Query 001945
Match_columns 992
No_of_seqs 326 out of 3188
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 2.7E-61 9.2E-66 585.8 72.9 752 3-987 13-793 (852)
2 2bpt_A Importin beta-1 subunit 100.0 2.5E-57 8.6E-62 556.7 75.0 779 3-895 4-857 (861)
3 1qgr_A Protein (importin beta 100.0 1.8E-55 6.1E-60 541.3 71.2 787 4-898 2-874 (876)
4 1u6g_C TIP120 protein, CAND1; 100.0 1.6E-50 5.3E-55 511.3 69.0 915 3-987 6-1141(1230)
5 1wa5_C Importin alpha RE-expor 100.0 2.4E-43 8.1E-48 431.4 68.9 689 3-754 5-795 (960)
6 2x19_B Importin-13; nuclear tr 100.0 1.7E-41 5.7E-46 419.0 63.3 715 3-774 24-875 (963)
7 2x1g_F Cadmus; transport prote 100.0 3.1E-42 1.1E-46 424.6 54.2 689 3-752 7-860 (971)
8 1u6g_C TIP120 protein, CAND1; 100.0 6.8E-40 2.3E-44 414.2 66.0 860 37-984 8-1100(1230)
9 1qgr_A Protein (importin beta 100.0 4.2E-39 1.4E-43 395.7 67.1 751 47-941 12-874 (876)
10 3m1i_C Exportin-1; heat repeat 100.0 3.3E-38 1.1E-42 389.1 68.3 756 2-853 15-928 (1049)
11 2bpt_A Importin beta-1 subunit 100.0 4.8E-36 1.6E-40 367.8 73.1 771 84-938 10-857 (861)
12 4fdd_A Transportin-1; heat rep 100.0 8.2E-37 2.8E-41 370.8 62.1 672 6-754 51-788 (852)
13 4hat_C Exportin-1; heat repeat 100.0 9.4E-35 3.2E-39 347.0 75.6 770 3-855 16-933 (1023)
14 3ibv_A Exportin-T; karyopherin 100.0 6E-36 2.1E-40 357.8 55.9 747 3-827 6-940 (980)
15 1ibr_B P95, importin beta-1 su 100.0 1.6E-37 5.6E-42 351.4 31.7 419 4-429 2-461 (462)
16 3gjx_A Exportin-1; transport, 100.0 4.5E-31 1.5E-35 312.3 72.0 770 3-855 28-957 (1073)
17 1b3u_A Protein (protein phosph 100.0 5.9E-31 2E-35 307.7 47.0 570 81-748 13-585 (588)
18 1b3u_A Protein (protein phosph 100.0 9E-30 3.1E-34 297.6 47.7 569 38-696 13-585 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 2.4E-25 8.3E-30 274.4 52.2 505 1-510 9-680 (1204)
20 2x1g_F Cadmus; transport prote 99.9 2.1E-20 7.3E-25 230.1 58.4 715 129-940 18-860 (971)
21 2x19_B Importin-13; nuclear tr 99.9 8.3E-18 2.9E-22 207.4 69.9 752 84-940 30-896 (963)
22 1wa5_C Importin alpha RE-expor 99.9 6.6E-18 2.3E-22 206.6 63.3 717 91-980 17-845 (960)
23 1ibr_B P95, importin beta-1 su 99.9 2.1E-19 7.1E-24 202.7 38.6 404 215-678 10-460 (462)
24 3now_A UNC-45 protein, SD10334 99.8 6.7E-16 2.3E-20 176.4 51.8 706 130-939 20-783 (810)
25 2jdq_A Importin alpha-1 subuni 99.8 6.7E-18 2.3E-22 189.5 33.6 401 114-531 13-441 (450)
26 3now_A UNC-45 protein, SD10334 99.8 2E-15 7E-20 172.4 53.9 668 3-750 6-782 (810)
27 3m1i_C Exportin-1; heat repeat 99.8 6.8E-15 2.3E-19 181.6 63.2 744 91-938 28-929 (1049)
28 2jdq_A Importin alpha-1 subuni 99.8 1.2E-17 4.1E-22 187.4 33.7 398 37-488 22-442 (450)
29 2vgl_B AP-2 complex subunit be 99.8 2.4E-16 8.4E-21 180.8 39.0 469 5-531 51-530 (591)
30 4hat_C Exportin-1; heat repeat 99.8 1.9E-14 6.4E-19 172.5 53.1 754 119-979 17-879 (1023)
31 1wa5_B Importin alpha subunit; 99.8 1.3E-16 4.5E-21 182.1 33.1 391 80-488 89-509 (530)
32 2vgl_B AP-2 complex subunit be 99.8 4.9E-16 1.7E-20 178.3 36.7 508 3-573 13-530 (591)
33 3ibv_A Exportin-T; karyopherin 99.8 8.1E-13 2.8E-17 158.5 65.5 748 77-961 6-899 (980)
34 1wa5_B Importin alpha subunit; 99.8 3.8E-16 1.3E-20 178.2 34.7 364 115-493 84-461 (530)
35 4b8j_A Importin subunit alpha- 99.7 6E-16 2E-20 176.8 30.3 395 161-575 76-496 (528)
36 1w63_A Adapter-related protein 99.7 2E-14 6.7E-19 165.4 41.8 513 5-574 36-576 (618)
37 4b8j_A Importin subunit alpha- 99.7 9.9E-16 3.4E-20 175.0 30.6 362 118-493 74-447 (528)
38 2qk1_A Protein STU2; STU2P, XM 99.7 1.5E-17 5.3E-22 165.7 13.1 203 341-546 20-233 (249)
39 2z6g_A B-catenin; FULL-length, 99.7 6E-15 2E-19 174.4 34.7 509 37-580 117-668 (780)
40 3gjx_A Exportin-1; transport, 99.7 4.5E-12 1.5E-16 150.7 57.6 754 119-979 29-905 (1073)
41 2z6h_A Catenin beta-1, beta-ca 99.7 3.4E-14 1.2E-18 165.8 33.3 456 5-490 16-528 (644)
42 2qk2_A LP04448P; mini spindles 99.7 3.8E-16 1.3E-20 157.2 14.5 204 334-546 12-218 (242)
43 2z6g_A B-catenin; FULL-length, 99.7 3.8E-14 1.3E-18 167.6 32.7 466 5-492 152-666 (780)
44 1jdh_A Beta-catenin; beta-cate 99.6 1.4E-13 4.6E-18 157.9 32.5 453 5-487 19-528 (529)
45 3ul1_B Importin subunit alpha- 99.6 2.3E-13 7.9E-18 153.2 33.2 362 119-492 58-433 (510)
46 2z6h_A Catenin beta-1, beta-ca 99.6 2.7E-13 9.3E-18 158.1 34.9 472 80-578 16-530 (644)
47 3tpo_A Importin subunit alpha- 99.6 2E-13 6.9E-18 154.8 32.6 366 115-492 73-452 (529)
48 1w63_A Adapter-related protein 99.6 3.4E-12 1.2E-16 146.8 41.8 476 4-532 71-576 (618)
49 3ul1_B Importin subunit alpha- 99.6 4.5E-13 1.5E-17 150.8 30.3 398 161-573 59-476 (510)
50 3tpo_A Importin subunit alpha- 99.6 8.5E-13 2.9E-17 149.6 32.6 398 161-573 78-495 (529)
51 1jdh_A Beta-catenin; beta-cate 99.6 2.9E-13 9.8E-18 155.2 29.0 469 77-573 16-528 (529)
52 2vgl_A Adaptor protein complex 99.6 1.1E-11 3.7E-16 141.8 41.4 485 5-532 76-588 (621)
53 2vgl_A Adaptor protein complex 99.6 3.6E-11 1.2E-15 137.4 44.4 500 16-573 51-587 (621)
54 2qk2_A LP04448P; mini spindles 99.5 5.1E-13 1.7E-17 134.3 18.3 187 310-502 26-219 (242)
55 2qk1_A Protein STU2; STU2P, XM 99.5 1.9E-13 6.5E-18 136.1 14.4 192 310-502 27-234 (249)
56 3l6x_A Catenin delta-1; cateni 99.3 4.4E-09 1.5E-13 116.2 34.6 366 114-489 43-476 (584)
57 1xm9_A Plakophilin 1; armadill 99.3 1.4E-09 4.7E-14 120.2 28.9 352 120-488 4-448 (457)
58 4hxt_A De novo protein OR329; 99.3 6E-10 2.1E-14 113.2 24.0 241 211-499 7-251 (252)
59 4hxt_A De novo protein OR329; 99.3 1.3E-10 4.6E-15 118.1 18.4 242 339-584 4-250 (252)
60 3opb_A SWI5-dependent HO expre 99.2 1.8E-07 6.3E-12 104.9 43.0 466 81-576 135-684 (778)
61 3a6p_A Exportin-5; exportin-5, 99.2 5E-07 1.7E-11 111.8 50.7 255 391-679 315-635 (1204)
62 3opb_A SWI5-dependent HO expre 99.2 2.2E-07 7.4E-12 104.3 41.1 517 116-698 130-728 (778)
63 3nmz_A APC variant protein; pr 99.2 2.4E-09 8.1E-14 115.7 24.1 363 118-492 32-453 (458)
64 1oyz_A Hypothetical protein YI 99.2 4.9E-09 1.7E-13 108.1 25.2 251 161-484 25-277 (280)
65 1oyz_A Hypothetical protein YI 99.2 2.3E-09 7.9E-14 110.5 22.1 208 339-597 25-233 (280)
66 4db8_A Armadillo-repeat protei 99.1 3.9E-10 1.3E-14 114.5 14.7 233 339-575 14-251 (252)
67 4db8_A Armadillo-repeat protei 99.1 9E-10 3.1E-14 111.8 17.3 218 262-488 25-250 (252)
68 2iw3_A Elongation factor 3A; a 99.1 8.2E-09 2.8E-13 120.0 27.1 292 221-532 29-326 (986)
69 3l6x_A Catenin delta-1; cateni 99.1 8E-08 2.8E-12 106.3 32.6 354 82-448 52-476 (584)
70 1xm9_A Plakophilin 1; armadill 99.1 4.9E-08 1.7E-12 107.7 28.6 352 82-448 6-449 (457)
71 4db6_A Armadillo repeat protei 99.1 2.1E-09 7.1E-14 105.5 15.2 193 337-532 12-208 (210)
72 2db0_A 253AA long hypothetical 99.0 2.5E-07 8.4E-12 80.7 25.0 214 206-447 32-245 (253)
73 3ltm_A Alpha-REP4; protein eng 99.0 2.5E-09 8.5E-14 104.8 13.9 189 336-578 18-206 (211)
74 3nmz_A APC variant protein; pr 99.0 8.9E-08 3.1E-12 103.5 27.0 328 248-579 71-454 (458)
75 2db0_A 253AA long hypothetical 99.0 8.3E-08 2.8E-12 83.7 20.7 215 337-575 32-246 (253)
76 1xqr_A HSPBP1 protein; armadil 99.0 3.3E-08 1.1E-12 100.5 21.2 215 352-571 55-283 (296)
77 3ltj_A Alpharep-4; protein eng 99.0 7.9E-09 2.7E-13 100.3 16.0 188 333-574 10-197 (201)
78 4db6_A Armadillo repeat protei 99.0 1.1E-08 3.8E-13 100.2 17.0 175 314-488 27-208 (210)
79 3ltj_A Alpharep-4; protein eng 98.9 1.6E-08 5.5E-13 98.1 16.1 184 247-488 14-197 (201)
80 3ltm_A Alpha-REP4; protein eng 98.9 2.2E-08 7.6E-13 98.0 15.7 184 250-491 22-205 (211)
81 1xqr_A HSPBP1 protein; armadil 98.9 6.6E-08 2.2E-12 98.3 19.1 152 339-490 83-239 (296)
82 2iw3_A Elongation factor 3A; a 98.8 1.8E-06 6E-11 100.7 28.6 296 83-409 19-326 (986)
83 3nmw_A APC variant protein; AR 98.7 1.7E-06 5.7E-11 90.6 23.4 272 174-493 46-338 (354)
84 2of3_A ZYG-9; multifunctional 98.7 1.4E-06 4.8E-11 85.0 20.3 186 343-538 52-241 (266)
85 4ady_A RPN2, 26S proteasome re 98.7 0.00032 1.1E-08 80.8 42.6 331 117-512 357-699 (963)
86 4ady_A RPN2, 26S proteasome re 98.7 2E-05 6.7E-10 90.7 32.7 313 117-487 391-717 (963)
87 3nmw_A APC variant protein; AR 98.6 1.2E-05 4E-10 84.2 25.0 269 133-452 47-338 (354)
88 3b2a_A TON_1937, putative unch 98.6 2.8E-06 9.6E-11 78.2 17.0 200 378-596 33-233 (265)
89 4ffb_C Protein STU2; tubulin f 98.5 1.7E-06 5.9E-11 88.3 17.3 188 342-537 14-216 (278)
90 2of3_A ZYG-9; multifunctional 98.5 1.6E-06 5.4E-11 84.6 15.5 179 313-501 60-248 (266)
91 3tjz_B Coatomer subunit gamma; 98.5 4.2E-06 1.5E-10 86.1 19.0 291 69-403 59-349 (355)
92 1vsy_5 Proteasome activator BL 98.5 0.00028 9.7E-09 83.7 36.8 450 4-491 134-666 (997)
93 4gmo_A Putative uncharacterize 98.5 0.00033 1.1E-08 81.2 35.9 90 338-429 36-129 (684)
94 3b2a_A TON_1937, putative unch 98.5 5.6E-05 1.9E-09 69.7 22.2 181 338-532 34-217 (265)
95 1vsy_5 Proteasome activator BL 98.4 0.00068 2.3E-08 80.5 36.0 226 207-449 134-366 (997)
96 1te4_A Conserved protein MTH18 98.3 1.3E-07 4.6E-12 83.7 1.7 122 334-486 9-130 (131)
97 4ffb_C Protein STU2; tubulin f 98.3 9.4E-06 3.2E-10 82.8 15.6 180 311-495 21-218 (278)
98 3grl_A General vesicular trans 98.3 0.0036 1.2E-07 68.6 35.8 317 35-369 21-397 (651)
99 3oc3_A Helicase MOT1, MOT1; re 98.2 2.6E-06 9E-11 88.7 7.8 159 314-488 243-403 (800)
100 3tjz_B Coatomer subunit gamma; 98.1 6.6E-05 2.3E-09 77.3 16.0 304 95-484 44-348 (355)
101 3oc3_A Helicase MOT1, MOT1; re 98.0 5.2E-05 1.8E-09 79.3 13.5 219 334-574 172-403 (800)
102 3grl_A General vesicular trans 97.9 0.052 1.8E-06 59.6 39.6 324 75-409 18-396 (651)
103 1te4_A Conserved protein MTH18 97.9 2E-05 6.8E-10 69.5 6.6 86 340-445 45-130 (131)
104 4gmo_A Putative uncharacterize 97.8 0.044 1.5E-06 63.4 36.1 160 119-283 36-219 (684)
105 3u0r_A Apoptosis inhibitor 5; 97.7 0.046 1.6E-06 57.0 28.3 270 120-430 31-323 (507)
106 3tt9_A Plakophilin-2; cell adh 97.6 0.0025 8.6E-08 61.4 18.0 151 338-489 9-180 (233)
107 1vsy_4 Proteasome activator BL 97.4 0.32 1.1E-05 56.3 35.0 447 376-894 129-686 (799)
108 3u0r_A Apoptosis inhibitor 5; 97.4 0.17 5.9E-06 52.9 31.7 323 24-372 14-364 (507)
109 3tt9_A Plakophilin-2; cell adh 97.4 0.0022 7.6E-08 61.8 13.9 194 380-574 10-228 (233)
110 3l9t_A Putative uncharacterize 97.1 0.041 1.4E-06 51.7 18.6 140 35-191 70-209 (240)
111 3l9t_A Putative uncharacterize 97.1 0.0032 1.1E-07 59.1 10.5 142 335-493 69-211 (240)
112 1vsy_4 Proteasome activator BL 96.7 0.3 1E-05 56.5 25.6 298 370-701 331-690 (799)
113 1ho8_A Vacuolar ATP synthase s 96.6 0.93 3.2E-05 47.9 28.7 352 30-407 72-476 (480)
114 3fga_B Serine/threonine-protei 96.0 0.46 1.6E-05 49.1 19.3 236 4-248 130-379 (403)
115 3gs3_A Symplekin, LD45768P; he 96.0 1.3 4.4E-05 43.0 24.5 190 95-296 31-255 (257)
116 3o2t_A Symplekin; heat repeat, 95.8 2.2 7.5E-05 44.1 25.2 189 96-300 42-272 (386)
117 4atg_A TAF6; transcription, TF 95.6 0.5 1.7E-05 43.3 15.7 163 370-553 7-178 (196)
118 3gs3_A Symplekin, LD45768P; he 95.4 2.1 7E-05 41.6 21.5 171 72-246 47-254 (257)
119 2npp_B PP2A, B subunit, serine 95.4 0.3 1E-05 51.4 15.5 233 4-245 163-409 (449)
120 4atg_A TAF6; transcription, TF 95.4 0.39 1.3E-05 44.0 14.2 138 410-560 6-145 (196)
121 1w9c_A CRM1 protein, exportin 95.0 2.4 8.3E-05 42.3 19.7 127 541-701 68-199 (321)
122 3fga_B Serine/threonine-protei 94.0 6.6 0.00023 40.7 24.7 216 348-571 95-318 (403)
123 1juq_A ADP-ribosylation factor 92.9 1.5 5.2E-05 39.5 12.5 112 345-466 25-144 (171)
124 1w9c_A CRM1 protein, exportin 92.5 6.5 0.00022 39.2 17.4 132 805-937 96-244 (321)
125 2jak_A Serine/threonine-protei 92.2 7.8 0.00027 39.9 18.0 217 347-571 139-363 (392)
126 3ldz_A STAM-1, signal transduc 92.1 1.8 6.1E-05 37.5 11.5 88 378-465 42-132 (140)
127 3o2t_A Symplekin; heat repeat, 91.3 15 0.00051 37.9 26.0 171 332-510 58-273 (386)
128 3g2s_A C-terminal fragment of 90.4 2.9 9.8E-05 36.6 11.1 75 378-452 48-130 (149)
129 1lsh_A Lipovitellin (LV-1N, LV 90.1 18 0.00062 43.9 21.8 149 314-488 410-575 (1056)
130 1x5b_A Signal transducing adap 90.1 4.1 0.00014 36.3 12.1 75 378-452 52-129 (163)
131 1mhq_A ADP-ribosylation factor 90.1 6.5 0.00022 34.3 13.1 75 378-452 38-120 (148)
132 3dad_A FH1/FH2 domain-containi 89.9 14 0.00046 37.1 16.6 148 344-492 125-289 (339)
133 1lrv_A LRV, leucine-rich repea 89.0 0.15 5.2E-06 49.4 2.1 92 342-485 151-242 (244)
134 3ldz_A STAM-1, signal transduc 88.9 2.9 0.0001 36.2 10.0 75 419-493 42-118 (140)
135 1juq_A ADP-ribosylation factor 88.9 5.5 0.00019 35.8 12.1 76 418-493 49-132 (171)
136 2fv2_A RCD1 required for cell 87.4 4.9 0.00017 38.2 10.9 110 841-958 118-237 (268)
137 3g2s_A C-terminal fragment of 87.2 4.1 0.00014 35.6 9.9 75 419-493 48-130 (149)
138 3dad_A FH1/FH2 domain-containi 84.8 34 0.0012 34.2 17.2 150 125-279 125-287 (339)
139 1mhq_A ADP-ribosylation factor 84.0 5.9 0.0002 34.6 9.3 76 418-493 37-120 (148)
140 3zyq_A Hepatocyte growth facto 83.9 12 0.00043 35.4 12.4 75 378-452 45-122 (226)
141 1elk_A Target of MYB1; superhe 83.7 16 0.00054 32.3 12.1 75 378-452 53-134 (157)
142 1vdy_A Hypothetical protein (R 83.6 6.9 0.00024 33.5 9.2 98 310-407 22-130 (140)
143 1x5b_A Signal transducing adap 83.5 6.5 0.00022 35.0 9.6 75 419-493 52-129 (163)
144 2npp_B PP2A, B subunit, serine 83.3 49 0.0017 34.9 24.3 80 199-282 319-403 (449)
145 1ho8_A Vacuolar ATP synthase s 83.1 51 0.0018 34.9 25.6 58 390-448 417-476 (480)
146 1lsh_A Lipovitellin (LV-1N, LV 81.9 90 0.0031 37.8 21.8 174 35-238 391-579 (1056)
147 2jak_A Serine/threonine-protei 80.4 56 0.0019 33.7 16.2 210 646-890 147-362 (392)
148 1lrv_A LRV, leucine-rich repea 80.2 0.62 2.1E-05 45.1 1.8 67 342-443 175-241 (244)
149 1vdy_A Hypothetical protein (R 77.5 7.1 0.00024 33.4 7.2 103 343-448 17-130 (140)
150 1dvp_A HRS, hepatocyte growth 76.9 25 0.00084 33.3 11.9 75 378-452 42-119 (220)
151 1elk_A Target of MYB1; superhe 73.4 30 0.001 30.5 10.6 80 458-537 51-134 (157)
152 1upk_A MO25 protein; transfera 73.4 79 0.0027 31.7 20.6 182 49-237 91-285 (341)
153 2fv2_A RCD1 required for cell 73.0 43 0.0015 31.9 11.8 180 3-190 3-225 (268)
154 3qml_C Protein SLS1, nucleotid 72.5 57 0.002 32.1 12.9 154 116-277 20-188 (315)
155 1upk_A MO25 protein; transfera 68.1 1E+02 0.0035 30.9 23.6 107 344-450 171-285 (341)
156 3zyq_A Hepatocyte growth facto 67.4 59 0.002 30.8 11.9 78 458-537 43-122 (226)
157 3jxy_A Alkylpurine DNA glycosy 65.4 95 0.0032 29.5 15.5 132 40-191 65-197 (232)
158 3rru_A TOM1L1 protein; structu 65.4 36 0.0012 29.7 9.2 113 345-465 28-148 (152)
159 1dvp_A HRS, hepatocyte growth 64.4 66 0.0023 30.2 11.7 78 458-537 40-119 (220)
160 2b6c_A Hypothetical protein EF 61.7 54 0.0019 30.9 10.6 133 340-492 58-191 (220)
161 2b6c_A Hypothetical protein EF 59.6 1.2E+02 0.004 28.5 14.0 153 17-191 35-190 (220)
162 3d9j_A RNA-binding protein 16; 57.0 54 0.0018 28.4 8.8 66 383-452 10-75 (145)
163 1sz9_A PCF11 protein; RNA poly 53.2 1.1E+02 0.0038 26.3 12.0 96 416-511 40-136 (144)
164 4flb_A Regulation of nuclear P 51.0 98 0.0034 26.1 9.5 66 377-451 7-72 (132)
165 3qml_C Protein SLS1, nucleotid 50.7 1.9E+02 0.0066 28.4 18.3 109 378-489 71-189 (315)
166 1t06_A Hypothetical protein; s 50.6 35 0.0012 32.6 7.3 74 336-411 107-184 (235)
167 1sz9_A PCF11 protein; RNA poly 46.3 1.1E+02 0.0036 26.5 8.9 95 375-469 40-135 (144)
168 3jxy_A Alkylpurine DNA glycosy 45.0 20 0.00068 34.2 4.6 71 339-416 133-204 (232)
169 3ut4_A CTHE_2751, putative unc 44.6 1.4E+02 0.0049 25.1 11.6 101 818-936 25-128 (134)
170 3rru_A TOM1L1 protein; structu 38.7 75 0.0026 27.7 6.8 80 458-537 51-134 (152)
171 3ebb_A Phospholipase A2-activa 35.3 3.4E+02 0.012 26.9 14.6 148 380-532 105-262 (304)
172 3kuq_A RHO GTPase-activating p 35.3 81 0.0028 29.9 7.1 133 844-981 90-226 (228)
173 4fu3_A Regulation of nuclear P 34.8 2.1E+02 0.007 24.1 10.0 66 378-452 7-72 (135)
174 4fu3_A Regulation of nuclear P 29.0 2.6E+02 0.0088 23.5 10.8 75 419-502 7-81 (135)
175 3ut4_A CTHE_2751, putative unc 28.7 2.6E+02 0.009 23.5 10.1 99 331-446 25-128 (134)
176 3eg5_B Protein diaphanous homo 27.2 5.3E+02 0.018 26.5 17.4 102 390-492 132-249 (383)
177 3s4w_B Protein FACD2, fanconi 27.2 9.5E+02 0.032 29.5 32.8 117 413-536 394-510 (1323)
178 3jui_A Translation initiation 27.2 3E+02 0.01 24.8 9.0 79 172-253 49-132 (182)
179 3l3f_X Protein DOA1, DOA1/UFD3 26.3 5.3E+02 0.018 26.2 11.7 131 351-489 177-326 (362)
180 1t06_A Hypothetical protein; s 23.4 1.7E+02 0.0059 27.7 7.1 73 826-901 110-186 (235)
181 4f52_E Glomulin; cullin-ring E 20.6 6.2E+02 0.021 28.0 11.7 112 334-450 314-433 (596)
182 2km4_A Regulator of TY1 transp 20.2 4E+02 0.014 22.6 9.7 65 378-451 6-72 (142)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.7e-61 Score=585.76 Aligned_cols=752 Identities=18% Similarity=0.272 Sum_probs=614.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
+++.++|+.++|||+++|++|+++|++++++|++...|..++. ++.++.+|++|+++||+.+.++|..++++.+..||
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik 92 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK 92 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 5788899999999999999999999999999999999999998 46789999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc-----cc
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----RP 155 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~-----~~ 155 (992)
+.+++.|. ++++.+|+.++.+++.+++.+++ +.||++++.+.+.++++++..+++++.+++.+++..++.+ ..
