....+|.++.+++..+=.
T Consensus 261 ~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 88888888888888888999888888887775433333344556666666777777778777777776643
No 184
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.72 E-value=2.1 Score=50.96 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=108.2
Q ss_pred CCCc--chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccc-ccHHHHHH---------HHHHhcCCCCChHHHHHHH
Q 001945 114 GEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQA---------LLLKCLQDETSNRVRIAAL 181 (992)
Q Consensus 114 ~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~i~~---------~l~~~l~~~~~~~vr~~a~ 181 (992)
.+|+ .++..+...+-++.|..|+++...+..+.+.-+..+. ...+.++- .+-....+..-..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4674 4677777778888999999999999888876554332 12222222 2222233323456999999
Q ss_pred HHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCC
Q 001945 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL 261 (992)
Q Consensus 182 ~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~ 261 (992)
++|+.+...... ..+...++.+.++...+.++.+.+.+..+...+......+...+..+++++..-.++.
T Consensus 151 q~L~~~l~~~~~--------s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-- 220 (1549)
T KOG0392|consen 151 QALGAYLKHMDE--------SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-- 220 (1549)
T ss_pred HHHHHHHHhhhh--------HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Confidence 999998887732 2334445555555555677777766666655544333333344555556655555544
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccC
Q 001945 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES 304 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~ 304 (992)
++++|..|..++..++...++.... -+..++..+...+.+.
T Consensus 221 ~ddv~~~aa~~l~~~~s~~v~l~~~--~i~~lv~~l~~~l~~l 261 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQVKLMVQ--KIAKLVHTLWSFLLEL 261 (1549)
T ss_pred chHHHHHHHHHhhhhhHHHHhhhHh--HHHHHHHHHHHHHHHh
Confidence 7889999988888776655332211 3445555555555444
No 185
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.69 E-value=0.14 Score=52.56 Aligned_cols=165 Identities=15% Similarity=0.212 Sum_probs=114.1
Q ss_pred CChhhHHHHH-HHHHHHhh-c-CHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH----Hh--hhhh
Q 001945 349 ASPKYREAAV-TAIGIISE-G-CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI----VS--HYES 419 (992)
Q Consensus 349 ~~~~~r~~al-~~l~~i~~-~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~--~~~~ 419 (992)
+.|+...+.. ..+..+.. . ....+..+.+.++|.++..++|.++.+|..++.++..+....+... .. ..+.
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 3677655322 34444443 3 3456778899999999999999999999999999999999776543 22 2333
Q ss_pred HHHHHHHhcc--------cCChHHHHHHHHHHHHHHHhhc-ccccc---chHHHH-HHHHHHhcC----CCHhHHHHHHH
Q 001945 420 VLPCILNALE--------DESDEVKEKSYYALAAFCEDMG-EEILP---FLDPLM-GKLLAALEN----SPRNLQETCMS 482 (992)
Q Consensus 420 ll~~l~~~l~--------~~~~~v~~~a~~~l~~l~~~~~-~~~~~---~~~~l~-~~l~~~l~~----~~~~v~~~a~~ 482 (992)
+-+++..++. +.+..+-..+..++..++.... ..-.+ .+..++ +.++..+.. +...++...++
T Consensus 167 ~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~ 246 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQ 246 (282)
T ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHH
Confidence 4455555555 4456677888899998877542 11112 222332 324444332 23778899999
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 001945 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 483 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (992)
.+..++..+|-....|++.+++.+.+++.+.
T Consensus 247 ~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 247 QLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999988653
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.67 E-value=0.57 Score=48.79 Aligned_cols=155 Identities=20% Similarity=0.105 Sum_probs=96.2
Q ss_pred chHHHHH-HhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 118 DLLPFLF-QFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 118 ~ll~~l~-~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
.++..++ ..++++++.+|..|+.|++-.+-... ....+.++.+...++. .+..++..|++++.-++...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555444 67888899999999999998764433 2334556677777766 6899999999999998766542210
Q ss_pred -HHH---HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccch-HHHHHHHHHHHHHHhhCCCC--ChHHHHHH
Q 001945 197 -VVK---FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEVSSSHNL--EPNTRHQA 269 (992)
Q Consensus 197 -~~~---~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~li~~~~~~~~~~~~--~~~~r~~a 269 (992)
... .......++..+.+.+.+.+++++..+++.+..+.-...-.- ...+..++-..+ ++.. +...|..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF----~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYF----NPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc----CcccCCcHHHHHHH
Confidence 000 012234577777777878888999999999998764432222 233333433332 2322 23455444
Q ss_pred HHHHHHHHHhhH
Q 001945 270 IQIISWLAKYKY 281 (992)
Q Consensus 270 ~~~l~~l~~~~~ 281 (992)
-.|+...+...+
T Consensus 177 ~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 177 SVFFPVYASSSP 188 (298)
T ss_pred HHHHHHHHcCCH
Confidence 445555554443
No 187
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.63 E-value=0.021 Score=52.91 Aligned_cols=141 Identities=23% Similarity=0.283 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcccCCC---CCCcchHHHH------------HHhhcCCCHHHHHHHHHHHHHhhhhhhhc-------
Q 001945 95 VRRASANVVSIIAKYAVPA---GEWPDLLPFL------------FQFSQSEQEEHREVALILFSSLTETIGQT------- 152 (992)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l------------~~~l~~~~~~~~~~al~~l~~l~~~~~~~------- 152 (992)
||..+..++..+++...++ +.|+.++|.- .-.+.|+++.+|..|+.++..+.+.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 7888889999988873332 5787777755 23346778899999999999998765422
Q ss_pred ------ccc-------cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCC
Q 001945 153 ------FRP-------HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGE 219 (992)
Q Consensus 153 ------~~~-------~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 219 (992)
|.+ .+.++-..+...++.+.+..+....++|+..++...+ ...- -.++++.++..+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP--Y~rL-~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP--YHRL-PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC--hhhc-CHhHHHHHHHHHHHHHhcCC
Confidence 222 2233455666677766788888899999999987764 1111 14677888888888888888
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 001945 220 EDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 220 ~~~~~~~~~~l~~l~~~~~ 238 (992)
.+++..++.++..++...+
T Consensus 159 ~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 8999999988888876543
No 188
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.63 E-value=0.041 Score=59.65 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcH----HHHHHHHh----cCCChhHHHHHHHHHHHhhhhcccCCCH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVV----PALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSP 73 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~----~~l~~il~----~~~~~~~r~~a~~~l~~~i~~~~~~~~~ 73 (992)
.-+.+++..+.|+|+..|......|..++. -++.- ..+.+++. .+..+.-=.-...++...+.+.-..+.+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 456788888999999999999999988764 34332 22333332 2222221122334455555554456778
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-hc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QT 152 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~ 152 (992)
+++..+...++.+.....-...-..+..++..+...+. .--..++..++...--.++.....-+.-+..+++..+ ..
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 88888888888888764556667888999998887652 1334466666666655566566667788888887665 44
Q ss_pred ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHh--hcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHH
Q 001945 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSF--LEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEI 229 (992)
Q Consensus 153 ~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~ 229 (992)
+......++..+..++++ ++..|...|+....+= .....+. -..++|.+...+.+..... +..++..+..+
T Consensus 291 f~~i~~~lf~~la~ci~S-~h~qVAErAl~~w~n~~~~~li~~~-----~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~v 364 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISS-PHFQVAERALYFWNNEYFLSLISQN-----SRVILPIIFPALYRNSKNHWNQTVRNLAQNV 364 (409)
T ss_dssp HHHHHHHHHHHHHHHHTS-SSHHHHHHHHGGGGSHHHHHHHHCT-----HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 667778889999999999 9999988887654321 2222111 2335566666655433222 45688888888
Q ss_pred HHHHhcCCccchHHHHH
Q 001945 230 FDELIESPAPLLGDSVK 246 (992)
Q Consensus 230 l~~l~~~~~~~~~~~l~ 246 (992)
+..+.+..+..++....
T Consensus 365 l~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 365 LKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHTTSHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 88888887776666443
No 189
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.039 Score=60.51 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=111.7
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
.-+.+.+.+.+.++-.|.+++++++...-+.... ..+..++.. .+|.+..||++|..+||-++..-+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------ 587 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------ 587 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeEecCh------
Confidence 3455667778889999999988776655443211 233334443 679999999999999997765432
Q ss_pred hhhHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 417 YESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
..+|..+..|.+. ++.||..+.-+|+-.|...+.. .-+..|-++..++..-||..|+-+++-+.-...+..
T Consensus 588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 2556666666644 7899999999999888765532 234444455567778899999999998887777778
Q ss_pred cccHHHHHHHHHHHHhccC
Q 001945 496 IPYAERVLELLKIFMVLTN 514 (992)
Q Consensus 496 ~~~~~~~~~~l~~~l~~~~ 514 (992)
.|-+..+...+.+.+....
T Consensus 660 ~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred CchHHHHHHHHHHHhhhhh
Confidence 8888888888888776543
No 190
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.55 E-value=1.9 Score=48.44 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHcc-hhchHHHHHHHH--hh-----hcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh
Q 001945 314 APDRAAAEVIDTMALNLA-KHVFPPVFEFAS--VS-----CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~--~~-----l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (992)
.+...|...++++...+. ..++..++.... .. ..-.++..|.--+..|..-... ....+.++..+..
T Consensus 252 ~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~ 326 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFD 326 (501)
T ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhc
Confidence 566667777777665555 444444444433 10 0012344554444444332111 1234677888888
Q ss_pred hcCCC--ChhHHHHHHHHH---HHhHhhhcHHHHhhh-hhHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHhhc
Q 001945 386 ALRDP--EQFVRGAASFAL---GQFAEYLQPEIVSHY-ESVLPCILNALE--------DESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 386 ~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~-~~ll~~l~~~l~--------~~~~~v~~~a~~~l~~l~~~~~ 451 (992)
++.++ +.++|..++..+ ......+++.....+ +.++..+...++ ..+...|..+..+|+.+++..+
T Consensus 327 ~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 327 GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 88877 789999999999 877777766544432 444555555552 1246789999999999999887
Q ss_pred cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 452 ~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
..+..- -.++..|+..+.+...+++..+-+|+++++.+....-
T Consensus 407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 654322 3566677777788889999999999999998876543
No 191
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=1.2 Score=45.57 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHcc--hhchHH-HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHH-HHHHHHHhhcC-C
Q 001945 315 PDRAAAEVIDTMALNLA--KHVFPP-VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALR-D 389 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~--~~~~~~-~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~-d 389 (992)
.+..+..-+..+++.+. .++.+. .+..+...+++.+...|..|.+.+|.++.+.+......++ ..++.++..+. +
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 34556666666666665 222211 1222233789999999999999999999988765444332 25666777766 6
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhccc--CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~ 466 (992)
.+..+|..|+.+++.+.+..++....++ -.=...|...+++ .+.+.+..+...+..++......-...-...++...
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 6778999999999999999877555443 1225667777777 456778889999999887653222222222233322
Q ss_pred HHh-cCCCHhHHHHHHHHHHHHHHHh
Q 001945 467 AAL-ENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 467 ~~l-~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
..+ ...+..+++.++.++-+.....
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHH
Confidence 222 2345677787777766655443
No 192
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.46 E-value=0.03 Score=51.40 Aligned_cols=149 Identities=15% Similarity=0.318 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchH
Q 001945 718 LDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDE 797 (992)
Q Consensus 718 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (992)
.+.+++.+++.++.+.+..++.++++++|-+ | ++.|+.-+.. ..... +....+..+...+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil----G--ALDP~~~k~~-------~~~~~------~~~~~~~~~~~~~~ 68 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGIL----G--ALDPYKHKSI-------QKSLD------SKSSENSNDESTDI 68 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----c--ccCcHHHhcc-------cccCC------ccccccccccchhh
Confidence 5678888888888887889998888888743 2 2333322210 11000 00000000000111
Q ss_pred HHHHHHHhHHHHHHHHhCCChHHHHH-HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcC
Q 001945 798 VIMDAVSDLLPAFAKSMGPHFAPIFA-KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 876 (992)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 876 (992)
.+ +....+.....|+. ..+..+++.++|+.-...+..++.++-.+++..|....+|+++++|.++..++
T Consensus 69 ~l----------~~~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 69 SL----------PMMGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIR 138 (160)
T ss_pred HH----------hhccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHH
Confidence 10 11112223344444 45677888888776555677888898899988898889999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHh
Q 001945 877 SPDAMNRRNAAFCVGELCK 895 (992)
Q Consensus 877 ~~~~~vr~~a~~~l~~l~~ 895 (992)
..+...|+.-..-|+.++.
T Consensus 139 ~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 139 TCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 8888888888888887764
No 193
>PF05536 Neurochondrin: Neurochondrin
Probab=96.44 E-value=2.3 Score=48.11 Aligned_cols=181 Identities=11% Similarity=0.099 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHhhcCHHHH--HHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHh
Q 001945 352 KYREAAVTAIGIISEGCAEWM--KEKLESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNA 427 (992)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~--~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~ 427 (992)
..+.-|+..+..++.. +.+ .+.+-.-+|.++..+...+. .+..-|+.+|..++..- ......+ .+.++.+.+.
T Consensus 72 ~~~~LavsvL~~f~~~--~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRD--PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHcCC--hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHH
Confidence 3455566666666652 222 24456678888998876655 88888999999998442 2222222 4677888887
Q ss_pred cccCChHHHHHHHHHHHHHHHhhcccc----ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc------cCcc
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEI----LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ------AFIP 497 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~------~~~~ 497 (992)
+.+ .+.....+...+..++...+... ...+..+++.+...+.......+-.++..++.+....+. .-..
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 777 46778889999988887665322 234556777777777766667777888888888776631 1123
Q ss_pred cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh
Q 001945 498 YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (992)
Q Consensus 498 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 538 (992)
....+...+..++++.- ....|..++.+.+.+....|.+
T Consensus 228 W~~~l~~gl~~iL~sr~--~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRL--TPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhChH
Confidence 56677888888887643 2344677888888888888864
No 194
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.38 E-value=0.034 Score=46.85 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=73.4
Q ss_pred HhhhhhHHHHHHHhccc----CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 414 VSHYESVLPCILNALED----ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
.+++-.++..+-..++| .+..-|..+..++..+++..++.+.++.++++..|...+..+ +++..++++|..++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 44555666666666666 345678899999999999778888888888888888887664 899999999999999
Q ss_pred Hhh-ccCcccHHHHHHHHHHHH
Q 001945 490 AAE-QAFIPYAERVLELLKIFM 510 (992)
Q Consensus 490 ~~~-~~~~~~~~~~~~~l~~~l 510 (992)
..+ +++.|++++++-.+.+.+
T Consensus 84 ~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 TLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HCCHHHHHHHHHHHHHHHHHhc
Confidence 887 567777777665555443
No 195
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.055 Score=57.40 Aligned_cols=155 Identities=18% Similarity=0.230 Sum_probs=113.5
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (992)
-..+.+.+.+.+.-.|+++.++++...-+.... .++..++.. .+|.+..||.+|.-+||-+|..-.
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNL------GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence 345667778888899999988877655553321 445555555 789999999999999997775532
Q ss_pred hhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc
Q 001945 418 ESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI 496 (992)
Q Consensus 418 ~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 496 (992)
..++..++.|.+ .++.||....-+|+-.|...+.. . ....|-.++.++..-||..|+-+.+-+...+.+.+.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~---~---a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK---V---ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---H---HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 255556666654 46899999999999888765532 2 233444455677888999999999999988888888
Q ss_pred ccHHHHHHHHHHHHhcc
Q 001945 497 PYAERVLELLKIFMVLT 513 (992)
Q Consensus 497 ~~~~~~~~~l~~~l~~~ 513 (992)
|-+..+...+.+++...
T Consensus 658 p~v~~I~k~f~~vI~~K 674 (926)
T COG5116 658 PNVKRIIKKFNRVIVDK 674 (926)
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 88888888887777643
No 196
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.32 E-value=0.41 Score=51.38 Aligned_cols=156 Identities=18% Similarity=0.344 Sum_probs=102.6
Q ss_pred cchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhC-------ChHH
Q 001945 664 APFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTED-------DDKD 736 (992)
Q Consensus 664 ~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 736 (992)
.-|+.++++.+.. .++..|..|+.+|.. +.+ +..++|.+...+.+. .+..
T Consensus 206 QlYy~~It~a~~g----~~~~~r~eAL~sL~T------------DsG-------L~~LlPyFv~fIae~vs~ni~~~nL~ 262 (576)
T KOG2549|consen 206 QLYYKEITEACTG----SDEPLRQEALQSLET------------DSG-------LQQLLPYFVTFIAEGVSVNIVQNNLE 262 (576)
T ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHhhcc------------Ccc-------HHHHHHHHHHHHhhheeeccccccHH
Confidence 3477777777665 566778877775521 111 223334443333322 3444
Q ss_pred HHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhC
Q 001945 737 VVAQACTSIVEIINDYGYM-AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG 815 (992)
Q Consensus 737 ~~~~~~~~l~~~~~~~g~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 815 (992)
.+..+++.+..+++. +. .+.+|+..++|.++..+-.+.-|...+ .+..|.+++-+++++..+++.++
T Consensus 263 lL~~lm~m~rSLl~N--p~i~lepYlh~L~PSvlTCvVsk~l~~~p~----------~dnhwaLRDfAA~ll~~i~k~f~ 330 (576)
T KOG2549|consen 263 LLIYLMRMVRSLLDN--PNIFLEPYLHQLVPSVLTCVVSKNLCLRPE----------LDNHWALRDFAARLLAQICKNFS 330 (576)
T ss_pred HHHHHHHHHHHHhcC--CccchhhHHHHHhhHHHHhhhhhhccCCcc----------ccchHHHHHHHHHHHHHHHHhhh
Confidence 444555555555442 23 458899999999999886665554322 45789999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhcCC-CCccchhhHHHHHHHHHh
Q 001945 816 PHFAPIFAKLFDPLMKFAKSS-RPLQDRTMVVATLAEVAR 854 (992)
Q Consensus 816 ~~~~~~~~~l~~~l~~~l~~~-~~~~~r~~al~~l~~~~~ 854 (992)
......-.+++..+.+.+.|. .+......++..|.++..
T Consensus 331 ~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 331 TLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 987776678888888877665 444567778888777553
No 197
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.26 E-value=1.1 Score=50.20 Aligned_cols=172 Identities=11% Similarity=0.100 Sum_probs=116.7
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc
Q 001945 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (992)
|...+++.+.+.+...+. ....-...+-++.+.+..+ +++...++|.+...+++.+.+....++..+..+++.
T Consensus 346 ~~~~~~p~l~pi~~~~~~------~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~ 419 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDP------KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES 419 (700)
T ss_pred hhhhhhHHHHHHhccCCc------ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh
Confidence 455677777777665322 1344556666777888887 778899999999999999999999999999999987
Q ss_pred CHHHHHHhHHHHHHHHHhh-cCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHH
Q 001945 368 CAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (992)
Q Consensus 368 ~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (992)
....... ..|+|.+... +...+..|+..++.|++.+.+.+.. .... ..+..++++....++.+..........+
T Consensus 420 iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 420 IDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK--AAVL-DELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred ccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH--HHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6532222 3566666655 4578899999999999999976632 1222 3445566666666677777766666666
Q ss_pred HHhhccccccchHHHHHHHHHHhcC
Q 001945 447 CEDMGEEILPFLDPLMGKLLAALEN 471 (992)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (992)
+-..+....-..+.+++.++.+...
T Consensus 495 ~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 495 ALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred Hhhcccceeeehhhhhhhhhhhhhc
Confidence 5444332233455666666665443
No 198
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=4.6 Score=49.71 Aligned_cols=337 Identities=15% Similarity=0.170 Sum_probs=172.2
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHhhHhHhhh---
Q 001945 214 CLASGEEDVAVIAFEIFDELIES---PAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKK--- 286 (992)
Q Consensus 214 ~l~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~l~~li~~~~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~--- 286 (992)
++...+.+++.....|+.++... ..++-+..+..++.+++..+.- .+.....-.+-...+.+++..+...+-.
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 45567777887777777776543 3456667888888877755432 1222211122234555555544222111
Q ss_pred -cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 001945 287 -HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (992)
Q Consensus 287 -~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~ 363 (992)
..++..++..++....+.-. ......++.+...+. +.+-..++..+...+-.+....+..|...=..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~----------~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHP----------KKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASD 207 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHH
Confidence 12334444444444432211 001112222222221 22223344444333333333344444444444
Q ss_pred HhhcCHHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHH
Q 001945 364 ISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYA 442 (992)
Q Consensus 364 i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~ 442 (992)
+++.|.+.+.+.+...+. .+...- ..-..++......+-.+.... ...+-.++|.|..-|...+..+|..|...
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~~~----p~ll~~vip~l~~eL~se~~~~Rl~a~~l 282 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYK-SRQSSLKIKYHELILELWRIA----PQLLLAVIPQLEFELLSEQEEVRLKAVKL 282 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 444444444333322222 222111 112223333334444443332 23456788999888888889999999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHH
Q 001945 443 LAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRA 522 (992)
Q Consensus 443 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 522 (992)
++.++......+..-.+.++...+..+.+....+|..++++...+....+.... ...++-.++... -|+..+.|.
T Consensus 283 vg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~--~~~~~~~l~~~~---~D~~~rir~ 357 (1266)
T KOG1525|consen 283 VGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK--ASTILLALRERD---LDEDVRVRT 357 (1266)
T ss_pred HHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh--HHHHHHHHHhhc---CChhhhhee
Confidence 999998766555566778888888889999999999999988766554221110 111111222111 222223222
Q ss_pred HHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 523 RATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 523 ~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
. ..+.... +.. .--.+.+.++..+.+.+.+..+.+|..|+.-+..+-+
T Consensus 358 ~--v~i~~~~--v~~-~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 358 Q--VVIVACD--VMK-FKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred e--EEEEEee--hhH-hhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1 1111111 101 1112333477777777778889999999888777765
No 199
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.23 E-value=0.082 Score=44.58 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=73.4
Q ss_pred HHHHhHHHHHHHHHhhcCC----CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHH
Q 001945 371 WMKEKLESVLHIVLGALRD----PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (992)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l 446 (992)
.+.+++-.++..+-..+.| ....-|..++.+++.+.+..++.+....++++..|...+..+ .++..++.++..|
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 4555665666666666665 566788899999999999666666666666666666666655 8999999999999
Q ss_pred HHhhc-cccccchHHHHHHHHHHhc
Q 001945 447 CEDMG-EEILPFLDPLMGKLLAALE 470 (992)
Q Consensus 447 ~~~~~-~~~~~~~~~l~~~l~~~l~ 470 (992)
++..+ +++.|+++.++-.+.+.+.
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 99985 4577888888877776543
No 200
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.15 E-value=0.094 Score=43.80 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHHHhhcCCCC--h--hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 001945 370 EWMKEKLESVLHIVLGALRDPE--Q--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~--~--~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
+.+.+++-.++..+-..+.|.+ . .-|..++.+++.+.+..++.+....++++..|...+.. +..|..|+.++..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHH
Confidence 3456666677777777777765 2 34889999999999987777777777777777777765 4699999999999
Q ss_pred HHHhhc-cccccchHHHHHHHHHHh
Q 001945 446 FCEDMG-EEILPFLDPLMGKLLAAL 469 (992)
Q Consensus 446 l~~~~~-~~~~~~~~~l~~~l~~~l 469 (992)
++...+ +++.|.++.++..+.+.+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999885 446666666666665543
No 201
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.09 E-value=1.2 Score=50.37 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=77.4
Q ss_pred Ccc-hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH--HHHHHHhcCCCCChHHHHHHHHHHHHhhcccC
Q 001945 116 WPD-LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM--QALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (992)
Q Consensus 116 ~~~-ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i--~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (992)
|.+ -+|..++++.+.++.++..|...+..++-..... ...+.++ ++.+...+.+ +..+|+..|+.+|.+++....
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~i-k~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKI-KSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHH-HHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccC
Confidence 533 3677788888888888888887777776433221 1223333 5667788888 999999999999999986554
Q ss_pred C--hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001945 193 D--GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (992)
Q Consensus 193 ~--~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (992)
. +.......+=+|.++..+.+ ..|.+++..+...|+.+-..
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSN 350 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccch
Confidence 3 22122223446777776654 36777888777777777654
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.29 Score=56.32 Aligned_cols=223 Identities=17% Similarity=0.209 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHH-HHHHHHH
Q 001945 176 VRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKS-IVHFSLE 254 (992)
Q Consensus 176 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-li~~~~~ 254 (992)
=|..|+..|+.+....+=.....--..++|-++. ++++.-.+.+....=++..+....+..-...+.+ ...+.++
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK----LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK----LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHH----HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE
Confidence 3677888888877654311111112345566665 4455656666555556666665554332222222 1111222
Q ss_pred HhhC-CCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchh
Q 001945 255 VSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (992)
Q Consensus 255 ~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (992)
+... +.++++.|-.+.=+|..++...+..-.. -+-.+++..++..|.+. .++-.|.-..-||+.+=+.+...
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~------~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDD------PEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCC------ccHHHHHHHHHHHHHHhhhcchh
Confidence 2222 4456677766655666777654322111 02234555666665442 14567888899999988877633
Q ss_pred ch----HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcC----HHH-------HH-----HhHHHHHH----HHHhhcCC
Q 001945 334 VF----PPVFEFASVSCQNASPKYREAAVTAIGIISEGC----AEW-------MK-----EKLESVLH----IVLGALRD 389 (992)
Q Consensus 334 ~~----~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~----~~~-------~~-----~~l~~i~~----~l~~~l~d 389 (992)
-| ....+.+...+.++-+.+|.||++|||.+..+. .+. +. ...+.+++ .++..++|
T Consensus 635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd 714 (1387)
T KOG1517|consen 635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD 714 (1387)
T ss_pred hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc
Confidence 22 345566667788899999999999999998763 111 10 11333343 67777889
Q ss_pred CChhHHHHHHHHHHHhHhhh
Q 001945 390 PEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~ 409 (992)
.++.||....-++..+....
T Consensus 715 gsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 715 GSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred cchHHHHHHHHHHHHHHHhh
Confidence 99999999888888776654
No 203
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.13 Score=52.92 Aligned_cols=131 Identities=21% Similarity=0.284 Sum_probs=109.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh-ccccccch
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFL 458 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~ 458 (992)
+..++..+.+.+..||..|..-+..+....+.....++..+++.+.....|.+..||.....++..++... +..+.|++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 55667778899999999999999999888655556677889999999999999999999999999977655 44578999
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Q 001945 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (992)
Q Consensus 459 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (992)
.-++..+...+.+..+.+|..++..+..++..++..+..+...+++.....+
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777666655555554444
No 204
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.69 Score=44.76 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Q 001945 503 LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIA 574 (992)
Q Consensus 503 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~ 574 (992)
+|.+.+.|.... +.-.+|..|.++++.++ . +..++.+.+.++++.+-+|+++..++...-
T Consensus 220 i~~L~k~L~d~~-E~pMVRhEaAeALGaIa----~-------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 220 IPSLIKVLLDET-EHPMVRHEAAEALGAIA----D-------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHhhh-cchHHHHHHHHHHHhhc----C-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 566666665432 33456777888888776 3 256677777788888888988877776543
No 205
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.96 E-value=0.27 Score=51.67 Aligned_cols=195 Identities=14% Similarity=0.207 Sum_probs=109.1
Q ss_pred CcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccC------CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHH
Q 001945 35 QVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK------LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA 107 (992)
Q Consensus 35 ~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~------~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~ 107 (992)
.+...++.++.+- .++.+.++...++...+...-.. +........-..+++.+.+ ++..+...++.+++.++
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 4566666777665 78889999999988877543211 1110011144566775554 79999999999999999
Q ss_pred cccCCCCCCc---chHHHHHHhhcC----CCHHHHHHHHHHHHHhhhhh--hhcccccHHHHHHHHHHhc------CCCC
Q 001945 108 KYAVPAGEWP---DLLPFLFQFSQS----EQEEHREVALILFSSLTETI--GQTFRPHFADMQALLLKCL------QDET 172 (992)
Q Consensus 108 ~~~~~~~~~~---~ll~~l~~~l~~----~~~~~~~~al~~l~~l~~~~--~~~~~~~~~~i~~~l~~~l------~~~~ 172 (992)
...... .-. +.++.+++++++ ++...+..++.++..+...- ...+.. ...++.+...+ .+..
T Consensus 134 ~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 134 SQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp TSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------
T ss_pred HcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCCC
Confidence 875432 223 677888877765 33445688899999887432 222222 44555555666 3335
Q ss_pred ChHHHHHHHHHHHHhhcccCChhhHHHH--HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 173 SNRVRIAALKAIGSFLEFTNDGAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
..++...++-|+..+. +.++ ....+ ..++|.+++.+... ..+++..-++.++.++++..+.
T Consensus 211 ~~Ql~Y~~ll~lWlLS-F~~~--~~~~~~~~~~i~~L~~i~~~~---~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLS-FEPE--IAEELNKKYLIPLLADILKDS---IKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHHHHHHHHHHT-TSHH--HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred chhHHHHHHHHHHHHh-cCHH--HHHHHhccchHHHHHHHHHhc---ccchHHHHHHHHHHHHHhccHH
Confidence 6677777777764433 2211 11112 23566666666543 4678888899999999988775
No 206
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.95 E-value=2.5 Score=43.96 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc-----cCChHHHHHHHHHHHHHHH
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-----DESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-----~~~~~v~~~a~~~l~~l~~ 448 (992)
++++..+..++.+.+.....++.-++|.+++.-...+.-.-.++++.++..+. |.+.+++.+++++|.+++-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 45888999999988889999999999999987432222122566677776664 3456788899999999864
No 207
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.94 E-value=0.55 Score=48.10 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=116.6
Q ss_pred hcCCChhhHHHHHHHHHHHhh--cCHHHHHHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHH
Q 001945 346 CQNASPKYREAAVTAIGIISE--GCAEWMKEKLESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPE-IVSHYESVL 421 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~--~~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll 421 (992)
-...+|..-.+++.-+..... .......++-..+...+.+||+-. -.-|...|..+...+.+.++++ +.+.+.-..
T Consensus 20 e~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~ 99 (307)
T PF04118_consen 20 ESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYS 99 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHH
Confidence 345678877777776666665 222222233345667788888743 3458899999999999988764 445566677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHH
Q 001945 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER 501 (992)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 501 (992)
+.++..+...+-.||-.....+....-..+..+.|.+..++..++..+.+...+....++..+..+...+++. -|+..
T Consensus 100 ~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~--~F~~~ 177 (307)
T PF04118_consen 100 PGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK--YFWQC 177 (307)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--HHHHH
Confidence 8888888888888998888888888777777888999999999999999888999999999999998887765 24444
Q ss_pred HH
Q 001945 502 VL 503 (992)
Q Consensus 502 ~~ 503 (992)
++
T Consensus 178 lw 179 (307)
T PF04118_consen 178 LW 179 (307)
T ss_pred HH
Confidence 43
No 208
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.78 E-value=0.074 Score=44.39 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=71.5
Q ss_pred HHhhhhhHHHHHHHhcccCC--h--HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 413 IVSHYESVLPCILNALEDES--D--EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~--~--~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
+.+++-.++..+-+.+.|.. . .-|.++..++..+++..++.+..+.++++..|...+. .++++..+++||..++
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 34566667777777777765 2 3488899999999998888888888888888888876 4579999999999999
Q ss_pred HHhh-ccCcccHHHHHHHHHH
Q 001945 489 AAAE-QAFIPYAERVLELLKI 508 (992)
Q Consensus 489 ~~~~-~~~~~~~~~~~~~l~~ 508 (992)
...+ +++.+.+++++-.+.+
T Consensus 83 ~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 83 KTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 8876 4555555555554444
No 209
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=4.7 Score=45.58 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=119.1
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcc-----------------cCCCHHHHHHHHHHHHHHHhhcC------
Q 001945 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW-----------------AKLSPQLKQLVKQSLIESITLEH------ 91 (992)
Q Consensus 35 ~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~-----------------~~~~~~~~~~i~~~ll~~l~~~~------ 91 (992)
|.++.|+.-..+++-++-|+-|+..||-.-+++- ...++|....+...++..+.++.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 4577777766666777778888877766533221 11234444444444444443332
Q ss_pred CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccccc---HHHHHHHHHHhc
Q 001945 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH---FADMQALLLKCL 168 (992)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~---~~~i~~~l~~~l 168 (992)
++........-++.+.. .-++.+..+++.+...+-.+|..+.+.+..+....|..+... .|.-+.-+...|
T Consensus 102 ds~qsdd~g~~iae~fi------k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFI------KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred cchhhhHHHHHHHHHHH------cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 11112222222222221 235678888888888888899999999999998887654332 234456677788
Q ss_pred CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
.| ....+|..|+-.|..+..-.+.......|.+.+..++.++..--+.+..-+...|+..+..+.+.+
T Consensus 176 ~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 176 RD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 88 888899999999999988775433344455555555554432111111236678888888888765
No 210
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.75 E-value=0.49 Score=49.47 Aligned_cols=146 Identities=11% Similarity=0.147 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhc--hhhccCChHHHHHHHHhccCCCCchhhHH-HHHHHHHHHHHcccCccCchhhhhHHHHhhccCC
Q 001945 523 RATELLGLVAESVG--RARMEPILPPFVEAAISGFGLEFSELREY-THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (992)
Q Consensus 523 ~~~~~l~~l~~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~r~~-~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~ 599 (992)
..+..+........ .......++++++.++...++..|+.|+. ++.+++.++..++..+.++++.++..++...-.