T Consensus 93 ~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~ 170 (852)
T 4fdd_A 93 SECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR 170 (852)
T ss_dssp HHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence 99999988 68899999999999999998866 5999999999999999999999999999999998877543 34
Q ss_pred cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 235 (992)
.++.+++.+.+++++ +++.||..|++++..++...+. .+...++.+++.+...+.+++++++..++++|..+++
T Consensus 171 ~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 171 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp CHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 478899999999998 9999999999999988765421 2445567777777777888899999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhc-----------cC
Q 001945 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA-----------ES 304 (992)
Q Consensus 236 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~-----------~~ 304 (992)
..+..+.++++.+++.++....+. ++++|..++++|..+++.....-.-.+++..+++.+++.|. +.
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 999999999999999999888765 78999999999999886421111113478889999988884 21
Q ss_pred CCCCCC----CCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHH
Q 001945 305 NEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVL 380 (992)
Q Consensus 305 ~~~~~d----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~ 380 (992)
++|+++ ++|.+|.++..+++.++...|+.+++.+++.+.+.+++++|+.|++|+.+++.+++++.+.+.++++.++
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l 402 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI 402 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 122222 5689999999999999999998899999999999999999999999999999999999988888999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH
Q 001945 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (992)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 459 (992)
+.++..++|+++.||.+|+++++++++.+++. ...++..+++.++..+.++++.||..|++++..+++.++..+.||++
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~ 482 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA 482 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence 99999999999999999999999999987542 34577899999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc--ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch
Q 001945 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (992)
Q Consensus 460 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (992)
.+++.|...++..+......++++++.++...+..+. +|++.++|.+.+.+..
T Consensus 483 ~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~------------------------- 537 (852)
T 4fdd_A 483 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM------------------------- 537 (852)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-------------------------
Confidence 9999999999888777777888999999887776543 2555555544332211
Q ss_pred hhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccC
Q 001945 538 ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGF 617 (992)
Q Consensus 538 ~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (992)
+.++++.++
T Consensus 538 -----------------l~d~~~~~~------------------------------------------------------ 546 (852)
T 4fdd_A 538 -----------------LKDEDKDLF------------------------------------------------------ 546 (852)
T ss_dssp -----------------SCTTCTTHH------------------------------------------------------
T ss_pred -----------------cccccHHHH------------------------------------------------------
Confidence 111111111
Q ss_pred CCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 001945 618 GGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNIL 697 (992)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~ 697 (992)
.++++++.++...|..+.||++++++.++..+.
T Consensus 547 -----------------------------~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~------------------ 579 (852)
T 4fdd_A 547 -----------------------------PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ------------------ 579 (852)
T ss_dssp -----------------------------HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH------------------
T ss_pred -----------------------------HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH------------------
Confidence 223333333334444444455443322111000
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhh
Q 001945 698 TAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST 777 (992)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 777 (992)
. . +.+ . ......+. ..
T Consensus 580 -~-----------------~-------l~~--------~-----------~~~~~~~~-------------------~~- 595 (852)
T 4fdd_A 580 -K-----------------T-------LAQ--------A-----------MLNNAQPD-------------------QY- 595 (852)
T ss_dssp -H-----------------H-------HHH--------H-----------HHHHHCTT-------------------TS-
T ss_pred -H-----------------H-------HHH--------H-----------HHhhcCCc-------------------cc-
Confidence 0 0 000 0 00000000 00
Q ss_pred hcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHH--HHHHHHHHHhhcCCCCccchhhHHHHHHHHHhh
Q 001945 778 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIF--AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD 855 (992)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~ 855 (992)
.+.+..++.++.++++.+++.+|+.+.+|+ ..+++.++..+++..+ .+|..++.+++++++.
T Consensus 596 ---------------~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 596 ---------------EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKA 659 (852)
T ss_dssp ---------------CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHH
T ss_pred ---------------CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHH
Confidence 000112344567888899999999999998 6899999999987654 6899999999999999
Q ss_pred cCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHH
Q 001945 856 MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVAR 935 (992)
Q Consensus 856 ~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~ 935 (992)
++....+|++.++|.+.+.+.+.++++|.+|++++|.++...++.+.||+..+++.|.+++..++....+++|++.++|+
T Consensus 660 ~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igr 739 (852)
T 4fdd_A 660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 739 (852)
T ss_dssp CGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999998776677899999999999
Q ss_pred HHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCcccccC
Q 001945 936 MIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQ 987 (992)
Q Consensus 936 l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~ 987 (992)
+...+|+.+ | ++++++.|++.||..+|.+|...++++||.++..||+.+++.
T Consensus 740 l~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~ 793 (852)
T 4fdd_A 740 LGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD 793 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHH
Confidence 999998876 4 899999999999999999999999999999999999987654
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.5e-57 Score=556.73 Aligned_cols=779 Identities=18% Similarity=0.254 Sum_probs=645.9
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhc-----------
Q 001945 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH----------- 67 (992)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~l~~~~~~--p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~----------- 67 (992)
+++.++|+.+ +|||++.|++|+++|++++++ |+++..|++++.++ .++.+|++|+++||+.+..+
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 5889999999 999999999999999999875 89999999999875 58899999999999998654
Q ss_pred ccC-CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 001945 68 WAK-LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSL 145 (992)
Q Consensus 68 ~~~-~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l 145 (992)
|.. ++++.+..||+.+++.|.+ .++.+|+.++.+++.+++.++|.+.||++++.+.+.++++ ++..|..++.++..+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 675 9999999999999999985 6799999999999999999888668999999999999988 899999999999999
Q ss_pred hhhhhhc---ccccHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH
Q 001945 146 TETIGQT---FRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (992)
Q Consensus 146 ~~~~~~~---~~~~~~~i~~~l~~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 220 (992)
++..++. +.++.+.+++.+..++.+ + ++.||..|++++..++.+..+..... ...+.+++.+...+.++++
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCSCH
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHccCh---hHHHHHHHHHHHHhcCCCH
Confidence 9877654 567899999999999998 5 89999999999999887763211100 0123455666666777889
Q ss_pred HHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHh-----------------
Q 001945 221 DVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN----------------- 282 (992)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~----------------- 282 (992)
+++..++.++..+++..+..+.+++. .+++.+.....+. ++++|..++++|..+++....
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 99999999999999988888888888 8888887776554 789999999999999875321
Q ss_pred HhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 001945 283 SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIG 362 (992)
Q Consensus 283 ~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~ 362 (992)
... +++..+++.++..|.+.+++++|++|..|..+..+++.++..+++.+++.+++.+.+.+++++|+.|++|+.+++
T Consensus 317 ~~~--~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 317 FAL--SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp HHH--HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 111 144678888888888776666677899999999999999999998899999999999999999999999999999
Q ss_pred HHhhcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH--HhhhhhHHHHHHHhcccCChHHHHHH
Q 001945 363 IISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKS 439 (992)
Q Consensus 363 ~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~v~~~a 439 (992)
.+++++. +.+.++++.+++.++..+.|+++.||.++++++++++..+++.+ .++++.++|.++..+.++ ++||..+
T Consensus 395 ~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp HTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHH
Confidence 9999885 77888899999999999999999999999999999999886543 457889999999999887 8999999
Q ss_pred HHHHHHHHHhhc----cccccchHHHHHHHHHHhcCCC--HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 001945 440 YYALAAFCEDMG----EEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 440 ~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (992)
++++..+++.++ ..+.||++.+++.+...+.+.+ ..+|..++++++.++...+..+.+|++.++|.+.+.+...
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQT 553 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999875 5678999999999999998544 7899999999999999999888999999998888777532
Q ss_pred --------C----hhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCc-hhhHHHHHHHHHHHHHcccC
Q 001945 514 --------N----DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS-ELREYTHGFFSNIAGVLEDG 580 (992)
Q Consensus 514 --------~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~r~~~~~~~~~i~~~~~~~ 580 (992)
+ +....++..++.+++.++..+|. .+.|+++.+++.+.+.+++.++ .+|+.++.+++.++...|..
T Consensus 554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~ 632 (861)
T 2bpt_A 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG 632 (861)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG
T ss_pred HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh
Confidence 1 12334677899999999999887 6889999999999988877666 89999999999999999999
Q ss_pred ccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhc
Q 001945 581 FAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660 (992)
Q Consensus 581 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~ 660 (992)
|.||++.++|.++..++.+ ..+.|..|+.+++.++...+
T Consensus 633 ~~~~l~~i~~~l~~~l~~~-----------------------------------------~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 633 FEKYLETFSPYLLKALNQV-----------------------------------------DSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCT-----------------------------------------TSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHhccc-----------------------------------------cHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887421 01367889999999999999
Q ss_pred ccccchHHHHHHHHHhcccCC--ChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHH
Q 001945 661 SSYAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVV 738 (992)
Q Consensus 661 ~~~~~~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 738 (992)
..+.||++.+++.+...+.+. +.++|..++.+++.++..++ +.+.++++.+++.+.+.+....++
T Consensus 672 ~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~----------~~~~~~l~~~l~~l~~~~~~~~~~--- 738 (861)
T 2bpt_A 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG----------ADFIPYLNDIMALCVAAQNTKPEN--- 738 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHHHHTCCCSS---
T ss_pred hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHhcCCCC---
Confidence 999999999999998887754 37899999999999888753 235667777777777655322110
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhC---
Q 001945 739 AQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG--- 815 (992)
Q Consensus 739 ~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--- 815 (992)
+. .+ . .+....++.++.++++.++..+|
T Consensus 739 --------------~d---~d-~-------------------------------~~~~~~vr~~~l~~~~~i~~~l~~~~ 769 (861)
T 2bpt_A 739 --------------GT---LE-A-------------------------------LDYQIKVLEAVLDAYVGIVAGLHDKP 769 (861)
T ss_dssp --------------SS---HH-H-------------------------------HHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred --------------CC---hH-H-------------------------------HHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 00 00 0 00111234456666777777776
Q ss_pred CChHHHHHHHHHHHHHhhcCCC---CccchhhHHHHHHHHHhhc-CCchhhcHh-hhHHHHHHhcC---CCChHhHHHHH
Q 001945 816 PHFAPIFAKLFDPLMKFAKSSR---PLQDRTMVVATLAEVARDM-GSPIAAYVD-RVMPLVLKELA---SPDAMNRRNAA 887 (992)
Q Consensus 816 ~~~~~~~~~l~~~l~~~l~~~~---~~~~r~~al~~l~~~~~~~-~~~~~~~~~-~~~~~ll~~l~---~~~~~vr~~a~ 887 (992)
..+.+|+..+++.+.+.+.+.+ ...+|..|+.+++.++... |....+|++ .+++.+++.++ +.+..++++|.
T Consensus 770 ~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 849 (861)
T 2bpt_A 770 EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTAR 849 (861)
T ss_dssp HHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 3466788888888888776531 4568999999999999988 888899999 99999999887 46678999999
Q ss_pred HHHHHHHh
Q 001945 888 FCVGELCK 895 (992)
Q Consensus 888 ~~l~~l~~ 895 (992)
|+++.+.+
T Consensus 850 wa~~~~~~ 857 (861)
T 2bpt_A 850 WAREQQKR 857 (861)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.8e-55 Score=541.32 Aligned_cols=787 Identities=17% Similarity=0.229 Sum_probs=624.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhh-----------hhccc
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKI-----------TGHWA 69 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~--p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i-----------~~~~~ 69 (992)
++.++|+.++|+|+++|++|++.|+++..+ |+++..|++++.++ .++.+|++|+++||+.+ .++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 588999999999999999999999999876 88999999999875 47899999999999986 36799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC--CHHHHHHHHHHHHHhhh
Q 001945 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (992)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~l~~ 147 (992)
.++++.+..||+.+++.|.+ .++.+ +.++.+++.+++.++|...||+++|.+.+.+.++ ++.+|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 55667 9999999999998887679999999999999998 89999999999999998
Q ss_pred hh-hhcccccHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 001945 148 TI-GQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (992)
Q Consensus 148 ~~-~~~~~~~~~~i~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (992)
.. ++.+..+.+.+++.+.+++.++ ++..+|..|++++..++.+.+.......+ .+.+++.+...+.+.+++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE---RHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHH---HHHHHHHHHHHTTCSSHHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHcCCCCHHHHHH
Confidence 75 4557788999999999999983 27899999999999998775321110111 1235555556667778899999
Q ss_pred HHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-------h-------hh-cC-
Q 001945 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-------L-------KK-HK- 288 (992)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-------~-------~~-~~- 288 (992)
+++++..+++..++.+.+++. .+++.++....+. ++.+|..++++|..+++..... . +. ..
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 999999999999988999998 8999888876544 7899999999999998653210 0 00 01
Q ss_pred ---ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHh
Q 001945 289 ---LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (992)
Q Consensus 289 ---~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (992)
++..+++.+++.+.+.++|+++++|..|.++..+++.++...++.+++.+++.+...+++++|+.|++|+.+++.++
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 34567888888888766655677899999999999999999998889999999999999999999999999999999
Q ss_pred hcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH--HhhhhhHHHHHHHhcccCChHHHHHHHHH
Q 001945 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYA 442 (992)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~v~~~a~~~ 442 (992)
+++. +.+.++++.++|.++..++|+++.||..|+++++++++.+++.. .++++.+++.++..+.++ ++||..++++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~a 473 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWA 473 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9886 66778899999999999999999999999999999999876542 467889999999999886 8999999999
Q ss_pred HHHHHHhhc--------------cccccchHHHHHHHHHHhcCC---CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHH
Q 001945 443 LAAFCEDMG--------------EEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (992)
Q Consensus 443 l~~l~~~~~--------------~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 505 (992)
+..+++.++ ..+.||++.+++.|...+.+. +..+|..++++++.++...+..+.+|...+++.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 553 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHH
Confidence 999998865 347899999999999999875 357999999999999999998888999999998
Q ss_pred HHHHHhcc--------Chhh----hHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC--chhhHHHHHHHH
Q 001945 506 LKIFMVLT--------NDED----LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF--SELREYTHGFFS 571 (992)
Q Consensus 506 l~~~l~~~--------~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~r~~~~~~~~ 571 (992)
+.+.+... ++++ ..++..++.+++.++..+|.+.+.||++.+++.++..++... +.+++.++.+++
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Confidence 88877641 1222 235667889999999888745789999999999999888653 478999999999
Q ss_pred HHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHH
Q 001945 572 NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651 (992)
Q Consensus 572 ~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~ 651 (992)
.++...|..|.||++.++|.+...+.... ....|..|+.+
T Consensus 634 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----------------------------------------~~~vr~~a~~~ 673 (876)
T 1qgr_A 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYA----------------------------------------EYQVCLAAVGL 673 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHCT----------------------------------------THHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCcc----------------------------------------hHHHHHHHHHH
Confidence 99999999999999999999988764210 11367788888
Q ss_pred HHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh
Q 001945 652 LGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE 731 (992)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 731 (992)
++.++...+..+.||++.+++.+...+...
T Consensus 674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-------------------------------------------------- 703 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNE-------------------------------------------------- 703 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCT--------------------------------------------------
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhCCc--------------------------------------------------
Confidence 888887777666666655555555444320
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHH
Q 001945 732 DDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFA 811 (992)
Q Consensus 732 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 811 (992)
+.+.+++..++.+++.++..+|.. +.++++.+++.+...+..+. +. + +++..+....++..+.+++..++
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l~~~~~~l~~~~~~~~------~~-~--d~~~~~~~~~~r~~~~~~~~~i~ 773 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGE-FKKYLEVVLNTLQQASQAQV------DK-S--DYDMVDYLNELRESCLEAYTGIV 773 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHTCCC------CT-T--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHhhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHhccC------CC-C--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 122334445555555555555532 34455555555444432210 00 0 00001112346667777888888
Q ss_pred HHhCC----------ChHHHHHHHHHHHHHhhcCCC-CccchhhHHHHHHHHHhhcCC-chhhc-HhhhHHHHHH-hcCC
Q 001945 812 KSMGP----------HFAPIFAKLFDPLMKFAKSSR-PLQDRTMVVATLAEVARDMGS-PIAAY-VDRVMPLVLK-ELAS 877 (992)
Q Consensus 812 ~~~~~----------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~al~~l~~~~~~~~~-~~~~~-~~~~~~~ll~-~l~~ 877 (992)
+.+|. .+.+|++.+++.+.....+.. +..+|..|++++++++++.|. ...+| .+.+++.++. .+++
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~ 853 (876)
T 1qgr_A 774 QGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS 853 (876)
T ss_dssp HHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC
T ss_pred HHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc
Confidence 77764 467788888888777666553 446899999999999999988 77787 6789999999 8999
Q ss_pred CChHhHHHHHHHHHHHHhhcC
Q 001945 878 PDAMNRRNAAFCVGELCKNGG 898 (992)
Q Consensus 878 ~~~~vr~~a~~~l~~l~~~~~ 898 (992)
+++.+|++|++++|.+++..+
T Consensus 854 ~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 854 KTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999997543
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.6e-50 Score=511.33 Aligned_cols=915 Identities=14% Similarity=0.161 Sum_probs=683.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----------CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCC
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p----------~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~ 72 (992)
+++.++|+.+.|+|++.|++|+..|.+..+.+ ..+..++..+. ++++.+|+.|+..|..... .++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TSC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----hCC
Confidence 68999999999999999999999997665432 23556666665 6789999999998877653 456
Q ss_pred HHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC--------CCcchHHHHHHhhc-CCCHHHHHHHHHHHH
Q 001945 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--------EWPDLLPFLFQFSQ-SEQEEHREVALILFS 143 (992)
Q Consensus 73 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~l~~~l~-~~~~~~~~~al~~l~ 143 (992)
++....++..+++.+. ++++.+|..++.+++.++....+.. .|++++|.+.+.+. ++++.++..++.++.
T Consensus 81 ~~~~~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 6788899999999988 4777899999999999998665421 49999999999998 578899999999999
Q ss_pred HhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHH
Q 001945 144 SLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVA 223 (992)
Q Consensus 144 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 223 (992)
.+++..+..+.++.+.+++.+...+.+ +++.||..|+.+++.++...++. .+..+++.+++.+... .++..+
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~----~~~~~l~~l~~~L~~~---~~~~~r 231 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKN---DSMSTT 231 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT---CSSCSC
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhccC---CchhHH
Confidence 999998888889999999999999998 88999999999999999877532 1445566666665432 223566
Q ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhcc
Q 001945 224 VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (992)
Q Consensus 224 ~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (992)
..++.++..++...++.+.++++.+++.++..+.++ ++++|..++.++..+++..+..+.. +++.+++.++..+..
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTY 307 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHChHHHHH--hHHHHHHHHHHHhCC
Confidence 778899999988877788888889999998888755 7889999999999998865544332 677888888877753
Q ss_pred CC--------------------CCC----------CCCCCchHHHHHHHHHHHHHHcch---------------------
Q 001945 304 SN--------------------EAG----------EDDDLAPDRAAAEVIDTMALNLAK--------------------- 332 (992)
Q Consensus 304 ~~--------------------~~~----------~d~~~~~~~~a~~~l~~l~~~~~~--------------------- 332 (992)
.. +++ ++..|.+|..+..+++.++...++
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 10 000 112367788888888776653321
Q ss_pred ------------------------------------------hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHH
Q 001945 333 ------------------------------------------HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE 370 (992)
Q Consensus 333 ------------------------------------------~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~ 370 (992)
..+|.+++.+.+.+++++|+.|.+++.+++.++..++.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence 12344555556668899999999999999999998877
Q ss_pred HHHHhHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 371 WMKEKLESVLHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
.+.++++.+++.++..+.|+++ .+|..++.+++.+.+..+++ +.++++.++|.++..+.+.+.+|+..++.++..++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 7778899999999999999875 89999999999998766554 67789999999999999999999999999999999
Q ss_pred Hhhcc-------ccccchHHHHHHHHHHh--cCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccC----
Q 001945 448 EDMGE-------EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN---- 514 (992)
Q Consensus 448 ~~~~~-------~~~~~~~~l~~~l~~~l--~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~---- 514 (992)
+.++. .+.||++.+++.++..+ .+.+..+|..++.+++.++...|+.+.++++.+++.+.+.+....
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~ 627 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 627 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHH
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHH
Confidence 88765 67899999999999999 667889999999999999999999999999999998877665321
Q ss_pred ---------------------------------hhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCch
Q 001945 515 ---------------------------------DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (992)
Q Consensus 515 ---------------------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (992)
+++..+|..++.+++.++...+.....+++.+++..+...+++++++
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~ 707 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHH
Confidence 12345677888999988877764322233444444444445566788
Q ss_pred hhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCC-CC-c-----------cCCC---CCcchhcccC-CCCCCCc
Q 001945 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD-GS-A-----------VDID---GSDDENINGF-GGVSSDD 624 (992)
Q Consensus 562 ~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~-~~-~-----------~~~~---~~~~~~~~~~-~~~~~~~ 624 (992)
....++.++..++...+..+.++.+.++|.++..+.... .. . .... ....+-+... ..+...+
T Consensus 708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~ 787 (1230)
T 1u6g_C 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 787 (1230)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-
T ss_pred HHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCC
Confidence 889999999999988888887888888887776554221 00 0 0000 0000000000 0000000
Q ss_pred h--hhh-----------------hc----cccce--eeec--chhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhc
Q 001945 625 E--AHC-----------------ER----SVRNI--SVRT--GVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRH 677 (992)
Q Consensus 625 ~--~~~-----------------~~----~~~~~--~~~~--~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 677 (992)
. .+. ++ ....+ .+++ .....+..++.+++.+.... .+.+ .+++.+.+.+.
T Consensus 788 ~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~--~~~~-~~~l~~~~~~~ 864 (1230)
T 1u6g_C 788 TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI--DLSG-QLELKSVILEA 864 (1230)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS--CCCS-CTHHHHHHHHG
T ss_pred CccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccC--CCcc-cccHHHHHHHH
Confidence 0 000 00 00000 0111 11234556777777765542 2333 25567788888
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCccc
Q 001945 678 ASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV 757 (992)
Q Consensus 678 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 757 (992)
+.+.+++||.+|+.+|+.+... .++.++|.+++.+..+ ++.+...+.++.+++...+...+
T Consensus 865 l~~~~~~Vr~aAa~aLg~l~~~-----------------~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~ 925 (1230)
T 1u6g_C 865 FSSPSEEVKSAASYALGSISVG-----------------NLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGL 925 (1230)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHH-----------------THHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTT
T ss_pred hCCCCHHHHHHHHHHhHHHhcc-----------------CHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhH
Confidence 8889999999999999988632 1234456666665443 44567788999999987655555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCC
Q 001945 758 EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR 837 (992)
Q Consensus 758 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 837 (992)
.++...+.+ .|.+... +.++.+...+++|++.++...+ +.++|.+.+.+.+.+
T Consensus 926 ~~~~~~i~~----~L~~~~~----------------~~~~~~r~~~a~~lg~l~~~~~-------~~l~p~l~~~l~~~~ 978 (1230)
T 1u6g_C 926 KPYVENIWA----LLLKHCE----------------CAEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLISGS 978 (1230)
T ss_dssp HHHHHHHHH----HHTTCCC----------------CSSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSSSC
T ss_pred HhhHHHHHH----HHHHHhc----------------CcchhhHHHHHHHHhhhhccCh-------HHHHHHHHHHhcCCC
Confidence 666655544 3433221 0112355678899999988754 357778878887766
Q ss_pred CccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhC
Q 001945 838 PLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFG 917 (992)
Q Consensus 838 ~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 917 (992)
+ ..|..++.++..++...+....++++.+++.+++.+++++++||++|+++++.++++.|+.+.+++..+++.|.....
T Consensus 979 ~-~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~ 1057 (1230)
T 1u6g_C 979 S-YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK 1057 (1230)
T ss_dssp H-HHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhc
Confidence 5 579999999988888777777789999999999999999999999999999999999999899999999998877664
Q ss_pred CCC----------------CChhhHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcC
Q 001945 918 DSE----------------PDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSN 981 (992)
Q Consensus 918 ~~~----------------~~~~~~~n~~~~l~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~ 981 (992)
.+. +.-.+|+||.+|+++++.++++.+++.++++.|++.||- |.|....+|..+.+|+..+|
T Consensus 1058 ~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~ 1135 (1230)
T 1u6g_C 1058 VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD--HYDIKMLTFLMLVRLSTLCP 1135 (1230)
T ss_dssp CCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHSCC
T ss_pred ccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc--hHHHHHHHHHHHHHHHhcCH
Confidence 322 222799999999999999998899999999999999986 58899999999999999999
Q ss_pred cccccC
Q 001945 982 PQLFHQ 987 (992)
Q Consensus 982 ~~~~~~ 987 (992)
+.+++.
T Consensus 1136 ~~~~~~ 1141 (1230)
T 1u6g_C 1136 SAVLQR 1141 (1230)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 888743
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.4e-43 Score=431.42 Aligned_cols=689 Identities=13% Similarity=0.139 Sum_probs=504.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhccc------CCCHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA------KLSPQL 75 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~~~------~~~~~~ 75 (992)
+++.++|+.++|||++.| |+++|++++++|+|+..|++++.++ .+.++|++|+++||+.+.++|. .++++.
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~ 82 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANN 82 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHH
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 689999999999999998 9999999999999999999999764 4789999999999999999998 789999
Q ss_pred HHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc---
Q 001945 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--- 152 (992)
Q Consensus 76 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~--- 152 (992)
+..||+.+++.+.++ ++.+|++++.+++.|++.++| +.||++++.+.+.+++++...+.+++.++..+++.....
T Consensus 83 k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~ 160 (960)
T 1wa5_C 83 VELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRS 160 (960)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCC
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999974 599999999999999999999 599999999999999888889999999999999865421
Q ss_pred ----------ccccHHHHHHHHHH---hcCCCCC--h------HHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHH
Q 001945 153 ----------FRPHFADMQALLLK---CLQDETS--N------RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVS 211 (992)
Q Consensus 153 ----------~~~~~~~i~~~l~~---~l~~~~~--~------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l 211 (992)
+..+.+.+++++.. +++++.. . .++..+++++..+....-.......+..+.+.++..+
T Consensus 161 ~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 240 (960)
T 1wa5_C 161 DELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 12233333344433 3565222 1 2333456666554432212111222333444444333
Q ss_pred HHH---hhcC-C-------HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhh---CCCCChHHHHHHHHHHHHHH
Q 001945 212 RQC---LASG-E-------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQIISWLA 277 (992)
Q Consensus 212 ~~~---l~~~-~-------~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~---~~~~~~~~r~~a~~~l~~l~ 277 (992)
... +..+ + ++++..+++++..+++..+..|.++++.+++.++..+. +...++.++..++++|.+++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 210 0000 0 24577899999999999999899999999999888775 23457889999999999998
Q ss_pred HhhHh--HhhhcCChHHHH-HHHhhhhccCC-------CC---------CCCCCCchHHHHHHHHHHHHHHcchhchHHH
Q 001945 278 KYKYN--SLKKHKLVIPIL-QVMCPLLAESN-------EA---------GEDDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (992)
Q Consensus 278 ~~~~~--~~~~~~~~~~il-~~l~~~l~~~~-------~~---------~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 338 (992)
+.... .++..+++..++ +.+++.|.-.+ +| ++++.+++|.+|..+++.++..+++.+++.+
T Consensus 321 ~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~ 400 (960)
T 1wa5_C 321 RIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF 400 (960)
T ss_dssp TSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHH
Confidence 65432 122124677788 67788775321 11 1244568999999999999999998899999
Q ss_pred HHHHHhhhc------CCChhhHHHHHHHHHHHhhcC---HHHHHH-----hHHHH-HHHHHhhcCCC---ChhHHHHHHH
Q 001945 339 FEFASVSCQ------NASPKYREAAVTAIGIISEGC---AEWMKE-----KLESV-LHIVLGALRDP---EQFVRGAASF 400 (992)
Q Consensus 339 ~~~l~~~l~------~~~~~~r~~al~~l~~i~~~~---~~~~~~-----~l~~i-~~~l~~~l~d~---~~~vr~~a~~ 400 (992)
++++.+.+. +++|+.|++|+++++.++++. ...... .+..+ ...+++.+.|+ ++.||.+|+|
T Consensus 401 l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~ 480 (960)
T 1wa5_C 401 LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (960)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHH
Confidence 999888876 789999999999999998752 211111 23333 34566677777 9999999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh-----------ccccccchHHHHHHHHHHh
Q 001945 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-----------GEEILPFLDPLMGKLLAAL 469 (992)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-----------~~~~~~~~~~l~~~l~~~l 469 (992)
++|++++++.+ +++..+++.++..+.++++.||.+|+.+|.+|++.. ...+.||++.+++.|..++
T Consensus 481 ~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 481 YIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 99999998853 578889999999999999999999999999999742 3458899999999999999
Q ss_pred cCCC---Hh--HHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc--ChhhhHhHHHHHHHHHHHHHhhchhhccC
Q 001945 470 ENSP---RN--LQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRARMEP 542 (992)
Q Consensus 470 ~~~~---~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 542 (992)
+... .+ ..+.++++++.++...++.+.||++.+++.+...+... +.++...+..++++++.++++.+++.+.+
T Consensus 558 ~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 637 (960)
T 1wa5_C 558 LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL 637 (960)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH
Confidence 8751 22 44789999999999999999999999999988888653 22344556678999999998877777888
Q ss_pred ChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHH--hhccCCCCCccCCCCCcchhcccCCCC
Q 001945 543 ILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF--SSCNLDDGSAVDIDGSDDENINGFGGV 620 (992)
Q Consensus 543 ~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (992)
+.+.+++.+...++.+..++.++++..++.+.... ..+.+|+..++|.++ ......
T Consensus 638 ~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~--------------------- 695 (960)
T 1wa5_C 638 LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK--------------------- 695 (960)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT---------------------
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC---------------------
Confidence 88888888888777666778999999999999887 789999999999887 322110
Q ss_pred CCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 001945 621 SSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAA 700 (992)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (992)
+ .-...+.+|..++...+..+.. ++.++..+.+++..... +..++.+++.++..+
T Consensus 696 -------------------~---~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~ 750 (960)
T 1wa5_C 696 -------------------G---NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLI 750 (960)
T ss_dssp -------------------T---THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHS
T ss_pred -------------------C---CchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHC
Confidence 0 0123556676666555555443 34445444444443322 367788887777754
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCC
Q 001945 701 HAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGY 754 (992)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 754 (992)
+ ...+.++++.+++.++..+..+...+.+...+..+..++-.+|+
T Consensus 751 ~---------~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 795 (960)
T 1wa5_C 751 D---------MNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGS 795 (960)
T ss_dssp C---------HHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred C---------HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCH
Confidence 3 12256688888888888776554444443444455444444453
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.7e-41 Score=418.95 Aligned_cols=715 Identities=16% Similarity=0.171 Sum_probs=519.6
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
+++.++++.+ .++|++.|++|+++|++++++|++|..+..++.++.++.+|++|+++|++.+.++|..++++.+..+|+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 6788999884 578999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred HHHHHHhhc--CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcC-----CCHHHHHHHHHHHHHhhhhh-----
Q 001945 82 SLIESITLE--HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-----EQEEHREVALILFSSLTETI----- 149 (992)
Q Consensus 82 ~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~-----~~~~~~~~al~~l~~l~~~~----- 149 (992)
.+++.+... .++.+|++++.+++.|+++++|. .||++++.+.+.+++ ++...+..++.+|..+++..
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~ 182 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL 182 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC
Confidence 999999863 26999999999999999999995 799999999999876 35668899999999998754
Q ss_pred --------hhcccccHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHhhc-------------------------------
Q 001945 150 --------GQTFRPHFADMQALLLKCLQDETSN-RVRIAALKAIGSFLE------------------------------- 189 (992)
Q Consensus 150 --------~~~~~~~~~~i~~~l~~~l~~~~~~-~vr~~a~~~l~~l~~------------------------------- 189 (992)
.+.+..+++.+++++..++.+..+. .++..+++|+.+++.
T Consensus 183 ~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~ 262 (963)
T 2x19_B 183 PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEA 262 (963)
T ss_dssp ---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHH
Confidence 2234567788888888888763222 366666666654432
Q ss_pred ------ccCChhhHHHHHhhHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHhcCCccchH------HHHHHHHHHHHH
Q 001945 190 ------FTNDGAEVVKFREFIPSILNVS---RQCLASGEEDVAVIAFEIFDELIESPAPLLG------DSVKSIVHFSLE 254 (992)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~ll~~l---~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~li~~~~~ 254 (992)
....+.....+..+++.++... ...+..++.+.....++.+..+++..+..+. +++..+++.++.
T Consensus 263 l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~ 342 (963)
T 2x19_B 263 IVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMF 342 (963)
T ss_dssp HHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHH
Confidence 1110000111223333333321 1122334566667777888887765554443 567778888888
Q ss_pred HhhCC---CCChHHHHHHHHHHHHHHHhh--------HhHh-hhcCChHHHHHHHhhhhccCCCCC----C-C--CCC-c
Q 001945 255 VSSSH---NLEPNTRHQAIQIISWLAKYK--------YNSL-KKHKLVIPILQVMCPLLAESNEAG----E-D--DDL-A 314 (992)
Q Consensus 255 ~~~~~---~~~~~~r~~a~~~l~~l~~~~--------~~~~-~~~~~~~~il~~l~~~l~~~~~~~----~-d--~~~-~ 314 (992)
+..++ ..++++...++++|..+++.. +... .-.+++..+++.++..+...++++ + | +++ .
T Consensus 343 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~ 422 (963)
T 2x19_B 343 CTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRI 422 (963)
T ss_dssp HHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHH
Confidence 77653 236678889999999988721 1111 011366677788888775433211 1 1 122 3
Q ss_pred hHHHHHHHHHHHHHHcchhchHHHHHHHHhhh----cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC
Q 001945 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (992)
.|+.+.+++..++...+..+++.+++.+...+ .+.+|+.|++++++++.+++++.+...++++.+++.+. .+.++
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~ 501 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCC
Confidence 47778889999999888888899999888887 77899999999999999999986544456777888544 45567
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhc
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 470 (992)
++.||..+++++|++++++... .++++.+++.++..+++ ++|+..|+.++.++++.++..+.||++.+++.+...+.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999999987542 36889999999999976 78999999999999999998899999999999999988
Q ss_pred CC--CHhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHhc----c-ChhhhHhHHHHHHHHHHHHHhhchh----
Q 001945 471 NS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL----T-NDEDLRSRARATELLGLVAESVGRA---- 538 (992)
Q Consensus 471 ~~--~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~----~-~~~~~~~~~~~~~~l~~l~~~~~~~---- 538 (992)
.. +...+..++++++.++...+ +.+.+|++.+++.+.+.+.. . +.+....+...+++++.+++.++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 63 57899999999999998776 78889999988877766542 2 2222233457889999999887631
Q ss_pred -----------------hccCChHHHHHHHHhccC--CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCC
Q 001945 539 -----------------RMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (992)
Q Consensus 539 -----------------~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~ 599 (992)
.+.++.+.+++.+.+.++ ..++++.+.++.+++.++..+|+.+.||+|.+++.++......
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 659 DHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC
Confidence 123345556665554443 2356899999999999999999999999999999988654310
Q ss_pred CCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh--cccccchHHHHHHHHHh-
Q 001945 600 DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT--KSSYAPFLEESLKILVR- 676 (992)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~--~~~~~~~~~~~~~~l~~- 676 (992)
.....+.+++.++... +..+.|++..++..+..
T Consensus 739 --------------------------------------------~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~ 774 (963)
T 2x19_B 739 --------------------------------------------PQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSV 774 (963)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHH
T ss_pred --------------------------------------------CccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 0023556666666633 33355666555444333
Q ss_pred ---ccc-C--CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 001945 677 ---HAS-Y--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIIN 750 (992)
Q Consensus 677 ---~~~-~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 750 (992)
.+. + .++++|...+..+..++..+...+-. .+ . .+..+++.+...+. ..++++...++..+.+++.
T Consensus 775 ~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~---~~-~---~~~~i~~~~~~~l~-~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 775 TLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC---ER-L---DVKAVFQCAVLALK-FPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC---TT-S---CHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC---Cc-c---cHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 332 2 36899999999999998875533221 11 1 15556666666665 4688888899999999887
Q ss_pred HhC-Cccc----HHHHHHHHHHHHHHHhh
Q 001945 751 DYG-YMAV----EPYMSRLVDATLLLLRE 774 (992)
Q Consensus 751 ~~g-~~~~----~~~~~~l~~~l~~~l~~ 774 (992)
..+ .... .++...++..++..+.+
T Consensus 847 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 875 (963)
T 2x19_B 847 RCGEVESVGKVVQEDGRMLLIAVLEAIGG 875 (963)
T ss_dssp GTTSSCHHHHHTTTSHHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 654 1111 23455555555555543
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-42 Score=424.58 Aligned_cols=689 Identities=13% Similarity=0.138 Sum_probs=478.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ 82 (992)
+++.++++.+.+||++.|++|+++|++++++|++|..+.+++.++.++++|.+|+++|++.+.++|..++++.+..+|+.
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHhhcC--CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC------CHHHHHHHHHHHHHhhhhhh----
Q 001945 83 LIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE------QEEHREVALILFSSLTETIG---- 150 (992)
Q Consensus 83 ll~~l~~~~--~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~------~~~~~~~al~~l~~l~~~~~---- 150 (992)
+++.+.... ++.||++++.+++.|+++++| .||++++.+.+.++++ ++..+..++.+|..+++.+.
T Consensus 87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCc
Confidence 999998643 689999999999999999998 8999999999999775 56788999999999987532
Q ss_pred --------hcccccHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHHHhhc--ccCCh-------------------
Q 001945 151 --------QTFRPHFADMQALLLKCLQDETSN-------RVRIAALKAIGSFLE--FTNDG------------------- 194 (992)
Q Consensus 151 --------~~~~~~~~~i~~~l~~~l~~~~~~-------~vr~~a~~~l~~l~~--~~~~~------------------- 194 (992)
+.+..+++.+++++.+++++..++ .++..+++|+..++. +.+..
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~~~~~ 244 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWP 244 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhhhccc
Confidence 234456777888887777532222 688888888887666 22211
Q ss_pred -------------h---------------------hHHHHHhhHHHHHHHHHHH---hhcCC---HHHHHHHHHHHHHHh
Q 001945 195 -------------A---------------------EVVKFREFIPSILNVSRQC---LASGE---EDVAVIAFEIFDELI 234 (992)
Q Consensus 195 -------------~---------------------~~~~~~~~~~~ll~~l~~~---l~~~~---~~~~~~~~~~l~~l~ 234 (992)
. ....+..++|.++...... +.+++ ++.....++.+..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~ 324 (971)
T 2x1g_F 245 CIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV 324 (971)
T ss_dssp SCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH
T ss_pred cccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 0 0011223334444433222 12334 266777788888887
Q ss_pred cCCccchH-----------HHHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHhhH--------hHhh--hcCCh
Q 001945 235 ESPAPLLG-----------DSVKSIVHFSLEVSSSH---NLEPNTRHQAIQIISWLAKYKY--------NSLK--KHKLV 290 (992)
Q Consensus 235 ~~~~~~~~-----------~~l~~li~~~~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~--------~~~~--~~~~~ 290 (992)
+.....+. +++..+++.++.+..++ ..+++++..++++|..+++... .... -.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 325 ERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp HHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 66555443 56677788888776542 2367899999999999876221 0111 11356
Q ss_pred HHHHHHHhhhhccCCCCCCCCC---------CchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC-----CChhhHHH
Q 001945 291 IPILQVMCPLLAESNEAGEDDD---------LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN-----ASPKYREA 356 (992)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~d~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~-----~~~~~r~~ 356 (992)
..+++.++..+...++++ .++ .+.|+.+.+++..++...++.+++.+++.+.+.+.+ .+|+.|++
T Consensus 405 ~~ll~~l~~~~~~p~~~~-~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 405 AHLTRILVRKSEQPDEKS-LAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEA 483 (971)
T ss_dssp HHHHHHHHHHTSCCCTTT-TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCccc-ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 677777777775433221 111 145677888999888888888889999988887765 79999999
Q ss_pred HHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC--CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChH
Q 001945 357 AVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (992)
Q Consensus 357 al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 434 (992)
++++++.+++++.+...++++.+++ ++..+. |+++.||..+++++|++++++.+. .++++.+++.++..+ + ++
T Consensus 484 al~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~ 558 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SS 558 (971)
T ss_dssp HHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SS
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hH
Confidence 9999999999988766677888888 444454 679999999999999999998653 368899999999999 4 78
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC--CCHhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHh
Q 001945 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMV 511 (992)
Q Consensus 435 v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 511 (992)
|+..|+.++.++++.++..+.||++.+++.+...+.. .+.+.+..++++++.++...+ +...+|+..+++.+.+.+.