T Consensus 46 eIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~- 124 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLP- 124 (319)
T ss_dssp HHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-
Confidence 34444444443332 11233456677777777666667778864 788999999999999999999999888764310
Q ss_pred CCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccc----hHHHHHHHHH
Q 001945 600 DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FLEESLKILV 675 (992)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~~~~~~~l~ 675 (992)
.+.++. +...+.|..-...|..+..++...+.. .+..++..+.
T Consensus 125 -----MI~~d~----------------------------~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 125 -----MINKDF----------------------------EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp -----HHSSTS----------------------------SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred -----HHHhhh----------------------------hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 010000 011235666777777777776544332 3667777888
Q ss_pred hcccCCChhHHHHHHHHHHHHHHHHHH
Q 001945 676 RHASYFHEDVRYQAVFALKNILTAAHA 702 (992)
Q Consensus 676 ~~~~~~~~~vr~~a~~~l~~l~~~~~~ 702 (992)
..+.+.+.+|...++.++..++..+..
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999888764
No 211
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.74 E-value=0.11 Score=42.05 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=61.5
Q ss_pred HHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcch
Q 001945 826 FDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESA 901 (992)
Q Consensus 826 ~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 901 (992)
+...+..+.++..+ +|..|+..|..+++... ......+.++..++..+.++|+-|=-+|+.+++.++...++.+
T Consensus 5 ~~~al~~L~dp~~P-vRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPP-VRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcc-hHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 34456667777765 79999999999998765 3345689999999999999999999999999999998877643
No 212
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.74 E-value=0.22 Score=55.10 Aligned_cols=188 Identities=14% Similarity=0.199 Sum_probs=133.2
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc
Q 001945 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (992)
|-..+++.++++....|. ..|.....-+......+. +.+-..++|.+...+.+.+...|+-.+.++..++.-
T Consensus 327 yq~~i~p~l~kLF~~~Dr-------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDR-------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcch-------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 444567777777665543 566667777777777777 445567888888889999999999999999988876
Q ss_pred CHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 368 CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 368 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
.... ..-.+++..+-..-.|++..+|.....|+|.++.++.+..... .+...+.+.+.|+-..-|.++..++....
T Consensus 400 L~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~--vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 400 LSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR--VLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcc--ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 5433 1123566766666669999999999999999998876654322 23445556788887777777777776655
Q ss_pred HhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 448 EDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 448 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
+.++ .......|++.+.....+++..+|..+..++.....
T Consensus 476 ~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 4433 234556677777777788888888888877664443
No 213
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=7.8 Score=47.73 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=73.4
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChH
Q 001945 802 AVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAM 881 (992)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 881 (992)
.+.-|++....+.+++ |..+...+++...++.. ..|..|++.+..++...|+...+.+++.+|.+.+.+.|.+.+
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~-~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSR-KARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHH
Confidence 3444555555554544 34444444555555444 579999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCcchhhH
Q 001945 882 NRRNAAFCVGELCKNGGESALKY 904 (992)
Q Consensus 882 vr~~a~~~l~~l~~~~~~~~~~~ 904 (992)
|...+..-+.++=...|+.++.|
T Consensus 1598 Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1598 VECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHHhchhhhhc
Confidence 98888887777777777766554
No 214
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.67 E-value=1 Score=44.14 Aligned_cols=160 Identities=13% Similarity=0.220 Sum_probs=91.8
Q ss_pred cchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHh-hCChHHHHHHHH
Q 001945 664 APFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMT-EDDDKDVVAQAC 742 (992)
Q Consensus 664 ~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 742 (992)
.-|+++++..+ ++..++..|.+|.++|-. ..-+.++++-++..+-+.+. .-.+.+....++
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~---------------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~ 257 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN---------------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVV 257 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc---------------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44677777666 345667788888776521 11122233333333322221 113455566666
Q ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHH
Q 001945 743 TSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIF 822 (992)
Q Consensus 743 ~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 822 (992)
+....+++.-. -...|++.+++|.++.++-.+.- ....+ +.+...+++.++++++.+++.++..+...-
T Consensus 258 ~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakkl---g~~p~-------dhe~~alRd~AA~ll~yV~~~F~~~YktLk 326 (450)
T COG5095 258 MMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKL---GNVPD-------DHEHYALRDVAADLLKYVFSNFSSSYKTLK 326 (450)
T ss_pred HHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHh---cCCCc-------chhHHHHHHHHHHHHHHHHhhhhHhhhhhc
Confidence 66666655311 23489999999999988755321 00011 123346788888999999988888666655
Q ss_pred HHHHHHHHHh-hcCCCCccchhhHHHHHHHH
Q 001945 823 AKLFDPLMKF-AKSSRPLQDRTMVVATLAEV 852 (992)
Q Consensus 823 ~~l~~~l~~~-l~~~~~~~~r~~al~~l~~~ 852 (992)
+++...+++. +....+......|+.+++-+
T Consensus 327 PRvtrTllKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 327 PRVTRTLLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred hHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence 6677776664 44333334455666666543
No 215
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.64 E-value=1.3 Score=48.34 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=125.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhh
Q 001945 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK 285 (992)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 285 (992)
.++..+...+.++|+..|......+..+....+....-....+...+........ ...--...+++++++.......++
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETE-RHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS---STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcc-cccCHHHHHHHHHHHHhccCCCCc
Confidence 3455555667778888888777777777665544433344444444444443332 222234556777776653221111
Q ss_pred hcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHh
Q 001945 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (992)
Q Consensus 286 ~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (992)
. .+..-+..+++++.....- ......-..|+..+...-+. ....++..+...---.+.......+.-+..+.
T Consensus 212 ~-eh~~fl~~vllPLh~~~~~------~~y~~~L~~~~~~f~~kdp~-l~~~~i~~llk~WP~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 212 E-EHKQFLRKVLLPLHKSPHL------SSYHQQLSYCVVQFLEKDPS-LAEPVIKGLLKHWPKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp H-HHHHHHHHTTGGGGGSTGG------GGTHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 1 0112233445555443211 02233444555555543332 33334444433322234444456667788888
Q ss_pred hcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccc-----CChHHHHHH
Q 001945 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED-----ESDEVKEKS 439 (992)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~-----~~~~v~~~a 439 (992)
+.++ ..+......++..+..+++++|..|-..|+.....= .+-.-+.++...++|.+...+.. -+..||..+
T Consensus 284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8764 556667788999999999999999998887655321 11111233445566666666543 257899999
Q ss_pred HHHHHHHHHh
Q 001945 440 YYALAAFCED 449 (992)
Q Consensus 440 ~~~l~~l~~~ 449 (992)
..++..+.+.
T Consensus 362 ~~vl~~l~~~ 371 (409)
T PF01603_consen 362 QNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 216
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.56 E-value=0.27 Score=54.40 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHH
Q 001945 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (992)
Q Consensus 246 ~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~ 325 (992)
..+++++++.++.. |..+|...+..+...+...+.. .+-.+|++.+...+.+.++ ..|.....++..
T Consensus 329 ~~i~p~l~kLF~~~--Dr~iR~~LL~~i~~~i~~Lt~~----~~~d~I~phv~~G~~DTn~-------~Lre~Tlksm~~ 395 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSP--DRQIRLLLLQYIEKYIDHLTKQ----ILNDQIFPHVALGFLDTNA-------TLREQTLKSMAV 395 (690)
T ss_pred cchhhhHHHHhcCc--chHHHHHHHHhHHHHhhhcCHH----hhcchhHHHHHhhcccCCH-------HHHHHHHHHHHH
Confidence 34666677777666 7778887776666665543322 2334577777776666654 788888999999
Q ss_pred HHHHcchhch-HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHH-HHHHHhhcCCCChhHHHHHHHHHH
Q 001945 326 MALNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESV-LHIVLGALRDPEQFVRGAASFALG 403 (992)
Q Consensus 326 l~~~~~~~~~-~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i-~~~l~~~l~d~~~~vr~~a~~~l~ 403 (992)
++..+++..+ ..++..+.....+++...|--...++|.++........ ..+ .......+.|+-..-|.++.+.+.
T Consensus 396 La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 396 LAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred HHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 9999985544 56777777666677788888888888888887533221 122 234444688999999999999998
Q ss_pred HhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc
Q 001945 404 QFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 404 ~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
.-.+.+.. .+.-.+++|.+.-..-|+++.||..|..++..+.....+
T Consensus 473 at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 473 ATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hcccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 88887642 455577899999999999999999999999998876643
No 217
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.53 E-value=4.6 Score=43.90 Aligned_cols=169 Identities=17% Similarity=0.148 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--C--C-cHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCH
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--P--Q-VVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSP 73 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~--p--~-~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~ 73 (992)
++.+.++|+.+-|+|..+|+..-+.|.-+-.. + + ....|+.-+.+ +..+.||.-|...|.+. +.+..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~-----Qe~~~ 164 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY-----QEMEL 164 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-----HhccC
Confidence 35678899999999999999999999877653 2 2 34455555543 45788999998888665 34444
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCC-HHHHHHHHHHHHHhhhhhhhc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQT 152 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~al~~l~~l~~~~~~~ 152 (992)
...+.+++.+...+.+|++..||+.+..-|. .-+.-.|.+++-..+-+ .+.|...-.+|..+-......
T Consensus 165 neen~~~n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls 234 (885)
T COG5218 165 NEENRIVNLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS 234 (885)
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc
Confidence 5566778888888888999999987644332 11234456666555433 233444445555543322222
Q ss_pred ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc
Q 001945 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 153 ~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (992)
..++ ++ ++..++.+ .+..|+.++..++.+-+..
T Consensus 235 i~kr---i~-l~ewgl~d-Re~sv~~a~~d~ia~~w~~ 267 (885)
T COG5218 235 IDKR---IL-LMEWGLLD-REFSVKGALVDAIASAWRI 267 (885)
T ss_pred ccce---eh-hhhhcchh-hhhhHHHHHHHHHHHHhcc
Confidence 2222 22 67788888 8999999999988764443
No 218
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.34 Score=50.09 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=103.4
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~ 423 (992)
.+++-+.++|..|+..+......-+..+..+...+++.+.....|.+..||.....++..+.....++ +.+++.-+++.
T Consensus 66 qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~y 145 (393)
T KOG2149|consen 66 QLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPY 145 (393)
T ss_pred hhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHH
Confidence 36778899999999999998888788888888899999999999999999999999998866554443 45677888999
Q ss_pred HHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHh
Q 001945 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (992)
Q Consensus 424 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 469 (992)
+...+..-.+.+|..+...+..++..+++.+..+...+++.+...+
T Consensus 146 i~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 146 ISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776665555555554443
No 219
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.26 E-value=0.084 Score=48.06 Aligned_cols=96 Identities=22% Similarity=0.243 Sum_probs=74.2
Q ss_pred HHhHHHHHHHHHhhcC------------------CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChH
Q 001945 373 KEKLESVLHIVLGALR------------------DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (992)
Q Consensus 373 ~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 434 (992)
.++++.++|.+..... |.--.+|.+|+.++..+.+.+...+ .+..++..+..++.| ...
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHH
Confidence 3567788888876542 3457899999999999988764432 245678899999999 789
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC
Q 001945 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (992)
Q Consensus 435 v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (992)
++.-++..+..++...+..+.+.++.+.+.+...+..
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998888888888888888777753
No 220
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.19 E-value=8.2 Score=44.70 Aligned_cols=51 Identities=6% Similarity=-0.097 Sum_probs=36.2
Q ss_pred HHHHHHHhccCC-CCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001945 546 PFVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (992)
Q Consensus 546 ~i~~~l~~~l~~-~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~ 596 (992)
.+...+++|++. .+++++.-++.-+...+..-...+.+-++++...|.+..
T Consensus 649 ~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~ 700 (1697)
T KOG3687|consen 649 LLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSML 700 (1697)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHH
Confidence 466777888874 478888877777766666655667777777777777655
No 221
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.8 Score=49.09 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=92.2
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcH
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
.++..+++. ..++.+-.+|.+|..++|.++-.-+ ..++..++.|. +-++.||.....+||-.|..-+.
T Consensus 551 ~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 551 GVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred hhHhhhhee---ecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 344444443 3567788899999999998775432 33444555555 46899999999999998877654
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCH
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 474 (992)
.. .+..|-..+.|++.-||..|+.+++-+.-.+.+++.|-...+.+.+.+.+.+.+.
T Consensus 620 ~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 KV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 22 3333444556888899999999999999999889999999999988888776544
No 222
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.95 E-value=0.18 Score=40.88 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc
Q 001945 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453 (992)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 453 (992)
.+...+..+.|+.+.||..++..|.++.+.-. ......+.++..++..+.|+++-|--.|..++..++...++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 45667778899999999999999999998865 223456789999999999999999999999999999887753
No 223
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=13 Score=45.84 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 001945 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (992)
Q Consensus 474 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (992)
..+-..+..++++.+.+.++++.|+. .+.+...-+.....|-.|+..+..+....|. .+.+.+++.++.+.+
T Consensus 1518 ~~v~~~li~~i~~~~~a~~~d~~pl~-------~k~l~~trss~~~~r~~ai~~~~~l~~~lge-~~~~lL~q~iPfLaE 1589 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVADKDDLKPLN-------QKILKKTRSSSRKARYLAIIQVKLLYTKLGE-NVIVLLPQSIPFLAE 1589 (1621)
T ss_pred hHHHHHHHHHHHhhccCChhhhHHHH-------HHHHHHhccccHHHHHHHHHHHHHHHHHhcc-hhHHhhhhhhHHHHH
Confidence 34556667777777766666654444 4444443344445566788888888877865 677888999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcccCccCch
Q 001945 554 GFGLEFSELREYTHGFFSNIAGVLEDGFAQYL 585 (992)
Q Consensus 554 ~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l 585 (992)
.+.+++.++...+...+..+-..+|+.+..|+
T Consensus 1590 L~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1590 LMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 88888888888888888888888888776653
No 224
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.91 E-value=1.6 Score=48.82 Aligned_cols=144 Identities=13% Similarity=0.250 Sum_probs=91.2
Q ss_pred HHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 001945 106 IAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG 185 (992)
Q Consensus 106 i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~ 185 (992)
|....-++.....++|.|...+++.+..+++.++..+..+.+.++-.+ .-..|+|.+.+....+.+..|+..++.|+.
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~ 454 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLA 454 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHH
Confidence 343333333456678888888888888899999999999888777322 224567777766554488899999999999
Q ss_pred HhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCC
Q 001945 186 SFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSH 259 (992)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~ 259 (992)
.++...+. ...++.++..+ +..+..++.+...++.+...++-..+.-..-...++++.++.+.-.+
T Consensus 455 ~l~q~lD~-------~~v~d~~lpi~-~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 455 GLIQRLDK-------AAVLDELLPIL-KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHH-------HHhHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 98866531 12233333333 34556788888888777777655443312223344555555444333
No 225
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.87 E-value=7.3 Score=42.48 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCC----cHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhcccCCC--HHH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKDPQ----VVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLS--PQL 75 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~----~~~~l~~il~--~~~~~~~r~~a~~~l~~~i~~~~~~~~--~~~ 75 (992)
...++++..+....--|+.. ..|.++....+ |...+-.++. +++...-|.+ .++++.+.-.-...+ .+.
T Consensus 12 s~~~if~k~Q~s~aGhrk~~-a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil--~fl~~f~~Y~~~~dpeg~~~ 88 (885)
T COG5218 12 SMQLIFNKIQQSSAGHRKSL-AELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRIL--SFLKRFFEYDMPDDPEGEEL 88 (885)
T ss_pred HHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHH--HHHHHHHHhcCCCChhhhHH
Confidence 34555555554444445443 34444443333 3333334442 2222222322 234444432222222 234
Q ss_pred HHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCC--CCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc
Q 001945 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (992)
Q Consensus 76 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~ 153 (992)
...+..+++.++.+ ++..||...+++++.+.....+ +.-++.++..+.+-+-+.++.+|..|+.+|..+-+.-+
T Consensus 89 V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~--- 164 (885)
T COG5218 89 VAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL--- 164 (885)
T ss_pred HHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC---
Confidence 45555566677664 8999999999999998764332 23455666666666677788899999999988764333
Q ss_pred cccHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001945 154 RPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (992)
Q Consensus 154 ~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l 184 (992)
..-..+.+++...++++|+.+||..|+.-+
T Consensus 165 -neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 -NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred -ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 122456677788888779999999887644
No 226
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.86 E-value=1.6 Score=42.76 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=79.8
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC------hHHHHHHHHHHHHHHHhh
Q 001945 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES------DEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 378 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~------~~v~~~a~~~l~~l~~~~ 450 (992)
-.+..+.+.+- ..+...|.+|+.+|..= .-+++++|.++..+.+.- ..+-........+++++.
T Consensus 197 ~YF~kvisal~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 197 MYFDKVISALLDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 33444444444 45677888888776421 123445555555554431 122233333444444444
Q ss_pred ccccccchHHHHHHHHHHhcC-----CC-----HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHh
Q 001945 451 GEEILPFLDPLMGKLLAALEN-----SP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS 520 (992)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~-----~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 520 (992)
.-.+.||+.++++.++.++-. .+ -.+|.-|...++.+...+++......+.+...+.+.+-..+......
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~ 347 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQ 347 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchh
Confidence 445679999999998888632 12 22788888888888877776555555555554444433221111111
Q ss_pred HHHHHHHHHHHHH
Q 001945 521 RARATELLGLVAE 533 (992)
Q Consensus 521 ~~~~~~~l~~l~~ 533 (992)
- -|+.+++.+..
T Consensus 348 Y-Galkgls~l~k 359 (450)
T COG5095 348 Y-GALKGLSILSK 359 (450)
T ss_pred h-hhhhhhhhhch
Confidence 1 25666666553
No 227
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.83 E-value=6.1 Score=41.41 Aligned_cols=140 Identities=11% Similarity=0.195 Sum_probs=93.5
Q ss_pred HHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCC--CccchhhHHHHHHHHHhhcCCchh----hcHhhhHHHH
Q 001945 798 VIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR--PLQDRTMVVATLAEVARDMGSPIA----AYVDRVMPLV 871 (992)
Q Consensus 798 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~~r~~al~~l~~~~~~~~~~~~----~~~~~~~~~l 871 (992)
.++...+.++..+.....+.+..+++.++...+.+++++. .+..|..-+..+..+++++..... +.+..++..+
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444445566677777777778876533 246788888999999988755432 2467788888
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHhhcCc---c-----hhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHH
Q 001945 872 LKELASPDAMNRRNAAFCVGELCKNGGE---S-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (992)
Q Consensus 872 l~~l~~~~~~vr~~a~~~l~~l~~~~~~---~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~ 938 (992)
.-++++.+.++...++.++..++..... . +..|+..+++-+..++.++..... -..-+..+.+++.
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~g-f~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSG-FKLQSQILSNLFR 244 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGG-HHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHH-HHHHHHHHHHHHH
Confidence 8889999999999999999999875543 2 244666677766677766553333 3334566777664
No 228
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.65 E-value=7.4 Score=41.52 Aligned_cols=210 Identities=17% Similarity=0.151 Sum_probs=113.4
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhh----
Q 001945 291 IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE---- 366 (992)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~---- 366 (992)
..+++.+.+++.+...| ........++..-...++..+-+.++..+.+.+++.....|.+.+.+++....
T Consensus 21 ~~i~~~l~~~~~KE~nE------~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNE------AALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 34666666666543221 33344444444444444455667888999999999988899999999999875
Q ss_pred c-CHHHHHHhHHHHHHHHHhhcCCCChhHHH---HHHHHHHHhHhhhcHHHHh--hh---------hh--HHHHHHHhcc
Q 001945 367 G-CAEWMKEKLESVLHIVLGALRDPEQFVRG---AASFALGQFAEYLQPEIVS--HY---------ES--VLPCILNALE 429 (992)
Q Consensus 367 ~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~---~a~~~l~~l~~~~~~~~~~--~~---------~~--ll~~l~~~l~ 429 (992)
. ......+.++.++..+-+....+.+.... .++.++-.......+.+.. .. +. +-+.+...+.
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 2 22333444555555555555555444331 1111111111110011000 00 00 0012222211
Q ss_pred cCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHHHHhcCC--CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l 506 (992)
+ +.-....+.++..+........... ....-+.++.++.++ .+.+|..|+.++..+....+.. +...++..+
T Consensus 175 ~--~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l 249 (339)
T PF12074_consen 175 S--EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGL 249 (339)
T ss_pred C--HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHH
Confidence 1 2223335555555555554433322 356677777777777 8999999999999988876654 334455556
Q ss_pred HHHHh
Q 001945 507 KIFMV 511 (992)
Q Consensus 507 ~~~l~ 511 (992)
.+.+.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 66654
No 229
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.53 E-value=0.55 Score=48.20 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=97.7
Q ss_pred CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc----c--ccHHHHHHHHHHhcC--------CCCChHHHHH
Q 001945 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF----R--PHFADMQALLLKCLQ--------DETSNRVRIA 179 (992)
Q Consensus 114 ~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~----~--~~~~~i~~~l~~~l~--------~~~~~~vr~~ 179 (992)
..|+-++|.++.++.+.++..+..|+.++..+.+..+... . ...+.+.+.+..++. + .+..+-..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~-~s~~Ll~~ 193 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPED-ESLELLQA 193 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCch-hhHHHHHH
Confidence 5899999999999999999999999999999998776432 1 123445566677766 3 56667778
Q ss_pred HHHHHHHhhcccCC---hhhHHHHHhhHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Q 001945 180 ALKAIGSFLEFTND---GAEVVKFREFIPS-ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEV 255 (992)
Q Consensus 180 a~~~l~~l~~~~~~---~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~ 255 (992)
|..|+..++..... ......+...+-. ++..+....+...++.+...++.+..++...+...-.+++.++..+.++
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88888888664311 1111112222211 3332222211124677777778888888777777788888888888888
Q ss_pred hhCCC
Q 001945 256 SSSHN 260 (992)
Q Consensus 256 ~~~~~ 260 (992)
+.++.
T Consensus 274 l~npf 278 (282)
T PF10521_consen 274 LENPF 278 (282)
T ss_pred hcCCC
Confidence 87764
No 230
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.43 E-value=0.84 Score=41.74 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=69.7
Q ss_pred ccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhc
Q 001945 581 FAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660 (992)
Q Consensus 581 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~ 660 (992)
+.|+++.++|.++.....+++....+ .++.| ...+ +.-++.|++|++++..+...+.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V------~mGPF----------------Kh~v-DDGLelRK~ayE~lytlLd~~~ 59 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREV------DMGPF----------------KHKV-DDGLELRKAAYECLYTLLDTCL 59 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEE------EETTC----------------EEEE-EGGGHHHHHHHHHHHHHHHSTC
T ss_pred hHHHHHHHHHHHHHHhccCHHHheee------ecCCc----------------eeee-cCcHHHHHHHHHHHHHHHHHHH
Confidence 46889999999997665433210000 01111 1122 2345899999999999988776
Q ss_pred ccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHH
Q 001945 661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTM 729 (992)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 729 (992)
..+. +..++..+..-+.+ +.+||.-+...+.+++... |..+...++.+.+.+...+
T Consensus 60 ~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~----------p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 60 SRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA----------PEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp SSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-----------HHHHHHCCTTTHHHHHHHH
T ss_pred HhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHHHHh
Confidence 5553 56667777777777 8999999999988886643 3334444555555555554
No 231
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.17 Score=46.60 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=79.6
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH---hhc
Q 001945 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA---AEQ 493 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~---~~~ 493 (992)
+...+|.+..+|.+.+..-+--|-..+..++...++.+.|.+++++..|...+...+.++.+.++.++..+... +|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 45578888898887776677788888999998888899999999999999999999999999999998887765 457
Q ss_pred cCcccHHHHHHHHHHH
Q 001945 494 AFIPYAERVLELLKIF 509 (992)
Q Consensus 494 ~~~~~~~~~~~~l~~~ 509 (992)
.+.|||.+++|.+..+
T Consensus 192 aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhhHHHHhhhhhhhh
Confidence 8999999999977544
No 232
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.30 E-value=6.2 Score=39.22 Aligned_cols=199 Identities=19% Similarity=0.155 Sum_probs=113.0
Q ss_pred cCCCHHHHHHHHHHHHHHhCCC-CcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHh
Q 001945 13 LMPDNDARRQAEDQIKRLAKDP-QVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT 88 (992)
Q Consensus 13 ~s~d~~~r~~A~~~l~~~~~~p-~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~ 88 (992)
...+++.....-+.|.++..+. ...+..++++.. ......+..+..++.+........+ +..+..+....++...
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~ 89 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPS 89 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhccc
Confidence 4457777878888887776554 555555555542 3344445566555554443332222 2233333222222111
Q ss_pred --h--cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhh-cCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHH
Q 001945 89 --L--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFADMQAL 163 (992)
Q Consensus 89 --~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~ 163 (992)
. +.........+..+..+.... |+ .|+++++.+..++ ++.++..+..+++.+..+++.-.-.+ ...+..
T Consensus 90 ~~~~~~~~~~~~i~~a~s~~~ic~~~-p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~----~s~w~v 163 (234)
T PF12530_consen 90 SFSSKDEFWECLISIAASIRDICCSR-PD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF----YSAWKV 163 (234)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhC-hh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH----HHHHHH
Confidence 1 223444455566777777665 54 8999999999999 77788889999999999985433222 233444
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 001945 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (992)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 221 (992)
+.+-+..+..+.+-..-+..+ .++....- +...+..+...++..+.+.....+.+
T Consensus 164 l~~~l~~~~rp~v~~~l~~l~-~l~~~~~~--~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 164 LQKKLSLDYRPLVLKSLCSLF-ALVPQGAV--DSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHhcCCccchHHHHHHHHHH-HHhccccC--ChhhhhHHHHHHHHHHHhhccccccc
Confidence 555555546666655433332 23333221 23335566777888888776655533
No 233
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.11 E-value=12 Score=41.79 Aligned_cols=539 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccC----
Q 001945 1 MAQSLELLLIQF--LMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAK---- 70 (992)
Q Consensus 1 m~~~l~~ll~~~--~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~---- 70 (992)
|.+.+...+..+ ..+|..--++..-++..+.. .|+...--.+.+.. +.....|-.-.-..-+.+...-..
T Consensus 258 l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~ 337 (1128)
T COG5098 258 LKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMV 337 (1128)
T ss_pred hhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhH
Q ss_pred -CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc--ccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 001945 71 -LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (992)
Q Consensus 71 -~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~ 147 (992)
--++..+.+...+.+.|. |..+.+|..+.+.+..|.. .-++ +.-.++.......+++....+|..|..+++.+.-
T Consensus 338 e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~sk~~-~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 338 EHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNSKTV-GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred hhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCccccc-chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q ss_pred hhh------------------hcccccHHHHHHHHHHhcCCCCChHHH--------------------------------
Q 001945 148 TIG------------------QTFRPHFADMQALLLKCLQDETSNRVR-------------------------------- 177 (992)
Q Consensus 148 ~~~------------------~~~~~~~~~i~~~l~~~l~~~~~~~vr-------------------------------- 177 (992)
.-| .......+.+-+-.+..+.| +..+|-
T Consensus 416 ~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D-~E~Eveqd~~q~~t~le~~~n~~~es~ien~ve~ina~ 494 (1128)
T COG5098 416 RHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCD-GEKEVEQDEGQCRTELEGSFNKSAESRIENEVENINAT 494 (1128)
T ss_pred cCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccc-hHHhhhhhhhhhhhhhccccccchhhhhhhhhhccccc
Q ss_pred -HHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHh
Q 001945 178 -IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS 256 (992)
Q Consensus 178 -~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~ 256 (992)
...+--+.-...|. .+...|...+......+...+-..+......+++.+.---...-..-+..+..++..++.-.
T Consensus 495 ~t~~lmKl~l~~~yY---~da~qfidi~~~~~~~Is~LLf~knk~EV~EsmdF~vlc~~f~I~~S~~~ikkm~hLvW~kg 571 (1128)
T COG5098 495 NTSVLMKLKLMIVYY---EDANQFIDIMKEIQDNISTLLFGKNKTEVNESMDFIVLCFYFRIDGSREAIKKMFHLVWTKG 571 (1128)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcccchHHHHHHHHHhheecc
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-----
Q 001945 257 SSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----- 331 (992)
Q Consensus 257 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~----- 331 (992)
.+++ ...+....+++...+....|....-..+...+...++. -...+...-+..+-+.+|
T Consensus 572 t~de-g~si~~hvlscyk~lf~~~p~ns~~~e~a~~iarnlin--------------ls~~aslaeLssleqll~mm~~~ 636 (1128)
T COG5098 572 TDDE-GTSIELHVLSCYKLLFQMKPNNSSLFEFAKEIARNLIN--------------LSFEASLAELSSLEQLLGMMYAR 636 (1128)
T ss_pred cCCC-CcchhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhc--------------ccHHHHHHHHHhHHHHHHHHHHh
Q ss_pred ----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001945 332 ----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 332 ----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (992)
+.++..++....-.-.+-+-..+.+.+..+|.++-+-......-+..++..=+..-.+.+.....-.|.++.++..
T Consensus 637 ~yid~~vIs~Lw~~ys~Qk~d~s~~q~~gsii~iGml~l~d~~~~l~gl~~ll~iglg~~gl~dl~L~rY~cia~~Rv~~ 716 (1128)
T COG5098 637 RYIDKTVISELWSMYSLQKFDFSLLQASGSIIHIGMLLLVDMFHSLVGLSTLLLIGLGVEGLLDLMLSRYKCIAQIRVRQ 716 (1128)
T ss_pred hhhHHHHHHHHHHHHHhhccchhHHhhccceEEecchhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q ss_pred hhcHHH--------------------------------------------------------------------------
Q 001945 408 YLQPEI-------------------------------------------------------------------------- 413 (992)
Q Consensus 408 ~~~~~~-------------------------------------------------------------------------- 413 (992)
...-.-
T Consensus 717 ~~~~~~~In~~l~~~l~kkl~~~vv~~t~s~ey~~~~eqa~sai~~~~k~pD~l~t~li~~~t~~~fgkp~eeds~~~le 796 (1128)
T COG5098 717 RVKFDDEINEVLAKNLAKKLEHQVVDVTVSTEYSISTEQAKSAIMLLEKLPDMLRTSLIAISTVGCFGKPHEEDSMQYLE 796 (1128)
T ss_pred hccccHhhhHHHHHHHHHHHHHHhhcccccceeccchHHHHHHHHHHHhCchHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q ss_pred --------------------------------------------------------------------------------
Q 001945 414 -------------------------------------------------------------------------------- 413 (992)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (992)
T Consensus 797 ~~er~v~l~~l~f~Vg~vaIk~lVy~e~ceaefkrrki~ae~~~~v~n~~~~~nns~qd~ge~~~IggtsEddf~da~~f 876 (1128)
T COG5098 797 ELERLVKLNRLKFKVGKVAIKPLVYEERCEAEFKRRKISAELEENVDNDDSILNNSAQDRGESSRIGGTSEDDFVDAFFF 876 (1128)
T ss_pred HHHHHHhhhceeeEecceeehHHHHHHHHhhHHhhhhhHHHHHhhccCCCCcCccchhhcchhhhccCCCHHHHHHHHHH
Q ss_pred ----------HhhhhhHHHHHHHhccc----CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHH
Q 001945 414 ----------VSHYESVLPCILNALED----ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQET 479 (992)
Q Consensus 414 ----------~~~~~~ll~~l~~~l~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~ 479 (992)
...+...-|.+.....+ .++.++.+|.-+|..+.=-..+....+++-++..+.+. +++.+|.+
T Consensus 877 ikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~---p~P~IR~N 953 (1128)
T COG5098 877 IKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKH---PIPRIRAN 953 (1128)
T ss_pred HHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhC---CCcceecc
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC
Q 001945 480 CMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF 559 (992)
Q Consensus 480 a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 559 (992)
+.-.+|.+.-. |..+.++.-.+|...+ .|++..+|..++.++..+. -.|.-.+..++ ..+..++.+++
T Consensus 954 aVvglgD~~vc----fN~~~de~t~yLyrrL---~De~~~V~rtclmti~fLi-lagq~KVKGql----g~ma~~L~ded 1021 (1128)
T COG5098 954 AVVGLGDFLVC----FNTTADEHTHYLYRRL---GDEDADVRRTCLMTIHFLI-LAGQLKVKGQL----GKMALLLTDED 1021 (1128)
T ss_pred ceeecccccee----hhhhhHHHHHHHHHHh---cchhhHHHHHHHHHHHHHH-Hccceeeccch----hhhHhhccCCc
Q ss_pred chhhHHHHHHHHHHHH
Q 001945 560 SELREYTHGFFSNIAG 575 (992)
Q Consensus 560 ~~~r~~~~~~~~~i~~ 575 (992)
.++.+-+...+..++.