T Consensus 559 v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 559 MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988999999999999999998 467899999999999998765 6667777776555544433
Q ss_pred ----cc--ChhhhHhHHHHHHHHHHHHHhhch------------hhccCChHHHHHHHHhccC--CCCchhhHHHHHHHH
Q 001945 512 ----LT--NDEDLRSRARATELLGLVAESVGR------------ARMEPILPPFVEAAISGFG--LEFSELREYTHGFFS 571 (992)
Q Consensus 512 ----~~--~~~~~~~~~~~~~~l~~l~~~~~~------------~~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~~~ 571 (992)
.. +++.......++++++.+.+.++. +.+.++.+.+++.+...++ .++.++.+.++.+++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~ 718 (971)
T 2x1g_F 639 AICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMK 718 (971)
T ss_dssp HHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 22 111112223455666666655542 2345556667776655543 235689999999999
Q ss_pred HHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHH
Q 001945 572 NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651 (992)
Q Consensus 572 ~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~ 651 (992)
+++..+|+++.||+|.+++.++..++... . ..++++
T Consensus 719 ~~~~~~~~~~~p~l~~~~~~l~~~~~~~~-------------------------------------------~-~~~l~l 754 (971)
T 2x1g_F 719 HAITNLRSSFQPMLQDLCLFIVASFQTRC-------------------------------------------C-APTLEI 754 (971)
T ss_dssp HHHHHHHC--CTHHHHHHHHHHHHCC--C-------------------------------------------C-HHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHHHhcCC-------------------------------------------c-hHHHHH
Confidence 99999999999999999999997664210 0 236677
Q ss_pred HHHHHHHhccc--ccchHHHHH----HHHHhcccC-------CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHH-
Q 001945 652 LGLFALHTKSS--YAPFLEESL----KILVRHASY-------FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREI- 717 (992)
Q Consensus 652 l~~~~~~~~~~--~~~~~~~~~----~~l~~~~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~- 717 (992)
++.++..+|.. +.+.+.+++ ..+...+.. .+++++...+..+..++......+-. . +.
T Consensus 755 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~---s-----~~~ 826 (971)
T 2x1g_F 755 SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED---K-----TLA 826 (971)
T ss_dssp HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC---T-----TSC
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC---C-----ccc
Confidence 77777766552 333333333 333333322 26688888888888887754433221 1 23
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHh
Q 001945 718 LDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDY 752 (992)
Q Consensus 718 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 752 (992)
+..+++..+..+.. .++....+++..+..++...
T Consensus 827 l~~i~~~~~~~l~~-~~~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 827 YDRLVFYAQRGMTL-PESGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp HHHHHHHHHHHHTS-SCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhcC
Confidence 45566665555543 35556667778888777663
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=6.8e-40 Score=414.20 Aligned_cols=860 Identities=15% Similarity=0.190 Sum_probs=619.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC
Q 001945 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW 116 (992)
Q Consensus 37 ~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~ 116 (992)
+..++.-+. ++++.+|..|..-|.+.+......+++.....+...+++.|. ++++.+|+.++.+++.++....+ ..+
T Consensus 8 l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 444555443 678999999998888887766556677777888888999988 68999999999999999976533 467
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc------ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (992)
+.+++.+...+.+++..+|..+..+++.++...+.. ...+++.+++.+..++.+++++.+|..|+.++..++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 889999999998888889999999999999877643 34478899999999998437899999999999999865
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 001945 191 TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (992)
Q Consensus 191 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~li~~~~~~~~~~~~~~~~r~~a 269 (992)
.+.. +..+++.++..+...+.++++.++..++.++..++...+. ++...++.+++.+.. .. +...|..+
T Consensus 165 ~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~----~~-~~~~r~~a 234 (1230)
T 1u6g_C 165 QGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK----ND-SMSTTRTY 234 (1230)
T ss_dssp TCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH----TC-SSCSCTTH
T ss_pred hHhH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc----CC-chhHHHHH
Confidence 5332 2345677888888888888889999999999999876543 344445555554432 21 24678888
Q ss_pred HHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchh---chHHHHHHHHhhh
Q 001945 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSC 346 (992)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l 346 (992)
++++..+++..+..+. +++..+++.++..+.+. ++..|..+..++..++..+++. .++.+++.+...+
T Consensus 235 ~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~-------~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVD-------DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp HHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSC-------CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHh
Confidence 9999999887665443 37788899888888642 2368999999999999988743 5566666654433
Q ss_pred c-------------------------------------CCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC
Q 001945 347 Q-------------------------------------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (992)
Q Consensus 347 ~-------------------------------------~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (992)
. +..|++|.+|+.+++.++...++.+.++++.++|.+...+.|
T Consensus 306 ~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 306 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp CCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred CCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 2 124889999999999999876666778888999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhc-------------------HHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 390 PEQFVRGAASFALGQFAEYLQ-------------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~-------------------~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
+++.||..++.+++.++...+ ..+..+++.+++.+.+.+.++++++|..++.+++.++..+
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999998887543 2345677889999999999999999999999999999998
Q ss_pred ccccccchHHHHHHHHHHhcCCC--HhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHH
Q 001945 451 GEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATEL 527 (992)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 527 (992)
+..+.+|++.+++.+...+.+.. ..++..++..++.+....+ +.+.+|++.++|.+...+.. ....++..++.+
T Consensus 466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d---~~~~v~~~al~~ 542 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD---PFYKITSEALLV 542 (1230)
T ss_dssp TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC---SSHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc---cchHHHHHHHHH
Confidence 87788999999999999999875 4899999999999887665 45889999999999887753 344566678899
Q ss_pred HHHHHHhhch------hhccCChHHHHHHHHhcc--CCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCC
Q 001945 528 LGLVAESVGR------ARMEPILPPFVEAAISGF--GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (992)
Q Consensus 528 l~~l~~~~~~------~~~~~~~~~i~~~l~~~l--~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~ 599 (992)
++.++..+|+ ..+.||++.+++.++..+ .+.++.+|..++.+++.++...|..+.++++.+++.+...+...
T Consensus 543 l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e 622 (1230)
T 1u6g_C 543 TQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622 (1230)
T ss_dssp HHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc
Confidence 9999988775 367889999999998888 56678899999999999999999999999999999998766411
Q ss_pred CCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHhcc
Q 001945 600 DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT-KSSYAPFLEESLKILVRHA 678 (992)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~ 678 (992)
..|..++.+++.++... +..+.+|++.+++.+...+
T Consensus 623 -------------------------------------------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l 659 (1230)
T 1u6g_C 623 -------------------------------------------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 659 (1230)
T ss_dssp -------------------------------------------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 14567888888876543 3357789999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccH
Q 001945 679 SYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE 758 (992)
Q Consensus 679 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 758 (992)
.+.+..+|..++.++..++...... ...+ .+..++..+...+ ++.|.+....+++++..+++..+.. ..
T Consensus 660 ~~~~~~~r~~a~~al~~l~~~~~~~-----~~~~----~v~~~l~~ll~ll-~~~D~~~~~~~~~~L~~l~~~~~~~-~~ 728 (1230)
T 1u6g_C 660 RKNQRALKLGTLSALDILIKNYSDS-----LTAA----MIDAVLDELPPLI-SESDMHVSQMAISFLTTLAKVYPSS-LS 728 (1230)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHCCTT-----CCHH----HHHHHHTTCGGGS-CTTCHHHHHHHHHHHHHHTTSCGGG-GG
T ss_pred HhCCHHHHHHHHHHHHHHHhccccc-----CCHH----HHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHHhCchh-HH
Confidence 8889999999999999998764211 0111 2222222222211 2345566666777777776543321 11
Q ss_pred HHHHHHHHHHHHHHh--------------------hhhh-----------hcCCCCCCCCCCcccccchHHHHHHHHhHH
Q 001945 759 PYMSRLVDATLLLLR--------------------EEST-----------CQQPDNDSDIEDDDDTAHDEVIMDAVSDLL 807 (992)
Q Consensus 759 ~~~~~l~~~l~~~l~--------------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 807 (992)
++...+++.+...+. .... .......++. ...++.....++.|+
T Consensus 729 ~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~-----~~~~~~~~~~~a~~i 803 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST-----ALTHKQSYYSIAKCV 803 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC---------CCHHHHHHHHHHH
T ss_pred HhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCC-----ccccchhhHHHHHHH
Confidence 111111111111110 0000 0000000000 000011111222222
Q ss_pred HHHHHHhCC----------------------------------------------------------------------C
Q 001945 808 PAFAKSMGP----------------------------------------------------------------------H 817 (992)
Q Consensus 808 ~~l~~~~~~----------------------------------------------------------------------~ 817 (992)
+.+....|+ .
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l 883 (1230)
T 1u6g_C 804 AALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSI 883 (1230)
T ss_dssp HHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHH
Confidence 222221111 1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcC-CchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhh
Q 001945 818 FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMG-SPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKN 896 (992)
Q Consensus 818 ~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~ 896 (992)
+...++.++|.+++.+.+. ...|..++..+.+++...+ ....|+.+.+++.++..+.+.+..+|..++.|+|.++..
T Consensus 884 ~~~~~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~ 961 (1230)
T 1u6g_C 884 SVGNLPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI 961 (1230)
T ss_dssp HHHTHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS
T ss_pred hccCHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhcc
Confidence 1122334566666666543 2456677777777776653 447788999999999999888888999999999999988
Q ss_pred cCcchhhHHHH----------------------------------HHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCC
Q 001945 897 GGESALKYYGD----------------------------------ILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQ 942 (992)
Q Consensus 897 ~~~~~~~~~~~----------------------------------~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~ 942 (992)
.++.+.|.+.+ +++.+...+. +.+..+|++++.+++.+++..|.
T Consensus 962 ~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~--d~~~~vr~~a~~~l~~~~~~~~~ 1039 (1230)
T 1u6g_C 962 DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE--DPDLNVRRVALVTFNSAAHNKPS 1039 (1230)
T ss_dssp SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHS--SSSTHHHHHHHHHHHHHHHHCGG
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhcChH
Confidence 76555443321 1111112222 34568999999999999999998
Q ss_pred CCC--hhhHHHHHHhhCCCCCcH-----------------HhhHHHHHHHHHHHhhcCccc
Q 001945 943 SIP--LNQVLPVLLKVLPLKEDF-----------------EESMAVYNCISTLVLSSNPQL 984 (992)
Q Consensus 943 ~~~--~~~~l~~~l~~lp~~~d~-----------------~e~~~~~~~l~~l~~~~~~~~ 984 (992)
.+. ++.++|.+++.++.+.+. +..+.+++.+..++..+...+
T Consensus 1040 ~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i 1100 (1230)
T 1u6g_C 1040 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100 (1230)
T ss_dssp GTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred hHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 773 789999999988776552 789999999999999876543
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.2e-39 Score=395.71 Aligned_cols=751 Identities=13% Similarity=0.130 Sum_probs=561.2
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHcccCC------CCCCcch
Q 001945 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP------AGEWPDL 119 (992)
Q Consensus 47 ~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~------~~~~~~l 119 (992)
+++.++|+.|...|++.- .+....+...|++.+.++ .+..+|..++..+........+ ...|+.+
T Consensus 12 s~d~~~r~~A~~~L~~~~--------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l 83 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA--------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHH--------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccC
Confidence 568899999999997742 123456777888888754 4688999999999987643211 1357665
Q ss_pred HHH--------HHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHhhc
Q 001945 120 LPF--------LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLE 189 (992)
Q Consensus 120 l~~--------l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~vr~~a~~~l~~l~~ 189 (992)
.+. +++.+.++++.+ ..+..+++.++..... ..+++++++.+...+.+ + ++.+|..++.++..++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~-~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 84 DANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTN-PNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHH
Confidence 555 777787777667 8888999998876432 35678899999999988 6 89999999999999998
Q ss_pred ccCChhhHHHHHhhHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHhcCCccchHHH--HHHHHHHHHHHhhCCCCChHH
Q 001945 190 FTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDELIESPAPLLGDS--VKSIVHFSLEVSSSHNLEPNT 265 (992)
Q Consensus 190 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~li~~~~~~~~~~~~~~~~ 265 (992)
.... ..+...++.++..+.+.+.++ +++++..+++++..++...+..+... ...+++.+.....+ .++++
T Consensus 160 ~~~~----~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~--~~~~v 233 (876)
T 1qgr_A 160 DIDP----EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC--PDTRV 233 (876)
T ss_dssp HSCH----HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC--SSHHH
T ss_pred hcCH----hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC--CCHHH
Confidence 7531 125677788888888888766 57889999999999876433222111 12355555555443 37889
Q ss_pred HHHHHHHHHHHHHhhHhHhhhcCChH-HHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc--------------
Q 001945 266 RHQAIQIISWLAKYKYNSLKKHKLVI-PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-------------- 330 (992)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~-------------- 330 (992)
|..+++++..+++..+..+.. ++. .+++.++..+.+. +...+..+.+++..++...
T Consensus 234 r~~a~~~l~~l~~~~~~~~~~--~~~~~l~~~~~~~~~~~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 234 RVAALQNLVKIMSLYYQYMET--YMGPALFAITIEAMKSD-------IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHH--HHTTTHHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence 999999999999876655433 344 5666666555332 2267778887777776542
Q ss_pred -----c-----hhchHHHHHHHHhhhc-------CCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChh
Q 001945 331 -----A-----KHVFPPVFEFASVSCQ-------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (992)
Q Consensus 331 -----~-----~~~~~~~~~~l~~~l~-------~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (992)
. +..++.+++.+.+.+. +++|..|.+|..+++.++..+++ ..++.+++.+...+.|+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHH
T ss_pred CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChH
Confidence 0 1122445555555443 46799999999999999987663 34678899999999999999
Q ss_pred HHHHHHHHHHHhHhhhc-HHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc--cccchHHHHHHHHHHhc
Q 001945 394 VRGAASFALGQFAEYLQ-PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALE 470 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~ 470 (992)
+|.+|+++++.+++..+ ..+.++++.++|.++..+.|+++.||..|+++++++++..+.. ..+|++.+++.+...+.
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence 99999999999999876 3466788999999999999999999999999999999988765 35899999999999998
Q ss_pred CCCHhHHHHHHHHHHHHHHHhh--------------ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhc
Q 001945 471 NSPRNLQETCMSAIGSVAAAAE--------------QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (992)
Q Consensus 471 ~~~~~v~~~a~~~l~~l~~~~~--------------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 536 (992)
+. ..+|..++.+++.++...+ +.+.||++.++|.+.+.+...+.+...+|..++++++.++..+|
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 85 8899999999999998876 35889999999999999876533344577789999999998887
Q ss_pred hhhccCChHHHHHHHHhccC-----------CCC----chhhHHHHHHHHHHHHHcc-cCccCchhhhhHHHHhhccCCC
Q 001945 537 RARMEPILPPFVEAAISGFG-----------LEF----SELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDD 600 (992)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~-----------~~~----~~~r~~~~~~~~~i~~~~~-~~~~~~l~~i~~~l~~~~~~~~ 600 (992)
. .+.+++..+++.+++.+. +++ ++++..++.+++.++..+| ..+.||++.++|.++..++...
T Consensus 541 ~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 541 K-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619 (876)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC----
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc
Confidence 6 566777777777765443 222 4578889999999999999 9999999999999998875320
Q ss_pred CCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccC
Q 001945 601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASY 680 (992)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 680 (992)
+ . ...+..++.+++.++...+..+.||++.+++.+...+.+
T Consensus 620 ~-------------------------------~--------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 620 G-------------------------------S--------GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp --------------------------------C--------CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred C-------------------------------C--------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 0 0 125778999999999999999999999988888777765
Q ss_pred C-ChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHH
Q 001945 681 F-HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEP 759 (992)
Q Consensus 681 ~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 759 (992)
. +.++|..|+.+++.++..+ | ..+.+
T Consensus 661 ~~~~~vr~~a~~~l~~l~~~~----------------------------------------------------~-~~~~~ 687 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLCRAL----------------------------------------------------Q-SNIIP 687 (876)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH----------------------------------------------------G-GGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHH----------------------------------------------------H-Hhhhh
Confidence 4 6777777777666665542 1 11223
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCC-
Q 001945 760 YMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRP- 838 (992)
Q Consensus 760 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~- 838 (992)
++..+++.+...+.... .+..+...+..+++.++...|+.|.+|++.++|.+.+.+.....
T Consensus 688 ~~~~i~~~l~~~l~~~~------------------~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~ 749 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNEN------------------VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDK 749 (876)
T ss_dssp HHHHHHHHHHHHHTCTT------------------SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCT
T ss_pred hHHHHHHHHHHHhCCcc------------------ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCC
Confidence 44555555555553310 00113446778889999999999999999999999988764421
Q ss_pred ---------ccchhhHHHHHHHHHhhcCC----------chhhcHhhhHHHHHHhcCCC--ChHhHHHHHHHHHHHHhhc
Q 001945 839 ---------LQDRTMVVATLAEVARDMGS----------PIAAYVDRVMPLVLKELASP--DAMNRRNAAFCVGELCKNG 897 (992)
Q Consensus 839 ---------~~~r~~al~~l~~~~~~~~~----------~~~~~~~~~~~~ll~~l~~~--~~~vr~~a~~~l~~l~~~~ 897 (992)
...|..++.+++.+++..|. ...+|++.+++.+.....++ +..+|..|+.++|.++...
T Consensus 750 ~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 750 SDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 14677888888888877653 45678899998777776776 7899999999999999999
Q ss_pred Cc-chhhH-HHHHHHhhhh-hhCCCCCChhhHhhHHHHHHHHHHhCC
Q 001945 898 GE-SALKY-YGDILRGLYP-LFGDSEPDDAVRDNAAGAVARMIMVNP 941 (992)
Q Consensus 898 ~~-~~~~~-~~~~l~~l~~-~l~~~~~~~~~~~n~~~~l~~l~~~~~ 941 (992)
|. .+.+| ...+++.+.. .+.+ .+..+|.+|+.++|.+.+..+
T Consensus 830 ~~~~~~~~~~~~~i~~ll~~~l~~--~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 830 GKDVLKLVEARPMIHELLTEGRRS--KTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp CTHHHHHHHTSHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhcHHHHHHHHHHhhc--CCHhHHHHHHHHHHHHHHhhc
Confidence 88 77777 4566666655 6643 457899999999999987654
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.3e-38 Score=389.11 Aligned_cols=756 Identities=13% Similarity=0.134 Sum_probs=501.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (992)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~ 81 (992)
.+++.++++.+++|+++.|++|+++|++++++|+++..+.+++.++.++.+|++|+++||+.+.++|..++++.+..||+
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 46889999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHhhcC--------CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh---
Q 001945 82 SLIESITLEH--------SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--- 150 (992)
Q Consensus 82 ~ll~~l~~~~--------~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~--- 150 (992)
.+++.+.+.. ++.+|++++.+++.|++.++| +.||++++.+.+.++ .+...+..++.+|..+++.+.
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998643 478999999999999999999 599999999999997 556678889999999887654
Q ss_pred -------------hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH--------------------
Q 001945 151 -------------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV-------------------- 197 (992)
Q Consensus 151 -------------~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-------------------- 197 (992)
+.+..+++.+++.+..++.+.++..++..+++|+.+++.|.+.....
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~ 252 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRA 252 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHH
Confidence 22445577788888888876467889999999998888776522100
Q ss_pred ----------------------HHHHhhHHHHHHHHHH-----------Hh---hcCCHHHHHHHHHHHHHHhcCC----
Q 001945 198 ----------------------VKFREFIPSILNVSRQ-----------CL---ASGEEDVAVIAFEIFDELIESP---- 237 (992)
Q Consensus 198 ----------------------~~~~~~~~~ll~~l~~-----------~l---~~~~~~~~~~~~~~l~~l~~~~---- 237 (992)
..+..+++.+++.+.. .. .+.+.+.....++.+..+++..
T Consensus 253 ~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp HHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111222222211 00 0112233334444444443321
Q ss_pred --ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh---HhH-hhhcCChHHHHHHHhhhhccCCCCC---
Q 001945 238 --APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YNS-LKKHKLVIPILQVMCPLLAESNEAG--- 308 (992)
Q Consensus 238 --~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~-~~~~~~~~~il~~l~~~l~~~~~~~--- 308 (992)
++.+.+++..+++.++.+...+ +++++..++++|..+++.. +.. ....+++..+++.+++.|...++++
T Consensus 333 ~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred cCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 1224566777888888877665 7889999999999998731 111 1111366778888888876533211
Q ss_pred ------------CCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc--CCChhhHHHHHHHHHHHhhcCHHHHH-
Q 001945 309 ------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ--NASPKYREAAVTAIGIISEGCAEWMK- 373 (992)
Q Consensus 309 ------------~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~--~~~~~~r~~al~~l~~i~~~~~~~~~- 373 (992)
++|+|..++++.+++..++...+..+++.+.+.+.+.+. +.+|+.|+++++++|.+++++.+...
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhH
Confidence 112345677899999999988888888999999888875 47899999999999999998765543
Q ss_pred HhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 374 EKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 374 ~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.+++.+++.+..... |+++.||..+++++|++++++... .+++..+++.++..+.+++++|+..||.++.++++
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 347788887776432 467888888999999999987543 46789999999999999999999999999999999
Q ss_pred hhccccc--------cchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh--ccCcccHHHHHHHHHHHHhc----c-
Q 001945 449 DMGEEIL--------PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVL----T- 513 (992)
Q Consensus 449 ~~~~~~~--------~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~l~~~l~~----~- 513 (992)
.++..+. ||++.+++.+..++...+.+-....+++++.++...+ +...+|+..+++.+.+.+.. .