T Consensus 1022 a~Isdmar~fft~~a~ 1037 (1128)
T COG5098 1022 AEISDMARHFFTQIAK 1037 (1128)
T ss_pred chHHHHHHHHHHHHHh
No 234
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.08 E-value=2.4 Score=44.89 Aligned_cols=107 Identities=15% Similarity=0.342 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHh
Q 001945 735 KDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSM 814 (992)
Q Consensus 735 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 814 (992)
.......+..+..++..-. -.+.+|+..+++.++..+-.+.-+.... .+..|.+++-++++++.+++.+
T Consensus 231 l~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~----------~~~h~~LRd~AA~ll~~i~~~f 299 (343)
T cd08050 231 LALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPP----------DDNHWALRDYAARLLAQICRKF 299 (343)
T ss_pred HHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCC----------CchHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555544211 2357899999999998876654333210 3577899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhcCCC-CccchhhHHHHHHHH
Q 001945 815 GPHFAPIFAKLFDPLMKFAKSSR-PLQDRTMVVATLAEV 852 (992)
Q Consensus 815 ~~~~~~~~~~l~~~l~~~l~~~~-~~~~r~~al~~l~~~ 852 (992)
+......-+++...+.+.+.++. +......|+..|+.+
T Consensus 300 ~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 300 STSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99877777788888888776544 333467777777754
No 235
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.89 E-value=2.7 Score=45.41 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcC----CChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhc-
Q 001945 314 APDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQN----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL- 387 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~----~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l- 387 (992)
..|..|..+ +...-| ..++|-+..++.+...- .+-..-...+.....+..+..-.+.+++..++|.++.|+
T Consensus 222 ~~r~eAL~s---L~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvV 298 (576)
T KOG2549|consen 222 PLRQEALQS---LETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVV 298 (576)
T ss_pred HHHHHHHHh---hccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhh
Confidence 345555444 444444 44555555555443321 233333344444555555555567789999999999986
Q ss_pred ---------CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhc-cccc
Q 001945 388 ---------RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMG-EEIL 455 (992)
Q Consensus 388 ---------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~-~~~~ 455 (992)
.|.|+.+|.-|+..+..++..++.........++..+.+.+.|+. ......++..|..|-...- .-+.
T Consensus 299 sk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~il 378 (576)
T KOG2549|consen 299 SKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVIL 378 (576)
T ss_pred hhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheec
Confidence 367899999999999999999977655656788888888888874 4556677777777765432 2344
Q ss_pred cchHHHHHHHHHHhc
Q 001945 456 PFLDPLMGKLLAALE 470 (992)
Q Consensus 456 ~~~~~l~~~l~~~l~ 470 (992)
|.+......+...+.
T Consensus 379 p~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 379 PNLKEYNERLQSVLD 393 (576)
T ss_pred cchHHHHHHhhhhcc
Confidence 666666555555443
No 236
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.84 E-value=7.1 Score=38.17 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC-
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE- 431 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~- 431 (992)
.|+.|++.+..+... .-+..+...+.+++...|..+..++|++-.-. -+|.+.+.|.+.
T Consensus 172 ~Ry~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~ 231 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDET 231 (289)
T ss_pred HHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhh
Confidence 556666666554332 33556666777778888888888887765432 345555555543
Q ss_pred -ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 432 -SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 432 -~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
.+=||..|..+|+.+... ..++.|.+.+.+..+-+++.+..++...-.
T Consensus 232 E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred cchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 356777788888776532 234455555666667777777666665443
No 237
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.72 E-value=2.4 Score=44.59 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhc---ccccH----HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHH
Q 001945 129 SEQEEHREVALILFSSLTETIGQT---FRPHF----ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR 201 (992)
Q Consensus 129 ~~~~~~~~~al~~l~~l~~~~~~~---~~~~~----~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 201 (992)
+++.+.....+..+..++...+.. +.... ...+..+.+.+.. ++..++..|+..+..++.+.+...... ..
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLLSQGPKRSEKL-VK 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCccccch-HH
Confidence 456678888888888888765522 11111 1255666677787 899999999999999998876432221 14
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 001945 202 EFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (992)
Q Consensus 202 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 236 (992)
..++.+++.+...++.++.+....++.++..++..
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 56677777776655444455667888889988764
No 238
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.71 E-value=1.5 Score=39.37 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=77.9
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (992)
.+..+||..-...|..+..-..+ -...+..|.+.+.++++.|...|+..|..+.+.++..+...+ ..++.
T Consensus 12 ~l~~~dw~~il~icD~I~~~~~~--------~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 12 KLTSENWGLILDVCDKVKSDENG--------AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred cCCCcCHHHHHHHHHHHhcCCcc--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34567776544444444322111 235678888889999999999999999999999987665432 56777
Q ss_pred HHHHhccc-CChHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHH
Q 001945 423 CILNALED-ESDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKL 465 (992)
Q Consensus 423 ~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~l 465 (992)
.+...+.+ .++.|+..+...+......++..- .+++..+...|
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKL 128 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 77777777 578999999999999988876421 13344444443
No 239
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.69 E-value=11 Score=39.70 Aligned_cols=309 Identities=14% Similarity=0.137 Sum_probs=148.9
Q ss_pred CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccc-cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCC
Q 001945 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.|..++ ..+...++-..+.+..++..++......+.. ...-....+...++++.+.+.+..|.+||..++...+-
T Consensus 115 ~~~~fl----~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 115 EWLSFL----NLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred chHHHH----HHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence 465554 4455567777777888888887654433332 33444566777777656777888899999888765431
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH--HHHHHHHHHhhCCCCChHHHHHHHH
Q 001945 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVSSSHNLEPNTRHQAIQ 271 (992)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~li~~~~~~~~~~~~~~~~r~~a~~ 271 (992)
....- ..+-+..++..+. -+..+.......+-|++.+. ..|.. ...+. .+++.+.++.++. ..+.+-+.++.
T Consensus 191 R~~~v-~adg~~~l~~~l~--s~~~~~QlQYqsifciWlLt-Fn~~~-ae~~~~~~li~~L~~Ivk~~-~KEKV~Rivla 264 (442)
T KOG2759|consen 191 RYAFV-IADGVSLLIRILA--STKCGFQLQYQSIFCIWLLT-FNPHA-AEKLKRFDLIQDLSDIVKES-TKEKVTRIVLA 264 (442)
T ss_pred hheee-ecCcchhhHHHHh--ccCcchhHHHHHHHHHHHhh-cCHHH-HHHHhhccHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 10000 0000122222221 01122333333333433332 11111 11111 3555556665543 24555556666
Q ss_pred HHHHHHHhhHhHhhhcCChHHHH----HHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchh--chHHHHHHHHhh
Q 001945 272 IISWLAKYKYNSLKKHKLVIPIL----QVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH--VFPPVFEFASVS 345 (992)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il----~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~~ 345 (992)
.+..+....+....+.....+++ +..++.|.+..-+|+ + ..+.+..+.+.+.+. .+..+=++..+.
T Consensus 265 i~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE----D----L~~di~~L~e~L~~svq~LsSFDeY~sEl 336 (442)
T KOG2759|consen 265 IFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE----D----LVDDIEFLTEKLKNSVQDLSSFDEYKSEL 336 (442)
T ss_pred HHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH----H----HHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 66666655432211110111111 112233332211111 1 112222333333211 111111111111
Q ss_pred h---cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhhh--h
Q 001945 346 C---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHYE--S 419 (992)
Q Consensus 346 l---~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ 419 (992)
. -+.++..+....|. ++. ..+.++--.++..++..|.. .+|.+-..||.=+|.+.+..+.. ...+. +
T Consensus 337 ~sG~L~WSP~Hk~e~FW~-----eNa-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~g 409 (442)
T KOG2759|consen 337 RSGRLEWSPVHKSEKFWR-----ENA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYG 409 (442)
T ss_pred HhCCcCCCccccccchHH-----HhH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhc
Confidence 1 11111111111110 111 11222333678888888874 45888899999999999998542 22221 3
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 420 VLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 420 ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.-..+++.++.++++||-+|+.|+..++.
T Consensus 410 gKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 410 GKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 44678889999999999999999988764
No 240
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.51 E-value=3.9 Score=47.50 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHc--c-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhh-cCHHH-------HHHhHHHHHHHHHhhc
Q 001945 319 AAEVIDTMALNL--A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE-GCAEW-------MKEKLESVLHIVLGAL 387 (992)
Q Consensus 319 a~~~l~~l~~~~--~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~-~~~~~-------~~~~l~~i~~~l~~~l 387 (992)
+...+..+.... + ...+..+++++..-........|.+++.+++.++. .|... ....++.+...+-.+.
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 344444443332 2 44555555554332223456789999999999887 23211 1223344444444445
Q ss_pred CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Q 001945 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLA 467 (992)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 467 (992)
++.+...+..++++||++..... ... +.|.+. +-...+..+|..|+++|..+....+..+ .+.+++
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~---i~~---l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-------~~~l~~ 521 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSS---IKV---LEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-------QEVLLP 521 (574)
T ss_pred hcCCchheeeHHHhhhccCChhH---HHH---HHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-------HHHHHH
Confidence 55667778889999998765421 111 222222 2223457899999999999887766543 333444
Q ss_pred HhcC--CCHhHHHHHHHHHH
Q 001945 468 ALEN--SPRNLQETCMSAIG 485 (992)
Q Consensus 468 ~l~~--~~~~v~~~a~~~l~ 485 (992)
.+.+ .+.++|..|+..+-
T Consensus 522 i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 522 IYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHcCCCCChHHHHHHHHHHH
Confidence 4444 36788888876544
No 241
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=93.50 E-value=6.3 Score=44.65 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHHHhhc-CCHhHHHHHHHHHHHHHc----cc---CCCCCCcchHHHHH----HhhcCCCHHHHHHHHHHHHHhhhhh
Q 001945 82 SLIESITLE-HSAPVRRASANVVSIIAK----YA---VPAGEWPDLLPFLF----QFSQSEQEEHREVALILFSSLTETI 149 (992)
Q Consensus 82 ~ll~~l~~~-~~~~vr~~~~~~l~~i~~----~~---~~~~~~~~ll~~l~----~~l~~~~~~~~~~al~~l~~l~~~~ 149 (992)
.+-+.+... ....++++.|+++..+.. .. .....|.+.+..+. +++.. +.+...++-+...+....
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS 210 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVS 210 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcC
Confidence 444444444 466699999999998643 21 11136777666554 33333 355566776666655444
Q ss_pred -hhcccccHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHhh
Q 001945 150 -GQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFL 188 (992)
Q Consensus 150 -~~~~~~~~~-~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 188 (992)
++.|..++. .++..+...+++ . ..|..++.++..++
T Consensus 211 ~~e~F~~~W~~~~i~~~~~klKd-k--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 211 PKEFFLSNWLPSLIESLISKLKD-K--ETRPVALECLSRLL 248 (552)
T ss_pred cHHHHHHHHHHHHHHHHHhhcCC-h--hhhHHHHHHHHHHH
Confidence 355677777 577777777777 4 78888999988865
No 242
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=5.7 Score=49.05 Aligned_cols=258 Identities=12% Similarity=0.131 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
+.-+..+.+-|.. .++..|..|++.+..++.....+ ....++|.......+++.+++..+|......+..+....
T Consensus 40 dsel~~I~kkL~K-kD~~TK~KaL~eL~eli~~~~~e----~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 40 DSELDIIVKKLLK-RDETTKIKALQELSELIDTSDTE----ELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred CHHHHHHHHHHhc-cChHHHHHHHHhHHHhcccccch----HHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 3345556666666 78999999999999988776432 233467888888888888899999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH-hhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchH
Q 001945 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK-YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPD 316 (992)
Q Consensus 238 ~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~ 316 (992)
.+.+.+++..+++.++-...+ .+..+...|...+..... .+...... .+-+.+.+.+.+.+....+++..+ .+
T Consensus 115 kk~lsp~LK~li~~wl~~~~d--~~~~vs~aa~~sf~~~f~~ek~~~v~~-~c~~~i~~~~~~~~~~~~~~slSd---~~ 188 (1312)
T KOG0803|consen 115 KKKLSPFLKSLIPPWLGGQFD--LDYPVSEAAKASFKDGFAEEKDRHVWF-KCDPEIFYLVTEILVKETPDSLSD---LR 188 (1312)
T ss_pred HHHhhHHHHhhhhhhhheecc--cchHHHHHHHHHHHhhcChhhhHHHHH-HhhHHHHHHHHHHHhccCccccch---hh
Confidence 888888999988887643332 244555555544433221 11111110 123344455544443333221111 01
Q ss_pred HHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc--CHH---HHHHhHHHH--HHHHHhhcCC
Q 001945 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG--CAE---WMKEKLESV--LHIVLGALRD 389 (992)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~--~~~---~~~~~l~~i--~~~l~~~l~d 389 (992)
..+.+.++ ....++.-.++.++..+... ..+ ...+....+ -..+...+++
T Consensus 189 ~~s~Ee~E-----------------------~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~ 245 (1312)
T KOG0803|consen 189 TLSSEELE-----------------------SKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKS 245 (1312)
T ss_pred hcchHHHH-----------------------HhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcC
Confidence 11111110 00011111112222111110 000 011112222 3567788899
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
++|.++.+...++..++....+-..+ ....+.+.+.....+.+ .|......++.......
T Consensus 246 k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~ 306 (1312)
T KOG0803|consen 246 KSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSL 306 (1312)
T ss_pred CCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhh
Confidence 99999999999999999887554222 23334455555555544 44444444444333433
No 243
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=10 Score=38.32 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=158.0
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC--CChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHH
Q 001945 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD--PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLP 422 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~ 422 (992)
-.+++...-.-++.++..+..+.++.+... -+..++..|.+ ++..+-...+.++..-+....-.-+.+. -.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~---g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAE---AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccc---cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 445555566667777777777666554432 23334444432 3445666666666555443211111222 35677
Q ss_pred HHHHhcccCC-hHHHHHHHHHHHHHHHhhcc-----ccccchH-----HHHHHHHHHhcCC-CHhHHHHHHHHHHHHHHH
Q 001945 423 CILNALEDES-DEVKEKSYYALAAFCEDMGE-----EILPFLD-----PLMGKLLAALENS-PRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 423 ~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~-----~~~~~~~-----~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~ 490 (992)
.+...+.... .++-...++++..+.-.-.- ....|.. .++..|.+.++-. ++.+-..+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 7776666443 35667788888876532110 0011211 2344555555432 355666666677766543
Q ss_pred hhccCcccHHHH-----HHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccC------ChHHHHHHHHhccCCCC
Q 001945 491 AEQAFIPYAERV-----LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP------ILPPFVEAAISGFGLEF 559 (992)
Q Consensus 491 ~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~i~~~l~~~l~~~~ 559 (992)
-+ +...+ +..+..++...++.. .|..+-.|++.+-.-.|.+.... -.+.++..+.+.. ++
T Consensus 273 ~E-----~C~~I~e~GGl~tl~~~i~d~n~~~--~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~ 343 (461)
T KOG4199|consen 273 DE-----ICKSIAESGGLDTLLRCIDDSNEQG--NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DD 343 (461)
T ss_pred HH-----HHHHHHHccCHHHHHHHHhhhchhh--HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CC
Confidence 21 11111 334555665443333 33334444444443345444332 2345666655543 36
Q ss_pred chhhHHHHHHHHHHHHHcccCccCchhh-hhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeee
Q 001945 560 SELREYTHGFFSNIAGVLEDGFAQYLPL-VVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVR 638 (992)
Q Consensus 560 ~~~r~~~~~~~~~i~~~~~~~~~~~l~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (992)
|.+-+.++.++.-++-..++.-..+++. .-...++.+...
T Consensus 344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah--------------------------------------- 384 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH--------------------------------------- 384 (461)
T ss_pred hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC---------------------------------------
Confidence 7788888888888887666543333221 111122222111
Q ss_pred cchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 001945 639 TGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (992)
Q Consensus 639 ~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (992)
...-.+++.||+++-.++....+.-.+++..-++.++......+++.+.+|-.+|-.+
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 0112367889999999988877666677666666666665566777777666666444
No 244
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.15 E-value=2.1 Score=45.25 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=80.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC-------ChHHHHHHHHHHHHHHHhhcc
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-------SDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~-------~~~v~~~a~~~l~~l~~~~~~ 452 (992)
+..+...+.+.+...|..|+..|. .. ..+.+++|.++..+.+. +-..-......+..++.+-.-
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~---tD------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLR---TD------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhc---cC------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 344444444567777777765553 22 12334555555444332 233344455555556555555
Q ss_pred ccccchHHHHHHHHHHhcC----------CCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 001945 453 EILPFLDPLMGKLLAALEN----------SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 453 ~~~~~~~~l~~~l~~~l~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (992)
.+.+|+-.+++.++.++-. .++.+|..|...++.++..++.......+.++..+.+.+...
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 6789999999999988732 346899999999999999988776666677777777766543
No 245
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.08 E-value=11 Score=37.92 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCChh-HHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHHh
Q 001945 378 SVLHIVLGALRDPEQF-VRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 449 (992)
.++..+...++..++. .-..||.=++++.+..++ ....+ -+.-..++..++.++++|+-+|.+++..++..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 5677777777755554 445677888888888754 33222 24556788899999999999999999887653
No 246
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=93.05 E-value=25 Score=42.11 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhc----CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhh----hh
Q 001945 79 VKQSLIESITLE----HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET----IG 150 (992)
Q Consensus 79 i~~~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~----~~ 150 (992)
+.-.+.+.|.+. .++.+|.....++..+...... ..+.+++|-+..++-++++..|.-|-..+..+... ..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 444455555532 3566777777777777654322 13388899999999999999999999999988653 22
Q ss_pred hcccc-cHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHhhcccCChhhHHHHHh--hHHHHHHHHHHHhhcCCHHHHHHH
Q 001945 151 QTFRP-HFADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE--FIPSILNVSRQCLASGEEDVAVIA 226 (992)
Q Consensus 151 ~~~~~-~~~~i~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~~~~ 226 (992)
+.+.. ..+.+...+... +. ..++..-..-=..+..++...+...-...+.. +-| +...+...+.....+.....
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 33332 222333333333 22 12222212112333444444432221222222 234 55555555555534455566
Q ss_pred HHHHHHHhcCCc
Q 001945 227 FEIFDELIESPA 238 (992)
Q Consensus 227 ~~~l~~l~~~~~ 238 (992)
++++..+.+..+
T Consensus 235 L~~l~~lL~k~~ 246 (727)
T PF12726_consen 235 LRCLSILLEKLG 246 (727)
T ss_pred HHHHHHHHHhCH
Confidence 677777766543
No 247
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.93 E-value=2.8 Score=37.24 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=75.8
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (992)
.+.++||..-..-|..+..-..+ -...+..+.+.++++++.|...|+..|..+.+.++..+...+ ..++.
T Consensus 13 ~l~~~dw~~ileicD~In~~~~~--------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKEPEG--------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcCCcc--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 34567776655444444321111 125577888889999999999999999999999988765432 45666
Q ss_pred HHHHhccc------CChHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 001945 423 CILNALED------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (992)
Q Consensus 423 ~l~~~l~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l 465 (992)
.+++.+.. .+..|+..++..+......++. .|.+......|
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~--~p~~~~~Y~~L 131 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH--EPKIKEAYDML 131 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77777642 4578999999999998887763 24344444433
No 248
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=92.92 E-value=14 Score=40.79 Aligned_cols=197 Identities=13% Similarity=0.170 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHH-HHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh-HHHHHHHHHhhcCCCC
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPE 391 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~~ 391 (992)
..|-.+..+|+.+...++......++. .+...++++..-.|..|...+...+.......... .+.+.+.+...|.++.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 457789999999999998767766665 58888999999999999999988887643211110 2344455555555322
Q ss_pred -----------hhHHHHHHHHHHHhHhhhc--------------------H------HHHhhhhhHHHHHHHhcccCCh-
Q 001945 392 -----------QFVRGAASFALGQFAEYLQ--------------------P------EIVSHYESVLPCILNALEDESD- 433 (992)
Q Consensus 392 -----------~~vr~~a~~~l~~l~~~~~--------------------~------~~~~~~~~ll~~l~~~l~~~~~- 433 (992)
.++|..|-..+..+...-. + ..........+.+...+.....
T Consensus 182 ~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~ 261 (441)
T PF12054_consen 182 PPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKL 261 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 3566666666666554322 0 0111122233333333332210
Q ss_pred -------HHHHHHHHHHHHHH---------------Hhh--ccccccchHHHHHHHHHHhcC-CCHhHHHHHHHHHHHHH
Q 001945 434 -------EVKEKSYYALAAFC---------------EDM--GEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVA 488 (992)
Q Consensus 434 -------~v~~~a~~~l~~l~---------------~~~--~~~~~~~~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~ 488 (992)
.-|.....++...- ..+ -..+.+-+.+++..|+..++. .+..+|..+..+++.++
T Consensus 262 ~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li 341 (441)
T PF12054_consen 262 SALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLI 341 (441)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 01111111111110 000 022333455555555555554 46789999999999988
Q ss_pred HHhhccCcccHHHHHHHHHHHH
Q 001945 489 AAAEQAFIPYAERVLELLKIFM 510 (992)
Q Consensus 489 ~~~~~~~~~~~~~~~~~l~~~l 510 (992)
..+...-..-.+.++.-|..++
T Consensus 342 ~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 342 QLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHhCCCCCCcHHHHHHHhhhh
Confidence 8766333333455666565555
No 249
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.86 E-value=15 Score=39.14 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhh-----hh
Q 001945 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE-----TI 149 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~-----~~ 149 (992)
.-..+.+.+...+..|.++........+++.-...... ..=+.++..+...+++..+.+|...+..++.++. ..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 45667778888888889998888888888765443311 2335688888888988888899999999998875 22
Q ss_pred hhcccccHHHHHHHHHHhcCCCCChHHH----HHHHHHHHHhhcccCChhhHH--HHHhhH----HHHHHHHHHHhhc-C
Q 001945 150 GQTFRPHFADMQALLLKCLQDETSNRVR----IAALKAIGSFLEFTNDGAEVV--KFREFI----PSILNVSRQCLAS-G 218 (992)
Q Consensus 150 ~~~~~~~~~~i~~~l~~~l~~~~~~~vr----~~a~~~l~~l~~~~~~~~~~~--~~~~~~----~~ll~~l~~~l~~-~ 218 (992)
.....+..+.++..+.+..++ +.+... ..|.-.+. ......+..+.. ....+. |.++-. .+..+. .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~-p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~-~kvyskl~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASAN-PLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLS-EKVYSKLA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcC-HHHHhccC
Confidence 233344556666777677676 433322 11111111 111100000000 000000 111100 011111 3
Q ss_pred CHHHHHHHHHHHHHHhcCCccchHHH-HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHH
Q 001945 219 EEDVAVIAFEIFDELIESPAPLLGDS-VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (992)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (992)
+++.....++.+..+........... ...+.+.++-++-++.....+|..|.+.+..+....|..+. ..++..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~-----~~li~~l 249 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLS-----KSLISGL 249 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHH
Confidence 44555666677766665544333222 23444445555555555789999999999988876665422 3466667
Q ss_pred hhhhccCC
Q 001945 298 CPLLAESN 305 (992)
Q Consensus 298 ~~~l~~~~ 305 (992)
-.++...+
T Consensus 250 ~~~l~~~~ 257 (339)
T PF12074_consen 250 WKWLSSSE 257 (339)
T ss_pred HHHHHhcc
Confidence 77776544
No 250
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.85 E-value=1.7 Score=51.18 Aligned_cols=150 Identities=16% Similarity=0.226 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHH--------------HHHhHHHHHH
Q 001945 319 AAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW--------------MKEKLESVLH 381 (992)
Q Consensus 319 a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~--------------~~~~l~~i~~ 381 (992)
+...+..+..... .+++..+.+++..-....+...|.+|+.+++.++...... ...+.+.+..
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQ 493 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHH
Confidence 4445555444432 4444545554432222345678899999999988642111 1122344444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC---ChHHHHHHHHHHHHHHHhhccccccch
Q 001945 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE---SDEVKEKSYYALAAFCEDMGEEILPFL 458 (992)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~ 458 (992)
.+-......+...+..++++||++... ..++.+...+.+. +..+|..|+++|..+...++.
T Consensus 494 ~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~------ 557 (618)
T PF01347_consen 494 ELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE------ 557 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH------
T ss_pred HHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH------
Confidence 444455567778899999999988642 3566666666655 578999999999977554443
Q ss_pred HHHHHHHHHHhcCC--CHhHHHHHHHHHH
Q 001945 459 DPLMGKLLAALENS--PRNLQETCMSAIG 485 (992)
Q Consensus 459 ~~l~~~l~~~l~~~--~~~v~~~a~~~l~ 485 (992)
.+.+.+.+++.+. +.++|..|+..+-
T Consensus 558 -~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 558 -KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp -HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 3445555555543 5778988876544
No 251
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.78 E-value=13 Score=38.27 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (992)
+|-.-+..+....-..+..+.+.+..++..+++++.|++..+...+...+..+....++. .+...+...+-. +
T Consensus 113 Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii~-s 185 (307)
T PF04118_consen 113 VKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCIIT-S 185 (307)
T ss_pred hHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHhc-C
Confidence 343334444433334445677788899999999999999999999999999999887654 234444444443 4
Q ss_pred hHHHHHHHHHHHHHHHhhc------------cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 001945 433 DEVKEKSYYALAAFCEDMG------------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (992)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 485 (992)
+.+|..|...+..-..... .-+.+--.-++..+...+++.+.-|+..++..+-
T Consensus 186 p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 186 PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 6788888777765443322 1123445567778888888887777777776654
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.57 E-value=17 Score=42.86 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=62.3
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC---ChhHHHHHHHHHHHhHhhh
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP---EQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~ 409 (992)
.+.+.+.+.+.......+...+..++.+||.+... .+++.+.+.+.+. ...+|.+|++++..+....
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 45556666666666677788899999999998753 3456666666544 7899999999999887766
Q ss_pred cHHHHhhhhhHHHHHHHhcccC--ChHHHHHHHHHHHH
Q 001945 410 QPEIVSHYESVLPCILNALEDE--SDEVKEKSYYALAA 445 (992)
Q Consensus 410 ~~~~~~~~~~ll~~l~~~l~~~--~~~v~~~a~~~l~~ 445 (992)
+.. +.+.++..+.+. +..+|.+|+..|-.
T Consensus 556 ~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 556 PEK-------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 432 444445554443 36788888766543
No 253
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.55 E-value=13 Score=37.43 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001945 354 REAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (992)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (992)
-..||.-+++..+..|+...-... ..-..++..+++++++||..|+.++..+.
T Consensus 374 i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 374 ICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred EeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 456788888888887765332211 34567888899999999999999887654
No 254
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=15 Score=37.36 Aligned_cols=317 Identities=15% Similarity=0.150 Sum_probs=157.5
Q ss_pred CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHhhcccCC
Q 001945 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.++-++-... +..+++......++..+..+...-++.+...- +.++...|... .+.++-...+.++..-+...+.
T Consensus 105 a~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g---~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~ 180 (461)
T KOG4199|consen 105 AHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEA---MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEV 180 (461)
T ss_pred CcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcccc---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH
Confidence 3444444333 46667777777888888888766665554332 34455555532 4667777777777665544321
Q ss_pred hhhHHHH--HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc---------cchHHHHHH-HHHHHHHHhhCCCC
Q 001945 194 GAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---------PLLGDSVKS-IVHFSLEVSSSHNL 261 (992)
Q Consensus 194 ~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l~~-li~~~~~~~~~~~~ 261 (992)
. .+.| ....|.+.+.+.+ .+..++....++.+..+..... .+-+.+... ++..+.+.... ..
T Consensus 181 n--rQ~~m~~~il~Li~~~l~~---~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A-~~ 254 (461)
T KOG4199|consen 181 N--RQLFMELKILELILQVLNR---EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA-GI 254 (461)
T ss_pred H--HHHHHHhhHHHHHHHHHcc---cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc-cC
Confidence 1 1111 1233444443321 2333566677777776654321 011111111 12222222221 12
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHhh---hcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHH
Q 001945 262 EPNTRHQAIQIISWLAKYKYNSLK---KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~---~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 338 (992)
++++-......+..++-. ...++ ..+- +..++..+.+..+ ...|..+..|++.+....|.
T Consensus 255 dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GG----l~tl~~~i~d~n~------~~~r~l~k~~lslLralAG~------ 317 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVR-DEICKSIAESGG----LDTLLRCIDDSNE------QGNRTLAKTCLSLLRALAGS------ 317 (461)
T ss_pred CccHHHHHHHHHHHHHHH-HHHHHHHHHccC----HHHHHHHHhhhch------hhHHHHHHHHHHHHHHHhCC------
Confidence 344444444444444321 11111 1111 1222333332221 12333344444333332221
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh--HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
++ ..+.+... ++.|+....... .+|.|...++.+++.++-..++.-...
T Consensus 318 ----------Ds-----------------vKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pdhsa~~ 368 (461)
T KOG4199|consen 318 ----------DS-----------------VKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRSPDHSAKA 368 (461)
T ss_pred ----------Cc-----------------hHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcCcchHHHH
Confidence 00 01111111 334444444433 467788999999998888765433333
Q ss_pred hh-hHHHHHHHhccc-C-ChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHH
Q 001945 417 YE-SVLPCILNALED-E-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 417 ~~-~ll~~l~~~l~~-~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l 487 (992)
++ ..-...++.+.. | ...||..+|+.+.+++......-.+.+..=++.|+..-...++..+..+-.++..+
T Consensus 369 ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 369 IEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 32 233444555553 3 25799999999999998877666777777778887776666666665555555444
No 255
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.06 E-value=1.9 Score=39.40 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH----------------HHHHHhHHHH
Q 001945 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----------------EWMKEKLESV 379 (992)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----------------~~~~~~l~~i 379 (992)
+.....++..++..--...||.+++.+.+.+++ +...+...+..|..+.+... +.+....+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 334445555555444334566677766666655 45566667766666655321 1233445566
Q ss_pred HHHHHhhcCCCC----hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHH
Q 001945 380 LHIVLGALRDPE----QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYAL 443 (992)
Q Consensus 380 ~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l 443 (992)
++.+.+.+.... ..+...++.+++.+..+.+...... ..+++.+++.++++ ..+..|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 666666665322 7889999999999999876543222 45899999999665 4477777765
No 256
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.87 E-value=31 Score=40.42 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccc
Q 001945 377 ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455 (992)
Q Consensus 377 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 455 (992)
..++..|...++ |....|+.+|+..+..+..++. ....++.++-.|-....|+...||..+|.+|..+...-+.- .
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD--~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~-~ 651 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCD--EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRL-F 651 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccc--hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchh-h
Confidence 467888888888 8888899999999998888764 23445556666666777888899999999999887554432 2
Q ss_pred cchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 456 PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 456 ~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
..-..-+..++..+.+.+..+.+.+...|..+..
T Consensus 652 ~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 2333445566667777788888888886665543
No 257
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.59 E-value=16 Score=36.41 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHH
Q 001945 216 ASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (992)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (992)
+..+++.....++.|..++.+.. ...+.+++.+......+ ..+.+..++..+..+.+..+..+ +++..++.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~--~~~~~~~~~rLl~~lw~~~~r~f---~~L~~~L~ 81 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQG--SLELRYVALRLLTLLWKANDRHF---PFLQPLLL 81 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCC--chhHHHHHHHHHHHHHHhCchHH---HHHHHHHH
Confidence 34667777888888888877642 33444555555555444 33444556666666655433322 12322222
Q ss_pred HHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHH
Q 001945 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKE 374 (992)
Q Consensus 296 ~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~ 374 (992)
...-...... .+++..|........++..++...++ ..+.+++.+...+ ++.+...+..++.++..+.+..--++
T Consensus 82 ~~~~r~~~~~-~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-- 157 (234)
T PF12530_consen 82 LLILRIPSSF-SSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-- 157 (234)
T ss_pred HHHhhccccc-CCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH--
Confidence 2111111111 11233445555556677778877776 6667777777778 67777788888888888885422222
Q ss_pred hHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhh--cHHHHhhhhhHHHHHHHhcccCCh
Q 001945 375 KLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYL--QPEIVSHYESVLPCILNALEDESD 433 (992)
Q Consensus 375 ~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~ll~~l~~~l~~~~~ 433 (992)
......+.+.++ +..|.|-..-+..+.-+...- .++.......++..+.+.....+.
T Consensus 158 --~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 158 --YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 233444555454 455666554443333222111 122333456777888887776653
No 258
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.53 E-value=8.9 Score=44.57 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred HhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCch--------hhcHhhhHHHHHHhc
Q 001945 804 SDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPI--------AAYVDRVMPLVLKEL 875 (992)
Q Consensus 804 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~--------~~~~~~~~~~ll~~l 875 (992)
++++..+......--..+++.+++.+-..-. ......+..++-.++.+++...... ..+.+.+...+-+..
T Consensus 377 ~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~-~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 377 AQLLAVLPHTARYPTEEILKALFELAESPEV-QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 3444444444333233444444443322111 1122467788888888887432221 123333333333344
Q ss_pred CCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhC-CCCCChhhHhhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001945 876 ASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFG-DSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLL 954 (992)
Q Consensus 876 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~n~~~~l~~l~~~~~~~~~~~~~l~~~l 954 (992)
+..+.+.+..++.+||.+..- ..+..+.+.+. +......+|-.|+-||-++...+|..+. +.+++.+.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-~~l~~i~~ 524 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ-EVLLPIYL 524 (574)
T ss_pred hcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHc
Confidence 456677788888999977632 23333334443 2233456788888888888777665442 44555554
Q ss_pred h
Q 001945 955 K 955 (992)
Q Consensus 955 ~ 955 (992)
+
T Consensus 525 n 525 (574)
T smart00638 525 N 525 (574)
T ss_pred C
Confidence 4
No 259
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.40 E-value=2.7 Score=37.71 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=61.0
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc--hHHHHHHHHHHhcC-CCHhHHHHHHHHHHHHHHHhhc
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
...+..+.+.+.+.++.|+..|+..|..++++|+..+... -..+++.|..++.. .+..|+..+++.+...+..+++
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4577888888899999999999999999999998755421 23666777777776 6889999999999888877763
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.31 E-value=5.5 Score=35.71 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
..+..+.+.+.++++.++..|+..|..+.+.++..+...+ ..++..+...+. ..++.|+..++..+......++.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 6678888889999999999999999999999887655422 456666666665 45688999999999999888764
No 261
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.03 E-value=4.5 Score=35.93 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccc---CChHHHHHHHHHHHHHHHhhc
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED---ESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~---~~~~v~~~a~~~l~~l~~~~~ 451 (992)
...+..|.+.+.++++.++..|+..|..+...+++.+...+ ...+..+...+.. .++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678888889999999999999999999999987665432 2555556666654 367899999999999988876
Q ss_pred cc--cccchHHHHHH
Q 001945 452 EE--ILPFLDPLMGK 464 (992)
Q Consensus 452 ~~--~~~~~~~l~~~ 464 (992)
.. -.+++..+...
T Consensus 116 ~~~~~~~~~~~~y~~ 130 (133)
T cd03561 116 GHSEDLPGIEDAYKL 130 (133)
T ss_pred CCCccchHHHHHHHH
Confidence 42 23444444443
No 262
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.02 E-value=0.43 Score=31.82 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=26.8
Q ss_pred hhHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 001945 866 RVMPLVLKELASPDAMNRRNAAFCVGELC 894 (992)
Q Consensus 866 ~~~~~ll~~l~~~~~~vr~~a~~~l~~l~ 894 (992)
..+|.+++.+.+.+.+++.+|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999986
No 263
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.94 E-value=44 Score=41.40 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred HhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHH--HHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCC
Q 001945 864 VDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYG--DILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNP 941 (992)
Q Consensus 864 ~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~ 941 (992)
-.+.+..++..|.+....+-.|+|.+|..+....+.+- +++- ..+.-|.++|.. .+.++...++++|-.++.+-|
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhS--KhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHS--KHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhh--hhhhhhhhHHHHHHHHhcCCc
Confidence 36789999999999999999999999999998887531 1211 223345566653 345555667777777666544
No 264
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=1.1 Score=41.62 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcC---cch
Q 001945 825 LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG---ESA 901 (992)
Q Consensus 825 l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~---~~~ 901 (992)
++|.+...+.+.+.+ .|..|-.-+-|++..+|..+.|-+|+++..+-..+...|.++...++..|.+++...+ .++
T Consensus 115 yLp~F~dGL~e~~hp-yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHP-YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCC-cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 455555555544443 5888888888999999999999999999999999999999999999999998887654 577
Q ss_pred hhHHHHHHHhhhh
Q 001945 902 LKYYGDILRGLYP 914 (992)
Q Consensus 902 ~~~~~~~l~~l~~ 914 (992)
-|||.+++..+..
T Consensus 194 VPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 194 VPFYRQLLPVLNT 206 (262)
T ss_pred hhHHHHhhhhhhh
Confidence 8999999987743
No 265
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=35 Score=38.47 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=94.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCC-c----cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH
Q 001945 209 NVSRQCLASGEEDVAVIAFEIFDELIESP-A----PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS 283 (992)
Q Consensus 209 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~----~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 283 (992)
..+++.++..+..++..|...+.++.... | .-++..++.-+..+..+.+++ -+.+|..|+.-+..+....=.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~--~p~VRS~a~~gv~k~~s~fWe- 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP--YPMVRSTAILGVCKITSKFWE- 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHHH-
Confidence 35567778888899999999998886543 2 235666777777788888766 778998887655444321100
Q ss_pred hhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 001945 284 LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIG 362 (992)
Q Consensus 284 ~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~ 362 (992)
+.....+..++..++.-+.... ..++|-...+++..+...-. -..+..++|.+...+.+..-++|.|+...+.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt------~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDT------SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhcc------chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 1111122223333333333221 12466666677766554333 5567778888888889999999999998887
Q ss_pred HHhh
Q 001945 363 IISE 366 (992)
Q Consensus 363 ~i~~ 366 (992)
.+-.
T Consensus 328 ~ik~ 331 (1005)
T KOG1949|consen 328 KIKA 331 (1005)
T ss_pred HHHh
Confidence 7654
No 266
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.26 E-value=0.52 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (992)
..+|.++..+.++++.||..|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999886
No 267
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=17 Score=45.38 Aligned_cols=230 Identities=11% Similarity=0.156 Sum_probs=121.3
Q ss_pred hcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-hhhccc---ccHHHHHHHH
Q 001945 89 LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET-IGQTFR---PHFADMQALL 164 (992)
Q Consensus 89 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~-~~~~~~---~~~~~i~~~l 164 (992)
...+..||..+.+|++.-.+ ..|..++..+.....+.+....+.++..+..+... +...+. ..+.+.++.+
T Consensus 1047 ~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl 1121 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCL 1121 (1514)
T ss_pred ccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHH
Confidence 34567799999999883222 48999999988888888888888888888855543 333333 2233445555
Q ss_pred HHhcCCCCChHHHHHHHHHHHHhhcccCCh---hh--------HH-HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001945 165 LKCLQDETSNRVRIAALKAIGSFLEFTNDG---AE--------VV-KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (992)
Q Consensus 165 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~--------~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~ 232 (992)
.+...+...+..-..+++.+..++....+. .. .. ....++|.+... .........+++..+++.+..
T Consensus 1122 ~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vlF~ 1200 (1514)
T KOG0929|consen 1122 EEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVLFD 1200 (1514)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHHHH
Confidence 544443223333333333332222222111 00 01 112345555443 333334567889999999988
Q ss_pred HhcCCccchHHHH-HHHHHHHHHHhhCCCCC-------hHHHHHHHHHHHHHHHhhHhHhhhc-CChHHHHHHHhhhhcc
Q 001945 233 LIESPAPLLGDSV-KSIVHFSLEVSSSHNLE-------PNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAE 303 (992)
Q Consensus 233 l~~~~~~~~~~~l-~~li~~~~~~~~~~~~~-------~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l~~ 303 (992)
+...++..|.... ..++..++.++.+-..+ +.....+...+..++......+... ..++.++..+......
T Consensus 1201 il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~ 1280 (1514)
T KOG0929|consen 1201 ILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQ 1280 (1514)
T ss_pred HHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877766554443 44556555555443222 2223333333333332222211110 1334444444433443
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHcc
Q 001945 304 SNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (992)
Q Consensus 304 ~~~~~~d~~~~~~~~a~~~l~~l~~~~~ 331 (992)
.++ ...+.+..|+..+....|
T Consensus 1281 ~n~-------~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1281 DNQ-------QLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred cch-------hhHHhHHHHHHHHHHhcc
Confidence 332 567778888888777666
No 268
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=55 Score=40.33 Aligned_cols=255 Identities=14% Similarity=0.145 Sum_probs=130.9
Q ss_pred CCHhHHHHHHHHHHHHHcccCCC--CCCcchHHHHHHhhcCC---CHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHHHH
Q 001945 91 HSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSE---QEEHREVALILFSSLTETIGQTF-RPHFADMQALL 164 (992)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~---~~~~~~~al~~l~~l~~~~~~~~-~~~~~~i~~~l 164 (992)
+...+|..--.++-.+....+.. ..|+.+++.+-...... +.+....++.+|.-+...+-+.+ ...+..+++.+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 33445544445555554433221 24998888777665544 45667778888888876654332 23445566666
Q ss_pred HHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHH
Q 001945 165 LKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDS 244 (992)
Q Consensus 165 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 244 (992)
...-+...+..+-..|+..+..+-.+...+ .-..++........+.+..-+......-...
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~k-------------------m~S~sed~~~~~~~e~~~ss~~~~~~l~e~l 994 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNK-------------------MFSTSEDSCAYNSVEDLYSSMKSKEILPEVL 994 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhh-------------------hhccchhhhhhcchhhhcccccchhhhhhHH
Confidence 655554466667666665554444433210 0000111111111111111000000000111
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhcc--------CCCCCCCCCCch-
Q 001945 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE--------SNEAGEDDDLAP- 315 (992)
Q Consensus 245 l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~--------~~~~~~d~~~~~- 315 (992)
.--++..+.+.+.+. -.++|..|.+.+..+....+..+....+..-+...++++|.. |..++..++|..
T Consensus 995 wi~ll~~L~~~~~ds--r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet 1072 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDS--RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTET 1072 (1610)
T ss_pred HHHHHHHHHHHhccc--hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhh
Confidence 111233334445444 678999999988888766555444433444455677777762 221111122221
Q ss_pred HHHHHHHHHHHH-HH------c-c-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhh
Q 001945 316 DRAAAEVIDTMA-LN------L-A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (992)
Q Consensus 316 ~~~a~~~l~~l~-~~------~-~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (992)
......++..+. ++ + + .++|..+++++.....+.+.+...+++.++..+.-
T Consensus 1073 ~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 111222222221 11 1 2 46788899999999999999999999988877654
No 269
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.99 E-value=5 Score=38.58 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhc--HhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc-c-
Q 001945 825 LFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY--VDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE-S- 900 (992)
Q Consensus 825 l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~-~- 900 (992)
+.|++.....+....-.|..++|++|.+++.....+..| -..++|..++.+......-+..|++-++.+.-.... .
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~Y 204 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYY 204 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHH
Confidence 445554433333333479999999999999876665555 368899999999998888999999999998754321 1
Q ss_pred ----hh--hHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHH
Q 001945 901 ----AL--KYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (992)
Q Consensus 901 ----~~--~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~ 938 (992)
+. ..+..++..+.--+. +.....+..+++.|.-++.-
T Consensus 205 iCqt~eRF~av~~~L~kmv~~l~-~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 205 ICQTAERFSAVALVLGKMVFQLV-SMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcC
Confidence 10 123334444333332 34456677777888766543
No 270
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=89.93 E-value=27 Score=36.33 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=122.4
Q ss_pred cCCChhhHHHHHHHHH--HHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhhhhHHH
Q 001945 347 QNASPKYREAAVTAIG--IISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESVLP 422 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~--~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~ll~ 422 (992)
.+.+.+.|.+++..+. ..++..++.+.+....+...+..+++-+...-+..+...+|..+...+ +...+......|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 4566788888887654 444667788888888899999999998777766666666776666554 333345555666
Q ss_pred HHHHhcccCC--hHHHHHHHHHHHHHHHhhccc---cccchHHHHHHHHHH-hcCC---------CHhHHHHHHHHHHHH
Q 001945 423 CILNALEDES--DEVKEKSYYALAAFCEDMGEE---ILPFLDPLMGKLLAA-LENS---------PRNLQETCMSAIGSV 487 (992)
Q Consensus 423 ~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~-l~~~---------~~~v~~~a~~~l~~l 487 (992)
.+...+.+.+ ...+..++.++..-+-..... +..++..+-...... +.+. .......++.+++-+
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 229 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL 229 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence 6666565554 555677777776554433211 112221111111111 1121 122334555556655
Q ss_pred HHHhhccCcccHHH-HHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 001945 488 AAAAEQAFIPYAER-VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (992)
Q Consensus 488 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (992)
...++.....+... .+|.+..++.....+....+..++..+..+++....+.+-|..+++...+-.
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~ 296 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRD 296 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHH
Confidence 55555444444433 5677777776554455555667888888888777665666777776665443
No 271
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=89.49 E-value=3.5 Score=34.47 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccC
Q 001945 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDE 431 (992)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~ 431 (992)
++.+.++.+.++.++..++.+-.+.||..+...|.-+.+..++. +..+...+++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 35677889999999999999999999999999999999999887 5677888999888887654
No 272
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=89.24 E-value=18 Score=40.63 Aligned_cols=242 Identities=14% Similarity=0.151 Sum_probs=121.8
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHH-----HHhhcC------CCChhHHHHHHHHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHI-----VLGALR------DPEQFVRGAASFAL 402 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~-----l~~~l~------d~~~~vr~~a~~~l 402 (992)
+...++.++.....+.+-..|..+...++.+....+-...+.+-+++.. .++.++ +.++.+-..++..+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 3455667777777888889999999999998876543222222223332 223332 34565555555444
Q ss_pred HHhHhhhcHHHHhhhhhHHHHHHHhcccCC--------hHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHH-HhcCC
Q 001945 403 GQFAEYLQPEIVSHYESVLPCILNALEDES--------DEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLA-ALENS 472 (992)
Q Consensus 403 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--------~~v~~~a~~~l~~l~~~~~~~~~~~~~~l-~~~l~~-~l~~~ 472 (992)
+ ++...+-+..+.+ +.+.+.++++-.. ..+|.++|..+-++.+...+.+.+-++.. .-.++. .+-++
T Consensus 323 a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp 399 (993)
T COG5234 323 A-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP 399 (993)
T ss_pred H-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence 4 3333222222222 5555666665332 35788888888888776555555544433 333333 45567
Q ss_pred CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHH-H
Q 001945 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEA-A 551 (992)
Q Consensus 473 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~-l 551 (992)
.-.+|..|..++-.+... ..-.+.-..++..+ + ...+. +.-+|-+.+.+.+.+..=...+..+++. +
T Consensus 400 el~vRr~a~Aal~E~iGR--~~s~a~g~~lIslI----N-----~~sv~-r~s~csg~~~r~~~~~~k~~~CedVF~diL 467 (993)
T COG5234 400 ELNVRRAATAALFEVIGR--HASIADGLSLISLI----N-----YVSVT-RISNCSGDLCRKVAHFPKFRSCEDVFQDIL 467 (993)
T ss_pred hhhhhhHHHHHHHHHhcc--CCCcccchhhhhhc----c-----ceecc-hhhhcchHHHHHhcCccccchHHHHHHHHH
Confidence 777888777666554433 11112222222222 1 11111 2345556666655432211122234444 5
Q ss_pred HhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHH
Q 001945 552 ISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPL 591 (992)
Q Consensus 552 ~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~ 591 (992)
++.+..-++.++....-++..+.+ .|....-|+|.++..
T Consensus 468 l~Nl~H~~~~~k~~~~y~l~~liK-~~~~~p~yl~~Il~k 506 (993)
T COG5234 468 LTNLQHWDVKVKQLSAYSLRQLIK-YPKELPIYLPPILDK 506 (993)
T ss_pred HhhhhccchhhhhhccccHHHHhc-CcccCchhhhHHhhh
Confidence 555554445555555455555533 233333356555433
No 273
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.20 E-value=6.8 Score=35.19 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccCh-hhhHh
Q 001945 444 AAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTND-EDLRS 520 (992)
Q Consensus 444 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~-~~~~~ 520 (992)
..+++..... .......+..|.+.+.++++.++..|+..+..++..+|..|...+ ..++..+..++..... +...+
T Consensus 27 l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~V 105 (140)
T PF00790_consen 27 LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPV 105 (140)
T ss_dssp HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHH
T ss_pred HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHH
Confidence 3444444332 344567888888899999999999999999999999987775544 4577777777765432 22237
Q ss_pred HHHHHHHHHHHHHhhch
Q 001945 521 RARATELLGLVAESVGR 537 (992)
Q Consensus 521 ~~~~~~~l~~l~~~~~~ 537 (992)
|.+++..+...+..++.
T Consensus 106 k~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 106 KEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 88899999999887743
No 274
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.18 E-value=17 Score=34.61 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc
Q 001945 820 PIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE 899 (992)
Q Consensus 820 ~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~ 899 (992)
..+++.++.+++....++. .+|..|+.+++-+++.|=. +=.+.+|.++....|+++.+|..|...+..+.++.++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~-~vr~~Al~~l~~il~qGLv----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDD-SVRLAALQVLELILRQGLV----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhcCCC----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 3556778888887666555 5899999999998886422 2236788888888999999999999999999988776
Q ss_pred chhhHHHHH--------------------------HHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCC---------C
Q 001945 900 SALKYYGDI--------------------------LRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQS---------I 944 (992)
Q Consensus 900 ~~~~~~~~~--------------------------l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~---------~ 944 (992)
-+..-+.+- +..++.++. .+...|...+..+.+.+...... +
T Consensus 79 ~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~---~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 79 LVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR---SNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh---cccHhHHHHHHHHHHHHHhhccccccccchhHH
Confidence 432222221 122222222 12345666677777777665421 1
Q ss_pred ChhhHHHHHHhhCCCCCcHHhhHHHHH
Q 001945 945 PLNQVLPVLLKVLPLKEDFEESMAVYN 971 (992)
Q Consensus 945 ~~~~~l~~~l~~lp~~~d~~e~~~~~~ 971 (992)
+.-.++..-+..+|++. .||--.+..
T Consensus 156 ~~~~Fla~nLA~l~y~~-~~E~l~vi~ 181 (187)
T PF12830_consen 156 DFLLFLAENLATLPYQT-QDEVLYVIH 181 (187)
T ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHH
Confidence 12234555567778754 444444433
No 275
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=89.07 E-value=4.5 Score=39.77 Aligned_cols=99 Identities=9% Similarity=0.175 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHhhcCCchhhcH--hhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc-c----hhhHHHHHHHhhh
Q 001945 841 DRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE-S----ALKYYGDILRGLY 913 (992)
Q Consensus 841 ~r~~al~~l~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~-~----~~~~~~~~l~~l~ 913 (992)
.|..++|++|.+++.-...+..|+ ..++|..++.+...+.-.|..|.+-+.++...... . ....+..+...|.
T Consensus 112 LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~ 191 (262)
T PF04078_consen 112 LRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLN 191 (262)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHH
Confidence 688999999999987655566654 68999999999988888899999999998754321 0 1122223333333
Q ss_pred hhhC--CCCCChhhHhhHHHHHHHHHHh
Q 001945 914 PLFG--DSEPDDAVRDNAAGAVARMIMV 939 (992)
Q Consensus 914 ~~l~--~~~~~~~~~~n~~~~l~~l~~~ 939 (992)
.++. ..+....+-.+++.|.-|+...
T Consensus 192 ~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 192 KMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 3332 1233566777888888887654
No 276
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.07 E-value=36 Score=36.55 Aligned_cols=236 Identities=15% Similarity=0.100 Sum_probs=123.1
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHH-HHHHHHHhhcC-C-CChhHHHHHHHHHHHhHhhh
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALR-D-PEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~ 409 (992)
..+..+.+.+...+-+++..+|.+|+..+..+...... +..... .+--.+...+. | .+..=|..|++.+..+.+.-
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 34556666666555455588999999999888776432 111111 11223344443 2 45567888999999998773
Q ss_pred cHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 410 QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 410 ~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
+ .....-..++..++....+++.+.|..|..++.+++-..|+-+. ..+ -+..+.+.+.++..++.+..+.++-.+..
T Consensus 100 ~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~-~~g-G~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 100 K-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA-ECG-GIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred C-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH-HcC-CHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 2 11222356888888888888889999999999888755443211 111 11233333333333344444444444443
Q ss_pred Hhh--ccCcccHHHHHHHHHHHHhcc------Chhh-hHhHHHHHHHHHHHHHhh-chhhccCChHHHHHHHHhccCCCC
Q 001945 490 AAE--QAFIPYAERVLELLKIFMVLT------NDED-LRSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEF 559 (992)
Q Consensus 490 ~~~--~~~~~~~~~~~~~l~~~l~~~------~~~~-~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~i~~~l~~~l~~~~ 559 (992)
... ..+.+.++ +..+...++.. ++.+ .+++. +-.++..+-++. |--.|...--.-+..++..+..++
T Consensus 177 ~p~tR~yl~~~~d--L~~l~apftd~~~~~~~~~~~~~~l~~-s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 177 SPRTRKYLRPGFD--LESLLAPFTDFHYRKIKDDRELERLQA-SAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN 253 (371)
T ss_pred CcchhhhhcCCcc--HHHHHHhhhhhhccccccchHHHHHHH-HHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC
Confidence 221 11222111 12222222211 1111 13332 333444444332 211122211145666677777788
Q ss_pred chhhHHHHHHHHHHHH
Q 001945 560 SELREYTHGFFSNIAG 575 (992)
Q Consensus 560 ~~~r~~~~~~~~~i~~ 575 (992)
+++|+..+..+-.+..
T Consensus 254 ~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 8899888776666554
No 277
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.85 E-value=22 Score=33.86 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
....++.+.+...+++..+|..|+..++.+....- . +=...+|.++....|+++.+|..|...+..+.+..+.-+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL--v--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL--V--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC--C--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 44556666667888999999999999999887421 0 112578999999999999999999999999988875433
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.46 E-value=9.9 Score=33.73 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHh
Q 001945 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 534 (992)
.....+..+.+.+.++++.++..|+..+..++..+|..|-..+ ..++..|..++....+.. .++.+++.++...+..
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~-~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP-LVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHH
Confidence 3456778888888999999999999999999999988775443 447777777776543322 2778899999988877
Q ss_pred hch
Q 001945 535 VGR 537 (992)
Q Consensus 535 ~~~ 537 (992)
+..
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 753
No 279
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.32 E-value=5.5 Score=35.36 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=59.5
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccc-cchH-HHHHHHHHHhcC---CCHhHHHHHHHHHHHHHHHhh
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLD-PLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~-~l~~~l~~~l~~---~~~~v~~~a~~~l~~l~~~~~ 492 (992)
...+..+-+.+..+++.++..|+..|..++++++..+. .+.. ..+..+..++.. .+..|+..+++.+..-...++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34777888888999999999999999999999987553 2332 455556666654 478899999999998888776
Q ss_pred c
Q 001945 493 Q 493 (992)
Q Consensus 493 ~ 493 (992)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.16 E-value=12 Score=33.26 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~ 452 (992)
..+..+.+.+.++++.++..|+..|..+...++..+...+ ..++..+...+.++. +.|+..+...+......+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 5678888899999999999999999999999887665432 456777777766543 34999999999988887754
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=87.85 E-value=12 Score=32.27 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh---hHHHHHHHhcc--c------CChHHHHHHHHHHH
Q 001945 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE---SVLPCILNALE--D------ESDEVKEKSYYALA 444 (992)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~ll~~l~~~l~--~------~~~~v~~~a~~~l~ 444 (992)
...++..+.+.|++.++.|+..|+++|..++...++.+...+. .++..+...-. | +...||..|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5588999999999999999999999999999988776655432 23333333222 2 23568888888877
Q ss_pred HHHH
Q 001945 445 AFCE 448 (992)
Q Consensus 445 ~l~~ 448 (992)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6653
No 282
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=87.66 E-value=5.6 Score=36.20 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=58.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhcCCCC--ccchhh-HHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCC-------
Q 001945 810 FAKSMGPHFAPIFAKLFDPLMKFAKSSRP--LQDRTM-VVATLAEVARDMGSPIAAYVDRVMPLVLKELASPD------- 879 (992)
Q Consensus 810 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~r~~-al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 879 (992)
+.|..-..|.|++.+++.+-...+.+.+. ...|.. -.+.+..+.+.+..-..||...+++...+.|+..+
T Consensus 49 V~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~ 128 (153)
T PF08146_consen 49 VLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESK 128 (153)
T ss_pred HHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 34444457888888887776654443222 224444 44556667778887888999999998877775332
Q ss_pred ---hHhHHHHHHHHHHHHhhcCc
Q 001945 880 ---AMNRRNAAFCVGELCKNGGE 899 (992)
Q Consensus 880 ---~~vr~~a~~~l~~l~~~~~~ 899 (992)
...+...+.+|..+..+..+
T Consensus 129 ~~~~~L~~~vL~~L~~~F~~D~~ 151 (153)
T PF08146_consen 129 SKSWELWRLVLSTLQKCFLHDQD 151 (153)
T ss_pred hhHHHHHHHHHHHHHHHHhhccC
Confidence 45666677777777666544
No 283
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=86.85 E-value=3.2 Score=33.30 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001945 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFD 231 (992)
Q Consensus 157 ~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~ 231 (992)
-.+++..+...+.+.++.++|...+.|+..++....+ .+..-++.++..+.....+++++....|++++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3567777777766658999999999999999987632 256667889999988877778888888887764
No 284
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=86.72 E-value=3 Score=33.49 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCC--CCCCcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001945 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSS 144 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~ 144 (992)
.+..+...+...+.+.++..+|..+..++..+...... ...|+.++..+.....+++......|++++..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 45556666666666667899999999999998763222 25899999999999998888888899888764
No 285
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.60 E-value=10 Score=33.83 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=56.8
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhc------CCCHhHHHHHHHHHHHHHH
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALE------NSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~------~~~~~v~~~a~~~l~~l~~ 489 (992)
...+..+.+.++++++.++..|+..|..++++|+..+...+ ..++..+.+++. ..+..|+..++..+-.-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34677788889999999999999999999999987654211 244555555553 2568899999998888777
Q ss_pred Hhh
Q 001945 490 AAE 492 (992)
Q Consensus 490 ~~~ 492 (992)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 665
No 286
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=79 Score=39.74 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=82.9
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHhhcCHHH-HHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001945 341 FASVSCQNASPKYREAAVTAIGIISEGCAEW-MKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (992)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (992)
.+.+.+.-.|...|.-|+..++.+.+..... ....++.......+...|++..||......+..+...++..+.+++..
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3444455677888999999999988765422 222345555556666779999999999999999999998889999999
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 420 VLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 420 ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
++|..+-+.-|....|...|...+....
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhc
Confidence 9999999998888777777777666544
No 287
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.37 E-value=14 Score=36.16 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
+...+.+.++.+|++.-.|.+|+.++...... ...+.++..+...+.|++..||.+..|+|..++...++...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 56777888888888866666666555433333 456678888888899999999999999999999887554444
Q ss_pred hh
Q 001945 416 HY 417 (992)
Q Consensus 416 ~~ 417 (992)
++
T Consensus 193 ~l 194 (213)
T PF08713_consen 193 FL 194 (213)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 288
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=86.34 E-value=65 Score=36.52 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH
Q 001945 314 APDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 369 (992)
..+-+..+.++.+++..- ..+.|.+...+...+.+.+|-.++-|+.++++++++.+
T Consensus 495 ~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 495 HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 467778888888876543 34667777777778999999999999999999999764
No 289
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.73 E-value=57 Score=35.27 Aligned_cols=317 Identities=15% Similarity=0.174 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHHHhh---cCH--HHHHHhHHHHHHHHHhhcCC------C-ChhHHHHHHHHHHHhHhhhcHHHHhh-
Q 001945 350 SPKYREAAVTAIGIISE---GCA--EWMKEKLESVLHIVLGALRD------P-EQFVRGAASFALGQFAEYLQPEIVSH- 416 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~~---~~~--~~~~~~l~~i~~~l~~~l~d------~-~~~vr~~a~~~l~~l~~~~~~~~~~~- 416 (992)
+-..|.-|...|..... +.+ ..+.++++.++..+..-+.. + +.++-..|+++++.+.-. +.+...
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~--~~i~~~l 83 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH--PEIVSTL 83 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc--HHHHhhC
Confidence 33445445544444332 222 34455555555555554433 3 667888999999988755 222221
Q ss_pred ----hhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhcccc-cc-chHHHHHHHHHHhc-CCCHhHHHHHHHHHHHH
Q 001945 417 ----YESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEI-LP-FLDPLMGKLLAALE-NSPRNLQETCMSAIGSV 487 (992)
Q Consensus 417 ----~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~-~~-~~~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l 487 (992)
...++...+..+.+++ +.+.....++|.. .+++..+ .. ..+.++..+...-+ -+...+-.+.+.++-.+
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 1236667777776653 4555666666654 2333322 22 23334444444332 23466778889999999
Q ss_pred HHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHH
Q 001945 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (992)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~ 567 (992)
....++.+....+.-+|.+...+-.. ...+|.+|+.+...+...+|++. .+...+.+.++....
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~l~~~---~k~ir~~a~~l~~~~~~~l~~~~------~~s~~~~~~~~~~~~------- 225 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPDLLSS---AKDIRTKAISLLLEAKKCLGPNK------ELSKSVLEDLQRSLE------- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHhChhH------HHHHHHHHHhccccc-------
Confidence 99888888777776666665554332 22345556666666555555421 111111111211100
Q ss_pred HHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHH
Q 001945 568 GFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAA 647 (992)
Q Consensus 568 ~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 647 (992)
+. .|...+.+.+...+...+ ....
T Consensus 226 -----------~~--~~~~~~~~~L~~mi~~~~-------------------------------------------~~~~ 249 (372)
T PF12231_consen 226 -----------NG--KLIQLYCERLKEMIKSKD-------------------------------------------EYKL 249 (372)
T ss_pred -----------cc--cHHHHHHHHHHHHHhCcC-------------------------------------------Ccch
Confidence 00 111222222222221100 0122
Q ss_pred HHHHHHHHHHHhcc---cccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 001945 648 ATQALGLFALHTKS---SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNI 724 (992)
Q Consensus 648 a~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (992)
+.+..+.+..-++. .-.+++.+.+......++..+..+|..|..+=..++.... . +.....+.+..++.-
T Consensus 250 a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~----~---~~~~~~k~l~lL~~P 322 (372)
T PF12231_consen 250 AMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN----P---NELTSPKRLKLLCQP 322 (372)
T ss_pred HHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc----C---CccccHHHHHHHHHH
Confidence 33344444433442 2345788888888888899999999999998888887432 1 122233445545555
Q ss_pred HHHHHhhCChH----HHHHHHHHHHHHHH
Q 001945 725 FIRTMTEDDDK----DVVAQACTSIVEII 749 (992)
Q Consensus 725 l~~~~~~~~~~----~~~~~~~~~l~~~~ 749 (992)
+...++.+... ++...++.+++.++
T Consensus 323 l~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 323 LSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHhCccccccccHHHHHHHHHHHhchH
Confidence 55445444333 45555556655544
No 290
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.64 E-value=18 Score=32.42 Aligned_cols=113 Identities=11% Similarity=0.027 Sum_probs=72.8
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll 421 (992)
.+.++||..-..-+..+..= +. .-...+..+.+.+. ++++.|...|+..|..+.+.++..+...+ ..++
T Consensus 13 ~l~~~dw~~ileicD~In~~-~~-------~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNMEICDIINET-ED-------GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHHHHHHHHhCC-CC-------cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 34556776554444444321 11 12255777777777 57899999999999999999987665432 3556
Q ss_pred HH-HHHhccc---CChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHH
Q 001945 422 PC-ILNALED---ESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKL 465 (992)
Q Consensus 422 ~~-l~~~l~~---~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l 465 (992)
.. +.+.+.. ....|+..++..+......++.. -.+++..+.+.|
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 55 5666542 34589999999999998887543 124455555544
No 291
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=85.34 E-value=71 Score=36.06 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHhc
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALE 470 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~ 470 (992)
..+-...+..+..++..+- .+...+..++..++..=...+..+|..|.-++..++...... +.+.+-.+.-..+.--.
T Consensus 256 te~~~~~L~~l~~l~~~~~-~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk 334 (661)
T KOG2256|consen 256 TEVLAFTLRHLTVLVPFLA-TFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSK 334 (661)
T ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Confidence 3444444555555554441 123333444444444434445678888888888777665432 33333333333222211
Q ss_pred --CCC-----HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHh-----HHHHHHHHHHHHH-hhc-
Q 001945 471 --NSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS-----RARATELLGLVAE-SVG- 536 (992)
Q Consensus 471 --~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~l~~l~~-~~~- 536 (992)
+.+ ..++..+.+.++.=....-..---|..++--.|++.+...+.++... -..++..+..+.. +.|
T Consensus 335 ~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~ 414 (661)
T KOG2256|consen 335 FVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGS 414 (661)
T ss_pred CCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 010 12333333333321111111111255566666777776544332221 0123333333332 333
Q ss_pred hhhccCChHHHHHHHHhccC----CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001945 537 RARMEPILPPFVEAAISGFG----LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (992)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~----~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~ 596 (992)
.....|.+.++++.++.++. ....++|-.++..+.+++...| .|.|..|.++..+-...
T Consensus 415 ~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~~ 477 (661)
T KOG2256|consen 415 ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSVT 477 (661)
T ss_pred HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHhh
Confidence 34577777888887776554 2255688889999999998887 57787777777665443
No 292
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.25 E-value=16 Score=32.72 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHh
Q 001945 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 534 (992)
.-...+..+.+.+.++++.++..|+..+..++..+|..|-..+ ..++..+.+++.. .....++.+++..+...+..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHHH
Confidence 3457788888888999999999999999999999887665433 4467777777654 33456777899999888877
Q ss_pred hch
Q 001945 535 VGR 537 (992)
Q Consensus 535 ~~~ 537 (992)
++.