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST 649 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9876654 9999999999999988777777889999999998876 35677888877765443321 0
Q ss_pred ---C---hhh-hHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc-----cCc
Q 001945 514 ---N---DED-LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-----DGF 581 (992)
Q Consensus 514 ---~---~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~-----~~~ 581 (992)
+ +++ ...-...+.|++.++.++|+ .|.|++..++..++..++ .....+.......| ..+
T Consensus 650 ~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~-~f~p~~~~i~~~~l~~~~--------~~~~~~~~~~~~~g~~~~~~p~ 720 (1049)
T 3m1i_C 650 ANPTLLLDSETVKIIANIIKTNVAVCTSMGA-DFYPQLGHIYYNMLQLYR--------AVSSMISAQVAAEGLIATKTPK 720 (1049)
T ss_dssp HCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGGSHH
T ss_pred hchhhhcCHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHccCchhhhhHH
Confidence 0 111 11112346677777777776 676777666654432111 00111111111111 112
Q ss_pred cCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh--
Q 001945 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT-- 659 (992)
Q Consensus 582 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~-- 659 (992)
..++..+.|.+...+. .+....
T Consensus 721 ~~~~~~~~~~l~~ll~--------------------------------------------------------~~~~~~~~ 744 (1049)
T 3m1i_C 721 VRGLRTIKKEILKLVE--------------------------------------------------------TYISKARN 744 (1049)
T ss_dssp HHHHHHHHHHHHHHHH--------------------------------------------------------HHHHHCSC
T ss_pred HHHHHHHHHHHHHHHH--------------------------------------------------------HHHHhCCC
Confidence 2333444444433221 111111
Q ss_pred -cccccchHHHHHHHHHhcccCCChhHH-HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh--CChH
Q 001945 660 -KSSYAPFLEESLKILVRHASYFHEDVR-YQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE--DDDK 735 (992)
Q Consensus 660 -~~~~~~~~~~~~~~l~~~~~~~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 735 (992)
+....||+++++..+..-........| ..++.++..++..++.. -...+..++..++...+..+.+ +.++
T Consensus 745 l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~------~~~~l~~i~~~l~~~~~~~i~~~~~~~p 818 (1049)
T 3m1i_C 745 LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM------IPQGVILILQSVFECTLDMINKDFTEYP 818 (1049)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGG------CHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHhcchhhCH
Confidence 111345555555554443211111111 24566666676665421 1233445555555555555543 4579
Q ss_pred HHHHHHHHHHHHHHHHhCCccc---HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHH
Q 001945 736 DVVAQACTSIVEIINDYGYMAV---EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAK 812 (992)
Q Consensus 736 ~~~~~~~~~l~~~~~~~g~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 812 (992)
+++.+.+..++.++..+....+ +..+..+++.....+... +..+..++.+++..+.+
T Consensus 819 d~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~--------------------~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN--------------------NRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCC--------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCC--------------------CchHHHHHHHHHHHHHH
Confidence 9999999999999987653322 223566666655555432 12333455556666555
Q ss_pred HhC---C-Ch-----HHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHH
Q 001945 813 SMG---P-HF-----APIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVA 853 (992)
Q Consensus 813 ~~~---~-~~-----~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~ 853 (992)
..+ + .+ ..|...++..++..+.+......-.....+|..++
T Consensus 879 ~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 879 NIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHH
Confidence 432 2 22 22344556666666665543222233334444443
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.8e-36 Score=367.76 Aligned_cols=771 Identities=13% Similarity=0.153 Sum_probs=584.6
Q ss_pred HHHH-hhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhh-----------
Q 001945 84 IESI-TLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTETI----------- 149 (992)
Q Consensus 84 l~~l-~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~l~~~~----------- 149 (992)
++.+ . ++++.+|+.+-..+..+.... .|+++..+.+.+.+ .+..+|..|...|...+...
T Consensus 10 L~~~~~-s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 10 LENSIL-SPDQNIRLTSETQLKKLSNDN-----FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHH-CSSHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHccc-CcCHHHHHHHHHHHHHHHhhC-----HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 3444 4 378999999999998866432 24566667776654 36789999999999876321
Q ss_pred -hhcc-cccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHH
Q 001945 150 -GQTF-RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIA 226 (992)
Q Consensus 150 -~~~~-~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~ 226 (992)
...+ .+....+.+.+.+.+.+ +++.+|..+..++..++...-+ ...+|.++..+.+.+.++ ++..+..+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p-------~~~w~~ll~~L~~~l~~~~~~~~r~~a 155 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELP-------HGAWPELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGG-------GTCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCc-------ccccHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1102 22344567788888888 7899999999999988776411 113466666666677777 88899999
Q ss_pred HHHHHHHhcCCccc---hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhcc
Q 001945 227 FEIFDELIESPAPL---LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (992)
Q Consensus 227 ~~~l~~l~~~~~~~---~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (992)
+.++..+.+...+. +.++...+++.+...+.+++.+.++|..+++.+..++...............+++.+...+..
T Consensus 156 l~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 235 (861)
T 2bpt_A 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcC
Confidence 99999998764432 567788888888887776544788999999999887654332211100112345555544422
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHcchhc---hH-HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH----------
Q 001945 304 SNEAGEDDDLAPDRAAAEVIDTMALNLAKHV---FP-PVFEFASVSCQNASPKYREAAVTAIGIISEGCA---------- 369 (992)
Q Consensus 304 ~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~---~~-~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---------- 369 (992)
+++..|..+..++..++...+..+ ++ .+++.+...+.+.+...|..++..++.+++...
T Consensus 236 -------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T 2bpt_A 236 -------EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 345789999999999998877433 34 666777777888999999999999998887532
Q ss_pred -------HHHHHhHHHHHHHHHhhcCC-------CChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHH
Q 001945 370 -------EWMKEKLESVLHIVLGALRD-------PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV 435 (992)
Q Consensus 370 -------~~~~~~l~~i~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v 435 (992)
....+++..++|.++..+.+ .++.+|.++..+++.++..+++ ..++.+++.+...+.+.++++
T Consensus 309 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCCChhH
Confidence 13345667889999888863 3578999999999999998763 345678888889999999999
Q ss_pred HHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC--cccHHHHHHHHHHHHhc
Q 001945 436 KEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF--IPYAERVLELLKIFMVL 512 (992)
Q Consensus 436 ~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~l~~~l~~ 512 (992)
|..++.+++.+++.+. ..+.++++.+++.+...+.++++.+|..++.+++.++...+..+ .+|++.++|.+.+.+..
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999997764 66778999999999999999999999999999999999988765 67899999999888853
Q ss_pred cChhhhHhHHHHHHHHHHHHHhhc---hhhccCChHHHHHHHHhccCCC--CchhhHHHHHHHHHHHHHcccCccCchhh
Q 001945 513 TNDEDLRSRARATELLGLVAESVG---RARMEPILPPFVEAAISGFGLE--FSELREYTHGFFSNIAGVLEDGFAQYLPL 587 (992)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~i~~~l~~~l~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~l~~ 587 (992)
+ ..+|..+..+++.++...+ +..+.+|++.+++.+...+++. ++.+|..++.+++.++...+..+.+|++.
T Consensus 466 ---~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 466 ---H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred ---C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH
Confidence 2 4567778888988888776 3568899999999999888743 47899999999999999999999999999
Q ss_pred hhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchH
Q 001945 588 VVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFL 667 (992)
Q Consensus 588 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~ 667 (992)
++|.+++.+.........+ . .+++ +....+.+..++.+++.++...+..+.||+
T Consensus 542 l~~~l~~~l~~~~~~~~~i-------------~-~~~~------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 595 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQ-------------L-TLED------------AQSLQELQSNILTVLAAVIRKSPSSVEPVA 595 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGG-------------C-CHHH------------HHHHHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHhhhccc-------------C-Chhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999987764210000000 0 0000 001123577899999999999999999999
Q ss_pred HHHHHHHHhcccCCCh-hHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 001945 668 EESLKILVRHASYFHE-DVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIV 746 (992)
Q Consensus 668 ~~~~~~l~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 746 (992)
+.+++.+...+...+. .+|..++.+++.++...+ ..+.++++.+++.+.+.+. +.+.+++..++.+++
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~----------~~~~~~l~~i~~~l~~~l~-~~~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG----------KGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIA 664 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHHHHH-CTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 9999999998877666 899999999988887654 2345688889998888884 456778889999999
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHH
Q 001945 747 EIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLF 826 (992)
Q Consensus 747 ~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 826 (992)
.++..+| ..+.+++..+++.+...+.+.. .+..+...+..+++.++...|+.|.+|++.++
T Consensus 665 ~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l 725 (861)
T 2bpt_A 665 DISNSLE-EDFRRYSDAMMNVLAQMISNPN------------------ARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725 (861)
T ss_dssp HHHHHTG-GGGHHHHHHHHHHHHHHHHCTT------------------CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHhc-hhccchHHHHHHHHHHHhCCcc------------------ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999888 4567888888888877775421 01134556788899999999999999999999
Q ss_pred HHHHHhhcCCCC----------ccchhhHHHHHHHHHhhcC---CchhhcHhhhHHHHHHhcCCC----ChHhHHHHHHH
Q 001945 827 DPLMKFAKSSRP----------LQDRTMVVATLAEVARDMG---SPIAAYVDRVMPLVLKELASP----DAMNRRNAAFC 889 (992)
Q Consensus 827 ~~l~~~l~~~~~----------~~~r~~al~~l~~~~~~~~---~~~~~~~~~~~~~ll~~l~~~----~~~vr~~a~~~ 889 (992)
|.+.+.+..... ..+|..++.+++.+++..| ..+.+|++.+++.+.+.+.+. +..+|..|+.+
T Consensus 726 ~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~ 805 (861)
T 2bpt_A 726 ALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGL 805 (861)
T ss_dssp HHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 999998864211 2367889999999998877 347789999999998988764 78999999999
Q ss_pred HHHHHhhc-CcchhhHHH-HHHHhhhhhhCC-CCCChhhHhhHHHHHHHHHH
Q 001945 890 VGELCKNG-GESALKYYG-DILRGLYPLFGD-SEPDDAVRDNAAGAVARMIM 938 (992)
Q Consensus 890 l~~l~~~~-~~~~~~~~~-~~l~~l~~~l~~-~~~~~~~~~n~~~~l~~l~~ 938 (992)
+|.++... |..+.+|++ .+++.+...+.. ++.+..+++++.=+++.+.+
T Consensus 806 l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 806 IGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99999988 888888888 888876666653 44556778888777776654
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.2e-37 Score=370.82 Aligned_cols=672 Identities=16% Similarity=0.195 Sum_probs=526.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCC-----C-Cc----HHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHH
Q 001945 6 ELLLIQFLMPDNDARRQAEDQIKRLAKD-----P-QV----VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL 75 (992)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~l~~~~~~-----p-~~----~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~ 75 (992)
.+++....+.+..+|..|-..|++.-.. + +. -..+++.+. ++++.+|..++..+.......|..-.+
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~wp-- 127 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWP-- 127 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTTCT--
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccccH--
Confidence 3444444567889999999999765432 2 21 234444443 567899999999988887654333223
Q ss_pred HHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCC-------CCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q 001945 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP-------AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (992)
Q Consensus 76 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~-------~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (992)
.+...+++.+. +.++.+|..+..+++.++....+ ...++.++|.+.+.++++++.+|..|+.++..++..
T Consensus 128 --~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 128 --DLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp --THHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred --HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 34445666666 47889999999999998864321 123677888888999999999999999999988876
Q ss_pred hhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001945 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFE 228 (992)
Q Consensus 149 ~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 228 (992)
.+..+..+++.+++.+...+.+ +++.+|..|++++..++...++ .+..+++.+++.+...+.+.+++++..+++
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~~L~~l~~~~~~-----~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGD-EEPEVRKNVCRALVMLLEVRMD-----RLLPHMHNIVEYMLQRTQDQDENVALEACE 278 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHCHH-----HHGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 6655667788899999999998 9999999999999999887632 245667778888878888888899999999
Q ss_pred HHHHHhcCC--ccchHHHHHHHHHHHHHHh-----------hC--CC-------CChHHHHHHHHHHHHHHHhhHhHhhh
Q 001945 229 IFDELIESP--APLLGDSVKSIVHFSLEVS-----------SS--HN-------LEPNTRHQAIQIISWLAKYKYNSLKK 286 (992)
Q Consensus 229 ~l~~l~~~~--~~~~~~~l~~li~~~~~~~-----------~~--~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (992)
.|..+++.. ...+.+++..+++.++..+ .+ .+ .+..+|..+...+..++...+.
T Consensus 279 ~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---- 354 (852)
T 4fdd_A 279 FWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---- 354 (852)
T ss_dssp HHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG----
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH----
Confidence 999988753 2345566667777766654 22 00 1234688899999988875543
Q ss_pred cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 001945 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGI 363 (992)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~ 363 (992)
..++.+++.+.+.+.+ .+|..|.++..+++.+++..+ ...++.+++.+...++++++.+|.+++++++.
T Consensus 355 -~~~~~l~~~l~~~l~~-------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 355 -ELLPHILPLLKELLFH-------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp -GGHHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2455666766666643 357899999999999987665 35668889999999999999999999999999
Q ss_pred HhhcCHH-HHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHH
Q 001945 364 ISEGCAE-WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYA 442 (992)
Q Consensus 364 i~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~ 442 (992)
+++.... ....++..+++.++..+.|+++.||..|+++++.+++..++.+.++++.+++.++..+.+........+..+
T Consensus 427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~a 506 (852)
T 4fdd_A 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506 (852)
T ss_dssp THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9986543 234568899999999999999999999999999999998887888999999999999988777777778899
Q ss_pred HHHHHHhhccccc--cchHHHHHHHHH---HhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc----
Q 001945 443 LAAFCEDMGEEIL--PFLDPLMGKLLA---ALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT---- 513 (992)
Q Consensus 443 l~~l~~~~~~~~~--~~~~~l~~~l~~---~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~---- 513 (992)
+..+++..+..+. +|++.+++.+.+ .+.+.+..++ .++++++.++...+..+.||.+.+++.+.+.+...
T Consensus 507 i~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~ 585 (852)
T 4fdd_A 507 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585 (852)
T ss_dssp HHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888776553 588899988885 4455666675 89999999999999999999999888666555421
Q ss_pred ----------ChhhhHhHHHHHHHHHHHHHhhchhhccCCh--HHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCc
Q 001945 514 ----------NDEDLRSRARATELLGLVAESVGRARMEPIL--PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF 581 (992)
Q Consensus 514 ----------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~ 581 (992)
+.++...+..++.+++.+++.+|. .+.+++ +.+++.+...++++++++|+.++.+++.++..++..+
T Consensus 586 ~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 664 (852)
T 4fdd_A 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV 664 (852)
T ss_dssp HHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHH
Confidence 112344667789999999999985 778887 6799999999988889999999999999999999999
Q ss_pred cCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcc
Q 001945 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661 (992)
Q Consensus 582 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~ 661 (992)
.+|++.++|.+.+.++.+ ..+.|..|++++|.++...+.
T Consensus 665 ~~~l~~~lp~l~~~l~~~-----------------------------------------~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 665 KPCIADFMPILGTNLNPE-----------------------------------------FISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp GGGHHHHHHHHHHTCCTT-----------------------------------------SHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCcc-----------------------------------------chHHHHHHHHHHHHHHHHhhH
Confidence 999999999999876311 114688999999999999999
Q ss_pred cccchHHHHHHHHHhcccCC--ChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 001945 662 SYAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVA 739 (992)
Q Consensus 662 ~~~~~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 739 (992)
.+.||+..+++.+.+.+++. ...++..++.+++++... .++.+.++++.+++.+.+.+..-.|.+.+.
T Consensus 704 ~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~----------~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~ 773 (852)
T 4fdd_A 704 EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV----------CPQEVAPMLQQFIRPWCTSLRNIRDNEEKD 773 (852)
T ss_dssp GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH----------CHHHHGGGHHHHHHHHHHHHHTSCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh----------CHHHhCccHHHHHHHHHHHhccccccHHHH
Confidence 99999999999999988754 568999999999999775 344555678888888888886545556678
Q ss_pred HHHHHHHHHHHHhCC
Q 001945 740 QACTSIVEIINDYGY 754 (992)
Q Consensus 740 ~~~~~l~~~~~~~g~ 754 (992)
.++.++..++...+.
T Consensus 774 ~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 774 SAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhChH
Confidence 899999999987653
No 13
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=9.4e-35 Score=347.04 Aligned_cols=770 Identities=13% Similarity=0.158 Sum_probs=498.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ 82 (992)
++++++++.+++|+++.|++|+++|++++++|++|..+..++.++.++.+|.+|+++|++.+.++|..++++.+..||+.
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~ 95 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHhhc---C-----CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh---
Q 001945 83 LIESITLE---H-----SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--- 151 (992)
Q Consensus 83 ll~~l~~~---~-----~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~--- 151 (992)
+++.+... + ++.++++++.+++.++++++|. .||++++.+.+.++++ ......++.+|..+.+.+.+
T Consensus 96 Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~ 173 (1023)
T 4hat_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSA 173 (1023)
T ss_dssp HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99988642 1 4788999999999999999995 8999999999999754 56788889999998887532
Q ss_pred -------------cccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC
Q 001945 152 -------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (992)
Q Consensus 152 -------------~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 218 (992)
.+...++.+++++..++.++.++.+...+++|+.+++.|.+-.. . .-.++++.+++ ..+ +
T Consensus 174 ~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~-i-~~~~ll~~l~~---~~L--~ 246 (1023)
T 4hat_C 174 EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRY-I-YETNILELLST---KFM--T 246 (1023)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHH-H-HSSSHHHHHHT---HHH--H
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHH-h-cchhHHHHHHH---HHc--C
Confidence 23455677888888888765788889999999999999985321 1 01223333330 222 2
Q ss_pred CHHHHHHHHHHHHHHhcCC--cc--ch-----------------------------------------------------
Q 001945 219 EEDVAVIAFEIFDELIESP--AP--LL----------------------------------------------------- 241 (992)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~~--~~--~~----------------------------------------------------- 241 (992)
+++.+..|++||.+++... ++ .+
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e 326 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 3445555555555555421 01 01
Q ss_pred ------------HHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-hhh---cCChHHHHHHHhhhhccCC
Q 001945 242 ------------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-LKK---HKLVIPILQVMCPLLAESN 305 (992)
Q Consensus 242 ------------~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~---~~~~~~il~~l~~~l~~~~ 305 (992)
.+.+...+..++.+...+ +.++-..++++|..+.+..... .+. .+++..+++.++..|...+
T Consensus 327 ~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~ 404 (1023)
T 4hat_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1023)
T ss_dssp HHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCT
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 111111122333332222 4555577888888887632110 011 1234556667777777665
Q ss_pred CC----CCCCCC-----------chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC--CChhhHHHHHHHHHHHhhcC
Q 001945 306 EA----GEDDDL-----------APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN--ASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 306 ~~----~~d~~~-----------~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~~al~~l~~i~~~~ 368 (992)
+. +++++| ...+...++|..++...+.++++.+++.+.+.+.+ .+|+.|+++++++|.+++++
T Consensus 405 e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~ 484 (1023)
T 4hat_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM 484 (1023)
T ss_dssp TCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSS
T ss_pred ccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCC
Confidence 21 222222 33444558888888877788888888988777654 68999999999999999998
Q ss_pred HHH-HHHhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHH
Q 001945 369 AEW-MKEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYA 442 (992)
Q Consensus 369 ~~~-~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~ 442 (992)
.+. ..++++.+++.++..+. |+...||..++|++|++++++.. ..++++.+++.++..+.+++++|+..||++
T Consensus 485 ~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 485 SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 654 66789999999998876 46788999999999999999843 356789999999999999999999999999
Q ss_pred HHHHHHhhcccc--------ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhcc--CcccHHHHHHHHHHHHhc
Q 001945 443 LAAFCEDMGEEI--------LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMVL 512 (992)
Q Consensus 443 l~~l~~~~~~~~--------~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~ 512 (992)
+..+++.+...+ .||++.+++.+...+..-+..-+..++++++.++...+.. ...+++.+++.+...++.
T Consensus 564 l~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~ 643 (1023)
T 4hat_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDT 643 (1023)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHH
Confidence 999999987554 5899999999999988878888899999999999987632 334556655554443321
Q ss_pred cChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHH
Q 001945 513 TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLA 592 (992)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l 592 (992)
-. .. + .-++..+.. +.-...+. ..+++++.++..+|..|.|++..+.+.+
T Consensus 644 l~-------~~--------~-~~~~~~~~d--~~~~~~l~------------~il~~~~~v~~~lg~~f~~~~~~i~~~~ 693 (1023)
T 4hat_C 644 IV-------EQ--------S-TANPTLLLD--SETVKIIA------------NIIKTNVAVCTSMGADFYPQLGHIYYNM 693 (1023)
T ss_dssp HH-------HH--------H-HHCTTGGGC--HHHHHHHH------------HHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HH-------HH--------H-hcCchhhcC--HHHHHHHH------------HHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 10 00 0 001110000 00001110 1223455555555555555555555555
Q ss_pred HhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccc-cceeeecchhhhHHHHHHHHHHHHHHhcc---cccchHH
Q 001945 593 FSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV-RNISVRTGVLDEKAAATQALGLFALHTKS---SYAPFLE 668 (992)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~a~~~l~~~~~~~~~---~~~~~~~ 668 (992)
++..+...+. + ...+. .++... +.-.++ ..--.|+.+++.+..++..... ....+++
T Consensus 694 l~~y~~~s~~---i----~~~~~-----------~~g~~~~~~~~~r-~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~ 754 (1023)
T 4hat_C 694 LQLYRAVSSM---I----SAQVA-----------AEGLIATKTPKVR-GLRTIKKEILKLVETYISKARNLDDVVKVLVE 754 (1023)
T ss_dssp HHHHHHHHHH---H----HHHHH-----------HHCGGGGGSHHHH-HHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHH
T ss_pred HHHHHHHHHH---H----HHHHH-----------hCCchhhccHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHH
Confidence 5433211000 0 00000 000000 000000 0113677788888887766532 1223455
Q ss_pred HHHHHHHhcccCCChhHHHH-HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh--CChHHHHHHHHHHH
Q 001945 669 ESLKILVRHASYFHEDVRYQ-AVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE--DDDKDVVAQACTSI 745 (992)
Q Consensus 669 ~~~~~l~~~~~~~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~l 745 (992)
++++.++.-.....+..|.. ...+...+++.++.. -.+.+..+++.++...++.+.. ++.|+.+...+..+
T Consensus 755 ~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~------~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll 828 (1023)
T 4hat_C 755 PLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM------IPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLL 828 (1023)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG------CHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 55555544322223333432 334445566655421 2345667777788777777765 46799999999999
Q ss_pred HHHHHHhCCccc---HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCCh----
Q 001945 746 VEIINDYGYMAV---EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHF---- 818 (992)
Q Consensus 746 ~~~~~~~g~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---- 818 (992)
..+...+-...+ .+.+..+++.+.-.+++.+. +.....+..+.+++..+....+..+
T Consensus 829 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r----------------~~~~~~l~~~~~ll~~~~~~~~~~~~~~f 892 (1023)
T 4hat_C 829 KVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNR----------------DVEVNGLQIALDLVKNIERMGNVPFANEF 892 (1023)
T ss_dssp HHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCH----------------HHHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCch----------------HHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 888876542221 44677777777777665432 1222344456666666654322222
Q ss_pred -HHHHHHHHHHHHHhhcCCCCcc---chhhHHHHHHHHHhh
Q 001945 819 -APIFAKLFDPLMKFAKSSRPLQ---DRTMVVATLAEVARD 855 (992)
Q Consensus 819 -~~~~~~l~~~l~~~l~~~~~~~---~r~~al~~l~~~~~~ 855 (992)
..|+..++..++..+.|..... .....+.-+-.+++.