T Consensus 116 f~~ 118 (142)
T cd03569 116 FRN 118 (142)
T ss_pred hCC
Confidence 754
No 293
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.53 E-value=12 Score=34.36 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=79.2
Q ss_pred HHHHHHHhc-CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC---
Q 001945 38 PALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--- 113 (992)
Q Consensus 38 ~~l~~il~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~--- 113 (992)
..++.-+.. ..++++|..+.+.+-+.+... ..+..+.+. ..++.+..+.+..-...+..+++.+.-.. |+
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~-~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~ 79 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLDAA----REEFKEKIS-DFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGS 79 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHHHh----HHHHHHHHH-HHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHH
Confidence 344444443 668899999999998885221 112222222 33333332222222233444444433211 00
Q ss_pred --CCCcchHHHHHHhhc--CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChH-HHHHHHHHHHH
Q 001945 114 --GEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR-VRIAALKAIGS 186 (992)
Q Consensus 114 --~~~~~ll~~l~~~l~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-vr~~a~~~l~~ 186 (992)
-.-..+++.+...+. +++......++.++..-+..-.-- .......++++....+.+++.. +|..|+-.|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 023567888888887 677788888888888766432210 1234556788888886546666 88888877764
No 294
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.44 E-value=5.3 Score=34.06 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 378 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.++..+...|. +.++.+-..||.=||.+++..+. ....+ -..-..++..+.++++.||..|+.++..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666666663 45788888899999999998843 22222 2456778889999999999999999998764
No 295
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.42 E-value=4.5 Score=31.02 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHhH--HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhh
Q 001945 353 YREAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l--~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 409 (992)
..+++++++|.++...... +.+ ..+++.+++... .+...+|-.|+++|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4689999999998753211 122 257888888776 788999999999999998874
No 296
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=84.37 E-value=57 Score=34.15 Aligned_cols=53 Identities=23% Similarity=0.145 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 001945 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILT 698 (992)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~ 698 (992)
..+|+-|.+.+..+.++.++. ....+..-+.++++.+-+||..|..-|+.+++
T Consensus 38 ~k~k~lasq~ip~~fk~fp~l----a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSL----ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchh----hhHHHHhhhccccccchhhHHHHHhccchhcc
Confidence 367888888888877765432 33344555566777888999999998888765
No 297
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.19 E-value=4.4 Score=34.51 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHH--HHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001945 339 FEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLE--SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 339 ~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (992)
+..+...+ .+.|...-..||.=+|.++...|... ..+. ..-..++..+.++++.||..|+.|+..+..
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33334444 34466677788888999998765431 1222 345788889999999999999999988754
No 298
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.07 E-value=12 Score=34.39 Aligned_cols=129 Identities=12% Similarity=0.051 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh--HHHHHHHHHhhcC--C
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR--D 389 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~--d 389 (992)
+.|..+.-++..+-...++..-..+-+++...+...+......++.++..+..+.++..... -+.+++.+..... .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 67888877777775555555555566666666665555577778888888888877665544 2567777777777 6
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcc-cCChH-HHHHHHHHHH
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALE-DESDE-VKEKSYYALA 444 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~-~~~~~-v~~~a~~~l~ 444 (992)
++..+..+++.+++.-|.. .....+ ....++.|-.... +++.. +|..|.-.|.
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7888999999999877655 223333 3556667777774 44444 6666655543
No 299
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=76 Score=35.12 Aligned_cols=323 Identities=15% Similarity=0.110 Sum_probs=176.0
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--H---HHhh---hhhHHHHHHHhc-ccCChHHHHHHHHHHHHHHH
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--E---IVSH---YESVLPCILNAL-EDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~---~~~~---~~~ll~~l~~~l-~~~~~~v~~~a~~~l~~l~~ 448 (992)
.++..++..+++ ...-..|..++..+...... . .... ...+++...+.- ...+..-....+..+..+.+
T Consensus 199 pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~e 276 (559)
T KOG2081|consen 199 PLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGE 276 (559)
T ss_pred HHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence 345555566653 23445555555554443211 0 1111 123334443322 22334445556677776666
Q ss_pred hhcccc---ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh--------ccCcccHHHHHHHHHHHHhccC---
Q 001945 449 DMGEEI---LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--------QAFIPYAERVLELLKIFMVLTN--- 514 (992)
Q Consensus 449 ~~~~~~---~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--------~~~~~~~~~~~~~l~~~l~~~~--- 514 (992)
.+...+ ..+.-.++..++-...+++.++-+..+..|-++....- ..|.||+.+++..+..-.....
T Consensus 277 af~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~ 356 (559)
T KOG2081|consen 277 AFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQF 356 (559)
T ss_pred HHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccc
Confidence 553211 12455667777777777888888888888887765432 2467888888887776554322
Q ss_pred ------hhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc--CCCCchhhHHHHHHHHHHHHHcccCccCchh
Q 001945 515 ------DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF--GLEFSELREYTHGFFSNIAGVLEDGFAQYLP 586 (992)
Q Consensus 515 ------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l--~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~ 586 (992)
++-...|.+..+.+..++.-+|.+ ..+..+...+ +...|+.-+++..++..++....+.=.+.+|
T Consensus 357 ~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~-------e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~p 429 (559)
T KOG2081|consen 357 DLPEEESEFFEFRLKVGDVLKDVAFIIGSD-------ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMP 429 (559)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhCcH-------HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHH
Confidence 222345666777777777777764 2222222222 3457999999999999999987776666777
Q ss_pred hhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccch
Q 001945 587 LVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPF 666 (992)
Q Consensus 587 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~ 666 (992)
.++..+.+.-. +. ..+..++..+|.+.+-.. .-..+
T Consensus 430 evl~~i~nlp~----------------------------------------Q~---~~~~ts~ll~g~~~ew~~-~~p~~ 465 (559)
T KOG2081|consen 430 EVLKLICNLPE----------------------------------------QA---PLRYTSILLLGEYSEWVE-QHPEL 465 (559)
T ss_pred HHHHHHhCCcc----------------------------------------ch---hHHHHHHHHHHHHHHHHH-hCcHH
Confidence 77776653211 00 257888888888766542 11223
Q ss_pred HHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 001945 667 LEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIV 746 (992)
Q Consensus 667 ~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 746 (992)
++.+.+.+....... ....++..+...+...+... ...+.+.+..++..+.....+ .+..- .++.++
T Consensus 466 le~v~~~~~~~~~~~--~~as~~a~~~~~i~~~c~~~-------~~~l~~~~~~l~~~l~~~~~~---~e~a~-l~~~~s 532 (559)
T KOG2081|consen 466 LEPVLRYIRQGLQLK--RLASAAALAFHRICSACRVQ-------MTCLIPSLLELIRSLDSTQIN---EEAAC-LLQGIS 532 (559)
T ss_pred HHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHhcc---HHHHH-HHHHHH
Confidence 444444444333221 24556666667777766532 112233333344433333222 23322 567777
Q ss_pred HHHHHhCCcccHHHHHHHHH
Q 001945 747 EIINDYGYMAVEPYMSRLVD 766 (992)
Q Consensus 747 ~~~~~~g~~~~~~~~~~l~~ 766 (992)
.++...+..-.+..+++++.
T Consensus 533 ~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 533 LIISNLPAHKAKIALEELCE 552 (559)
T ss_pred HHHhcCCHhhhhHHHHHHhh
Confidence 77766653333444555443
No 300
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.73 E-value=1.7 Score=29.08 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 001945 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (992)
Q Consensus 361 l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 402 (992)
++.+.+.-+..+. .+.+...+...+.|+++.||.+|..++
T Consensus 3 l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4445554333221 237888999999999999999998653
No 301
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.66 E-value=33 Score=30.81 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCC-h-H--HHHHHHHHHHHHHHhh
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES-D-E--VKEKSYYALAAFCEDM 450 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~-~-~--v~~~a~~~l~~l~~~~ 450 (992)
...+..|.+.+.++++.++..|+..+..+...+++.+...+ ..++..+...+.+.. . . |+..+...+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999987776543 557777777666443 2 2 8999999998888887
Q ss_pred c
Q 001945 451 G 451 (992)
Q Consensus 451 ~ 451 (992)
.
T Consensus 121 ~ 121 (140)
T PF00790_consen 121 K 121 (140)
T ss_dssp T
T ss_pred C
Confidence 3
No 302
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=83.54 E-value=43 Score=32.11 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccC
Q 001945 523 RATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG 580 (992)
Q Consensus 523 ~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~ 580 (992)
..+.+++.+-..+|. ...|++.+++..+.+.-++++...|+.+-.++|..+..+|++
T Consensus 19 ~vl~v~s~lf~~lg~-~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 19 EVLNVLSALFEKLGE-RSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 466777777777766 466777788877777555666789999999999999999954
No 303
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.51 E-value=1.3e+02 Score=37.51 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC---CHhHHHHHHHHHHHHHHHhhccCcc-----cHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIP-----YAER 501 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~-----~~~~ 501 (992)
.+..+||.....++-++++..++.+..--..+++.+....... ..++...++.++.-+.. +|.+ .+.-
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss----DfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS----DFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh----cchhcCChHHHHH
Confidence 4446788888899999998887654433444444444443333 34455555555544432 2322 2233
Q ss_pred HHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhc------c---------------CChH-----HHHHHHHhcc
Q 001945 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM------E---------------PILP-----PFVEAAISGF 555 (992)
Q Consensus 502 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~---------------~~~~-----~i~~~l~~~l 555 (992)
++..+..+-....|-...+ .|+..+-.+...+....+ . ..++ -++..+.++.
T Consensus 929 lidtl~~fs~QktdlNISl--tAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISL--TAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHhhhccccccH--HHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 4444444443332222222 244444433332221000 0 0011 2333444555
Q ss_pred CCCCchhhHHHHHHHHHHHHHcccCccC--chhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcccc
Q 001945 556 GLEFSELREYTHGFFSNIAGVLEDGFAQ--YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (992)
Q Consensus 556 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~--~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (992)
.++-+++|..|.+.+-++...-|..+.+ +-.-+...++..++..+. ..-++|.-... +..
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~-----q~~~ewngkei-----------qkq-- 1068 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPI-----QNVSEWNGKEI-----------QKQ-- 1068 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccc-----cchhhhcchhH-----------hhh--
Confidence 6667889999999999999999988877 444444444444432211 11111110000 000
Q ss_pred ceeeecchhhhHHHHHHHHHHHHHHhccccc-----chHHHHHHHHH----hcccCCChhHHHHHHHHHHHHHHHH
Q 001945 634 NISVRTGVLDEKAAATQALGLFALHTKSSYA-----PFLEESLKILV----RHASYFHEDVRYQAVFALKNILTAA 700 (992)
Q Consensus 634 ~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~-----~~~~~~~~~l~----~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (992)
.-...+.+++.+++-..+.+. +-+-..++.++ ++..+.+.++..+|..++..++...
T Consensus 1069 ----------wtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1069 ----------WTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred ----------hhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 012334445555544443322 12334444444 4455678899999999998877654
No 304
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.22 E-value=96 Score=35.89 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=155.4
Q ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCC------CCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhcc-----
Q 001945 2 AQSLELLLIQFL-MPDNDARRQAEDQIKRLAKD------PQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHW----- 68 (992)
Q Consensus 2 ~~~l~~ll~~~~-s~d~~~r~~A~~~l~~~~~~------p~~~~~l~~il~~~~-~~~~r~~a~~~l~~~i~~~~----- 68 (992)
++.+..+..... |.=.+.|+.|---|+.+... ...+..+++.|.++. +++.-.++.-.+...+..--
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 456667777764 34556889998888877543 235677888888754 77777777666555543220
Q ss_pred --cCCCHHHHHHH----------HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-----CCCcchHHHHHHhhcCCC
Q 001945 69 --AKLSPQLKQLV----------KQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-----GEWPDLLPFLFQFSQSEQ 131 (992)
Q Consensus 69 --~~~~~~~~~~i----------~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-----~~~~~ll~~l~~~l~~~~ 131 (992)
..-+++.-..+ ...+++.+. +.+-.||..+.+.++.+.+...++ ...|-=+..+...+.++.
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 01112222222 234445555 578999999999999998865432 134556777778888877
Q ss_pred HHHHHHHHHHHHHhhhhhhhc-----ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001945 132 EEHREVALILFSSLTETIGQT-----FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (992)
Q Consensus 132 ~~~~~~al~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 206 (992)
.-+|..++.+|..+....+.. |...+..++.++..-=.. ...-|..-++..+.++..+...+...-.-.+++|.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 788999999999998776532 223334444444322111 12246666777777777765433222112456777
Q ss_pred HHHHHHHHhhcC----CHH-HHHHHHH----HHHHHhcCC-ccchHH----HH--HHHHHHHHHHhhCCCCChHHHHHHH
Q 001945 207 ILNVSRQCLASG----EED-VAVIAFE----IFDELIESP-APLLGD----SV--KSIVHFSLEVSSSHNLEPNTRHQAI 270 (992)
Q Consensus 207 ll~~l~~~l~~~----~~~-~~~~~~~----~l~~l~~~~-~~~~~~----~l--~~li~~~~~~~~~~~~~~~~r~~a~ 270 (992)
+...+......+ .|. -+...+. ++..++.-. +..... .+ ..++..+..++-+++...+++-.++
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 776553332222 122 2233333 333333211 111100 11 1245555566656667777777776
Q ss_pred HHHHHHHH
Q 001945 271 QIISWLAK 278 (992)
Q Consensus 271 ~~l~~l~~ 278 (992)
-.....++
T Consensus 339 itvAevVR 346 (970)
T KOG0946|consen 339 ITVAEVVR 346 (970)
T ss_pred HHHHHHHH
Confidence 66665554
No 305
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=82.88 E-value=49 Score=32.31 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHH
Q 001945 17 NDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVR 96 (992)
Q Consensus 17 ~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr 96 (992)
+..|+-|.+...+.....+....+..+. .+...+.|.+|..++.... ...+++.... +-..+..-.++.+.
T Consensus 33 p~lr~lak~~~~~~~~~~~~~~l~~~L~-~~~~~E~~~la~~il~~~~----~~~~~~~~~~----~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLSEELYELADELW-ESGYREERYLALLILDKRR----KKLTEEDLEL----LEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHHHCTSHHHHHHHHHHH-CSSCHHHHHHHHHHHHHCG----GG--HHHHHH----HHHCCCCCCCHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHc-CCchHHHHHHHHHHhHHHh----hhhhHHHHHH----HHHHhccCCcchhh
Confidence 3445555555555554422233333333 3556788888888876543 1222222222 22222223567676
Q ss_pred HHH-HHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChH
Q 001945 97 RAS-ANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR 175 (992)
Q Consensus 97 ~~~-~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 175 (992)
..+ ..+++.+.... +.+.+.+.+++.|++.-.|..|+.++-..... ...+.++..+...+.+ ++..
T Consensus 104 D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d-~~~~ 170 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKD-EEYY 170 (213)
T ss_dssp HHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTG-S-HH
T ss_pred hHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCC-chHH
Confidence 666 34445544321 67889999999999988888887665433322 5667888888888888 9999
Q ss_pred HHHHHHHHHHHhhccc
Q 001945 176 VRIAALKAIGSFLEFT 191 (992)
Q Consensus 176 vr~~a~~~l~~l~~~~ 191 (992)
||.+...+|..+....
T Consensus 171 vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 171 VQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999998877664
No 306
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=81.88 E-value=2.1 Score=34.45 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
..|++++.+|+.++...+-.+.+.++.++..+....+| ...|+..+-.+++.+-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 46899999999999998888778899999998888886 66799999999998877654433
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=80.90 E-value=33 Score=30.79 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHhcC-CCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHH-HHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 457 FLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL-LKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~-l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
.-...+..+.+.+.. .++.+...++..+..++..+|..|-... ..++.- |.+++....+....++.++++.+...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 345677777777764 5788999999999999999987765433 345654 666665433333456778889998888
Q ss_pred Hhhch
Q 001945 533 ESVGR 537 (992)
Q Consensus 533 ~~~~~ 537 (992)
..++.
T Consensus 115 ~~f~~ 119 (141)
T cd03565 115 DAFRG 119 (141)
T ss_pred HHhCC
Confidence 77754
No 308
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=80.30 E-value=5.9 Score=32.28 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=47.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcC--CChhhHHHHHHHHHHHhhc
Q 001945 309 EDDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQN--ASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 309 ~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~--~~~~~r~~al~~l~~i~~~ 367 (992)
.++.|..|..|+..+..++..++ ..+.+.+...+.+.+.| ..+..+++|+.+|..+...
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999988 34567777777777664 4677899999999998543
No 309
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=80.28 E-value=1.2e+02 Score=35.01 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 235 (992)
.+..+++.|.....+ +-+.|+..++..+..+....+.. -..++-.+++ -+.+++..+...|.-.|..+..
T Consensus 301 ly~rfievLe~lS~D-~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVN----KlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKD-PLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVN----KLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHH----hcCCcchhhhhhHHHHHHHHHh
Confidence 344556666666666 88999999999999988776532 2334444444 4456666777777778888877
Q ss_pred CCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001945 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (992)
Q Consensus 236 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (992)
.+|..-.-.+..+-.+++ .+..+......|+.+|.++.-
T Consensus 371 ~HPnMK~Vvi~EIer~~F----Rpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 371 KHPNMKIVVIDEIERLAF----RPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hCCcceeehHHHHHHHHc----ccCccccceeehhhhhhhhHh
Confidence 777543333444444433 244455556667777776543
No 310
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.04 E-value=86 Score=33.22 Aligned_cols=153 Identities=10% Similarity=0.119 Sum_probs=99.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhh-cCH---HHHHHhHH---HHHHHHHhhcC-CC-C--------hhHHHHHHHH
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISE-GCA---EWMKEKLE---SVLHIVLGALR-DP-E--------QFVRGAASFA 401 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~-~~~---~~~~~~l~---~i~~~l~~~l~-d~-~--------~~vr~~a~~~ 401 (992)
+..+...+++.......+++..+..++. ..+ ..+...++ ..++.++..=. +. . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6667777888887777899999999888 322 22222222 22333322111 11 1 3899999999
Q ss_pred HHHhHhhhcHHHHhh-h--hhHHHHHHHhcccCChHHHHHHHHHHHHHH-Hhh--cc--ccccchHHHHHHHHHHhcCCC
Q 001945 402 LGQFAEYLQPEIVSH-Y--ESVLPCILNALEDESDEVKEKSYYALAAFC-EDM--GE--EILPFLDPLMGKLLAALENSP 473 (992)
Q Consensus 402 l~~l~~~~~~~~~~~-~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~--~~--~~~~~~~~l~~~l~~~l~~~~ 473 (992)
+-.+....++.+... + ..++..+++.+..+++.+-...+.++..-+ ... +. ...-+-+..+..+..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 999988876655432 2 456899999999877777777777776533 221 11 122355577888888777666
Q ss_pred H----hHHHHHHHHHHHHHHHh
Q 001945 474 R----NLQETCMSAIGSVAAAA 491 (992)
Q Consensus 474 ~----~v~~~a~~~l~~l~~~~ 491 (992)
. .+++.+-+.+-.++...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 6 78888888888887643
No 311
>PLN03205 ATR interacting protein; Provisional
Probab=79.60 E-value=84 Score=32.85 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-------hcccccHHHHHHHHHHhcC
Q 001945 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-------QTFRPHFADMQALLLKCLQ 169 (992)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-------~~~~~~~~~i~~~l~~~l~ 169 (992)
..+.+..+.+.+..+..-....++..++.++.-++..+...++.+|..+.+++- ......|-.++.+..+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 566667666665433223457789999999988888888999999988887642 1233456667776666555
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhcC------------
Q 001945 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIES------------ 236 (992)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~l~~l~~~------------ 236 (992)
..+...||..|+..+.-++...+...+...|.. ..+++-+.++++. ..-.++..++..|.-+...
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~--~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~ 459 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVS--KEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHE 459 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcc--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCc
Confidence 447888999999888777665543333333321 1234444444432 2234555555544433321
Q ss_pred ---------Cc---cchHHHHHHHHHHHHHHh---hCCCCChHHHHHHHHHHHHHHHhhH---------hHhhhcCChHH
Q 001945 237 ---------PA---PLLGDSVKSIVHFSLEVS---SSHNLEPNTRHQAIQIISWLAKYKY---------NSLKKHKLVIP 292 (992)
Q Consensus 237 ---------~~---~~~~~~l~~li~~~~~~~---~~~~~~~~~r~~a~~~l~~l~~~~~---------~~~~~~~~~~~ 292 (992)
.. ..-...+..++..+..+. .+...+.+.+..++-.+.-++.... +..+..+|+.-
T Consensus 460 e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmL 539 (652)
T PLN03205 460 EKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLML 539 (652)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHH
Confidence 00 011223344444444433 2333466778888877766664321 11122345555
Q ss_pred HHHHHhhhh
Q 001945 293 ILQVMCPLL 301 (992)
Q Consensus 293 il~~l~~~l 301 (992)
|++++..-|
T Consensus 540 ILqvLvSem 548 (652)
T PLN03205 540 ILHLLVAEI 548 (652)
T ss_pred HHHHHHHHh
Confidence 666665544
No 312
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.25 E-value=28 Score=36.19 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=66.6
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh-h-hhHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-Y-ESVLP 422 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~-~~ll~ 422 (992)
...+++|......|.-++.-.++. ...+..|.+.+++.++.|...|+..++.+...++..+..- . ..+..
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 355678888777776665544332 2567888999999999999999999999999987655431 1 23334
Q ss_pred HHHHhcc-cCChHHHHHHHHHHHHHHHhhc
Q 001945 423 CILNALE-DESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 423 ~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~ 451 (992)
.+...+. ...++|+......+....+.+.
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 4444444 3346777766666666666554
No 313
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=78.38 E-value=35 Score=29.27 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=51.9
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHH--HHHHHHh----hc--CCCChhHHHHHHHHHHH
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES--VLHIVLG----AL--RDPEQFVRGAASFALGQ 404 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 404 (992)
.....++..+...+++.+|++..-|+..+..+..+|++.+...+.. .+..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 3455677888888899999999999999999999987665544321 1222221 11 25688999998887766
Q ss_pred hH
Q 001945 405 FA 406 (992)
Q Consensus 405 l~ 406 (992)
+.
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 53
No 314
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=78.27 E-value=1.5e+02 Score=35.05 Aligned_cols=105 Identities=11% Similarity=-0.007 Sum_probs=59.0
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHhh-HhHhhh----cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHH
Q 001945 255 VSSSHNLEPNTRHQAIQIISWLAKYK-YNSLKK----HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN 329 (992)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~----~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~ 329 (992)
+..+...+-.+|-.|+-.+...+... .+.... .+-. .+-..++.++.+.+. .....-+.++.+++..
T Consensus 44 I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v-~IR~~l~~lii~s~n-------~l~iq~a~avs~IA~~ 115 (947)
T COG5657 44 INLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV-LIRDELFSLIISSSN-------QLQIQNALAVSRIARL 115 (947)
T ss_pred HHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch-HHHHHHHHHHHcccc-------hHHHHHHHHHHHHHhc
Confidence 33344446677877766655444321 110000 0011 233445555554432 3333456677777765
Q ss_pred cchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc
Q 001945 330 LAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 330 ~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (992)
--.+-||+++|-+...+++.|...-+..+..+-.+.+.
T Consensus 116 DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 116 DFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKR 153 (947)
T ss_pred cCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 54678999999999888887766666666666655553
No 315
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=78.22 E-value=2.2e+02 Score=36.92 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=66.0
Q ss_pred hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH
Q 001945 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
++.++.++......+.+++..++..|...+..+...+.... -..++..++..+.+.+..-..+|+..|..++...+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~---qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC---QQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 66888999999999999999999999999988888774322 235666666666544443446889999999887644
Q ss_pred HHHhhhhhHHHHHHHhcccCC
Q 001945 412 EIVSHYESVLPCILNALEDES 432 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~ 432 (992)
.+.++ ...+..++..+.+-+
T Consensus 507 ~l~~f-a~~l~giLD~l~~Ls 526 (1426)
T PF14631_consen 507 ELQPF-ATFLKGILDYLDNLS 526 (1426)
T ss_dssp HHHHT-HHHHHGGGGGGGG--
T ss_pred HHHHH-HHHHHHHHHHHhcCC
Confidence 44433 445556666666544
No 316
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=78.21 E-value=96 Score=32.72 Aligned_cols=185 Identities=14% Similarity=0.185 Sum_probs=111.4
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH---HHHHHHHhh-cCCHhHHHHHHHHHHHHHcccCCC--CCCcchHHH
Q 001945 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK---QSLIESITL-EHSAPVRRASANVVSIIAKYAVPA--GEWPDLLPF 122 (992)
Q Consensus 49 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~---~~ll~~l~~-~~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~ 122 (992)
+.+.|+-++.++.+.+...-..-.....+++. ..++..|.. =.++.+--.++.++...++++.-- --+++.+..
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ 168 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWK 168 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHH
Confidence 56778877777777765443321101223332 223343332 123444445555666555432100 012334445
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhh----hhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHH
Q 001945 123 LFQFSQSEQEEHREVALILFSSLTETI----GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (992)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~l~~~~----~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (992)
+++.++.++=++...|+..+..+...- .+.+..+.+.++..+.+++.+ ++--+|..+++.|+.++.-...- .
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~---~ 244 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNF---N 244 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGH---H
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHH---H
Confidence 778888888888889999999877543 345667888899988899998 89999999999999987543221 1
Q ss_pred HHHhhH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 199 KFREFI--PSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 199 ~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
....++ |.-+..+..++++....++..|+.++.-++...
T Consensus 245 vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 245 VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 111222 445666666778888889999999998887653
No 317
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=78.10 E-value=63 Score=34.28 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHh-hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhc
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 470 (992)
..++...+.+|..+..+-. .+.+ .-+.++..+..++.+. ....|..+|.-.+-..+..+.++++.++..|.+...
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 3455666666766665531 1222 2356888888888763 345577778777778888888999999998877654
Q ss_pred CCCHhHHHHHHHHHHHHHHHh
Q 001945 471 NSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 471 ~~~~~v~~~a~~~l~~l~~~~ 491 (992)
. ..+....++.++.++..-
T Consensus 287 t--~~~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 287 T--PNMAIHILEFLSSLSRLP 305 (356)
T ss_pred c--hhhHHHHHHHHHHHhhCc
Confidence 3 456667888888877643
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.03 E-value=12 Score=32.20 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc--------ChhhhHhHHHHHHHHH
Q 001945 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--------NDEDLRSRARATELLG 529 (992)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~l~ 529 (992)
+..+++.|.+.|++..+.|+..++.+|..++...+..|......-...++.+.+-. ++....+|..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56788899999999999999999999999999988888777766555666554421 2233456777777776
Q ss_pred HHH
Q 001945 530 LVA 532 (992)
Q Consensus 530 ~l~ 532 (992)
.+-
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 653
No 319
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.93 E-value=1.7e+02 Score=35.77 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC
Q 001945 354 REAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (992)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 432 (992)
|...+...........+.+...+..++. .++....|-.+.+|..|+..||.+....+..+.. ...+..+-=.|.|.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCc
Confidence 5566666555555555555556666664 3344568999999999999999999888654432 234455555678999
Q ss_pred hHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHHHh-cCCCHhHHHHHHHH
Q 001945 433 DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAAL-ENSPRNLQETCMSA 483 (992)
Q Consensus 433 ~~v~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l-~~~~~~v~~~a~~~ 483 (992)
..||..+.++|..+.+.-. ..+.-|....=..++... .+.+..||...+..
T Consensus 340 ~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 9999999999999987731 223344444444555554 33345555554443
No 320
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=77.87 E-value=9.9 Score=31.77 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHhcCC
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENS 472 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~ 472 (992)
.+.++++.++..+..++.+-.+.||..+...|.-+++.+++. +..+...+++.+..++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456778888899999999999999999999999999999987 6678888888888887654
No 321
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.81 E-value=8.1 Score=31.50 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=47.1
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHH
Q 001945 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCE 448 (992)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~ 448 (992)
++|+.+|.-|...++.++..++......-+.++..+.+.+.|++ ...+..|+.+|..+-.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999876544455678888999998775 3456678888877743
No 322
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.11 E-value=1.7e+02 Score=35.12 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH----hhccCcc-cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHH
Q 001945 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAA----AEQAFIP-YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAE 533 (992)
Q Consensus 459 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~----~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (992)
...++.+..++-++++..|..|...+..+... ..+.+.. +.+.+...+..+ +.. ......-.+-...+..+..
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~-~~~~~~~~~fW~g~~~Il~ 196 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPN-NYNPDSVIRFWSGFSLILR 196 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccC-CCChhHHHHHHHHHHHHHH
Confidence 55667777777788999999999999988764 2344543 334455555444 211 1111111224455555555
Q ss_pred hhchhhccCChHH-----HHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhh
Q 001945 534 SVGRARMEPILPP-----FVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVV 589 (992)
Q Consensus 534 ~~~~~~~~~~~~~-----i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~ 589 (992)
.+.++.+..++.. ++..++..+..+..+.....+.++..+.+.+|.+|....+.+-
T Consensus 197 ~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~ 257 (727)
T PF12726_consen 197 LLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPIS 257 (727)
T ss_pred HccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCC
Confidence 6655555444332 6677777777653555577889999999999987765554433
No 323
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=1.2e+02 Score=32.72 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh
Q 001945 136 EVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL 215 (992)
Q Consensus 136 ~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l 215 (992)
..|+..|-.+++...-.+.-.-..++..+.++|.. ++...-......+..+.-+.+...... ... +++-+.+++
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf~eNK~~M~-~~~----iveKL~klf 354 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR-SNSSLLTLVIKFLKKLSIFDENKIVME-QNG----IVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc-cchHHHHHHHHHHHHhhhhccchHHHH-hcc----HHHHHHHhc
Confidence 44566666666655433333345688889999987 667776777777776666554332111 122 333333455
Q ss_pred hcCCHHHHHHHHHHHHHHh
Q 001945 216 ASGEEDVAVIAFEIFDELI 234 (992)
Q Consensus 216 ~~~~~~~~~~~~~~l~~l~ 234 (992)
...+++.+...+..+..+.
T Consensus 355 p~~h~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLS 373 (791)
T ss_pred CCCCHHHHHHHHHHhhhcc
Confidence 5677888888777776664
No 324
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=75.42 E-value=4.9 Score=26.90 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 001945 142 FSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (992)
Q Consensus 142 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l 184 (992)
++.+.+..+..+. .+.+...+...+.| +++.||.+|+..+
T Consensus 3 l~~iv~~dp~ll~--~~~v~~~i~~rl~D-~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLD--SSDVQSAIIRRLSD-SSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccc--hHHHHHHHHHHhcC-CChHHHHHHHHHC
Confidence 4455544444332 34788899999999 9999999998753
No 325
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.40 E-value=1.6e+02 Score=36.40 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=91.8
Q ss_pred ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 001945 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (992)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~ 363 (992)
.++..+..++...........++...++..|.+++..+...-. .......+..-.+.+.++-|..|.+|.+.++.
T Consensus 776 ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaA 855 (1417)
T KOG1810|consen 776 LLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAA 855 (1417)
T ss_pred hhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHH
Confidence 4444444455444433333233344677778888776654322 33445556655667778889999999988877
Q ss_pred HhhcCH-----------------HHHHHhHHHHHHHHHhhcC----C----CChhH-HHHHHHHHHHhHhhhcHHHHhhh
Q 001945 364 ISEGCA-----------------EWMKEKLESVLHIVLGALR----D----PEQFV-RGAASFALGQFAEYLQPEIVSHY 417 (992)
Q Consensus 364 i~~~~~-----------------~~~~~~l~~i~~~l~~~l~----d----~~~~v-r~~a~~~l~~l~~~~~~~~~~~~ 417 (992)
+..... ..+-...+.+.|.+...|+ + .++.. -+..+..++++-..-...-.-.+
T Consensus 856 Li~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~~~~l 935 (1417)
T KOG1810|consen 856 LINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSATLGL 935 (1417)
T ss_pred HHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccccCCc
Confidence 664211 1122335566777775543 1 11111 12222223322221111111123
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
...+|.+.++....+..+|..|..++..+++..
T Consensus 936 s~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~ 968 (1417)
T KOG1810|consen 936 SVFVPFLQECTCQSNLKVREMASLVLLALVDAV 968 (1417)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567889999988888999999999999988774
No 326
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=75.30 E-value=73 Score=33.81 Aligned_cols=152 Identities=11% Similarity=0.140 Sum_probs=86.9
Q ss_pred CcchHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCC-------------CChHHHHHHH
Q 001945 116 WPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-------------TSNRVRIAAL 181 (992)
Q Consensus 116 ~~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-------------~~~~vr~~a~ 181 (992)
|...+..+.++++. .+|.+....+.-|.....+-.=.....++.+...+.+.+.+. ...++.....
T Consensus 139 is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~ 218 (356)
T PF03542_consen 139 ISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVF 218 (356)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHH
Confidence 45567777777764 456555554444444333322111222555555555544331 1346777788
Q ss_pred HHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCC
Q 001945 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL 261 (992)
Q Consensus 182 ~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~ 261 (992)
.+|..++.|.+.- +...- ..++..+..++.+ +....|+.+|.-.+-..|..+.+.++.++..+.++..
T Consensus 219 ~~Ls~LisYh~~~-~k~~q----d~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t---- 286 (356)
T PF03542_consen 219 PVLSALISYHSHF-SKQEQ----DEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST---- 286 (356)
T ss_pred HHHHHHHHHHHhc-CHhHH----HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc----
Confidence 8888888876421 11111 2355555555544 3455677777665555677778888888877765543
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 001945 262 EPNTRHQAIQIISWLAKY 279 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~ 279 (992)
...+-...+||+..++..
T Consensus 287 t~~~Ai~ILEFLs~L~~l 304 (356)
T PF03542_consen 287 TPNMAIHILEFLSSLSRL 304 (356)
T ss_pred chhhHHHHHHHHHHHhhC
Confidence 334556788999888853
No 327
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=74.22 E-value=2.5e+02 Score=35.54 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=48.8
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
...+..|++.|...+-.|...+|.+|.++.-..++.-.- +-..-+..|.+++.+.+..+...+..++-++..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 356788889998888888889999999998766543221 112335566666667677776666666666543
No 328
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=73.94 E-value=1.2e+02 Score=31.91 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcC----HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--HHHh
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGC----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVS 415 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~ 415 (992)
+.++...++..+--.|...+..+...- .+.+..+.+..+......+.+++...|..+++.||.+...-.. -+..
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 335567777777777777777665543 3455667888899999999999999999999999999875422 2334
Q ss_pred hh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 416 HY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 416 ~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
|. +.-+..++..|.|++..+|..|...+.-|+.+-
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 54 456778889999999999999999999998774
No 329
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=73.63 E-value=17 Score=33.21 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=46.6
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccc----cchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH-HHhhc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL----PFLDPLMGKLLAALENSPRNLQETCMSAIGSVA-AAAEQ 493 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~~~ 493 (992)
.+-|.++.+|+... ++....+.|+.++......+. .--+++.+.+...- ..-...|+..+..+. ...++
T Consensus 3 eikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~----~~e~~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 3 EIKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS----ENEPVKAFHIFICLPMPLYGE 76 (174)
T ss_pred chHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh----ccchHHHHHHHHhCCchhhhh
Confidence 35566777776543 223344445544443322221 11223333333221 122245666666665 44556
Q ss_pred cCcccHHHHHHHHHHHHhcc
Q 001945 494 AFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 494 ~~~~~~~~~~~~l~~~l~~~ 513 (992)
-+.|+++.+.|.+.+.+...
T Consensus 77 fl~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 77 FLIPFMENLLPEISKVLLPP 96 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 67788888888888888654
No 330
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=73.49 E-value=77 Score=29.52 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHH---------hhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHH
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIV---------SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~---------~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 460 (992)
+...|.-+...+..+.+..++.+. ..+ ..+.+.+++.+..+++.+-..++..+..++......++.-++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665544433 112 5677888888877778888889999999998887777766677
Q ss_pred HHHHHHH-HhcCCC--HhHHHHHHHHHHHHHH
Q 001945 461 LMGKLLA-ALENSP--RNLQETCMSAIGSVAA 489 (992)
Q Consensus 461 l~~~l~~-~l~~~~--~~v~~~a~~~l~~l~~ 489 (992)
++..+.. .+.... ...|..+++++..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7776666 444332 3577788888887775
No 331
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.21 E-value=56 Score=38.32 Aligned_cols=92 Identities=23% Similarity=0.243 Sum_probs=69.6
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (992)
..++..+-..+..+ ..|..++.+|+.++..-+..+..... .+++-+.++|..+.+..+-..|+.+|..++..++..
T Consensus 69 K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~- 145 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS- 145 (668)
T ss_pred HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-
Confidence 45777777777654 68999999999999876655433333 567788888886689999999999999999887543
Q ss_pred hHHHHHhhHHHHHHHHHHHh
Q 001945 196 EVVKFREFIPSILNVSRQCL 215 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l 215 (992)
...++|.++.+..+++
T Consensus 146 ----l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 146 ----LGPHLPDLFNIFGRLL 161 (668)
T ss_pred ----hhHHHHHHHHHHHHHH
Confidence 4667788887776655
No 332
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=73.08 E-value=5.1 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001945 379 VLHIVLGALRDPEQFVRGAASFALGQFA 406 (992)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (992)
.++.+++.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888889999999999999875
No 333
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.03 E-value=1.1e+02 Score=30.68 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=73.0
Q ss_pred cCCCCChHHHHHHHHHHHHhhc----ccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC--c---
Q 001945 168 LQDETSNRVRIAALKAIGSFLE----FTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--A--- 238 (992)
Q Consensus 168 l~~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~--~--- 238 (992)
+.+ .++.|.+.++.|..++.. +..........=..+-.+-..+...+.++++.++..|++.+..++-.. +
T Consensus 2 l~d-~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LND-EDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT--SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 456 789999988888877653 331111111111112223333444566778888888888887764311 0
Q ss_pred --------------------cc-----hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHH
Q 001945 239 --------------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (992)
Q Consensus 239 --------------------~~-----~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i 293 (992)
++ +..--..+++.++..+..+..+...-..++..|..+++..|. |+..+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~------~~~~I 154 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ------FMSRI 154 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG------GHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH------HHHHH
Confidence 11 122223477777777777665666667777788888876665 55667
Q ss_pred HHHHhhhhc
Q 001945 294 LQVMCPLLA 302 (992)
Q Consensus 294 l~~l~~~l~ 302 (992)
++.+..+-.
T Consensus 155 l~~ll~~~~ 163 (239)
T PF11935_consen 155 LPALLSFNP 163 (239)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhcCc
Confidence 777766544
No 334
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=72.92 E-value=1.4e+02 Score=32.11 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCC
Q 001945 314 APDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPE 391 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~ 391 (992)
..|..|...+..+.+..+ +.+-..++..+....++++-+.|..++..+..++-..|+.+..- .-+..+...+.|+.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhcc
Confidence 457778888888777633 44445567777777888888999999999988887766544322 22445555555544
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccC-------Ch--HHHHHHHHHHHHHHHhhccccc---cc
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDE-------SD--EVKEKSYYALAAFCEDMGEEIL---PF 457 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~-------~~--~v~~~a~~~l~~l~~~~~~~~~---~~ 457 (992)
..+....+.++-.+...- ....|+ ..-+..++.-+.|. +. ..-..+..++..++++.+.-+. +-
T Consensus 161 ~~~~~~l~~~lL~lLd~p--~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSP--RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred HhHHHHHHHHHHHHhCCc--chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 445555555555555442 222221 11123333332222 12 2345677888888888865332 11
Q ss_pred hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
+ .-++.++..+..+..++|+..++.+-.+..
T Consensus 239 ~-~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 F-RGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred c-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1 567778888888888888888777655543
No 335
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.94 E-value=50 Score=38.74 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=60.6
Q ss_pred HHHhHHHHHHHHhCCChHHHHH-HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcC
Q 001945 802 AVSDLLPAFAKSMGPHFAPIFA-KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA 876 (992)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 876 (992)
.+..+++.++...+.....+.. .+++.+++++.-+.+..+-..|+.+|.-++-..+....+|++.++.++...+.
T Consensus 87 ~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 87 QALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 4556788888877776666665 78999999887666656788999999999988888889999999999888763
No 336
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.74 E-value=32 Score=34.71 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-hhhhH
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESV 420 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~l 420 (992)
+..++.+.++.+|.+|+..+-.+.......+..+-...++.+.+.+.+..+ -.-|..++.+++... .+.+ .++.+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHHH
Confidence 456688899999999987665544433344455556778888999988777 445667788887763 2332 23445
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 421 LPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
+..++..+.++........|..+.++.+
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 5556666677765666667777777654
No 337
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=71.37 E-value=99 Score=29.69 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 001945 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAA 700 (992)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (992)
...+..++.+...++....|++.+++..+.++....+...|..+-.+++..++++
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC
Confidence 5578888899999998888999999999999887766777888888888877765
No 338
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=71.20 E-value=66 Score=27.58 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHh----c--ccCChHHHHHHHHHHHHH
Q 001945 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNA----L--EDESDEVKEKSYYALAAF 446 (992)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~----l--~~~~~~v~~~a~~~l~~l 446 (992)
...++..+...+.++++++...|+..|..+...+++.+...+ ...+..++.. . .+.+..||..+...+...
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999987766543 2233333321 1 133567888877776654
No 339
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.82 E-value=6.1 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.4
Q ss_pred hHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 001945 867 VMPLVLKELASPDAMNRRNAAFCVGELC 894 (992)
Q Consensus 867 ~~~~ll~~l~~~~~~vr~~a~~~l~~l~ 894 (992)
.++.+++.+.+++.+++..|+++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888889999999999999876
No 340
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.89 E-value=3.2e+02 Score=34.92 Aligned_cols=175 Identities=10% Similarity=0.041 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHhHhhh-cHHHHhhhhhHHHHHHHhc-ccCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHH
Q 001945 392 QFVRGAASFALGQFAEYL-QPEIVSHYESVLPCILNAL-EDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAA 468 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~-~~~~~~~~~~ll~~l~~~l-~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~ 468 (992)
+.....+..+.+.+.... ++.. .+.++..+.... .+.+.++|.++++.+..++-... .......+++...+...
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~~~l---~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~ 1577 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGHHL---QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESL 1577 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccchhh---HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 444555555555555443 2211 234455554333 34468899999988887764432 13456788999999999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHH
Q 001945 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFV 548 (992)
Q Consensus 469 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~ 548 (992)
+.+.+.++|+.|..+++-+.......+.+ .-............ .+......+...+|.++-++ |..+...++..+
T Consensus 1578 l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s-~~~i~~HgavlgLgA~Vlaf-Py~vP~wip~~L 1652 (1710)
T KOG1851|consen 1578 LNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKS-KDEIKAHGAVLGLGAIVLAF-PYVVPLWIPKPL 1652 (1710)
T ss_pred HcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhcc-hHHHHhhhhHHHHHHHHHhc-cccchhhhHHHH
Confidence 99998899999999999888765544443 11111222222222 12222334666777777565 323333444444
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 549 EAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 549 ~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
..+-. ...+...++..+-.++..+-.
T Consensus 1653 ~~Ls~-fa~e~~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1653 MNLSS-FARESAAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred HHHHh-hcCCchHHHHHHHHHHHHHHH
Confidence 33322 223334455555555554433
No 341
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.57 E-value=18 Score=34.94 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=50.5
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
+.+.....+++.-.|.+|+..+...... ....+.+++.+-..+.|++..||.+..|+|..++...++.+.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5666777777655555554444333322 23566788888888899999999999999999998875544443
No 342
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=69.06 E-value=90 Score=28.50 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=29.8
Q ss_pred HHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCC
Q 001945 802 AVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSS 836 (992)
Q Consensus 802 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 836 (992)
+...++..+...++.-|.||+..++....+.|+..
T Consensus 86 tfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~ 120 (153)
T PF08146_consen 86 TFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQF 120 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999888777654
No 343
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=68.79 E-value=2.6e+02 Score=33.46 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=27.7
Q ss_pred CchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhh
Q 001945 559 FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (992)
Q Consensus 559 ~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~ 595 (992)
+-.+|..+..++.+++..|....-.-+-.+++.+++.
T Consensus 486 ~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 486 DHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred hhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhc
Confidence 5578999999999999998865444455666776665
No 344
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=68.18 E-value=2.4e+02 Score=32.86 Aligned_cols=401 Identities=12% Similarity=0.094 Sum_probs=190.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-C---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCC
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAK-D---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~---------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~ 71 (992)
..++.+++..+.++++.++..|..+++.+.- + =+-++.|+.++. +.+.++++.|+=.||+.+...-.
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~-- 308 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKST-- 308 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCC--
Confidence 4578889999999999998888888877642 2 134666777664 67889999999999999754322
Q ss_pred CHHHHHHHH-----HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001945 72 SPQLKQLVK-----QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (992)
Q Consensus 72 ~~~~~~~i~-----~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (992)
.+.+-.|+ ..+++.|....+..+|..+..++-.+.+++. +- ......++.+|..-+
T Consensus 309 -~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-------lK-----------~~ii~~al~tLt~~v 369 (717)
T KOG1048|consen 309 -DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-------LK-----------MLIITSALSTLTDNV 369 (717)
T ss_pred -cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-------HH-----------HHHHHHHHHHHHHhh
Confidence 12222232 2566777765788888887755444333221 00 011122222222211
Q ss_pred --hhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCCh-hhHHHHHhhHHHHHHHHHHHhhc--CCHH
Q 001945 147 --ETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG-AEVVKFREFIPSILNVSRQCLAS--GEED 221 (992)
Q Consensus 147 --~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~l~~--~~~~ 221 (992)
...+-.-.+. + ..- .+..|-..+.-||.++....... ........++..++..+..+++. -+.+
T Consensus 370 I~P~Sgw~~~~~-~---------~~~-~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K 438 (717)
T KOG1048|consen 370 IIPHSGWEEEPA-P---------RKA-EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSK 438 (717)
T ss_pred cccccccCCCCc-c---------ccc-ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccch
Confidence 1100000000 0 000 11223333334443332211100 00111234555566555555543 2445
Q ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh---------HhHhhhc---C-
Q 001945 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---------YNSLKKH---K- 288 (992)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---------~~~~~~~---~- 288 (992)
....|+.++..+......-+.+... +..-.......... .. ....++..-.+.. |+.-... .
T Consensus 439 ~VENcvCilRNLSYrl~~Evp~~~~---~~~~~~~~~~~~~~-~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 439 SVENCVCILRNLSYRLEAEVPPKYR---QVLANIARLPGVGP-PA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred hHHHHHHHHhhcCchhhhhcCHhhh---hHhhcccccccCCC-cc-cccccccchhhhchhcccccCCcccccCCCCcee
Confidence 6677777776664321110111100 00000000000000 00 0111111111110 0000000 0
Q ss_pred -ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-------hhch--HHHHHHHHhhhcCCChhhHHHHH
Q 001945 289 -LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-------KHVF--PPVFEFASVSCQNASPKYREAAV 358 (992)
Q Consensus 289 -~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-------~~~~--~~~~~~l~~~l~~~~~~~r~~al 358 (992)
+-+.++..-+.+|.....+ ....++.-+|..++-..+ ..++ ...++.+.+++..++..+..++.
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~------~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a 587 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKND------NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAA 587 (717)
T ss_pred eecHHHHHHHHHHHHHhcch------HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHH
Confidence 1233444434444432211 233344444544443222 1111 23456666778889999999999
Q ss_pred HHHHHHhhcCH--HHHHHhHHHHHHHHHhhcCCCC------hhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc
Q 001945 359 TAIGIISEGCA--EWMKEKLESVLHIVLGALRDPE------QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (992)
Q Consensus 359 ~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 429 (992)
-+|..++-+.. +.+. ...++.++.+|.+.. ..+-.++|.+|..+...-.......+ ..-++.++....
T Consensus 588 ~~LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISK 664 (717)
T ss_pred HHHhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhc
Confidence 99999988753 2332 356777777776533 45666777777777643222222222 223444443333
Q ss_pred -cCChHHHHHHHHHHHHHHHh
Q 001945 430 -DESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 430 -~~~~~v~~~a~~~l~~l~~~ 449 (992)
..++++-..|+..+..+...
T Consensus 665 s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 665 SQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 33467777788888777654
No 345
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=67.84 E-value=1.5e+02 Score=32.62 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHhHHHHHHHHhC---CChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhc-HhhhHHHHHHhcCC
Q 001945 802 AVSDLLPAFAKSMG---PHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAY-VDRVMPLVLKELAS 877 (992)
Q Consensus 802 ~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~-~~~~~~~ll~~l~~ 877 (992)
+++.|+.++.+... ..... ..+...+++.+++++. .+...+.+.+...+-.+......+ -..++..+.+.+.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d--~~I~elLi~~Ls~Pei-mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLD--YPIVELLIDALSNPEI-MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccc--cchHHHHHHHhcCccc-eeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 45666666555421 11111 1455667777877543 234444444433332222222223 36788999999888
Q ss_pred CChHhHHHHHHHHHHHHhh
Q 001945 878 PDAMNRRNAAFCVGELCKN 896 (992)
Q Consensus 878 ~~~~vr~~a~~~l~~l~~~ 896 (992)
.|...|.+..|.+..+.-.
T Consensus 485 KDdaLqans~wvlrHlmyn 503 (743)
T COG5369 485 KDDALQANSEWVLRHLMYN 503 (743)
T ss_pred chhhhhhcchhhhhhhhhc
Confidence 8889999999998866543
No 346
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=67.53 E-value=2.2e+02 Score=32.08 Aligned_cols=115 Identities=12% Similarity=0.220 Sum_probs=78.5
Q ss_pred HHHhHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 372 MKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 372 ~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
+...+..+.. .++....|-++.+|..|...++.++...+..+.... .+...-=.|.|.+..||....+.+..++..-
T Consensus 268 ~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 268 IRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 3444555554 556678899999999999999988887754333221 3333444577888899999999999988766
Q ss_pred c--cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 451 G--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 451 ~--~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
+ +.+..+++.....++........-||..++..+..+-
T Consensus 346 p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 346 PHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 4 2345667777777777766544448877777666543
No 347
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.49 E-value=3e+02 Score=35.26 Aligned_cols=242 Identities=11% Similarity=0.115 Sum_probs=131.1
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HH---hhhhhHHH
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IV---SHYESVLP 422 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~---~~~~~ll~ 422 (992)
.+.+.++|+..+.++..-. ..=...++..+-..-.|.+..+-..+...++......... +. ..+.+.++
T Consensus 1047 ~s~s~~Irelv~rC~~~ni-------kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCISSNI-------KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred ccCcchhHHHHHhhhhhhh-------hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 4556677777776666111 1112344555555556777777777777776443332221 11 12233333
Q ss_pred HHHHhcccC-ChHHHHHHHHHHHHHHHhhcc---------------c-cccchHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 001945 423 CILNALEDE-SDEVKEKSYYALAAFCEDMGE---------------E-ILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (992)
Q Consensus 423 ~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~---------------~-~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 485 (992)
.+.....+. .+.....+...+...+....+ . -..+.-+++-.+.....+....+|..+++.+-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 333322211 111111222222222211110 1 11122234444555555677899999999999
Q ss_pred HHHHHhhccCcccH-HHHHHHHHHHHhccC-------hhhhHh--HHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc
Q 001945 486 SVAAAAEQAFIPYA-ERVLELLKIFMVLTN-------DEDLRS--RARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (992)
Q Consensus 486 ~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~-------~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (992)
.+....|+.|.+.+ ..++..+..++.... ..++.. ...|+..+..+-..+ .+.+...++.++..+..+.
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-~~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-FKQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 99999999988654 556666555554321 111211 123444444443333 2244466778888888888
Q ss_pred CCCCchhhHHHHHHHHHHHHHcccCccCc-hhhhhHHHHhhc
Q 001945 556 GLEFSELREYTHGFFSNIAGVLEDGFAQY-LPLVVPLAFSSC 596 (992)
Q Consensus 556 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~-l~~i~~~l~~~~ 596 (992)
+.++..+-.....|+..++...|..|... -..+...+....
T Consensus 1279 ~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1279 KQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred cCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 88888898999999999999999877643 244444444443
No 348
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=67.45 E-value=1.8e+02 Score=31.03 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=59.4
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh-ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHH--HHHhhcc
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV--AAAAEQA 494 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l--~~~~~~~ 494 (992)
+.++..+++.---.+..-...-+.-+..+++.. +..+.....++..++..++++++..|.+.|+..|..= ..-..+.
T Consensus 298 ~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n 377 (457)
T KOG2085|consen 298 ETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQN 377 (457)
T ss_pred HHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhc
Confidence 445555555543332222223445566666666 4567778889999999999999999999999888652 4444444
Q ss_pred CcccHHHHHHHHHHHH
Q 001945 495 FIPYAERVLELLKIFM 510 (992)
Q Consensus 495 ~~~~~~~~~~~l~~~l 510 (992)
-.-.++.++|.|.+..
T Consensus 378 ~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 378 AEVILPIVFPALYRNS 393 (457)
T ss_pred cceeeehhhHHHHHHH
Confidence 4445555666665544
No 349
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=66.90 E-value=44 Score=32.46 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
..+.+.....+++--.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+..|+|..++..-++.+..
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~ 187 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRD 187 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 355666777777644444444432222222 123466777888889999999999999999999886544333
No 350
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=66.67 E-value=10 Score=40.98 Aligned_cols=112 Identities=11% Similarity=0.181 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc--c
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--I 454 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~ 454 (992)
.+.+.++..|++|+.+|...+...+..+.-.+.+--..++ ..++..+.+.+...+...|..+.|.+..++-++.+. +
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 6788999999999988887777666666555533222233 567777888887777789999999999998888543 4
Q ss_pred ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 455 ~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
.+....=++.++...+++...++.+++..+..+.-
T Consensus 511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 55555557888888899999999999999988754
No 351
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=66.51 E-value=83 Score=29.32 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHH-hcccCC--hHHHHHHHHHHHHHHHh
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN-ALEDES--DEVKEKSYYALAAFCED 449 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~-~l~~~~--~~v~~~a~~~l~~l~~~ 449 (992)
..+.+.+++.+..+++.+-..++..+..+...+...+...++.+++.++. .+..++ ..-|..++.++..+++.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 46677777777766788888899999988888877666666777777776 444333 35667788888888753
No 352
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.95 E-value=1.6e+02 Score=29.88 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=80.9
Q ss_pred HHHHHHhhhcCCC-----hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhcH
Q 001945 338 VFEFASVSCQNAS-----PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 338 ~~~~l~~~l~~~~-----~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
.+|.+...+.+++ ...+ .....++.+++..+ .+.+..++....+ ..++.+.-++. ++..+.+.+.|
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~----v~~~l~~~f~P 183 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQ----VVSYLREAFFP 183 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHhCc
Confidence 3555555555555 2333 34456666665321 1234444443322 23333333332 22333333322
Q ss_pred HHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHh
Q 001945 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (992)
Q Consensus 412 ~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 491 (992)
++--.++..++..+.+..+-+|..+...|..++...+-. .|+..+++..+.++++++.. .+|++.+..+....
T Consensus 184 ---~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 184 ---DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRS 256 (262)
T ss_pred ---hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhc
Confidence 233456777888888888899999999999999877543 45888899999999876543 45666666655544
Q ss_pred h
Q 001945 492 E 492 (992)
Q Consensus 492 ~ 492 (992)
+
T Consensus 257 ~ 257 (262)
T PF14225_consen 257 G 257 (262)
T ss_pred c
Confidence 4
No 353
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=65.68 E-value=1.2e+02 Score=30.64 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHhhcCH-------HH-HHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc----HHHHhhh
Q 001945 351 PKYREAAVTAIGIISEGCA-------EW-MKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ----PEIVSHY 417 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~-------~~-~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 417 (992)
|+.-+.+...++.+++.++ .. -.+.+..+-..++..|. -.|.-+-..+..++..+++.+- +.+...-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 6655555666666664221 00 11234455555555543 3555566677777777777654 3444444
Q ss_pred hhHHHHHHHhcccC-Ch---HHHHHH--HHHHHHHHHhhccccccchHHHHHHHHHHhcCCCH--------hHHHHHHHH
Q 001945 418 ESVLPCILNALEDE-SD---EVKEKS--YYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--------NLQETCMSA 483 (992)
Q Consensus 418 ~~ll~~l~~~l~~~-~~---~v~~~a--~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--------~v~~~a~~~ 483 (992)
...+..++..+... .. -.|..| -.++..++...+..-.+.+...++.|++....+.. ..|..|+.+
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 55666667766665 22 234433 35555666655543337888888888888776432 467788888
Q ss_pred HHHHHHHh--hccCcccHHHHH
Q 001945 484 IGSVAAAA--EQAFIPYAERVL 503 (992)
Q Consensus 484 l~~l~~~~--~~~~~~~~~~~~ 503 (992)
+..+.... ++...+|+.+.+
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l 242 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDAL 242 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHH
Confidence 87776532 344555554433
No 354
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=65.53 E-value=94 Score=30.98 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=57.3
Q ss_pred chhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChH----hHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhh
Q 001945 841 DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAM----NRRNAAFCVGELCKNGGESALKYYGDILRGLYPLF 916 (992)
Q Consensus 841 ~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 916 (992)
...+|++.|+++-+ ...+|.+++.++-++.- .-.....-++.+.... ...=++.+...+
T Consensus 58 ~~~~a~~LLaq~re----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-------~~G~~~~L~~li 120 (249)
T PF06685_consen 58 LHFYALYLLAQFRE----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-------GDGDIEPLKELI 120 (249)
T ss_pred HHHHHHHHHHHHhh----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-------hCCCHHHHHHHH
Confidence 35688888887532 23466777776543321 0011222222222211 111234555667
Q ss_pred CCCCCChhhHhhHHHHHHHHHHhCCCCCC-hhhHHHHHHhh
Q 001945 917 GDSEPDDAVRDNAAGAVARMIMVNPQSIP-LNQVLPVLLKV 956 (992)
Q Consensus 917 ~~~~~~~~~~~n~~~~l~~l~~~~~~~~~-~~~~l~~~l~~ 956 (992)
.++.-++.+|.+|+++++.+...+|..=. +-+.++.++..
T Consensus 121 ~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 121 EDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 77777889999999999999998765432 55666666655
No 355
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=63.61 E-value=9.6 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHhh
Q 001945 351 PKYREAAVTAIGIISE 366 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~ 366 (992)
|.+|+.|..+|+.+..
T Consensus 1 ~~vR~~aa~aLg~~~~ 16 (30)
T smart00567 1 PLVRHEAAFALGQLGD 16 (30)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6789999999998843
No 356
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=61.93 E-value=59 Score=31.21 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=55.8
Q ss_pred HHHHHHHcc-hhchHHHHHHHHhhhcCCC-hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 001945 323 IDTMALNLA-KHVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (992)
Q Consensus 323 l~~l~~~~~-~~~~~~~~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (992)
++.++.... -..++.+++......++.+ |..|.+....+...-++. ....+++.+-..+.|.++.||.+.-|
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~------~~~~if~i~E~~l~d~e~fV~KAigW 176 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL------DLLEIFEIIELLLGDKEFFVQKAIGW 176 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHccChHHHHHHHHHH
Confidence 344554444 3566777776644444443 666666666666655542 23368888889999999999999999
Q ss_pred HHHHhHhhh
Q 001945 401 ALGQFAEYL 409 (992)
Q Consensus 401 ~l~~l~~~~ 409 (992)
+|.+++...
T Consensus 177 aLrq~~k~~ 185 (222)
T COG4912 177 ALRQIGKHS 185 (222)
T ss_pred HHHHHHhhc
Confidence 999999854
No 357
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.62 E-value=1.9e+02 Score=29.49 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--hhchHHHH
Q 001945 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVF 339 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~ 339 (992)
.+.+|..|++-+..+... +..... ++-...++.+++++.+.+. ..-|..++..++...+ +.++..++
T Consensus 16 sP~v~~~AV~~l~~lt~~-~~~~~~-~~~~~~lk~l~qL~~~~~~---------~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGR-GLQSLS-KYSEALLKDLTQLLKDLDP---------AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred ChHHHHHHHHHHhhcccc-chhhhc-cchhhhHHHHHHHccCccc---------ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 778999998877666543 221111 1334456666776665532 3345556666666554 55556677
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhc
Q 001945 340 EFASVSCQNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (992)
..+...+.++.|..-...++.+..++..
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 7788888888888888888888888764
No 358
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.55 E-value=2.4e+02 Score=30.59 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC
Q 001945 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (992)
.-..|++.|-.+++...-+..-.-..++..++++|+..+...-....++|..+.--..+...-.-..+++.|.+++...+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 44567788888888876555444567888999999887766655555555544322222222233468889999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccCccc--HHHHHHHHHHHHhc
Q 001945 474 RNLQETCMSAIGSVAAAAEQAFIPY--AERVLELLKIFMVL 512 (992)
Q Consensus 474 ~~v~~~a~~~l~~l~~~~~~~~~~~--~~~~~~~l~~~l~~ 512 (992)
++++...+..+-.+..-.+ ..|- -..++|.+..++..
T Consensus 359 ~dL~~~tl~LlfNlSFD~g--lr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSG--LRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred HHHHHHHHHHhhhcccccc--ccHHHhhccchHHHHHHhCC
Confidence 9999888877665543222 2221 12356666666643
No 359
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=60.86 E-value=70 Score=27.75 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=50.0
Q ss_pred hcHhhhHHHHHHhcC-CCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhC
Q 001945 862 AYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVN 940 (992)
Q Consensus 862 ~~~~~~~~~ll~~l~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~ 940 (992)
.+++.++|.+.+.+. ...++.|-++.--++.++.+.+ .-++++..+...+............++.|++.+...+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-----L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-----LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 367889999999999 7778898888888899887754 2334444443333322222222355788888888776
No 360
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=60.65 E-value=79 Score=28.85 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=48.9
Q ss_pred hHHHHHHHhcccC--ChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 419 SVLPCILNALEDE--SDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 419 ~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.++..+....+.+ +..+...|...|.+++.+.+....... +--++.|+..++.++..++.+++..+..+...++
T Consensus 58 ~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 58 SFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 3444444444432 467888899999998876543211111 1236678888888999999999988887766554
No 361
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.58 E-value=41 Score=29.21 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 375 KLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 375 ~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
++..++|.+..++. ...+..|.+++..++.++...+= -.+.+..++..++........ ...+..++..+++.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 56789999999999 78899999999999999987531 122334455555555554433 456777777777544
No 362
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=59.41 E-value=2.5e+02 Score=30.01 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=122.9
Q ss_pred CChhhHHHHHHHHHHHhhc---CHHHHHHhHHH-HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHH-H
Q 001945 349 ASPKYREAAVTAIGIISEG---CAEWMKEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP-C 423 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~---~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~-~ 423 (992)
+.|..-......+-.+.+. -++....++++ .+-.++..+++++|+-|.-.-..|-++...+. ....+...-++ .
T Consensus 144 ~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl-~~r~firk~iNNi 222 (457)
T KOG2085|consen 144 PAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFL-VHRPFIRKSINNI 222 (457)
T ss_pred CCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcch
Confidence 4566655555444444432 23334445543 56678888888999999887777777655431 12233322222 2
Q ss_pred HHHhcccCChH-HHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHhcCCC-HhHHHHHHHHHHHHHHHhhccCcccHH
Q 001945 424 ILNALEDESDE-VKEKSYYALAAFCEDMGEEI-LPFLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPYAE 500 (992)
Q Consensus 424 l~~~l~~~~~~-v~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~ 500 (992)
+++.+-..... --...+..+++++....-.+ ..+.--++..|+++=.... ..-..+..-|+..+. +.-....+
T Consensus 223 f~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfv----eKd~kl~~ 298 (457)
T KOG2085|consen 223 FLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFV----EKDPKLTE 298 (457)
T ss_pred hhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeee----ccCccccH
Confidence 22222222111 12234455555554443222 1223333444443311100 000001001111000 01111223
Q ss_pred HHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHH--HHHHcc
Q 001945 501 RVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSN--IAGVLE 578 (992)
Q Consensus 501 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~--i~~~~~ 578 (992)
.++..+.++...+++.. ++ .-+.-+..+...+.+..|.....++...+..++++++-.+-+.|+..|.+ +.....
T Consensus 299 ~VIrglLK~WP~tnS~K-EV--mFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~ 375 (457)
T KOG2085|consen 299 TVIRGLLKYWPKTNSSK-EV--MFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLIS 375 (457)
T ss_pred HHHHHHHHhcCCCCCcc-ee--eeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 44444555544332221 11 23455566666777888888888999999999999998898888877764 355555
Q ss_pred cCccCchhhhhHHHHhhc
Q 001945 579 DGFAQYLPLVVPLAFSSC 596 (992)
Q Consensus 579 ~~~~~~l~~i~~~l~~~~ 596 (992)
.+-.-.+|.+.|.|....
T Consensus 376 ~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 376 QNAEVILPIVFPALYRNS 393 (457)
T ss_pred hccceeeehhhHHHHHHH
Confidence 667777888888887654
No 363
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=58.47 E-value=1.5e+02 Score=27.09 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=41.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHH
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLI 84 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll 84 (992)
..+++.+--.|.+.++++.+.+... .|-.....++++... .++.+|++|...|+. .+++.......+|+
T Consensus 42 p~~L~sv~w~~~~~~~e~~~lL~~W--~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~--------~~~~~l~~ylpQLV 111 (152)
T cd00864 42 PKLLKSVNWNDDEEVSELYQLLKWW--APLSPEDALELLSPKYPDPVVRQYAVRVLES--------ASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHHccCCCHHHHHHHHHHHhcC--CCCCHHHHHHHcCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHH
Confidence 3444444334555555555544443 222233445555432 457778877765544 35666666667777
Q ss_pred HHHhhcC
Q 001945 85 ESITLEH 91 (992)
Q Consensus 85 ~~l~~~~ 91 (992)
|.|.-|+
T Consensus 112 QaLkye~ 118 (152)
T cd00864 112 QALKYEP 118 (152)
T ss_pred HHHhccc
Confidence 7777654
No 364
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.11 E-value=1.3e+02 Score=33.14 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=72.9
Q ss_pred hhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHH
Q 001945 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (992)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll 421 (992)
..+..+||..-..-|..+..--.+. .+.+..|.+.+++.++.|+.-|+..|..+.+.++..+...+ ..++
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~~~~--------~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTEGGP--------KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCccCc--------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3466778865433333332222222 26688889999999999999999999999999988766433 5778
Q ss_pred HHHHHhcccC--ChHHHHHHHHHHHHHHHhhcc
Q 001945 422 PCILNALEDE--SDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 422 ~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~ 452 (992)
+.++...... ...||..++..|...-+.++.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 8887777654 568999999999988887754
No 365
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=57.72 E-value=32 Score=32.68 Aligned_cols=57 Identities=11% Similarity=0.262 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHHHhhcCCchhhc--HhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001945 840 QDRTMVVATLAEVARDMGSPIAAY--VDRVMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (992)
Q Consensus 840 ~~r~~al~~l~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~ 896 (992)
-.|..+++++|.++++....+..+ -..++|..++.+......-+..|++-++.+.-.