T Consensus 893 ~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~ 933 (1023)
T 4hat_C 893 HKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYD 933 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHc
Confidence 2455566666667776654322 223444444445544
No 14
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=6e-36 Score=357.77 Aligned_cols=747 Identities=13% Similarity=0.151 Sum_probs=490.3
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC--ChhHHHHHHHHHHHhhhhcccCCCHH----
Q 001945 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQ---- 74 (992)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~--~~~~r~~a~~~l~~~i~~~~~~~~~~---- 74 (992)
+++.++++.+++| |++.|++|+++|++++++|++|..+..++.+++ ++.+|.+|+.+|++.+. .++++
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~~ 81 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNLL 81 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhHH
Confidence 6788899888877 799999999999999999999999999998753 79999999999999997 68888
Q ss_pred HHHHHHHHHHHHHhh----cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhh
Q 001945 75 LKQLVKQSLIESITL----EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTETI 149 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~----~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~l~~~~ 149 (992)
.+..+|+.+++.+.. ..++.+|++++.+++.++++++|. .||++++.+.+.+++++. ......+.+|..+.+++
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv 160 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEI 160 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHH
Confidence 999999999999985 246889999999999999999995 999999999999976543 34556677777666665
Q ss_pred hhc------------------cccc-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHH
Q 001945 150 GQT------------------FRPH-----FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (992)
Q Consensus 150 ~~~------------------~~~~-----~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 206 (992)
.+. +... .+.++.++..+... +++.++..+++|+.+++.|.+... ... +.
T Consensus 161 ~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~-~~~~l~~~~L~~l~s~i~wi~~~~-i~~-----~~ 233 (980)
T 3ibv_A 161 ADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA-KNYGTVGLCLQVYAQWVSWININL-IVN-----EP 233 (980)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCHHH-HHC-----HH
T ss_pred HhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhhcCHHh-hhc-----ch
Confidence 321 1111 23334444454444 678899999999999999985221 100 23
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC-------------------------------------------------
Q 001945 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESP------------------------------------------------- 237 (992)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~------------------------------------------------- 237 (992)
+++.+.+.+. +++.+..|++||.+++...
T Consensus 234 ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~ 311 (980)
T 3ibv_A 234 CMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI 311 (980)
T ss_dssp HHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433332 2344445555444443221
Q ss_pred ---cc--------chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhh-------hcCChHHHHHHHhh
Q 001945 238 ---AP--------LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK-------KHKLVIPILQVMCP 299 (992)
Q Consensus 238 ---~~--------~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-------~~~~~~~il~~l~~ 299 (992)
+. .....+..+++.++.+..++ ++++-..+++||..+.......-. ..+++..+++.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~ 389 (980)
T 3ibv_A 312 KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIK 389 (980)
T ss_dssp HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 10 01144556677777777766 678888889999887754221110 11366677788887
Q ss_pred hhccCCCCCCC-----CC----CchHHHHHHHHHHHHHHcchhchH----HHHHHHHhhhc---CCChhhHHHHHHHHHH
Q 001945 300 LLAESNEAGED-----DD----LAPDRAAAEVIDTMALNLAKHVFP----PVFEFASVSCQ---NASPKYREAAVTAIGI 363 (992)
Q Consensus 300 ~l~~~~~~~~d-----~~----~~~~~~a~~~l~~l~~~~~~~~~~----~~~~~l~~~l~---~~~~~~r~~al~~l~~ 363 (992)
.+...++++.+ |+ ...|+.....++.++...++.+++ .+.+.+.+.+. +.+|+.+++++++++.
T Consensus 390 k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~ 469 (980)
T 3ibv_A 390 KMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYI 469 (980)
T ss_dssp TTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 77765432111 11 134555554444444434455566 55555555552 4679999999999999
Q ss_pred HhhcCHHHH------HHhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHH--hccc
Q 001945 364 ISEGCAEWM------KEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN--ALED 430 (992)
Q Consensus 364 i~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~--~l~~ 430 (992)
++|++.... .++++.+++.+...++ ++||.||.+++++++++++++.. ..++++.+++.++. ++.+
T Consensus 470 iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~~ 548 (980)
T 3ibv_A 470 FGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIHN 548 (980)
T ss_dssp TTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTTC
T ss_pred HHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhccccccC
Confidence 999876421 1345566676666654 89999999999999999999853 34678889999999 9999
Q ss_pred CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCC-----C----------------HhHHHHHHHHHHHHHH
Q 001945 431 ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-----P----------------RNLQETCMSAIGSVAA 489 (992)
Q Consensus 431 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~----------------~~v~~~a~~~l~~l~~ 489 (992)
++++||.+|+.++.+|++.++..+.||++.+++.+..++... + .+-+...++++|.++.
T Consensus 549 ~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~ 628 (980)
T 3ibv_A 549 TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLIS 628 (980)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887731 0 1236678999999998
Q ss_pred Hhh---ccCcccHHHHHHHHHH----HHhccCh--hhhHhHHHHHHHHHHHHHhhch--hhccC---ChHHHHHHHHhcc
Q 001945 490 AAE---QAFIPYAERVLELLKI----FMVLTND--EDLRSRARATELLGLVAESVGR--ARMEP---ILPPFVEAAISGF 555 (992)
Q Consensus 490 ~~~---~~~~~~~~~~~~~l~~----~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~--~~~~~---~~~~i~~~l~~~l 555 (992)
..+ +.-..|++.+++.+.+ .+..... +........+.+++.+++++.. ....| .+.++++.++..+
T Consensus 629 ~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l 708 (980)
T 3ibv_A 629 SGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLIL 708 (980)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHH
Confidence 864 2344566666654433 3432211 1111122457777888876632 11122 3345555554444
Q ss_pred C--CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcccc
Q 001945 556 G--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (992)
Q Consensus 556 ~--~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (992)
. ..+..+|+++..++.+++.++|.++.|++|.++..++...+..
T Consensus 709 ~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~---------------------------------- 754 (980)
T 3ibv_A 709 DRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMN---------------------------------- 754 (980)
T ss_dssp HHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT----------------------------------
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHH----------------------------------
Confidence 3 3468899999999999999999999999999999999543311
Q ss_pred ceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhc----ccCC---Chh------HHHHHHHHHHHHHHHH
Q 001945 634 NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRH----ASYF---HED------VRYQAVFALKNILTAA 700 (992)
Q Consensus 634 ~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~---~~~------vr~~a~~~l~~l~~~~ 700 (992)
+-...++.++.++...+..+.|.+..++..+... +... .+. +|++....+..++..-
T Consensus 755 ----------e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~ 824 (980)
T 3ibv_A 755 ----------ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKG 824 (980)
T ss_dssp ----------THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2356788999999888888888877776655443 3321 122 3334444444443320
Q ss_pred -HHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcc----cHHHHHHHHHHHHHHHhhh
Q 001945 701 -HAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA----VEPYMSRLVDATLLLLREE 775 (992)
Q Consensus 701 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~~~~~~~l~~~l~~~l~~~ 775 (992)
...+ -.+..+..++.++..++....+-+|+.....++..+..++..+|... +.+++-++++..+.+..+.
T Consensus 825 ~~~v~-----~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~ 899 (980)
T 3ibv_A 825 FGSIL-----FTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNP 899 (980)
T ss_dssp CTGGG-----GSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC-
T ss_pred chhhh-----cCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCC
Confidence 0111 01222445667777777654444567777788899999998886322 2333222444444333221
Q ss_pred hhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHH-HHHH
Q 001945 776 STCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFA-KLFD 827 (992)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~ 827 (992)
..+-. +.....+...++.++..+....|+.|..|+. .++|
T Consensus 900 -----~f~~~-------Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp 940 (980)
T 3ibv_A 900 -----NFNTR-------DGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFP 940 (980)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred -----CCChh-------hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCC
Confidence 11111 1122356667778888888888876666653 3444
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.6e-37 Score=351.39 Aligned_cols=419 Identities=20% Similarity=0.318 Sum_probs=353.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhC--CCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhc-----------cc
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK--DPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH-----------WA 69 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~--~p~~~~~l~~il~~~-~~~~~r~~a~~~l~~~i~~~-----------~~ 69 (992)
++.++|++++|||+++|++|+++|+++++ .|+++..|++++.++ .++.+|++|+++||+.+..+ |.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 58899999999999999999999999987 489999999999875 47899999999999998655 68
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC--CHHHHHHHHHHHHHhhh
Q 001945 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (992)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~l~~ 147 (992)
.++++.++.||+.+++.|.+ .++.+ +.++.+++.+++.++|.+.|++++|.+.+.++++ ++..+.+++.+|+.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999985 56677 9999999999999888668999999999999988 89999999999999998
Q ss_pred hh-hhcccccHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 001945 148 TI-GQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (992)
Q Consensus 148 ~~-~~~~~~~~~~i~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (992)
.. ++.+.++.+.+++.+..++.++. ++.||..|++++..++.+..+......+ .+.+++.+...+.+++++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE---RHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH---HHHHHHHHHHHTTCSSHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHhcCCCCHHHHHH
Confidence 76 66678889999999999999832 7999999999999988765321111111 1234555556667788899999
Q ss_pred HHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH--hh-------------hc--
Q 001945 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LK-------------KH-- 287 (992)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~-------------~~-- 287 (992)
++++|..+++..+..+.++++ .+++.++....+. ++++|..++++|..+++..... .. ..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 999999999998888888888 8888887777654 8899999999999998653110 00 00
Q ss_pred --CChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHh
Q 001945 288 --KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (992)
Q Consensus 288 --~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (992)
++++.+++.++..+.+.++|+++++|..|..+..+++.++..+++.+++.+++.+...+++++|+.|++|+.+++.++
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 134678888888888877666778899999999999999999998888999999999999999999999999999999
Q ss_pred hcCH-HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH--HhhhhhHHHHHHHhcc
Q 001945 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALE 429 (992)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~ll~~l~~~l~ 429 (992)
+++. +.+.++++.++|.+++.++|+++.||.+|+++++++++.+++.+ .++++.+++.++..|+
T Consensus 395 ~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 9875 44566788999999999999999999999999999999987654 3678889998887764
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4.5e-31 Score=312.31 Aligned_cols=770 Identities=13% Similarity=0.163 Sum_probs=490.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ 82 (992)
+.++++++.+++|+++.|++|+++|++++++|++|..+..++.++.++.+|.+|+++|++.+.++|..++++.+..+|+.
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHhh--------cCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh---
Q 001945 83 LIESITL--------EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--- 151 (992)
Q Consensus 83 ll~~l~~--------~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~--- 151 (992)
+++.+.. +.++.++++++.+++.++++++|+ .||++++.+.+.+++ ++..+..++.+|..+.+.+.+
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999874 235788999999999999999995 899999999998864 456788899999999887432
Q ss_pred -------------cccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHH-HHHhhc
Q 001945 152 -------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVS-RQCLAS 217 (992)
Q Consensus 152 -------------~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l-~~~l~~ 217 (992)
.+...++.+++++..++....++.+...+++++.+++.|.+-.. . +. +.+++.+ ...+
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~-i--~~---~~ll~~L~~~~L-- 257 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY-I--FE---TKLISTLIYKFL-- 257 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-H--HS---SSHHHHHHHHTS--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHH-h--cc---chHHHHHHHHhc--
Confidence 23445677888888888765788888999999999999985321 1 00 1223322 2222
Q ss_pred CCHHHHHHHHHHHHHHhcCCccc---------------------------------------------------------
Q 001945 218 GEEDVAVIAFEIFDELIESPAPL--------------------------------------------------------- 240 (992)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~~~~~--------------------------------------------------------- 240 (992)
++++.+..|++||.+++....+-
T Consensus 258 ~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~ 337 (1073)
T 3gjx_A 258 NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ 337 (1073)
T ss_dssp SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665554431100
Q ss_pred -------hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHh--------------------hhc---CCh
Q 001945 241 -------LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL--------------------KKH---KLV 290 (992)
Q Consensus 241 -------~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--------------------~~~---~~~ 290 (992)
+...+...++.++.+...+ +.++-..++++|..+.+.--... ++. +++
T Consensus 338 lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~ 415 (1073)
T 3gjx_A 338 LLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVL 415 (1073)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHH
T ss_pred HHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHH
Confidence 1111122223333333333 56667778888887765321110 111 122
Q ss_pred HHHHHHHhhhhccCCC----CCCCCC-----------CchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC--CChhh
Q 001945 291 IPILQVMCPLLAESNE----AGEDDD-----------LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN--ASPKY 353 (992)
Q Consensus 291 ~~il~~l~~~l~~~~~----~~~d~~-----------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~~ 353 (992)
..+...++..|...++ ++|+++ ...++...+++..++...+.+....+++.+.+.+++ .+|+.
T Consensus 416 ~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~ 495 (1073)
T 3gjx_A 416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKN 495 (1073)
T ss_dssp HHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3344455555555442 112111 124456667777766545577777788887765543 57999
Q ss_pred HHHHHHHHHHHhhcCHHH-HHHhHHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHh
Q 001945 354 REAAVTAIGIISEGCAEW-MKEKLESVLHIVLGALRDP-----EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNA 427 (992)
Q Consensus 354 r~~al~~l~~i~~~~~~~-~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~ 427 (992)
++++++++|.++....+. -.++++.+++.++.....+ .+.++...++++|++.+++.. ..++++.++..++..
T Consensus 496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~~L~~~ 574 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVNKLFEF 574 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-CHHHHHHHHHHHHHH
Confidence 999999999999766543 3467899999999887544 456777788999999999853 466889999999999
Q ss_pred cccCChHHHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC--cc
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEI--------LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF--IP 497 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~--------~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~--~~ 497 (992)
+.++++.|+..||.++..+++.|+..+ .||++.+++.+......-+++-.....+++|.++...+... ..
T Consensus 575 m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~ 654 (1073)
T 3gjx_A 575 MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEH 654 (1073)
T ss_dssp TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 999999999999999999999997654 57999999999988888788888899999999998887533 34
Q ss_pred cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHc
Q 001945 498 YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVL 577 (992)
Q Consensus 498 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~ 577 (992)
+...+|+...+.+..- -..+ .-+.+.+.. . ..+..+. ..+++..++|..+
T Consensus 655 ~i~~Lm~~~~~~w~~l-------~~~~---------~~~~~~~~d-~-~~i~~l~------------~il~~n~~v~~~~ 704 (1073)
T 3gjx_A 655 LIEKYMLLPNQVWDSI-------IQQA---------TKNVDILKD-P-ETVKQLG------------SILKTNVRACKAV 704 (1073)
T ss_dssp HHHHHTHHHHHHHHHH-------HHHH---------HHCGGGGGC-H-HHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHh---------hcCchhccC-h-HHHHHHH------------HHHhhhHHHHhhc
Confidence 5555555444333210 0000 001111111 0 0111111 1334666777778
Q ss_pred ccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHH
Q 001945 578 EDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFAL 657 (992)
Q Consensus 578 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~ 657 (992)
|..|.|++..+.+.+++..+.-.+ .+. ..+.. ++. ...+...++ +.--.|+..++.+..++.
T Consensus 705 g~~f~~~~~~i~~~~l~~y~~~s~---~i~----~~v~~-~g~---------~~~~~~~~~-~~r~ik~eil~l~~~~i~ 766 (1073)
T 3gjx_A 705 GHPFVIQLGRIYLDMLNVYKCLSE---NIS----AAIQA-NGE---------MVTKQPLIR-SMRTVKRETLKLISGWVS 766 (1073)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHH---HHH----HHHHH-HCG---------GGGSSHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHh-CCc---------hhhccHHHH-HHHHHHHHHHHHHHHHHh
Confidence 877888887777777654321000 000 00000 000 000000000 011257777777777665
Q ss_pred Hhccc---ccchHHHHHHHHHhcccCCChhHHH-HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh--
Q 001945 658 HTKSS---YAPFLEESLKILVRHASYFHEDVRY-QAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-- 731 (992)
Q Consensus 658 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~vr~-~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 731 (992)
...+. ...+++++++.++.-.....++.|. ..+.++..+++.++.. -.+.+..+++.++...++.+..
T Consensus 767 ~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~------~~~~~~~il~~vf~~Tl~mi~~~f 840 (1073)
T 3gjx_A 767 RSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGH------ITAEIPQIFDAVFECTLNMINKDF 840 (1073)
T ss_dssp TCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGG------TGGGHHHHHHHHHHHHHHHHSSCS
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHhCCc
Confidence 43211 2233455555444322212222332 2345556666665532 2345667888888888888764
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCccc---HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHH
Q 001945 732 DDDKDVVAQACTSIVEIINDYGYMAV---EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLP 808 (992)
Q Consensus 732 ~~~~~~~~~~~~~l~~~~~~~g~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 808 (992)
++.|+.+...+..+..+...+-...+ .+.+..+++.+.-.+++.+. +..+..+..+.+++.
T Consensus 841 ~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r----------------~i~~~~l~~~~~ll~ 904 (1073)
T 3gjx_A 841 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMR----------------NVADTGLQILFTLLQ 904 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSH----------------HHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCCh----------------hHHHHHHHHHHHHHH
Confidence 35799999999999988877543322 45678888888777766432 111222333444444
Q ss_pred HHHH---HhCCChHHHHHHHHHHHHHhhcCCCCcc---chhhHHHHHHHHHhh
Q 001945 809 AFAK---SMGPHFAPIFAKLFDPLMKFAKSSRPLQ---DRTMVVATLAEVARD 855 (992)
Q Consensus 809 ~l~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~~---~r~~al~~l~~~~~~ 855 (992)
.+.. .....+..|+-.++..++..+.|..... .....+.-+..+++.
T Consensus 905 ~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~ 957 (1073)
T 3gjx_A 905 NVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 957 (1073)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTT
T ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHc
Confidence 4331 1111233455566666677777655421 233445555555554
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=5.9e-31 Score=307.70 Aligned_cols=570 Identities=15% Similarity=0.147 Sum_probs=440.3
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i 160 (992)
..+++.+.+ +++.+|..++..++.++....+...|++++|.+.+.. ++++.+|..+...++.+....+. ..+...+
T Consensus 13 ~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~l 88 (588)
T 1b3u_A 13 AVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc--HHHHHHH
Confidence 356777775 8899999999999999876555457899999998877 67788999999999988776543 2355667
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
++.+..++.+ +++.||..|..++..++...+.. .+. +.+++.+.....++++..+..++.++..++...+.
T Consensus 89 l~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~----~~~---~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~- 159 (588)
T 1b3u_A 89 LPPLESLATV-EETVVRDKAVESLRAISHEHSPS----DLE---AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS- 159 (588)
T ss_dssp HHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHH----HHH---HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-
T ss_pred HHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHH----HHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-
Confidence 8888888887 89999999999999999877421 112 23344444455567788899999999988876553
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHH
Q 001945 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (992)
Q Consensus 241 ~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~ 320 (992)
...+.+++.+...+.++ ++.+|..+.+.+..+++..+... +.+.+++.+...+.+ +++.+|..+.
T Consensus 160 --~~~~~l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d-------~~~~vr~~a~ 224 (588)
T 1b3u_A 160 --AVKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASD-------EQDSVRLLAV 224 (588)
T ss_dssp --HHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTC-------SCHHHHTTHH
T ss_pred --HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHh----HHHHHHHHHHHHhcC-------CcHHHHHHHH
Confidence 34566777777777655 89999999999999987644321 234466666665543 2357899999
Q ss_pred HHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001945 321 EVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (992)
Q Consensus 321 ~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (992)
.++..++...+ +...+.++|.+...+++++|.+|.+++.+++.++...+.. .+.+.+++.+...++|+++.||..|+
T Consensus 225 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~ 302 (588)
T 1b3u_A 225 EACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAAS 302 (588)
T ss_dssp HHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999888 4555778888888899999999999999999999865432 23457889999999999999999999
Q ss_pred HHHHHhHhhhcHHHH--hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHH
Q 001945 400 FALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQ 477 (992)
Q Consensus 400 ~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~ 477 (992)
++++.++..+++... .+.+.++|.+...+.|+++.||..++.++..++..++... ..+.+++.+...+.+.+..+|
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr 380 (588)
T 1b3u_A 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVR 380 (588)
T ss_dssp HHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHH
Confidence 999999998865422 4678899999999999999999999999999998876532 345677788888888899999
Q ss_pred HHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC
Q 001945 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL 557 (992)
Q Consensus 478 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~ 557 (992)
..++.+++.++...+.. .+.+.++|.+.+.+. ++++++|..++.+++.++..+|++.+ .+.+++.+...+++
T Consensus 381 ~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d 452 (588)
T 1b3u_A 381 LNIISNLDCVNEVIGIR--QLSQSLLPAIVELAE---DAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVD 452 (588)
T ss_dssp HHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcC
Confidence 99999999998876532 234667887777663 35667888899999999998887543 35677888888888
Q ss_pred CCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceee
Q 001945 558 EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISV 637 (992)
Q Consensus 558 ~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (992)
+++.+|..+..+++.++..+|..+ +++.++|.+....+.