T Consensus 161 yLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 161 YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 378999999999999866554444 357889999999888777888889988888743
No 366
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=57.07 E-value=2.6e+02 Score=29.59 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHh
Q 001945 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 449 (992)
.-+.-|...+.++.++++. .....+.+-+....|.+..||..|...|-.|++.
T Consensus 39 k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 3456677888888888743 2234566677788888889999999999988876
No 367
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.04 E-value=2.2e+02 Score=28.78 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHHHHHHhcCCCC
Q 001945 94 PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-RPHFADMQALLLKCLQDET 172 (992)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~i~~~l~~~l~~~~ 172 (992)
.....+|..++.++.. ...+++-..+....+..=. ..-..+..++.++-+.+ ..+..+++..+...|.+ +
T Consensus 130 ~~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr----~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n-~ 200 (262)
T PF14225_consen 130 QECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFR----DKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLEN-G 200 (262)
T ss_pred HHHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC-C
Confidence 3445677888888843 2556665555554443321 12233333333333332 34556788889999998 7
Q ss_pred ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 173 SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
.+.+|..+++.+..++...+.. ....+.++..+.+.++++.. ..|++.+..++...+
T Consensus 201 ~~w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 201 PPWLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred cHHHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 8889999999999999887533 12446666666677766543 456666666655443
No 368
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=56.85 E-value=11 Score=22.29 Aligned_cols=14 Identities=57% Similarity=0.707 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHh
Q 001945 394 VRGAASFALGQFAE 407 (992)
Q Consensus 394 vr~~a~~~l~~l~~ 407 (992)
||..|.++||.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998876
No 369
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=56.72 E-value=2.8e+02 Score=29.87 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=17.4
Q ss_pred hcCCChhhHHHHHHHHHHHhhc
Q 001945 346 CQNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~ 367 (992)
..+.|.-.|.-||.+...++.+
T Consensus 316 A~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 316 AFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hcchHHHHHHHHHHHHhhhhhh
Confidence 4556778899999999888865
No 370
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=56.30 E-value=3.4e+02 Score=31.37 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhc-CCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCC--
Q 001945 843 TMVVATLAEVARDMGSPIAAYVDRVMPLVLKEL-ASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS-- 919 (992)
Q Consensus 843 ~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-- 919 (992)
..-+..|...+..++.. ...++..+++.- ...+++++..-...++.++...+. |+..++..|...+..+
T Consensus 54 ~~~L~~L~~~Vs~Ld~~----~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~ 125 (563)
T PF05327_consen 54 IRWLKALSSCVSLLDSS----CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPS 125 (563)
T ss_dssp HHHHHHHHHGGGGG-SC----CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HH
T ss_pred HHHHHHHHHHHHHhhhH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCc
Confidence 34444455444444432 456666666652 156778888888899999888765 6777777666555421
Q ss_pred ----------CCChhhHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCcc
Q 001945 920 ----------EPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQ 983 (992)
Q Consensus 920 ----------~~~~~~~~n~~~~l~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~ 983 (992)
+......+.+-.+|.+|++..|... ..+.+.+.+.+|...........|-.-+-.+..+-|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s~--~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~ 197 (563)
T PF05327_consen 126 SIAEWPGCPPEKRREIYERVHDALQKILRLVPTSP--SFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPE 197 (563)
T ss_dssp HHHH---------------HHHHHHHHHHH-GGGH--HHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GG
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHcCCCH--HHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHH
Confidence 2234567778899999999876544 6778888899999887666655544333333344444
No 371
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=54.34 E-value=38 Score=27.45 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 001945 644 EKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (992)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (992)
.|-+++-.|+.++.+.+-.+.+|+++++..+....++ ...|+..+-+++..+-+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999998888775 556788777777777554
No 372
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=53.66 E-value=6.4e+02 Score=33.00 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=72.0
Q ss_pred HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
+..|++.++...-..+.++++.|+.-+......+...+.. -+-.+++..|+..+.++...-...|+..+..++...+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 3456677777777778888899999888888888877642 1345778888777765555445788999999998877
Q ss_pred ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHH
Q 001945 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAE 533 (992)
Q Consensus 493 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (992)
+.+.+|..-+.+.| +++..-+..+ +| +.+..++.++.
T Consensus 506 ~~l~~fa~~l~giL-D~l~~Ls~~q--iR-~lf~il~~La~ 542 (1426)
T PF14631_consen 506 SELQPFATFLKGIL-DYLDNLSLQQ--IR-KLFDILCTLAF 542 (1426)
T ss_dssp HHHHHTHHHHHGGG-GGGGG--HHH--HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhcCCHHH--HH-HHHHHHHHHhc
Confidence 77777755433322 3333322222 22 45666666653
No 373
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=53.49 E-value=1.9e+02 Score=26.93 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcC
Q 001945 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (992)
Q Consensus 15 ~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~ 91 (992)
.|.+..+++...+.+... --....++++... .++.||++|...|++ ++++.......+|+|.|+-|+
T Consensus 51 ~~~~~v~e~~~lL~~W~~--i~~~~aLeLL~~~f~d~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 51 NKRDDVAQMYQLLKRWPK--LKPEQALELLDCNFPDEHVREFAVRCLEK--------LSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred CCHHHHHHHHHHHHCCCC--CCHHHHHHHCCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHccc
Confidence 344455555554444421 1233334444432 356777777655544 355555666666677777553
No 374
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.87 E-value=3.1e+02 Score=29.09 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc-cchHHHHHHH---HHHHHHHhhCC--CCC---------hHHHHHHHHH
Q 001945 208 LNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSI---VHFSLEVSSSH--NLE---------PNTRHQAIQI 272 (992)
Q Consensus 208 l~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l---i~~~~~~~~~~--~~~---------~~~r~~a~~~ 272 (992)
+..+.+.++.........++..|.+++...+ ......+..+ ...+..++... +.+ +++|...+.|
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5666677777777777899999999988433 3333333221 11111121110 001 2899999999
Q ss_pred HHHHHHhhHhH
Q 001945 273 ISWLAKYKYNS 283 (992)
Q Consensus 273 l~~l~~~~~~~ 283 (992)
+.++.+..+..
T Consensus 138 ~Lsfl~~~~~~ 148 (330)
T PF11707_consen 138 WLSFLSSGDPE 148 (330)
T ss_pred HHHHHccCCHH
Confidence 99888765443
No 375
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=52.28 E-value=2.4e+02 Score=27.76 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHh----hcCCHhHHHHHHHHHHHHHcccCCC----CCCcchHH
Q 001945 50 PNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT----LEHSAPVRRASANVVSIIAKYAVPA----GEWPDLLP 121 (992)
Q Consensus 50 ~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~----~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~~ll~ 121 (992)
...|-.-+..|-.++..+-+.-..-.+..+-..+...|. +.+.+..|-..-.+|+.+++.+..+ -.|.+++|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 345666666666666554221111111112222333333 2356889999999999999865332 24788999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhh-hh--------hcccccHHHHH-HHHHHhcCCCCChHHHHHHHHHHHHhhc
Q 001945 122 FLFQFSQSEQEEHREVALILFSSLTET-IG--------QTFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLE 189 (992)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~-~~--------~~~~~~~~~i~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (992)
..+..+..++...+..|..+++.|.-. .| +-| .++..++ ..+.++.+. +++.+-+.+++|...+..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF-~av~~~L~kmv~~l~~~-ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERF-SAVALVLGKMVFQLVSM-PSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHH-HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Confidence 999999888888888888888887633 22 111 1223333 333344444 777777777777655543
No 376
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=52.02 E-value=1.2e+02 Score=31.90 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh--HHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhc
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
-..+..+.+.+++.++++..-|+..++.++++|.+.+..- .......+...+. ..++.|+...-..+..+++.++
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 4567777788999999999999999999999998665432 2334444555555 5688888887777777777664
No 377
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=50.85 E-value=4.3e+02 Score=30.22 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHH-HhHHHHHHHHHhhcCCCCh
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQ 392 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~~i~~~l~~~l~d~~~ 392 (992)
..+......+..+....+...|+.+=.++.+.+-+++.-...-+......++.....++- .++..+...+..+-.+.-.
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~ 322 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQ 322 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchh
Confidence 455566667777776677668888888888888888888888888888888876554443 3444444433333322222
Q ss_pred hHHHHHHHHHHHhHhhhcHH
Q 001945 393 FVRGAASFALGQFAEYLQPE 412 (992)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~ 412 (992)
...-...|+++...+.++
T Consensus 323 --~~~L~~LL~Rl~~~m~~~ 340 (559)
T PF14868_consen 323 --LINLSILLRRLFFLMAPD 340 (559)
T ss_pred --HhhHHHHHHHHHHhcCHH
Confidence 222445577776666554
No 378
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.73 E-value=2.8e+02 Score=27.74 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=78.7
Q ss_pred hhchHHHHHHHHhhh-------cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001945 332 KHVFPPVFEFASVSC-------QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l-------~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (992)
+.+.|.++..+.... .+++|....-|+..|+++-+. .-+|.+++.++-++.. .-..+|.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~----------~A~~~li~l~~~~~~~----~~~l~GD 95 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE----------RALPPLIRLFSQDDDF----LEDLFGD 95 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh----------hhHHHHHHHHcCCcch----HHHHHcc
Confidence 445566665555433 334554444555566655443 4466666666533321 1122232
Q ss_pred -hHhhhcHHHHhhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhc---cccccchHHHHHHHHHHhcCCCHhHHH
Q 001945 405 -FAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAALENSPRNLQE 478 (992)
Q Consensus 405 -l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~v~~ 478 (992)
+.+.++.-+....+.=++.+.+.+.++. .-+|..|++++..++..-+ +.+..|+..++... +...+..
T Consensus 96 ~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~---l~~~~~~--- 169 (249)
T PF06685_consen 96 FITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF---LERNPSF--- 169 (249)
T ss_pred hhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---hccCchH---
Confidence 1222222222222333455666677664 5689999999999887653 33445555555432 2222222
Q ss_pred HHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhc
Q 001945 479 TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (992)
Q Consensus 479 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 512 (992)
+++.++... +.-|..+++|.+++.+..
T Consensus 170 ----~~~~Lv~~~---~dL~~~EL~~~I~~~f~~ 196 (249)
T PF06685_consen 170 ----LWGSLVADI---CDLYPEELLPEIRKAFED 196 (249)
T ss_pred ----HHHHHHHHH---HhcCHHHhHHHHHHHHHc
Confidence 344444322 223567778888877753
No 379
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=48.71 E-value=2.2e+02 Score=26.13 Aligned_cols=94 Identities=12% Similarity=0.221 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHc---ccCCCCCCcc----hHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhhhhcccccHHHH-HHHHHH
Q 001945 97 RASANVVSIIAK---YAVPAGEWPD----LLPFLFQFSQSE--QEEHREVALILFSSLTETIGQTFRPHFADM-QALLLK 166 (992)
Q Consensus 97 ~~~~~~l~~i~~---~~~~~~~~~~----ll~~l~~~l~~~--~~~~~~~al~~l~~l~~~~~~~~~~~~~~i-~~~l~~ 166 (992)
+.++.++..+.. +.. -.|.. ++..+.+.++.+ +..+...++.+|..++...+........++ ++.+..
T Consensus 32 ~~La~~L~af~eLMeHg~--vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGI--VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCc--CchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 444555554443 322 36855 445555555433 567888999999999876554332222333 567778
Q ss_pred hcCCCCChHHHHHHHHHHHHhhcccCC
Q 001945 167 CLQDETSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 167 ~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.|+. ++++++..|+..+..+....++
T Consensus 110 hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 110 HLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 8888 8999999999998888776643
No 380
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=48.03 E-value=3.1e+02 Score=27.72 Aligned_cols=74 Identities=22% Similarity=0.394 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCC-------ccchhhHHHHHHHHHhhc--CCchhhcHhhhHHHHHHhcC
Q 001945 806 LLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP-------LQDRTMVVATLAEVARDM--GSPIAAYVDRVMPLVLKELA 876 (992)
Q Consensus 806 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~~r~~al~~l~~~~~~~--~~~~~~~~~~~~~~ll~~l~ 876 (992)
++..+..+-+..-.+.+...+..+++..+.+.. ...+..|+-+|..+++.. +....+|+...+...++.+.
T Consensus 171 ~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 171 LILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 344555554443336666777777776654332 135788999999988764 45677888888888888887
Q ss_pred CCC
Q 001945 877 SPD 879 (992)
Q Consensus 877 ~~~ 879 (992)
+++
T Consensus 251 s~~ 253 (255)
T PF10350_consen 251 SPD 253 (255)
T ss_pred Ccc
Confidence 654
No 381
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=46.52 E-value=3.1e+02 Score=27.35 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=78.2
Q ss_pred cCCCChhHHHHHHHHHHHhHhhhc------HHHH---hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc-----
Q 001945 387 LRDPEQFVRGAASFALGQFAEYLQ------PEIV---SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE----- 452 (992)
Q Consensus 387 l~d~~~~vr~~a~~~l~~l~~~~~------~~~~---~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~----- 452 (992)
++|+++.|...++.+.+.+....- +... ..+..+-..++..+.+.++.||..|.+++..++-....
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 578888888888888877655321 1112 23455566777888888899999999999998854310
Q ss_pred ----------c---------------cccchHHHHHHHHHHhcCCC--HhHHHHHHHHHHHHHHHhhccCcccHHHHHHH
Q 001945 453 ----------E---------------ILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (992)
Q Consensus 453 ----------~---------------~~~~~~~l~~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 505 (992)
. +..-...+++.|+..+.... ..+-..++.+++.++..=+ .|++.+++.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ 157 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPA 157 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Confidence 0 11123367778888887765 4455666666666665433 366777877
Q ss_pred HHHHHhc
Q 001945 506 LKIFMVL 512 (992)
Q Consensus 506 l~~~l~~ 512 (992)
+..+-..
T Consensus 158 ll~~~~~ 164 (239)
T PF11935_consen 158 LLSFNPN 164 (239)
T ss_dssp HHHHHHS
T ss_pred HHhcCcc
Confidence 7766543
No 382
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=45.53 E-value=1.1e+02 Score=26.14 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhh-HHHHHHhcCCCChHhHH
Q 001945 821 IFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRV-MPLVLKELASPDAMNRR 884 (992)
Q Consensus 821 ~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~vr~ 884 (992)
+-..+...+.+.+....+ ..+..++.++.+++++.+.....++... .+.+.......++.+|+
T Consensus 34 ~a~~iv~~i~~~i~~~~~-~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~ 97 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPP-EQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRK 97 (114)
T ss_pred HHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 334555556666655554 5789999999999999887755544433 44444444444555553
No 383
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=44.80 E-value=2.8e+02 Score=26.29 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhc
Q 001945 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (992)
Q Consensus 49 ~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~ 90 (992)
++.+|++|...|+. .+++.......+|+|.|.-|
T Consensus 89 ~~~Vr~yAV~~L~~--------~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 89 DPFVRAYAVERLES--------ASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred CHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHcc
Confidence 55666666544433 34555555555566666544
No 384
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=44.55 E-value=5.4e+02 Score=29.54 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=39.9
Q ss_pred ChhhHHHHHHHHHHHh-h-cCHHHHHHhHHHHHHHHHhhcC----CCChhHHHHHHHHHHHhHhhhc
Q 001945 350 SPKYREAAVTAIGIIS-E-GCAEWMKEKLESVLHIVLGALR----DPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~-~-~~~~~~~~~l~~i~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
+|+..++--++...++ . +....+.+.+..++..++.++. ..-...|..+++.|..++...+
T Consensus 394 nWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg 460 (661)
T KOG2256|consen 394 NWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG 460 (661)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC
Confidence 5777776666666666 3 3344555555555555555543 2456789999999999988654
No 385
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.66 E-value=4.9e+02 Score=28.79 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHh
Q 001945 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (992)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~ 298 (992)
+++.+...+.+|.-+-....-.. ..+++.++.+..-. +...|..++.-+.+.+++....-...+.-..+-..++
T Consensus 33 p~~Lr~~i~~~LiLLrNk~~i~~----~~LL~lff~l~~~~--dk~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~f 106 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNKNLIVA----EDLLELFFPLLRCG--DKNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMF 106 (616)
T ss_pred CHHHHHHHHHHHHHHhccCcCCH----HHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 56778888888877665433222 23455555554433 5566777776666655543333323222233444456
Q ss_pred hhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchH--HHHHHHHhhhcCCChhhHHHHHHHH
Q 001945 299 PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP--PVFEFASVSCQNASPKYREAAVTAI 361 (992)
Q Consensus 299 ~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~r~~al~~l 361 (992)
.+|...++ ..|..+++.+.+-....+|. .-+..+...+.+.+++++.+++..+
T Consensus 107 sml~~~d~----------~~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~Ff 161 (616)
T KOG2229|consen 107 SMLDQSDS----------TAAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFF 161 (616)
T ss_pred HHHhCCCc----------hhHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHh
Confidence 66654432 35666666666666555553 2344444446667777776666543
No 386
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=43.56 E-value=6.4e+02 Score=30.11 Aligned_cols=320 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 001945 646 AAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIF 725 (992)
Q Consensus 646 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 725 (992)
..|..+...+..++++.+..|...++..+.++++..+++++..++.++..++.... ..+....-++.+++++
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~--------d~~sy~~~yd~Fi~kf 145 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEE--------DGPSYHRNYDFFISKF 145 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcc--------cCchhhhhhHHHHHHH
Q ss_pred HHHHhhCChHH----HHHHHHHHHHHHHHHhCCccc------HHHHHHHHHHHHHHHhhhh-----hhcCCCCCCCCCCc
Q 001945 726 IRTMTEDDDKD----VVAQACTSIVEIINDYGYMAV------EPYMSRLVDATLLLLREES-----TCQQPDNDSDIEDD 790 (992)
Q Consensus 726 ~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~------~~~~~~l~~~l~~~l~~~~-----~~~~~~~~~~~~~~ 790 (992)
.+...+..+.+ ++.+-+.++..++...-...+ ..+++.+++.+...+..-. ....+....+..-.
T Consensus 146 ~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a 225 (819)
T KOG1877|consen 146 SSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAA 225 (819)
T ss_pred HHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCcccccc
Q ss_pred ccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccch-hhHHHHHHHHHh-hcCCchhhcHhhhH
Q 001945 791 DDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDR-TMVVATLAEVAR-DMGSPIAAYVDRVM 868 (992)
Q Consensus 791 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r-~~al~~l~~~~~-~~~~~~~~~~~~~~ 868 (992)
.+...+..+. +-.|+..+.+. ..+...+..++..++..+....-|... .+|+.++..++- .-+...-.++..++
T Consensus 226 ~~~~~~p~vl--a~~cl~~l~~~--A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li 301 (819)
T KOG1877|consen 226 GDKTSDPKVL--AERCLRELLGR--AKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELI 301 (819)
T ss_pred CCcccCcchh--HHHHHHHhhcc--ccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHH
Q ss_pred HHHHHhc-CCCChHhHHHHHHHHHHHHhhc--CcchhhHHHHHHHhhhhhhCCC-CCChh---------hHhhHHHHHHH
Q 001945 869 PLVLKEL-ASPDAMNRRNAAFCVGELCKNG--GESALKYYGDILRGLYPLFGDS-EPDDA---------VRDNAAGAVAR 935 (992)
Q Consensus 869 ~~ll~~l-~~~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~~l~~~-~~~~~---------~~~n~~~~l~~ 935 (992)
..+.... ....+..+-....+=+.++... +......+.+++..|..-+.-. +.+-. +-.-.=.|+-.
T Consensus 302 ~hLd~~~~~~~~~r~~~~iv~~~~~~i~~~~v~ps~l~i~n~l~rhLR~si~~s~~~~~~~~~~~~~~~~e~~~q~~li~ 381 (819)
T KOG1877|consen 302 NHLDNKKLVAKKPRLGLSIVLVSIALIAATSVGPSVLIIFNDLLRHLRKSISFSDDGNIGLETDNGNYMIEAVVQEALIQ 381 (819)
T ss_pred HHHHhhcccccCccccchhHHHHHHHHHhcccchHHHHHHHHHHHHHHhhccccccccCCchhhhhHHHHHHHHHHHHHH
Q ss_pred HHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHH
Q 001945 936 MIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLV 977 (992)
Q Consensus 936 l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~ 977 (992)
+.....+..|.-+...+.+-.|+...|..-...-.+.+...+
T Consensus 382 ~~~~~~~~~P~~q~~~vm~~~~~~v~~~sk~~~~~~~liq~~ 423 (819)
T KOG1877|consen 382 LTKKFANTLPDYQKMAVMLFIMSKVPDLSKPSILGELLIQAM 423 (819)
T ss_pred HHHhhcccCchHHHHHHHHhhcccccccCCccccHHHHHHHH
No 387
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=43.46 E-value=6.6e+02 Score=30.76 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCC
Q 001945 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 114 ~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.+|++++..+-.+. .+++.++.+.+ .+.-..+...+.+||+..-...|...++..-..+.+.+..
T Consensus 32 ~eW~DyIs~L~~L~---------k~lq~~Skf~n------IP~~~lvsrrL~~cLsP~LPaGVH~KTLEvY~yIFe~Ig~ 96 (1618)
T COG5221 32 KEWSDYISLLSSLD---------KTLQKFSKFPN------IPKKKLVSRRLNQCLSPVLPAGVHNKTLEVYSYIFERIGR 96 (1618)
T ss_pred HHHHHHHHHHHHHH---------HHHHHhcccCC------CCcHHHHHHHHHhhcCCcCCcchhhhhhhHHHHHHHHHhH
Confidence 38999987775543 23333332221 1222344566667776533445666667666666665543
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Q 001945 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFS 252 (992)
Q Consensus 194 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~ 252 (992)
......+.-+.+.+.+.... ....++..-++.+....-..+.-+++.+..++--+
T Consensus 97 eTL~~e~n~w~~Gl~pf~~~----~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isL 151 (1618)
T COG5221 97 ETLLKEFNFWTLGLFPFSAH----CSILVVSSFIDLIERYIVPLGKDVRSYCTSILISL 151 (1618)
T ss_pred HHHHhhhhhhhcchhhhhhh----hhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHh
Confidence 33333344455555553322 22344444455554444333444555555444433
No 388
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=43.25 E-value=2e+02 Score=25.10 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhh---cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh
Q 001945 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l---~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~ 386 (992)
++|.+.... +..++...- ..-...++..+...+ ...+|+...-|+..+..+..+.++.+...+..-...|-.+
T Consensus 15 d~~gp~~~~---l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l 91 (125)
T PF01417_consen 15 DPWGPPGKL---LAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIREL 91 (125)
T ss_dssp SSSS--HHH---HHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG
T ss_pred CCCCcCHHH---HHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhc
Confidence 345444433 334444332 245566777777777 6788999999999999999877665554443322222222
Q ss_pred --cC--CC-----ChhHHHHHHHHHHHh
Q 001945 387 --LR--DP-----EQFVRGAASFALGQF 405 (992)
Q Consensus 387 --l~--d~-----~~~vr~~a~~~l~~l 405 (992)
+. |+ ...||..|-..+.-+
T Consensus 92 ~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 92 QDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp GG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred ceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 11 22 134777776655443
No 389
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=43.14 E-value=3.1e+02 Score=26.28 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-CCCcchHHHHHHhhcCCCHH--HHHHHHHHHHHhhhhh
Q 001945 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GEWPDLLPFLFQFSQSEQEE--HREVALILFSSLTETI 149 (992)
Q Consensus 73 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~l~~~l~~~~~~--~~~~al~~l~~l~~~~ 149 (992)
++....+...+++... |.-..||..++.++..+.....+. ...| -.+.+...+..+... ....+-.++..++.-.
T Consensus 2 ~~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHh
Confidence 3445555556666555 678899999999999998544331 1222 335555544432210 0111222333332211
Q ss_pred hhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001945 150 GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEI 229 (992)
Q Consensus 150 ~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 229 (992)
. +..+...++.-+...... ....+...|..+|..++...... ......++..++..+.... .++.+..-.++.
T Consensus 80 ~--~~~y~~~ll~Glv~S~G~-~tesl~~~s~~AL~~~~~~~~~~--~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~t 152 (193)
T PF12612_consen 80 D--LPEYRYSLLSGLVVSAGG-LTESLVRASSAALLSYLRELSDS--PEELEQVLSDLLSILKENL--RNDRVVVPLLKT 152 (193)
T ss_pred c--cHHHHHHHHhHHHhcCCC-CchhHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHhC--CCCCeeecHHHH
Confidence 1 113344455444444455 56667777777777776532111 1122333344444433221 233444455555
Q ss_pred HHHHhc
Q 001945 230 FDELIE 235 (992)
Q Consensus 230 l~~l~~ 235 (992)
+..+..
T Consensus 153 l~~Ll~ 158 (193)
T PF12612_consen 153 LDFLLS 158 (193)
T ss_pred HHHHHh
Confidence 555544
No 390
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=42.43 E-value=2.2e+02 Score=28.56 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcC---HHHHHHhHHH-HHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhc
Q 001945 356 AAVTAIGIISEGC---AEWMKEKLES-VLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNAL 428 (992)
Q Consensus 356 ~al~~l~~i~~~~---~~~~~~~l~~-i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l 428 (992)
.|+..+..++.+. ...+..+++- +.|.+-..-+. +...+|.++.-.+|.+.+.-.+++..++ .+++|.+++.+
T Consensus 69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 4455555555532 2333444433 23444333222 4578999999999999987767777765 68999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHh
Q 001945 429 EDESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 429 ~~~~~~v~~~a~~~l~~l~~~ 449 (992)
...+.-.+..|...+..++..
T Consensus 149 e~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHHHHcc
Confidence 988777777777777777643
No 391
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=40.31 E-value=2.3e+02 Score=24.11 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHHhcCCCHhHHHHHHHH
Q 001945 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSA 483 (992)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~v~~~a~~~ 483 (992)
+...++..+.+.+....+.-+..++..+..+++++...-..++... .+.+.......++.+|......
T Consensus 34 ~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl 102 (114)
T cd03562 34 HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERL 102 (114)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456777777888777778888999999999998865433333322 4444444445566666554443
No 392
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=1.7e+02 Score=32.34 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=75.7
Q ss_pred cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHh
Q 001945 90 EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKC 167 (992)
Q Consensus 90 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~i~~~l~~~ 167 (992)
++++..--.+|+.|-. ..+.-++.+..|..-+++.++.+...||.+|..+++.+|..|...+ .++++-++..
T Consensus 16 ~pDWa~NleIcD~IN~------~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~ 89 (470)
T KOG1087|consen 16 EPDWALNLEICDLINS------TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKR 89 (470)
T ss_pred CccHHHHHHHHHHHhc------CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 5788887777777653 1124468888899999988889999999999999999998765433 3467767777
Q ss_pred cCCC-CChHHHHHHHHHHHHhhcccCC
Q 001945 168 LQDE-TSNRVRIAALKAIGSFLEFTND 193 (992)
Q Consensus 168 l~~~-~~~~vr~~a~~~l~~l~~~~~~ 193 (992)
.... .+..||..++..+-.+...+..
T Consensus 90 ~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 90 PKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHccC
Confidence 7775 6889999999999888776643
No 393
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=39.48 E-value=3.2e+02 Score=25.40 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcC
Q 001945 16 DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (992)
Q Consensus 16 d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~ 91 (992)
|....++|.+.|.+.. |--....++++... .++.||++|...|++ .+++.......+|+|+|.-|.
T Consensus 59 ~~~e~~e~~~lL~~W~--~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 59 DEQEVKQALELMPKWA--KIDIEDALELLSPYFTNPVVRKYAVSRLKL--------ASDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CHHHHHHHHHHHhcCC--CCCHHHHHHHcCccCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHhcc
Confidence 4455556666555543 22234445555432 467788888766654 356666666777778887654
No 394
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=38.19 E-value=92 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHccc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~ 110 (992)
...+++|+.+++.|.. .++..|..+..+|+.+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES-REPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCCC
Confidence 3568899999999996 55888888889999887643
No 395
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=35.48 E-value=2.5e+02 Score=25.05 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=52.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc---ccc
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE---ILP 456 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~---~~~ 456 (992)
+..+++.|+-....++.+|..+|.. ..+ -+.+.+.++..+.+++-..|.....++..+++.+... -.+
T Consensus 10 F~~~L~~L~aS~qSi~kaa~fAlk~--~~~-------~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 10 FTQLLRRLNASQQSIQKAAQFALKN--RDM-------EEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHc--ccc-------HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 3444555665566677777777654 222 2457788888888888888999999999999877432 346
Q ss_pred chHHHHHHHHHH
Q 001945 457 FLDPLMGKLLAA 468 (992)
Q Consensus 457 ~~~~l~~~l~~~ 468 (992)
|...+-..|..+
T Consensus 81 Yv~~l~~dL~~I 92 (139)
T PF12243_consen 81 YVSMLQRDLPRI 92 (139)
T ss_pred hHHHHHHHHHHH
Confidence 666554444444
No 396
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=35.26 E-value=1.8e+02 Score=24.26 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHH--HHHHHHHhhc--CCCChhHHHHHHHHHHHhHhhhc
Q 001945 355 EAAVTAIGIISEGCAEWMKEKLE--SVLHIVLGAL--RDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 355 ~~al~~l~~i~~~~~~~~~~~l~--~i~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
...+..++.++..++.. .+.+. .-+|.++++. +|.+|.+|..|.+|+..+++...
T Consensus 4 ~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 34455566666554322 11111 2367777764 46899999999999999999874
No 397
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=33.36 E-value=6.4e+02 Score=27.10 Aligned_cols=204 Identities=15% Similarity=0.142 Sum_probs=95.4
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh--hhhhHHHHHHHhc------c-c--CChHHHHHHHHH
Q 001945 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNAL------E-D--ESDEVKEKSYYA 442 (992)
Q Consensus 374 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l------~-~--~~~~v~~~a~~~ 442 (992)
.+++++...+-+.+...+........+++|.+...+++-+.. .-..+++.++..+ + + ..+.+-...-+.
T Consensus 65 ~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~ 144 (373)
T PF14911_consen 65 EYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKS 144 (373)
T ss_pred HHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHH
Confidence 445556666666665567788888889999988887653211 1112222222221 1 1 123444444455
Q ss_pred HHHHHHhhc---cccccchHHHHHHH----HHHhcC-------------------CCHhHHHHHHHHHHHHHHHh-hccC
Q 001945 443 LAAFCEDMG---EEILPFLDPLMGKL----LAALEN-------------------SPRNLQETCMSAIGSVAAAA-EQAF 495 (992)
Q Consensus 443 l~~l~~~~~---~~~~~~~~~l~~~l----~~~l~~-------------------~~~~v~~~a~~~l~~l~~~~-~~~~ 495 (992)
+..+++..+ ..-.+|+...+..+ ...+.- .+...+..+++.+..---.. +..-
T Consensus 145 lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p 224 (373)
T PF14911_consen 145 LPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAP 224 (373)
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCC
Confidence 555555442 12234444333333 222211 12233444444333222122 2345
Q ss_pred cccHHHHHHHHHHHHhcc--Chhhh---HhHHHHHHHHHHHHHhhc-hhhccCChHHHHHHHHhccC-CCCchhhHHHHH
Q 001945 496 IPYAERVLELLKIFMVLT--NDEDL---RSRARATELLGLVAESVG-RARMEPILPPFVEAAISGFG-LEFSELREYTHG 568 (992)
Q Consensus 496 ~~~~~~~~~~l~~~l~~~--~~~~~---~~~~~~~~~l~~l~~~~~-~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~~~~ 568 (992)
.|....++..+.+++... .+... .++.-....+..+. .++ ........-++++.+++..+ ..+...++....
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~-~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s 303 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLM-LVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTS 303 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHh-hcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHH
Confidence 567777777777777651 11111 11211111222211 223 22334445566666666555 334556666666
Q ss_pred HHHHHHHHcc
Q 001945 569 FFSNIAGVLE 578 (992)
Q Consensus 569 ~~~~i~~~~~ 578 (992)
++..+++...