T Consensus 453 ~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~--------------------------------------- 491 (588)
T 1b3u_A 453 HVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD--------------------------------------- 491 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC---------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC---------------------------------------
Confidence 889999999999999999988753 467888888754320
Q ss_pred ecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 001945 638 RTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREI 717 (992)
Q Consensus 638 ~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 717 (992)
.....|..++.+++.++..++.. .|.+.+++.+...+++.+++||..++.+++.+...++ +...
T Consensus 492 --~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---------~~~~--- 555 (588)
T 1b3u_A 492 --PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---------NSTL--- 555 (588)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC---------HHHH---
T ss_pred --CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc---------hhhh---
Confidence 11247889999999999887654 3778888889999999999999999999999876432 2221
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 001945 718 LDTVMNIFIRTMTEDDDKDVVAQACTSIVEI 748 (992)
Q Consensus 718 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 748 (992)
.+.+++.+.+ +.++.|.+++..+..++..+
T Consensus 556 ~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 556 QSEVKPILEK-LTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HcCCCchhHHHHHHHHHHHh
Confidence 2455555555 35677899998888877644
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=9e-30 Score=297.65 Aligned_cols=569 Identities=15% Similarity=0.111 Sum_probs=425.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCH-HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC
Q 001945 38 PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSP-QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW 116 (992)
Q Consensus 38 ~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~-~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~ 116 (992)
..++.-+. ++++.+|..|+..+..... .+.+ .....+...|.+.+ +.++.+|..++.+++.+.........+
T Consensus 13 ~~l~~~l~-s~~~~~R~~A~~~l~~i~~----~~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~~ 85 (588)
T 1b3u_A 13 AVLIDELR-NEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEYV 85 (588)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHTHHHHHH----HSCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred HHHHHHhh-cccHHHHHHHHHhHHHHHH----HhCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHHH
Confidence 34444443 4566777777766655432 1222 22233333343322 567899999999998777654332367
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
+.+++.+...+.+++..+|..+...+..+....++. ...+.+++.+..+..+ +++.+|..|+.+++.++...+..
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHH--
Confidence 889999998888888999999999999998776642 1233467777777777 78999999999999988776421
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 001945 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (992)
..+.+++.+...+.++++.++..++..+..+++..+. ....+.+++.+.....++ ++.+|..++..+..+
T Consensus 161 ------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 161 ------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNI 230 (588)
T ss_dssp ------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Confidence 2244555555666788899999999999999876554 234456677766666655 789999999999988
Q ss_pred HHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHH
Q 001945 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYRE 355 (992)
Q Consensus 277 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~ 355 (992)
+...+... +.+.+++.+...+. |.+|..|..+..+++.++...+ +...+.+++.+...+++++|.+|.
T Consensus 231 ~~~~~~~~----~~~~~~~~l~~~~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 299 (588)
T 1b3u_A 231 AQLLPQED----LEALVMPTLRQAAE-------DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRA 299 (588)
T ss_dssp HHHSCHHH----HHHHTHHHHHHHHT-------CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHH
T ss_pred HHhCCHHH----HHHHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHH
Confidence 86543321 22334454444442 3457899999999999998887 334467788888889999999999
Q ss_pred HHHHHHHHHhhcCHHHHH--HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCCh
Q 001945 356 AAVTAIGIISEGCAEWMK--EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD 433 (992)
Q Consensus 356 ~al~~l~~i~~~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 433 (992)
+++.+++.+++.++.... .+++.++|.+...++|+++.||.+++++++.++..++... ..+.++|.+...+.|+++
T Consensus 300 ~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 300 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCch
Confidence 999999999997754322 4577889999999999999999999999999999887532 346688999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc
Q 001945 434 EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513 (992)
Q Consensus 434 ~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 513 (992)
.||..++.++..+++..+.. .+.+.+++.+...+.+.++.+|..++.+++.++...+..+ +.+.++|.+...+..
T Consensus 378 ~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d- 452 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVD- 452 (588)
T ss_dssp HHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcC-
Confidence 99999999999998876532 2456778888888889999999999999999999887653 335678888777643
Q ss_pred ChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHH
Q 001945 514 NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF 593 (992)
Q Consensus 514 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~ 593 (992)
+...+|..++.+++.++..+|++. +.+.+++.+....+++++.+|..++.+++.++..+|..+ |.+.++|.++
T Consensus 453 --~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~ 525 (588)
T 1b3u_A 453 --HVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVL 525 (588)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHH
Confidence 345678889999999998888742 356677777777778889999999999999999988653 7889999998
Q ss_pred hhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Q 001945 594 SSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKI 673 (992)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (992)
+.++.. ..++|..++++++.++...+..+. .+.+.+.
T Consensus 526 ~~l~d~-----------------------------------------~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p~ 562 (588)
T 1b3u_A 526 RMAGDP-----------------------------------------VANVRFNVAKSLQKIGPILDNSTL--QSEVKPI 562 (588)
T ss_dssp HGGGCS-----------------------------------------CHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHH
T ss_pred hhCCCC-----------------------------------------CchHHHHHHHHHHHHHHHhchhhh--HHHHHHH
Confidence 876411 114789999999999887765432 2455566
Q ss_pred HHhcccCCChhHHHHHHHHHHHH
Q 001945 674 LVRHASYFHEDVRYQAVFALKNI 696 (992)
Q Consensus 674 l~~~~~~~~~~vr~~a~~~l~~l 696 (992)
+..+.++.+.++|..|..++..+
T Consensus 563 l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 563 LEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHcCCCchhHHHHHHHHHHHh
Confidence 66667888999999999988765
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=2.4e-25 Score=274.37 Aligned_cols=505 Identities=13% Similarity=0.125 Sum_probs=338.6
Q ss_pred ChHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCCcHHHHHHHHh-cCCChhHHHHHHHHHHHhhhhcccCCCHHHHH
Q 001945 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLR-TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (992)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~l~~~~~~p~~~~~l~~il~-~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~ 77 (992)
|.+++.++++.+++| |++.|++|+++|++++++|+++..+..++. .+.++.+|++|+++|++.+.++|..++++.+.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 567788999999988 788999999999999999988888888776 56689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc------CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh
Q 001945 78 LVKQSLIESITLE------HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (992)
Q Consensus 78 ~i~~~ll~~l~~~------~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~ 151 (992)
.||+.+++.+.+. .++.+|++++.+++.|++.++| ..||++++.+.+.+++ +...++.++.+|..+++....
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998854 4689999999999999999999 5899999999999976 556788999999999876321
Q ss_pred --------------cccccHHHHHHHHHHhcCCC----------------------------------------------
Q 001945 152 --------------TFRPHFADMQALLLKCLQDE---------------------------------------------- 171 (992)
Q Consensus 152 --------------~~~~~~~~i~~~l~~~l~~~---------------------------------------------- 171 (992)
.+...++.+++.+..++.+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~ 246 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE 246 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence 12223334444444333210
Q ss_pred ------------CChHHHHHHHHHHHHhhcccCChhhHHHHHhhH-HHHHHHHHHHhh--------cCCHHHHHHHHHHH
Q 001945 172 ------------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLA--------SGEEDVAVIAFEIF 230 (992)
Q Consensus 172 ------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~--------~~~~~~~~~~~~~l 230 (992)
+++.+|..|+.||..++.....+.+...+-..+ +..+..+..... +.+.+.....++.+
T Consensus 247 ~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 247 NCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp TSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 123344555555555544322111100000111 111222222221 11234444555555
Q ss_pred HHHhcCCcc--------chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhH--hHhhhcCChHHHHHHH---
Q 001945 231 DELIESPAP--------LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVM--- 297 (992)
Q Consensus 231 ~~l~~~~~~--------~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l--- 297 (992)
..+.+.... .....+..+++.++.+..++ +..+...++++|..+.+... ..-.-.+++..+++.+
T Consensus 327 ~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~ 404 (1204)
T 3a6p_A 327 CALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTN 404 (1204)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 554421111 12345667888888888765 77888899999998876521 0000112566777777
Q ss_pred hhhhccCCCCC----------CC--C-----CCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-------------
Q 001945 298 CPLLAESNEAG----------ED--D-----DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ------------- 347 (992)
Q Consensus 298 ~~~l~~~~~~~----------~d--~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~------------- 347 (992)
+..+...++++ .| + .++.|+...+.++.++...+...++.+.+.+...+.
T Consensus 405 l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 405 LVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp HSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 44443322111 11 1 135677788888888888876666666665543322
Q ss_pred ------------CCChhhHHHHHHHHHHHhhcCHHHHH-HhHH-HHHHHHHhhc---CCCChhHHHHHHHHHHHhHhhhc
Q 001945 348 ------------NASPKYREAAVTAIGIISEGCAEWMK-EKLE-SVLHIVLGAL---RDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 348 ------------~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~-~i~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
++.|...++....+..+.+++..... ++++ .+++.+++.+ +..+|.+|..++.+++.++.++.
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~ 564 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT 564 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence 23577788888888888887643221 1221 2344444432 34688999999999999999875
Q ss_pred HHHHhhhhhHHHHHHHhccc------------CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC---Hh
Q 001945 411 PEIVSHYESVLPCILNALED------------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP---RN 475 (992)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~ 475 (992)
. ..++++.+++.++..+.+ .+.++|.+|+.++..+++.+++.+.||++.+...+...+.... .+
T Consensus 565 ~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 565 Y-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp T-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred c-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 2 235778888888888766 2347999999999999999999999999999999998887544 56
Q ss_pred HHHHHHHHHHHHHHHhh--ccCcccHHHHHHHHHHHH
Q 001945 476 LQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFM 510 (992)
Q Consensus 476 v~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~l~~~l 510 (992)
-+....++++.++...+ +....|+..+++.+.+.+
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 66677777777743322 233345666666555554
No 20
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.92 E-value=2.1e-20 Score=230.14 Aligned_cols=715 Identities=10% Similarity=0.044 Sum_probs=436.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc--C-ChhhHHHHHhhHH
Q 001945 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT--N-DGAEVVKFREFIP 205 (992)
Q Consensus 129 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~--~-~~~~~~~~~~~~~ 205 (992)
+++...|..|-..|..+-+. ++.+..+...+..+.+..+|..|+..|.+.+... . +......++ .
T Consensus 18 ~~d~~~r~~A~~~L~~~~~~---------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir---~ 85 (971)
T 2x1g_F 18 RSNSQNQAITHEWLTDAEAS---------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELK---Q 85 (971)
T ss_dssp TSTTTC----CHHHHHTTTS---------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHH---H
T ss_pred CCCHHHHHHHHHHHHHHHcC---------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHH---H
Confidence 34445566666666654321 2334445556655478999999999998887532 1 112222233 3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCC---CC-ChHHHHHHHHHHHHHHHhhH
Q 001945 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSH---NL-EPNTRHQAIQIISWLAKYKY 281 (992)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~---~~-~~~~r~~a~~~l~~l~~~~~ 281 (992)
.+++.+.... .+...++...+.++..++....+.....++.++. .++++ .. ++..+..++.+|..+++...
T Consensus 86 ~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~----~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 86 KILESIVRFA-GGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVIN----TFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTCC------HHHH----HHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccccccHHHHHHHH----HHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 3444443332 2346788899999999987654322333444443 33322 11 24567888999988885311
Q ss_pred hH--------hhh--cCChHHHHHHHhhhhccCCCC-CCCCCCchHHHHHHHHHHHHH--HcchhchHHHHHHHHhhh--
Q 001945 282 NS--------LKK--HKLVIPILQVMCPLLAESNEA-GEDDDLAPDRAAAEVIDTMAL--NLAKHVFPPVFEFASVSC-- 346 (992)
Q Consensus 282 ~~--------~~~--~~~~~~il~~l~~~l~~~~~~-~~d~~~~~~~~a~~~l~~l~~--~~~~~~~~~~~~~l~~~l-- 346 (992)
.. .+. ...++.+++.+...+.....+ .+++.+..+..+..|+..... ..+....+.+++.+.. +
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~ 239 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVH 239 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhh
Confidence 00 000 124556666666665543221 112234677788888887776 3453345566666554 3
Q ss_pred --------------cCCChhhHHHHHHHHHHHhhcCH-HHHHHhHHHHHHHHHh-------hcCCCC---hhHHHHHHHH
Q 001945 347 --------------QNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLG-------ALRDPE---QFVRGAASFA 401 (992)
Q Consensus 347 --------------~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~-------~l~d~~---~~vr~~a~~~ 401 (992)
.+++...|.+|+.++..+..... ....+.+..+++.++. .+.+.+ ..+....+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 240 KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHH
Confidence 11356789999999999998532 1112223333333332 334444 2666677888
Q ss_pred HHHhHhhhcHHH-----------HhhhhhHHHHHHHhccc-----CChHHHHHHHHHHHHHHHhh------------ccc
Q 001945 402 LGQFAEYLQPEI-----------VSHYESVLPCILNALED-----ESDEVKEKSYYALAAFCEDM------------GEE 453 (992)
Q Consensus 402 l~~l~~~~~~~~-----------~~~~~~ll~~l~~~l~~-----~~~~v~~~a~~~l~~l~~~~------------~~~ 453 (992)
+..+++.....+ .+++..+++.++..... .+..|...++.++..+++.. ...
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~ 399 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEY 399 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 887775432222 24666778888876643 35788999999998887632 123
Q ss_pred cccchHHHHHHHHHHhcCCC---------------HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhcc--Chh
Q 001945 454 ILPFLDPLMGKLLAALENSP---------------RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDE 516 (992)
Q Consensus 454 ~~~~~~~l~~~l~~~l~~~~---------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~ 516 (992)
+.|++..+++.++..+.-++ ...|..+.+++..++...+ ...++.+++.+.+.+... +..
T Consensus 400 ~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~ 476 (971)
T 2x1g_F 400 IKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPT 476 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCC
Confidence 45788888888887774321 1345566666666554444 245566677776666431 224
Q ss_pred hhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC--CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHh
Q 001945 517 DLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (992)
Q Consensus 517 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~ 594 (992)
++..++.++-+++.++..+.. ...++++.+++.+.. +. +.++.+|..++.++++++..++... .|++.+++.++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~-~~~~~l~~l~~~l~~-l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~ 553 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGG-EEKRQIPRLMRVLAE-IPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVR 553 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHH-SCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHh-cCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence 556677889999998876654 335788888885444 44 3478899999999999999887654 799999999987
Q ss_pred hccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Q 001945 595 SCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKIL 674 (992)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 674 (992)
.++ + .++..|+.++..+++.++..+.||++.++..+
T Consensus 554 ~l~--~------------------------------------------~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 554 GLN--S------------------------------------------SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHH--S------------------------------------------SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HhC--h------------------------------------------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 652 1 14688999999999999999999999999999
Q ss_pred HhcccC--CChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCC-h---HHHHHHHHHHHHHH
Q 001945 675 VRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDD-D---KDVVAQACTSIVEI 748 (992)
Q Consensus 675 ~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~~l~~~ 748 (992)
...++. .+.+.+..+.++++.++.+.. .......+..++..++..+.+...... + .......+..++.+
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-----~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLMSLLR-----PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHHHTSC-----TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 988876 456788888888888876421 000112233344444444444333221 1 23334566777777
Q ss_pred HHHhCCc------------ccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCC
Q 001945 749 INDYGYM------------AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP 816 (992)
Q Consensus 749 ~~~~g~~------------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 816 (992)
+..++.. .+.++.+.+++.+..++.... .+..+.+.++.+++.+++.+|+
T Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------------~~~~v~e~~~~~~~~~~~~~~~ 726 (971)
T 2x1g_F 665 FSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWV------------------EEIDVLEAACSAMKHAITNLRS 726 (971)
T ss_dssp HHHHTC-------------CCHHHHHTTHHHHHHHHHHTT------------------TCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHHHHHHHHHhhhh
Confidence 7766532 345567777777777765321 1224667788899999999999
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCc--hhhc----HhhhHHHHHHhcCC-------CChHhH
Q 001945 817 HFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP--IAAY----VDRVMPLVLKELAS-------PDAMNR 883 (992)
Q Consensus 817 ~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~--~~~~----~~~~~~~ll~~l~~-------~~~~vr 883 (992)
.+.||++.+++.+...++... -..++++++.+++.+|.. ..+. +..+...++..+.. .+++++
T Consensus 727 ~~~p~l~~~~~~l~~~~~~~~----~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~ 802 (971)
T 2x1g_F 727 SFQPMLQDLCLFIVASFQTRC----CAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTM 802 (971)
T ss_dssp --CTHHHHHHHHHHHHCC--C----CHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHH
T ss_pred hccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHH
Confidence 999999999999988776532 245899999999988763 3333 34444444444443 368899
Q ss_pred HHHHHHHHHHHhhcCcchh--hH-HHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhC
Q 001945 884 RNAAFCVGELCKNGGESAL--KY-YGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVN 940 (992)
Q Consensus 884 ~~a~~~l~~l~~~~~~~~~--~~-~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~ 940 (992)
+.....++.+..+.+..+. +. +..+++.....+..++ ..+...++..+.+++...
T Consensus 803 ~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~--~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 803 ETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE--SGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp HHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSC--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHhcC
Confidence 9999999999999987664 66 7888887666665322 333344666776666653
No 21
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.90 E-value=8.3e-18 Score=207.42 Aligned_cols=752 Identities=12% Similarity=0.104 Sum_probs=459.9
Q ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhhhhcc-cccHHH--
Q 001945 84 IESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTF-RPHFAD-- 159 (992)
Q Consensus 84 l~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~al~~l~~l~~~~~~~~-~~~~~~-- 159 (992)
++.+...+++..|+.+-..+..+-+. | +.|+-+ ...+. +.+..+|..|+..|...+...-..+ .+....
T Consensus 30 l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 30 LHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHFS----WQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHHH----HHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH
Confidence 34433347888999988888876653 3 355543 33343 4567899999999998876532222 122223
Q ss_pred --HHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHH
Q 001945 160 --MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-----GEEDVAVIAFEIFDE 232 (992)
Q Consensus 160 --i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-----~~~~~~~~~~~~l~~ 232 (992)
+++.+... .+ ..+.+|...+.++..++...-.. . +.++++.++ ..+++ +++.....++.+|..
T Consensus 103 ~~ll~~l~~~-~~-~~~~ir~kl~~~la~i~~~~~p~-~---Wp~~l~~l~----~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 103 AQLFTQITRF-AS-GSKIVLTRLCVALASLALSMMPD-A---WPCAVADMV----RLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp HHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHTTT-T---STTHHHHHH----HHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHhCcc-c---cchHHHHHH----HHHhhhccCCCcHHHHHHHHHHHHh
Confidence 44444442 22 35889999999999987653111 1 233444444 44433 244455666666666
Q ss_pred HhcCC-------------ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhh
Q 001945 233 LIESP-------------APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP 299 (992)
Q Consensus 233 l~~~~-------------~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~ 299 (992)
+.+.. ...+...++.+++.+..+..+...+..++..+++++...+.. +... ....++++.++.
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~-~~~~---~~~~~ll~~l~~ 248 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQL-EVPL---QDCEALIQAAFA 248 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTS-SCCG---GGTHHHHHHHHH
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC-CCCc---ccchHHHHHHHH
Confidence 55310 223456778888888877765543335777777776544431 1100 011567777776
Q ss_pred hhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-h---hchHHHHHHHHh-------hhcCCChhhHHHHHHHHHHHhhcC
Q 001945 300 LLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-K---HVFPPVFEFASV-------SCQNASPKYREAAVTAIGIISEGC 368 (992)
Q Consensus 300 ~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~---~~~~~~~~~l~~-------~l~~~~~~~r~~al~~l~~i~~~~ 368 (992)
.+.. +..+..+.+|+..+..... . ..+..+++.+.. ...+.+.......+..+..+++..
T Consensus 249 ~l~~---------~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 319 (963)
T 2x19_B 249 ALQD---------SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENH 319 (963)
T ss_dssp HTTS---------TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhCC---------chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 6632 3578889999888876432 1 222223332221 122333333344455566655543
Q ss_pred HHHHH------HhHHHHHHHHHhhcCC-----CChhHHHHHHHHHHHhHhhh-----------cHHHHhhhhhHHHHHHH
Q 001945 369 AEWMK------EKLESVLHIVLGALRD-----PEQFVRGAASFALGQFAEYL-----------QPEIVSHYESVLPCILN 426 (992)
Q Consensus 369 ~~~~~------~~l~~i~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~-----------~~~~~~~~~~ll~~l~~ 426 (992)
...+. +++..+++.++....+ .+..++..++.....+++.. ...+.+++..+++.++.
T Consensus 320 ~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 399 (963)
T 2x19_B 320 SRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLH 399 (963)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33332 4566778888877764 35677877887777776632 11234566777777777
Q ss_pred hcccCCh---------------HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHh----cCCCHhHHHHHHHHHHHH
Q 001945 427 ALEDESD---------------EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL----ENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 427 ~l~~~~~---------------~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l----~~~~~~v~~~a~~~l~~l 487 (992)
.+..+.. ..|..+..++..++...+.. .++.+++.+...+ .+.++..++.++.+++.+
T Consensus 400 ~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i 476 (963)
T 2x19_B 400 KAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSI 476 (963)
T ss_dssp HHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 6643221 12445556666666554432 3444555555555 556788999999999999
Q ss_pred HHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHH
Q 001945 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (992)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~ 567 (992)
+..+.+...++++++++.+.++ .++...+|..++.+++.++..++.. .++++.+++.+++.+++ +.++..+.
T Consensus 477 ~~~~~~~~~~~l~~l~~~l~~l----~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~--~~V~~~A~ 548 (963)
T 2x19_B 477 AETIDVNYSDVVPGLIGLIPRI----SISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN--PELSVSSV 548 (963)
T ss_dssp TTSCCSSCCSHHHHHHHHGGGS----CCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC--GGGHHHHH
T ss_pred HhhcCchhhHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 9887766677777777744322 1123457888999999988766532 24566777777777754 78999999
Q ss_pred HHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHH
Q 001945 568 GFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAA 647 (992)
Q Consensus 568 ~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 647 (992)
.++.++++.++..+.||++.++..+...++..+ . ..+.+..