T Consensus 304 ~lrsfvqk~l 313 (373)
T PF14911_consen 304 VLRSFVQKYL 313 (373)
T ss_pred HHHHHHHHHh
Confidence 6666665443
No 398
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.42 E-value=3.7e+02 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHh
Q 001945 157 FADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (992)
Q Consensus 157 ~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (992)
.+++...+..+|.+ ++++|+..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~-~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSS-RDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 45677888899999 9999999999998774
No 399
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=32.19 E-value=2.6e+02 Score=26.51 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 001945 72 SPQLKQLVKQSLIESITLE 90 (992)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~~ 90 (992)
+++.......+|+|+|.-|
T Consensus 105 ~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 105 SDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp -HHHHHHHHHHHHHHGGGS
T ss_pred CchHHHHHHHHHHHHheec
Confidence 4444444444555555443
No 400
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=32.09 E-value=2.6e+02 Score=27.35 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=61.6
Q ss_pred HHHHhcccCChHHHHHHHHHHHHHHHhhccc-cccchHHHHHHHHHHhcCC-CHhHHHHHHHHHHHHHHHhhc--cCccc
Q 001945 423 CILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQ--AFIPY 498 (992)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~--~~~~~ 498 (992)
.+.+.|.+.++.+|..|...+..++...... -..-+..+...|.-++=.. .+-+|++...-++.+....+. ....|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 3567788888999999999999999876543 2345567777777776543 477899999999999887763 34455
Q ss_pred HHHHHHHHHH
Q 001945 499 AERVLELLKI 508 (992)
Q Consensus 499 ~~~~~~~l~~ 508 (992)
+..++..+..
T Consensus 84 ~~~f~~tm~r 93 (217)
T PF05997_consen 84 LKAFWETMRR 93 (217)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 401
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=7.8e+02 Score=27.56 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
|+.+..+.+++.+++.+.+.+|+..++....+ .+-++++..+.+.+.+.+..+...++.++.--.-+++..-..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsG------t~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD 522 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSG------TQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGD 522 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcC------CcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCch
Q ss_pred hhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001945 416 HYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (992)
Q Consensus 416 ~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 494 (992)
....++..++..-. ..+..--.-..-+|..+...-.+......+.++. -..--....+.+-..+...|..
T Consensus 523 ~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~a---------Ieg~ls~~~eiLv~~c~Y~GTG 593 (881)
T COG5110 523 LTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMA---------IEGALSKHEEILVKGCQYVGTG 593 (881)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHH---------hcchhhhhHHHHHhhceecccC
Q ss_pred CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHH
Q 001945 495 FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (992)
Q Consensus 495 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~ 571 (992)
=.-..+.++. ++.-.....-++...-...+..++.-.-+.|.+.-...+-+.+..++. .+++.+|...--|+|
T Consensus 594 dvl~Iq~lLh-v~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mh---yg~~hiR~~~PLa~g 666 (881)
T COG5110 594 DVLVIQSLLH-VKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMH---YGSSHIRSVLPLAYG 666 (881)
T ss_pred cHHHHHHHHh-ccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhh---cCcHHHHHHHHHHHh
No 402
>PF14961 BROMI: Broad-minded protein
Probab=31.19 E-value=1.1e+03 Score=29.85 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
+=++.+..-+..+...+||.+|++.|.+.-... +. -.+.++.+.+.+...+.++|+.+...+++.........|
T Consensus 161 e~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SD-----Vl-s~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 161 EQLQLIADKLDPGQPKEVRLEALQILCSAPPSD-----VL-SCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChhh-----cc-ccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 334667777776577889999999987653221 11 245668888888889999999999999999999888876
Q ss_pred cch-HHHHHHHHHHHHHHhhC-----CC----CC---hH-HH-HHHHHHHHHHHHhhHhHhhh--cCChHHHHHHHhhhh
Q 001945 239 PLL-GDSVKSIVHFSLEVSSS-----HN----LE---PN-TR-HQAIQIISWLAKYKYNSLKK--HKLVIPILQVMCPLL 301 (992)
Q Consensus 239 ~~~-~~~l~~li~~~~~~~~~-----~~----~~---~~-~r-~~a~~~l~~l~~~~~~~~~~--~~~~~~il~~l~~~l 301 (992)
..+ ......++..+-..+.. +. ++ +. .| ...+.++...-+..|+...+ .++++.+++..+.+|
T Consensus 235 l~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLL 314 (1296)
T PF14961_consen 235 LNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLL 314 (1296)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHh
Confidence 655 33444555444322211 11 11 01 11 12344455554444543222 247888888888877
Q ss_pred cc
Q 001945 302 AE 303 (992)
Q Consensus 302 ~~ 303 (992)
+.
T Consensus 315 s~ 316 (1296)
T PF14961_consen 315 ST 316 (1296)
T ss_pred cc
Confidence 65
No 403
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.78 E-value=8.5e+02 Score=27.77 Aligned_cols=153 Identities=10% Similarity=0.009 Sum_probs=73.0
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhh-hccCCCCCCCCCCchH
Q 001945 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL-LAESNEAGEDDDLAPD 316 (992)
Q Consensus 238 ~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~-l~~~~~~~~d~~~~~~ 316 (992)
+..+...+.++...++ +..-.+.++.+|..+..-+...+...|..+.+..++.. ..| |.+. ...+|
T Consensus 265 ~sl~~d~i~dicdsvf-vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry-----~GW~LSDn-------~~~vR 331 (740)
T COG5537 265 PSLIRDEIKDICDSVF-VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRY-----NGWSLSDN-------HEGVR 331 (740)
T ss_pred chHHHHHHHHHHHHHH-hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccc-----cccccccc-------hHHHH
Confidence 3344555555544332 11223567888888887777666666655443211100 111 1211 22567
Q ss_pred HHHHHHHHHHHHHcc-h----hchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC
Q 001945 317 RAAAEVIDTMALNLA-K----HVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (992)
Q Consensus 317 ~~a~~~l~~l~~~~~-~----~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (992)
......+..++...+ . ..+..+...+.+.+ .+.+- +|-+++..+..+..-.. +. ..-+..+..++-|.
T Consensus 332 l~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~--L~---~SeIlIvsscmlDi 405 (740)
T COG5537 332 LLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV--LS---SSEILIVSSCMLDI 405 (740)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc--cc---hhHHHHHHHHHhcC
Confidence 777777777776665 2 23333333443333 23333 67777666665544210 00 01122333344455
Q ss_pred ChhHHHHHHHHHHHhHhhh
Q 001945 391 EQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~ 409 (992)
.|.-|......+..+|+..
T Consensus 406 ~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 406 IPDSRENIVESVESICKID 424 (740)
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 5554444444455555444
No 404
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=30.70 E-value=8.8e+02 Score=27.93 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 001945 682 HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYM 761 (992)
Q Consensus 682 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 761 (992)
+.+++.+.++.+..|+.......... .+-..-.+.+..+.+.+.+.+..... ...++..+..++....+..+....
T Consensus 144 ~~~ik~A~~~~l~~lLlPvA~~~~~e-vn~P~W~~~v~~i~~~~~~~~~K~kh---w~~afPL~t~lLCvS~~e~F~~~W 219 (552)
T PF14222_consen 144 KSDIKHAYCEVLVELLLPVAATATAE-VNHPKWKEAVETIYPRAAKMMSKPKH---WNVAFPLVTTLLCVSPKEFFLSNW 219 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccc-ccccHHHHHHHHHHHHHHHHHhCcch---hhhHHHHHHHHHhcCcHHHHHHHH
Confidence 55689999999988888765433222 12224455666666666666544222 223455555555544434444444
Q ss_pred H-HHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHH-HHhCCChHHHHHHHHHHHHHhhcCC-CC
Q 001945 762 S-RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFA-KSMGPHFAPIFAKLFDPLMKFAKSS-RP 838 (992)
Q Consensus 762 ~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~l~~~l~~~l~~~-~~ 838 (992)
. .++..+...++++ ..+...+.++..++.... ...++.......++-+.+--.+... ..
T Consensus 220 ~~~~i~~~~~klKdk------------------~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~ 281 (552)
T PF14222_consen 220 LPSLIESLISKLKDK------------------ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKG 281 (552)
T ss_pred HHHHHHHHHhhcCCh------------------hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCc
Confidence 4 3555544444433 234456667777777777 4444544444443333332222221 12
Q ss_pred ccchh-hHHHHHHHHHhhcCCchhhcH-hhhHHHHHHhcC------CCChHhHHHHHHHHHHHHhh
Q 001945 839 LQDRT-MVVATLAEVARDMGSPIAAYV-DRVMPLVLKELA------SPDAMNRRNAAFCVGELCKN 896 (992)
Q Consensus 839 ~~~r~-~al~~l~~~~~~~~~~~~~~~-~~~~~~ll~~l~------~~~~~vr~~a~~~l~~l~~~ 896 (992)
+-.+. .-+..+.++++..|..-..|. .+++=.+++.=. .-+++----++.++-.++..
T Consensus 282 ~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~ 347 (552)
T PF14222_consen 282 WIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSD 347 (552)
T ss_pred ccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHh
Confidence 22233 556677777777776544554 554444444321 22355444555555555443
No 405
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=30.69 E-value=1.6e+02 Score=22.86 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHh
Q 001945 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~ 449 (992)
.++|+|++|.++..- .-.+++ ..+++.+++... .+...+|-.|..+|+-+...
T Consensus 4 lKaaLWaighIgss~--~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP--LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcCh--HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 568999999998752 112333 368888888766 55688999999999887654
No 406
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=30.26 E-value=2e+02 Score=26.78 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=42.8
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
|..+|.++..+.-.++.....+...+..... ....+.++++.... +++.||..|++++.++-.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~-------i~~~~aLeLL~~~f---~d~~VR~yAV~~L~~~sd------- 100 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPK-------LKPEQALELLDCNF---PDEHVREFAVRCLEKLSD------- 100 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCC-------CCHHHHHHHCCCcC---CCHHHHHHHHHHHHhCCH-------
Confidence 4556666655554444444444444443321 11223333333222 468899999999875321
Q ss_pred HHHHHhhHHHHHHHHH
Q 001945 197 VVKFREFIPSILNVSR 212 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~ 212 (992)
..+..++|++++++.
T Consensus 101 -~eL~~yL~QLVQaLK 115 (171)
T cd00872 101 -DELLQYLLQLVQVLK 115 (171)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 125678899988774
No 407
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=29.91 E-value=9.8e+02 Score=28.19 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH----HHHHHHHHHH
Q 001945 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE----DVAVIAFEIF 230 (992)
Q Consensus 155 ~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~----~~~~~~~~~l 230 (992)
.++.++.+++ .. +++++-..+.+.+..+---..........-.+....+..++.++...+. +....+...|
T Consensus 310 ~~L~~i~~lL----~~-~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL 384 (696)
T PF14838_consen 310 SHLPDIAQLL----LH-SDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLL 384 (696)
T ss_pred HHHHHHHHHH----cC-CChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 3444444444 55 7888888887777654322211111222223334455555555554322 2234555566
Q ss_pred HHHhcCCccchHHHHHHHHHH
Q 001945 231 DELIESPAPLLGDSVKSIVHF 251 (992)
Q Consensus 231 ~~l~~~~~~~~~~~l~~li~~ 251 (992)
..++...+.-....+..+++.
T Consensus 385 ~~l~~~s~~a~~~vLr~LlE~ 405 (696)
T PF14838_consen 385 SRLCSYSPAARKAVLRELLEG 405 (696)
T ss_pred HHHHccCchHHHHHHHHHHHH
Confidence 666655444444444444443
No 408
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=29.74 E-value=7.3e+02 Score=26.67 Aligned_cols=44 Identities=5% Similarity=-0.014 Sum_probs=25.9
Q ss_pred ccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhh
Q 001945 661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIF 704 (992)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 704 (992)
.....|+.++..-+-+.+...+.+.......+++.+++.+..++
T Consensus 61 ~k~~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~ll 104 (373)
T PF14911_consen 61 TKLLEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLL 104 (373)
T ss_pred HHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhh
Confidence 34455666666555555444455566666677777777665543
No 409
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.65 E-value=5.1e+02 Score=25.43 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCCh
Q 001945 844 MVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDD 923 (992)
Q Consensus 844 ~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 923 (992)
.+.++|..+++.+++.+.++ .+.+.++...+..+.+.|..+ +-.++...|+.-...+..++..|..+...++.+.
T Consensus 74 ~va~lLK~flReLPePLlt~--~l~~~fi~~~~~~~~~~~~~~---l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 148 (220)
T cd04375 74 DVADMLKQYFRDLPEPLLTN--KLSETFIAIFQYVPKEQRLEA---VQCAILLLPDENREVLQTLLYFLSDVAANSQENQ 148 (220)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 45677777788887765553 344444444443344455444 3344455554222234444555545555556677
Q ss_pred hhHhhHHHHHHHHHHhCCCCCChhhHH-HHHH-----hhCCCCCcHHhhHHHHHHHHHHHhhcC
Q 001945 924 AVRDNAAGAVARMIMVNPQSIPLNQVL-PVLL-----KVLPLKEDFEESMAVYNCISTLVLSSN 981 (992)
Q Consensus 924 ~~~~n~~~~l~~l~~~~~~~~~~~~~l-~~~l-----~~lp~~~d~~e~~~~~~~l~~l~~~~~ 981 (992)
+...|...++|=-+...+..- .+.+. +.|. ...|-..+.+|...+...+..||+++.
T Consensus 149 M~~~NLAivfaP~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~ 211 (220)
T cd04375 149 MTATNLAVCLAPSLFHLNTSR-RENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECN 211 (220)
T ss_pred CCHHHHHHHHhhhhcCCCCCC-cccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888877555432211 01111 1222 234545566788888888888887654
No 410
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=29.59 E-value=3.2e+02 Score=24.16 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
.++..+...+..++....+-++-++..++-.....---.-..-+|.++.+++++...+-..|+.++..++-.-.....+.
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el 137 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL 137 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh
Q ss_pred h-hhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 417 ~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
+ +.++..+...-...+.+.|.-|-.++..++
T Consensus 138 l~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 138 LSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
No 411
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.71 E-value=1.3e+03 Score=29.27 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc
Q 001945 841 DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG 897 (992)
Q Consensus 841 ~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~ 897 (992)
....|+-.|++++-.......+++|.++..++-.+++..+-|++.|-..|-.++...
T Consensus 932 ~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l 988 (1120)
T PF14228_consen 932 RGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSL 988 (1120)
T ss_pred HHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHH
Confidence 356899999998866666788899999999999999999999999999999987653
No 412
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.15 E-value=4.4e+02 Score=24.25 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
++++..+.+.+.............+|..++...+-.+.++...+...+ ..+.. -..++...-+.++.-++...
T Consensus 54 ~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~l-d~l~~-lp~~~a~~ll~Al~PLi~~s----- 126 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELL-DYLSF-LPGDVAIGLLRALLPLIKFS----- 126 (158)
T ss_dssp HHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGG-GGTTT-S-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHhcC-----
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001945 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~ 232 (992)
..+-..++-.+.+.+-+.+.+.|..|..-+.+
T Consensus 127 ----~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 127 ----PSLRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp ----HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHccccHHHHHHHHHHhcC
No 413
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=27.58 E-value=2.1e+02 Score=23.91 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhc--ccCChHHHHHHHHHHHHHHHhhcc
Q 001945 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNAL--EDESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l--~~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
|...+..|+.++-.. +..++.+ ..-+|.+++.. ++.+|-+|+.|..++..+++..++
T Consensus 3 K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 555667777777554 2333322 12367777654 456799999999999999987653
No 414
>PF14961 BROMI: Broad-minded protein
Probab=27.52 E-value=1.9e+02 Score=35.70 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccC-CCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAV-PAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~ 153 (992)
+.+++.|..+.+..||..+.+.+..+--.+. ....|+.+-..+...+.++++.....+++.....+...+-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 4566666667889999999998887543332 235899999999999999999999999999999887766443
No 415
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=27.49 E-value=9e+02 Score=26.98 Aligned_cols=318 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhcccccHHHHHHHHHHhc---------CCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHH
Q 001945 138 ALILFSSLTETIGQTFRPHFADMQALLLKCL---------QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (992)
Q Consensus 138 al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l---------~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll 208 (992)
+|..|..+...-...-.-..++-+..+.+.. ....++.+...|++||.+++-..+.....-.-....+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHHhcCCccchHHHHHH------HHHHHHHHhhCCCCChHH-----------HHHHH
Q 001945 209 NVSRQCLAS-GEEDVAVIAFEIFDELIESPAPLLGDSVKS------IVHFSLEVSSSHNLEPNT-----------RHQAI 270 (992)
Q Consensus 209 ~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~------li~~~~~~~~~~~~~~~~-----------r~~a~ 270 (992)
..+...... .+.+...-..+.+.-+....+......+.. +...+-..++........ -..++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Q ss_pred HHHHHHHHhhHhHh--hhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC
Q 001945 271 QIISWLAKYKYNSL--KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN 348 (992)
Q Consensus 271 ~~l~~l~~~~~~~~--~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~ 348 (992)
.++..+....+... ...+.+..++..+...+ ........-..+...+..+|..+--.....++..-...=......
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l--~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL--PPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHh--ccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Q ss_pred CChhhHHHHHHHHHH-HhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHh
Q 001945 349 ASPKYREAAVTAIGI-ISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNA 427 (992)
Q Consensus 349 ~~~~~r~~al~~l~~-i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 427 (992)
.+-..-...+..|.. +.......+...+..++..+.+........=+..-.+.|=..-+.-.+ .+.-..+-..|++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~--~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKP--PEKGDTLRSRLLRL 316 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccC--CCCCcchHHHHHHH
Q ss_pred cccCChHHHHHHHHHHHHHHHhhccccccchH
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 459 (992)
+..+.+.++..+...+-.+++.-...+..|..
T Consensus 317 mt~~~~~~k~~vaellf~Lc~~d~~~~v~~~G 348 (446)
T PF10165_consen 317 MTSPDPQLKDAVAELLFVLCKEDASRFVKYVG 348 (446)
T ss_pred hCCCCchHHHHHHHHHHHHHhhhHHHHHHHcC
No 416
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=26.00 E-value=1.7e+02 Score=20.19 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHccc
Q 001945 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (992)
Q Consensus 76 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~ 110 (992)
.+++|+.+++.|.. .+.. |.++.-+++.+....
T Consensus 4 ~eYLKNVll~fl~~-~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 4 FEYLKNVLLQFLTL-RESE-RETLLKVISTVLQLS 36 (46)
T ss_pred HHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHhCCC
Confidence 57899999999996 4444 888888888887643
No 417
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=25.04 E-value=7.4e+02 Score=25.15 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=66.1
Q ss_pred hcCCChhhHHHHHHHHHHHhhc--CHHHHHHhHH-HHHHHHHhhcCCC---ChhHHHHHHHHHHHhHhhhcHHH-H-hhh
Q 001945 346 CQNASPKYREAAVTAIGIISEG--CAEWMKEKLE-SVLHIVLGALRDP---EQFVRGAASFALGQFAEYLQPEI-V-SHY 417 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~-~-~~~ 417 (992)
..+.....+..++..+..+... ....+..+.. .++..+....... +..+|.++...+-.++-.....- . +..
T Consensus 119 ~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 119 SSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp TTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred cCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 3345566777777777777664 2344555555 5666666666554 88999999999988877653221 1 122
Q ss_pred hhHHHHHHHhccc--CChHHHHHHHHHHHHHH
Q 001945 418 ESVLPCILNALED--ESDEVKEKSYYALAAFC 447 (992)
Q Consensus 418 ~~ll~~l~~~l~~--~~~~v~~~a~~~l~~l~ 447 (992)
..++..+...+.. .++++..+++-++++++
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 2355666653332 46788899999999998
No 418
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.83 E-value=3.2e+02 Score=26.55 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCCh
Q 001945 844 MVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDD 923 (992)
Q Consensus 844 ~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 923 (992)
..-++|-.+++.+++.+.++ .+.+.++........+-++.....+-.++...|..-...+..++..|..+...++.+.
T Consensus 75 ~vA~lLK~fLReLPePLip~--~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~Nk 152 (207)
T cd04379 75 VITGVLKDYLRELPEPLITP--QLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNK 152 (207)
T ss_pred HHHHHHHHHHHhCCCccCCH--HHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccC
Confidence 45666777777777766553 4445555544432222222222334445555554222223344445545555566778
Q ss_pred hhHhhHHHHHHHHHHhCCC
Q 001945 924 AVRDNAAGAVARMIMVNPQ 942 (992)
Q Consensus 924 ~~~~n~~~~l~~l~~~~~~ 942 (992)
+...|.+.++|-.+...++
T Consensus 153 Mt~~NLAivf~P~Ll~~~~ 171 (207)
T cd04379 153 MTPQNLAVCFGPVLMFCSQ 171 (207)
T ss_pred CChHHhHHhhccccCCCCc
Confidence 8888888888876665544
No 419
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=24.64 E-value=8.3e+02 Score=25.60 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred CChhhHHHHHHHHHHHhhcCHHHHHHhHH----------------HHHHHHHhhcC---CCChhHHHHHHHHHHHhHhhh
Q 001945 349 ASPKYREAAVTAIGIISEGCAEWMKEKLE----------------SVLHIVLGALR---DPEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l~----------------~i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~ 409 (992)
.....|.||+.++.....+..+.-...+. .++..++. .. ..+|.--+-|+.++..+...-
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il~hll~dn 128 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLD-YDSDLSLDPYRCWFAAVILMHLLRDN 128 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT-------SS-HHHHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHH-hhccccCCHHHHHHHHHHHHHHHhcC
Confidence 36789999999998888754332211111 23333332 11 234545555666666665533
Q ss_pred cHH------H-----------HhhhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchH--HHHHHHHHHh
Q 001945 410 QPE------I-----------VSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAAL 469 (992)
Q Consensus 410 ~~~------~-----------~~~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l 469 (992)
... + ...++.+...+...+. +.+++++..-+..|...+-.++..+..++. .-++.|+...
T Consensus 129 ~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 129 PEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 111 0 0112233333333344 445777777777777776666544433332 1333333332
Q ss_pred ---cCCCHhHHHHHHHHHHHHH
Q 001945 470 ---ENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 470 ---~~~~~~v~~~a~~~l~~l~ 488 (992)
.+.+..++.-+.-.+|.+.
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHH
Confidence 2234445555444444443
No 420
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.09 E-value=6.3e+02 Score=24.02 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=62.8
Q ss_pred CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCC
Q 001945 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (992)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 170 (992)
.++.+...+|..+..-.....+ .| +.+..++.+++.-.+..|..++...... ....+.++..+...+.+
T Consensus 84 ~~W~~~D~~~~~~~~~~~~~~~--~~----~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d 152 (197)
T cd06561 84 DNWDLVDSLCANLLGKLLYAEP--EL----DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHD 152 (197)
T ss_pred chHHHHHHHHHHHHHHHHhcCc--ch----HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCC
Confidence 4566655555544433322222 23 8888999999988888887776655433 34577888899888888
Q ss_pred CCChHHHHHHHHHHHHhhccc
Q 001945 171 ETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 171 ~~~~~vr~~a~~~l~~l~~~~ 191 (992)
.+..|+.+...+|..+....
T Consensus 153 -~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 153 -EEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred -HHHHHHHHHHHHHHHHHhhC
Confidence 89999999999998877764
No 421
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.93 E-value=3.3e+02 Score=25.33 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHH
Q 001945 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (992)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 212 (992)
+++.||..|+++|..+- + ..+..++|++++++.
T Consensus 90 ~~~~VR~yAV~~L~~~s----d----~eL~~yL~QLVQaLK 122 (166)
T cd00870 90 TNPVVRKYAVSRLKLAS----D----EELLLYLLQLVQALK 122 (166)
T ss_pred CCHHHHHHHHHHHHhCC----H----HHHHHHHHHHHHHHH
Confidence 46889999999987522 1 125678899988774
No 422
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=22.89 E-value=6.3e+02 Score=23.57 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=5.6
Q ss_pred CCCCcHHHHHH
Q 001945 32 KDPQVVPALVQ 42 (992)
Q Consensus 32 ~~p~~~~~l~~ 42 (992)
++|..++.++.
T Consensus 36 ~~p~aLp~~L~ 46 (169)
T cd00869 36 NEPNALPLVLA 46 (169)
T ss_pred hCcHHHHHHHH
Confidence 44555555544
No 423
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=22.80 E-value=7.6e+02 Score=25.87 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=15.2
Q ss_pred CChhHHHHHHHHHHHhHhhh
Q 001945 390 PEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~ 409 (992)
....+|.+|+.|+..+....
T Consensus 50 ~~f~lR~AA~~c~kay~~~N 69 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNN 69 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHHHHhcC
Confidence 46779999999999988754
No 424
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=22.71 E-value=5e+02 Score=22.33 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc
Q 001945 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
.+..|......++....+++...- +...++..+.+.+....+.-+...+..+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~---------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS---------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 344444455566666666664332 2234666666666665556667788888888887743
No 425
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=21.99 E-value=1.4e+02 Score=25.66 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhh
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (992)
...++.++..|.|+++.|+..|...|...+..-
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 456889999999999999999999998888763
No 426
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=21.75 E-value=6.9e+02 Score=23.67 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCC
Q 001945 843 TMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPD 922 (992)
Q Consensus 843 ~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 922 (992)
..+-+++-.+++.+++.+.++ .+.+.++......+..-|- ..+..+....|..-...+..++..+..+...++.+
T Consensus 68 ~~va~~LK~flr~LpepLi~~--~~~~~~~~~~~~~~~~~~i---~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~N 142 (186)
T cd04377 68 HVITSVLKQWLRELPEPLMTF--ELYENFLRAMELEEKQERV---RALYSVLEQLPRANLNTLERLIFHLVRVALQEEVN 142 (186)
T ss_pred HHHHHHHHHHHHcCCCccCCH--HHHHHHHHHHhcCCHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 345556666677777665443 4455555555544444333 33444555555432223444555555555556667
Q ss_pred hhhHhhHHHHHHHHHHhCCCCC
Q 001945 923 DAVRDNAAGAVARMIMVNPQSI 944 (992)
Q Consensus 923 ~~~~~n~~~~l~~l~~~~~~~~ 944 (992)
.+..+|.+.++|-.+...|+..
T Consensus 143 kM~~~nLaivf~P~ll~~~~~~ 164 (186)
T cd04377 143 RMSANALAIVFAPCILRCPDTA 164 (186)
T ss_pred CCCHHHHHHHHhhHhcCCCCCC
Confidence 7778888888888777766554
No 427
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.55 E-value=7.5e+02 Score=24.00 Aligned_cols=155 Identities=20% Similarity=0.182 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHHhCC-CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHh
Q 001945 16 DNDARRQAEDQIKRLAKD-PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAP 94 (992)
Q Consensus 16 d~~~r~~A~~~l~~~~~~-p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~ 94 (992)
-++.|+-|...+...... .+....|..-+-.+..-+.|..|..++.... ..++++..+.+.. .+..-.++.
T Consensus 25 ~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~----~~~~~~~~~~~~~----~l~~~~~Wd 96 (208)
T cd07064 25 TPERRALSKPFLKESKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYK----KFLTPEDLPLLEE----LITTKSWWD 96 (208)
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH----HHcCCchHH
Confidence 556777777777766654 3455555555554555678888887776643 2345554443333 233334566
Q ss_pred HHHHHHHHH-HHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCC
Q 001945 95 VRRASANVV-SIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETS 173 (992)
Q Consensus 95 vr~~~~~~l-~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 173 (992)
+-..+|.-+ +.+.. .-+.+.+.+..+..+++.-.|..|+...-...+ ....+.+..++...+.+ ++
T Consensus 97 ~vD~~~~~i~g~~~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~------~~~~~~l~~~~~~~~~d-~e 163 (208)
T cd07064 97 TVDSLAKVVGGILLA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKE------KTDTDLLFEIILANLGS-KE 163 (208)
T ss_pred HHHHHHHHHhHHHHh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHhCCC-hH
Confidence 666555544 33332 223457888999999998888887754333222 12345677777888888 88
Q ss_pred hHHHHHHHHHHHHhhccc
Q 001945 174 NRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 174 ~~vr~~a~~~l~~l~~~~ 191 (992)
.-|+++.-.+|..+....
T Consensus 164 ~fI~KAiGW~LRe~~k~d 181 (208)
T cd07064 164 FFIRKAIGWALREYSKTN 181 (208)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 889999888888877764
No 428
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.46 E-value=1.9e+02 Score=26.75 Aligned_cols=59 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHcccCCCCCC-----cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH
Q 001945 99 SANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (992)
Q Consensus 99 ~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 158 (992)
+++++..+....-++ .| ..++|.+..+++++...+...|+..+..+...+++.+.....
T Consensus 46 lvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~~~ 109 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSNLS 109 (164)
T ss_pred HHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=21.17 E-value=1.2e+03 Score=26.30 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcH---------HHHHHHHhcCCC---hhHHHHHHHHHHHhhh---hccc
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVV---------PALVQHLRTAKT---PNVRQLAAVLLRKKIT---GHWA 69 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~---------~~l~~il~~~~~---~~~r~~a~~~l~~~i~---~~~~ 69 (992)
..++.+.++++++..+..|-..|.++..++.|+ ..|..++.++.. ..+-.++...+...+. -.|.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 356788889999999988999998888887554 344555543322 2222222222221111 3688
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC---cchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001945 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (992)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~---~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (992)
.++......+.... .... .+..+-..+...+..++........| .-.+..++..++.++......|+..+..++
T Consensus 165 ~~~~~fV~~~a~~V--~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYV--NAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHH--hhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 77765444333222 1111 23333334444444444322111223 224556666666655555444666666655
Q ss_pred hhhh
Q 001945 147 ETIG 150 (992)
Q Consensus 147 ~~~~ 150 (992)
...+
T Consensus 242 ~~a~ 245 (713)
T KOG2999|consen 242 RKAP 245 (713)
T ss_pred hhCC
Confidence 4444
No 430
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=20.86 E-value=1.1e+03 Score=25.71 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=35.4
Q ss_pred hcCCChh-hHHHHHHHHHHHhh-cCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhh
Q 001945 346 CQNASPK-YREAAVTAIGIISE-GCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (992)
Q Consensus 346 l~~~~~~-~r~~al~~l~~i~~-~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (992)
+.-.++. .|++|+ +++.++- ++...-...+ ..+-+.++......+...|..||.+...++..
T Consensus 273 ~rRt~P~lLRH~AL-AL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 273 CRRTDPALLRHCAL-ALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred cccCCHHHHHHHHH-HhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 3334444 455554 5665554 3332222222 23444555555566888999999988888765
No 431
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.79 E-value=2.3e+02 Score=24.30 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=40.0
Q ss_pred HHHHHhcccC--ChHHHHHHHHHHHHHHHhhcc---ccccchHHHHHHHHHHhcCC----CHhHHHHHHHHHHHHHHHhh
Q 001945 422 PCILNALEDE--SDEVKEKSYYALAAFCEDMGE---EILPFLDPLMGKLLAALENS----PRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 422 ~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~l~~~l~~~l~~~----~~~v~~~a~~~l~~l~~~~~ 492 (992)
.-++..|..+ ++.-...|......+++.-+. ++..+..+++..|+.+=+.. -...|.+|+.+ ++-..+
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alva---l~v~~P 82 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVA---LVVAAP 82 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHH---HHHHSG
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHH---HHHHhh
Confidence 3344555422 355567788888888887655 78889999999888774432 23455555544 444445
Q ss_pred ccCccc
Q 001945 493 QAFIPY 498 (992)
Q Consensus 493 ~~~~~~ 498 (992)
....+|
T Consensus 83 ~~~~~~ 88 (114)
T PF10193_consen 83 EKVAPY 88 (114)
T ss_dssp GGHHH-
T ss_pred HHHHHH
Confidence 544444
No 432
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.58 E-value=4.1e+02 Score=22.79 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=38.4
Q ss_pred HHHHHHhcC-CC-ChHhHHHHHHHHHHHHhhcCc---chhhHHHHHHHhhhhhhCC--CCCChhhHhhHHHHH
Q 001945 868 MPLVLKELA-SP-DAMNRRNAAFCVGELCKNGGE---SALKYYGDILRGLYPLFGD--SEPDDAVRDNAAGAV 933 (992)
Q Consensus 868 ~~~ll~~l~-~~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~l~~l~~~l~~--~~~~~~~~~n~~~~l 933 (992)
+.-++..+. +. +++..+.|....-.++...+. .+..+..+++..|..+=.. -+..+..|.+|+.++
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH
Confidence 344555555 22 577888999999999998877 7888888888877544332 133456777665554
No 433
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.51 E-value=4.8e+02 Score=25.23 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCC
Q 001945 843 TMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPD 922 (992)
Q Consensus 843 ~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 922 (992)
..+-++|..+++.+++.+.++ .+.+.++...+..+.+.|-. .+..++..-|..-...+..++..|..+...++.+
T Consensus 87 h~va~lLK~fLReLPePLi~~--~~y~~~i~~~~~~~~~~ri~---~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~N 161 (203)
T cd04374 87 KTITSALKTYLRNLPEPLMTY--ELHNDFINAAKSENLESRVN---AIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKN 161 (203)
T ss_pred HHHHHHHHHHHHcCCCCcCCH--HHHHHHHHHHhCCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 346667777788887765553 55666666666655554433 4445555555432223334444554555445566
Q ss_pred hhhHhhHHHHHHHHHH
Q 001945 923 DAVRDNAAGAVARMIM 938 (992)
Q Consensus 923 ~~~~~n~~~~l~~l~~ 938 (992)
.+...|.+.++|-.+.
T Consensus 162 kM~~~NLAivf~P~Ll 177 (203)
T cd04374 162 LMTVSNLGVVFGPTLL 177 (203)
T ss_pred cCCHHHHHHHhccccC
Confidence 7777777777765443
Done!