T Consensus 549 ~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~-----~----------------------------------~~~~~~~ 589 (963)
T 2x19_B 549 STLKKICRECKYDLPPYAANIVAVSQDVLMKQI-----H----------------------------------KTSQCMW 589 (963)
T ss_dssp HHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTC-----S----------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----C----------------------------------ChHHHHH
Confidence 999999999999999999999999987664210 0 0135778
Q ss_pred HHHHHHHHHHHhc-ccccchHHHHHHHHHhccc-----CCChhHHHH---HHHHHHHHHHHHHHhhccC--C--------
Q 001945 648 ATQALGLFALHTK-SSYAPFLEESLKILVRHAS-----YFHEDVRYQ---AVFALKNILTAAHAIFQSH--N-------- 708 (992)
Q Consensus 648 a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-----~~~~~vr~~---a~~~l~~l~~~~~~~~~~~--~-------- 708 (992)
++++++.++...+ +...+|+..++..+...+. ..+++.+.. ..+++..+.+.+....... +
T Consensus 590 ~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 669 (963)
T 2x19_B 590 LMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLP 669 (963)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCC
Confidence 8999999887775 6788888888877665432 124555543 3444444444432111000 0
Q ss_pred --CChHHHHHHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 001945 709 --EGPAKAREILDTVMNIFIRTMTE-DDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDS 785 (992)
Q Consensus 709 --~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 785 (992)
..+....++.+.+++.+.+.+.. ..+..+...++.++...+..+|.. +.++++.+++.+...+...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~-~~~~l~~~~~~l~~~~~~~---------- 738 (963)
T 2x19_B 670 VPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD-FAPMVPQLCEMLGRMYSTI---------- 738 (963)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST-TGGGHHHHHHHHHHHHHHS----------
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc-ccccHHHHHHHHHHHHHcC----------
Confidence 01233566777777777766543 235677888889999988888844 4667777766665544331
Q ss_pred CCCCcccccchHHHHHHHHhHHHHHHHHhCC--ChHH----HHHHHHHHHHHhhcC-C-CCccchhhHHHHHHHHHhhcC
Q 001945 786 DIEDDDDTAHDEVIMDAVSDLLPAFAKSMGP--HFAP----IFAKLFDPLMKFAKS-S-RPLQDRTMVVATLAEVARDMG 857 (992)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~----~~~~l~~~l~~~l~~-~-~~~~~r~~al~~l~~~~~~~~ 857 (992)
... ++..+++.++..+|. .+.+ ++..++..++..+++ . +.+..+...+..+++++++++
T Consensus 739 ---------~~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~ 805 (963)
T 2x19_B 739 ---------PQA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKP 805 (963)
T ss_dssp ---------CCH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred ---------Ccc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCc
Confidence 011 234455666663333 2334 344444454444442 1 234689999999999999887
Q ss_pred Cchh--hc-HhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcC--cc----hhhHHHHHHHhhhhhhCCCCCChhhHhh
Q 001945 858 SPIA--AY-VDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG--ES----ALKYYGDILRGLYPLFGDSEPDDAVRDN 928 (992)
Q Consensus 858 ~~~~--~~-~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~--~~----~~~~~~~~l~~l~~~l~~~~~~~~~~~n 928 (992)
.... +. +..+++.++..++..+..+...++..+..++...+ +. +.++...++..+...+.+.. .....+.
T Consensus 806 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~ 884 (963)
T 2x19_B 806 DLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQA-SRSLMDC 884 (963)
T ss_dssp GGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTS-CGGGHHH
T ss_pred HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccC-ChhHHHH
Confidence 6542 44 88899999999999999999999999999997654 21 23566677777666665432 2233344
Q ss_pred HHHHHHHHHHhC
Q 001945 929 AAGAVARMIMVN 940 (992)
Q Consensus 929 ~~~~l~~l~~~~ 940 (992)
...++..++..+
T Consensus 885 ~~~il~~l~~~~ 896 (963)
T 2x19_B 885 FADILFALNKHC 896 (963)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC
Confidence 555565555544
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.89 E-value=6.6e-18 Score=206.57 Aligned_cols=717 Identities=10% Similarity=0.071 Sum_probs=427.2
Q ss_pred CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhhhh------cccc-cHHHHH
Q 001945 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTETIGQ------TFRP-HFADMQ 161 (992)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~l~~~~~~------~~~~-~~~~i~ 161 (992)
++..+| +-..+..+- .-|++...+.+.+.+ .+..+|..|...|...+...-. .+.+ .-..|-
T Consensus 17 pd~~~r--Ae~~L~~~~-------~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik 87 (960)
T 1wa5_C 17 ASTAKT--SERNLRQLE-------TQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK 87 (960)
T ss_dssp GGGHHH--HHHHHHHHH-------TSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH
T ss_pred CCHHHH--HHHHHHHhh-------cCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH
Confidence 456666 555555442 234566666666644 3568899999999987755321 2222 223455
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc--
Q 001945 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-- 239 (992)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-- 239 (992)
..+..++.+ ....+|..+..++..++...- ..-+|.+++.+.+.++++++..+..++.++..+++....
T Consensus 88 ~~ll~~l~~-~~~~ir~~l~~~ia~ia~~d~--------p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 88 KEIVPLMIS-LPNNLQVQIGEAISSIADSDF--------PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp HHHHHHHHH-SCHHHHHHHHHHHHHHHHHHS--------TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHhhC--------ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666 458999999999998887631 123466666666677777777888899999998875431
Q ss_pred -----------chHHHHHHHHHHHHHH---hhCCCCC-hHHHHHHHHHHHHHHHhh--------HhHhhhcCChHHHHHH
Q 001945 240 -----------LLGDSVKSIVHFSLEV---SSSHNLE-PNTRHQAIQIISWLAKYK--------YNSLKKHKLVIPILQV 296 (992)
Q Consensus 240 -----------~~~~~l~~li~~~~~~---~~~~~~~-~~~r~~a~~~l~~l~~~~--------~~~~~~~~~~~~il~~ 296 (992)
.+..+.+.+++.+... +.+...+ ...+ .+++++..+++.. |..... .+..+.+.
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~--~~~~~~~~ 235 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGI 235 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHH--THHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHH--HHHHHHHH
Confidence 1222333333333222 3322111 1222 2222222222111 111111 12223333
Q ss_pred HhhhhccCCC---CC-CCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHH
Q 001945 297 MCPLLAESNE---AG-EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM 372 (992)
Q Consensus 297 l~~~l~~~~~---~~-~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 372 (992)
+...+..... .+ ++++ .+..|+.|..++.++..+.+..++.+
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~----------------------------------~~~~~~vk~~~~~~l~~l~~~~~~~f 281 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEH----------------------------------ASVLIKVKSSIQELVQLYTTRYEDVF 281 (960)
T ss_dssp HHHHHSCCSCCCC------C----------------------------------CCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCCCCcccCCccccc----------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322100 00 0000 01125566677777777777777777
Q ss_pred HHhHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhHhhhc--HHHH--hhhhhHH-HHHHHhcc----c--------
Q 001945 373 KEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQ--PEIV--SHYESVL-PCILNALE----D-------- 430 (992)
Q Consensus 373 ~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~~~ll-~~l~~~l~----~-------- 430 (992)
.++++.+++.++..+. .....++..++..+..+++.-. ..+. +++..++ +.++..+. |
T Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 282 GPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 7777777777777664 3467888889888888775321 1111 4455555 44444431 1
Q ss_pred -----------CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhc------CCCHhHHHHHHHHHHHHHHHhh-
Q 001945 431 -----------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE------NSPRNLQETCMSAIGSVAAAAE- 492 (992)
Q Consensus 431 -----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~v~~~a~~~l~~l~~~~~- 492 (992)
.....|..|..+|..++...++.+ ++.+++.+...+. +.++..|+.|+.+++.++....
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~ 438 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNI 438 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 112567888999999988876443 3334444444443 4578899999999999975321
Q ss_pred -c-cCcc-----cHHHH-HHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhH
Q 001945 493 -Q-AFIP-----YAERV-LELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (992)
Q Consensus 493 -~-~~~~-----~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~ 564 (992)
+ .... .+..+ ...+...+...++....+|.+++.+++.++..+.+ .++.++++.+++.+.+++..++.
T Consensus 439 ~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~~V~~ 514 (960)
T 1wa5_C 439 TNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEYVVYT 514 (960)
T ss_dssp BTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCHHHHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCChhHHH
Confidence 1 1111 12221 12222233332212456788899999988765533 35778888888888887888999
Q ss_pred HHHHHHHHHHHHc-----------ccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcccc
Q 001945 565 YTHGFFSNIAGVL-----------EDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (992)
Q Consensus 565 ~~~~~~~~i~~~~-----------~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (992)
++..++.+++... +..+.||++.+++.++..++...+. .
T Consensus 515 ~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~--------~---------------------- 564 (960)
T 1wa5_C 515 YAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS--------P---------------------- 564 (960)
T ss_dssp HHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC--------H----------------------
T ss_pred HHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCC--------C----------------------
Confidence 9999999999852 3568899999999999877531000 0
Q ss_pred ceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q 001945 634 NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAK 713 (992)
Q Consensus 634 ~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 713 (992)
....+...++.+++.++...++.+.||++.+++.+...+. .
T Consensus 565 ------~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~-------------------~-------------- 605 (960)
T 1wa5_C 565 ------EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT-------------------I-------------- 605 (960)
T ss_dssp ------HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH-------------------H--------------
T ss_pred ------CcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------------------H--------------
Confidence 0001224678889999988899999998887765543221 0
Q ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccc
Q 001945 714 AREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDT 793 (992)
Q Consensus 714 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 793 (992)
...+..++......+++++.++...++....++.+.+++.+..++.... .
T Consensus 606 --------------~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~----------------~ 655 (960)
T 1wa5_C 606 --------------MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI----------------Q 655 (960)
T ss_dssp --------------HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC----------------T
T ss_pred --------------HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh----------------H
Confidence 0012234444455677888777766655666777888888887775421 1
Q ss_pred cchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHH--HhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHH
Q 001945 794 AHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLM--KFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLV 871 (992)
Q Consensus 794 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~--~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~l 871 (992)
+ +...+.++++.+.+.. ..+.+++..++|.+. ..++.. .........+..++..++..+.+ ++.++..+
T Consensus 656 ~----~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~ 726 (960)
T 1wa5_C 656 E----FIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIF 726 (960)
T ss_dssp T----THHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHH
T ss_pred h----hHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HHHHHHHH
Confidence 1 2223455666666665 667778888888887 655433 12334556666666555443322 34455555
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHhhcCcc-hhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHh-CCC-------
Q 001945 872 LKELASPDAMNRRNAAFCVGELCKNGGES-ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMV-NPQ------- 942 (992)
Q Consensus 872 l~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~-~~~------- 942 (992)
.+.+.+... +..|+..+|.++...+.. +.||++.+++.+.+.+.... .+..+...+..++.++.. +|+
T Consensus 727 ~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 803 (960)
T 1wa5_C 727 QRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSK-TERYVKKLTVFFGLISNKLGSDFLIHFID 803 (960)
T ss_dssp HHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCC-cHhHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 555555543 488999999999999887 99999999999988887542 233333344444444332 222
Q ss_pred CCC----hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhc
Q 001945 943 SIP----LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSS 980 (992)
Q Consensus 943 ~~~----~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~ 980 (992)
.++ ..-+...|+..++-..+..|.+.++.+++.++..+
T Consensus 804 ~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~ 845 (960)
T 1wa5_C 804 EVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING 845 (960)
T ss_dssp TTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC
T ss_pred hcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc
Confidence 121 12234488888876677899999999999999887
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.87 E-value=2.1e-19 Score=202.73 Aligned_cols=404 Identities=13% Similarity=0.093 Sum_probs=306.2
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhH--------hHhhh
Q 001945 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--------NSLKK 286 (992)
Q Consensus 215 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--------~~~~~ 286 (992)
+.+++.+++..|-..|.++... ..+.+...++.++.+.+.+..+|..|...+..++.... .....
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 3457788888888888775431 13344455555555655578999999988888764321 00010
Q ss_pred --cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCC--ChhhHHHHHHHH
Q 001945 287 --HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNA--SPKYREAAVTAI 361 (992)
Q Consensus 287 --~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~~al~~l 361 (992)
...-..+...+++.+.+.+. .. ..+..++..++.... ...||.+++.+...+.++ ++..|++++.++
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~-------~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETY-------RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCS-------SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCc-------hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 00112355556666654332 45 678888888887754 457899999999999888 999999999999
Q ss_pred HHHhhcC-HHHHHHhHHHHHHHHHhhcCCC--ChhHHHHHHHHHHHhHhhhcHHHHh--hhhhHHHHHHHhcccCChHHH
Q 001945 362 GIISEGC-AEWMKEKLESVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVK 436 (992)
Q Consensus 362 ~~i~~~~-~~~~~~~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~ 436 (992)
+.+++.. ++.+.++.+.+++.+...+.|+ ++.||..|+++++.+...+.+.... ....+++.+...+.++++.+|
T Consensus 155 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr 234 (462)
T 1ibr_B 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234 (462)
T ss_dssp HHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999865 5556677889999999999988 7999999999999987665432211 112357777777888889999
Q ss_pred HHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh---------------------cc
Q 001945 437 EKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE---------------------QA 494 (992)
Q Consensus 437 ~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---------------------~~ 494 (992)
..++.+|..++...++.+.+|++ .+++.+...+.+.+..+|..+++.++.++.... ..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 99999999999999888899999 999999999999999999999999999987631 11
Q ss_pred CcccHHHHHHHHHHHHhcc----ChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHH
Q 001945 495 FIPYAERVLELLKIFMVLT----NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFF 570 (992)
Q Consensus 495 ~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~ 570 (992)
+.++.+.++|.+.+.+... +++++..|..+..+++.++..+|. ..++.+++.+.+.+++++|.+|..++.++
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2345677888888877643 223456788899999999988763 44567788888888888999999999999
Q ss_pred HHHHHHcc-cCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHH
Q 001945 571 SNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAAT 649 (992)
Q Consensus 571 ~~i~~~~~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~ 649 (992)
+.++..+. ..+.++++.++|.++..++.. ...+|..|+
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~-----------------------------------------~~~Vr~~a~ 429 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDP-----------------------------------------SVVVRDTAA 429 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-----------------------------------------CHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCC-----------------------------------------CHHHHHHHH
Confidence 99998776 557899999999999877521 124799999
Q ss_pred HHHHHHHHHhcccc--cchHHHHHHHHHhcc
Q 001945 650 QALGLFALHTKSSY--APFLEESLKILVRHA 678 (992)
Q Consensus 650 ~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~ 678 (992)
++|+.++...+..+ .+|++.+++.++..+
T Consensus 430 ~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 430 WTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 99999999988765 589999999887655
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.83 E-value=6.7e-16 Score=176.39 Aligned_cols=706 Identities=12% Similarity=0.083 Sum_probs=418.8
Q ss_pred CCHHHHHHHHHHHHHhhhhh-hh--cccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhh-HH
Q 001945 130 EQEEHREVALILFSSLTETI-GQ--TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREF-IP 205 (992)
Q Consensus 130 ~~~~~~~~al~~l~~l~~~~-~~--~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~ 205 (992)
.+.+.|+.|+.=|-.++..- |. .|.. .-+..+.+.+.+..++++..+|++++..++....... ...+..+ +|
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~-~~~~~~~~~~ 95 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAELLYKD---HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT-KGVLTELGVP 95 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHHSCHH
T ss_pred cCHHHHHHHHhhceeeeccccchHHHHhC---chHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH-HHHHHHcCHH
Confidence 34466777766666665432 11 1222 1234555555554789999999999999988763211 1111222 24
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC----Ccc--------ch---HHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q 001945 206 SILNVSRQCLASGEEDVAVIAFEIFDELIES----PAP--------LL---GDSVKSIVHFSLEVSSSHNLEPNTRHQAI 270 (992)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~----~~~--------~~---~~~l~~li~~~~~~~~~~~~~~~~r~~a~ 270 (992)
.++. .+..++++....++.++..+... ..+ .. +..+..++..++....+..++...|..++
T Consensus 96 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~ 171 (810)
T 3now_A 96 WFMR----VLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVI 171 (810)
T ss_dssp HHHH----HHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHH----HHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHH
Confidence 4443 44556777776666666655432 111 11 23456677777778888888999999999
Q ss_pred HHHHHHHHhh----HhHhhhcCChHHHHHHHhhhhccCCCC----CCCCCCchHHHHHHHHHHHHHHcc-----hhchHH
Q 001945 271 QIISWLAKYK----YNSLKKHKLVIPILQVMCPLLAESNEA----GEDDDLAPDRAAAEVIDTMALNLA-----KHVFPP 337 (992)
Q Consensus 271 ~~l~~l~~~~----~~~~~~~~~~~~il~~l~~~l~~~~~~----~~d~~~~~~~~a~~~l~~l~~~~~-----~~~~~~ 337 (992)
+++..-+-+. +..+....-+..++. .-....+- .-.-..+.|..+.-++.++.+.+. +..-..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~----v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (810)
T 3now_A 172 ELITRNVHYTALEWAERLVEIRGLCRLLD----VCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQ 247 (810)
T ss_dssp HHHHHHTTCTTTTHHHHHHHTTHHHHHHH----HHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhCCccccccccchhhHhhHHHHHH----HHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 9887655322 111111112222333 22222211 001123678899999999998887 223344
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH--HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
+-.++...+...+...+..|.++++.+..+.++.-...+ ...++.++..+.++++.++..|.++++..+.. +....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~ 325 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAK 325 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHH
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHH
Confidence 556677777788888888999999999999876544433 36889999999999999999999999998776 33333
Q ss_pred hh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc--ccccc----chHHHHHHHHHHhcCC--CHhHHHHHHHHHHH
Q 001945 416 HY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILP----FLDPLMGKLLAALENS--PRNLQETCMSAIGS 486 (992)
Q Consensus 416 ~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~----~~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~ 486 (992)
++ ..-+|.|...+.+.+..+|..|..+|.++..... ....+ -.+.+++.+.+++.++ +.+++..++++++.
T Consensus 326 ~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLay 405 (810)
T 3now_A 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAY 405 (810)
T ss_dssp TTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 32 2224888899988888899989888888864332 11122 2568899999999988 88999999999999
Q ss_pred HHHHhhccCcccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhH-
Q 001945 487 VAAAAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE- 564 (992)
Q Consensus 487 l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~- 564 (992)
+.........-.. ..++|.|.+++... +..+...+..+++.++.........+.+..+-...-......++.-..
T Consensus 406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~ 482 (810)
T 3now_A 406 LTLDAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVD 482 (810)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHH
T ss_pred HhCCcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHH
Confidence 9754332111111 34677777777643 223344577888887753211111111100000000000000110000
Q ss_pred HHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhh
Q 001945 565 YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (992)
Q Consensus 565 ~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (992)
....-...+++ ...+|.++..+... ....
T Consensus 483 ~v~~r~~~Vve----------aGaVp~LV~LL~s~-----------------------------------------s~~v 511 (810)
T 3now_A 483 FINKRITVLAN----------EGITTALCALAKTE-----------------------------------------SHNS 511 (810)
T ss_dssp HHHHHHHHHHH----------TTHHHHHHHHHTCC-----------------------------------------CHHH
T ss_pred HHHHHHHHHHH----------CcCHHHHHHHHcCC-----------------------------------------CHHH
Confidence 00000111221 12556666655421 1146
Q ss_pred HHHHHHHHHHHHHHhcccccchH--HHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHH--HHHHHH
Q 001945 645 KAAATQALGLFALHTKSSYAPFL--EESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKA--REILDT 720 (992)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 720 (992)
|..|.++|+.++... .....+ ...++.++.++...++..|..|+.+|..+.... ++... ......
T Consensus 512 qe~Aa~aL~NLA~d~--~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~---------~p~~~~~~~~~~~ 580 (810)
T 3now_A 512 QELIARVLNAVCGLK--ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI---------NPEVSFSGQRSLD 580 (810)
T ss_dssp HHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS---------CHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC---------Chhhhhcchhhhc
Confidence 889999999987432 222222 223556677777778889999999999887531 12111 011223
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHH-HHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHH
Q 001945 721 VMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS-RLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVI 799 (992)
Q Consensus 721 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (992)
.++.|++.+..+.+......++.++..+... ++.......+ ..++.+..++.+.. ..+
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~--------------------~~V 639 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDH--------------------LYL 639 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCC--------------------TTH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCC--------------------HHH
Confidence 6777777776543434344566677666432 1110011111 23455555554422 124
Q ss_pred HHHHHhHHHHHHHHhCCCh-HHHH--HHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcH--hhhHHHHHHh
Q 001945 800 MDAVSDLLPAFAKSMGPHF-APIF--AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKE 874 (992)
Q Consensus 800 ~~~~~~~l~~l~~~~~~~~-~~~~--~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~--~~~~~~ll~~ 874 (992)
...++++|+.++. ++.. ..+. ...+|.++++++..+ ...+..|..+|+.+...........+ ...+|.++..
T Consensus 640 q~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~L 716 (810)
T 3now_A 640 TRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716 (810)
T ss_dssp HHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHH
Confidence 5567777777664 2222 2233 146788888887654 36788888999888763222222233 4688999999
Q ss_pred cCCCChHhHHHHHHHHHHHHhhcCcchhhHHH--HHHHhhhhhhCCCC-CChhhHhhHHHHHHHHHHh
Q 001945 875 LASPDAMNRRNAAFCVGELCKNGGESALKYYG--DILRGLYPLFGDSE-PDDAVRDNAAGAVARMIMV 939 (992)
Q Consensus 875 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~-~~~~~~~n~~~~l~~l~~~ 939 (992)
+.+.+.++|..|+++++.++..+++. ..++. ..++.|..++..++ .+..+++.|..+|..++..
T Consensus 717 L~s~d~~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 717 IANPSPAVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HTCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999865432 22222 35667777776542 4567899999999888875
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=6.7e-18 Score=189.46 Aligned_cols=401 Identities=15% Similarity=0.123 Sum_probs=276.9
Q ss_pred CCCcch---HHHHHHhhcCCCHHHHHHHHHHHHHhhhh-hhhcccccHH--HHHHHHHHhcCCCCChHHHHHHHHHHHHh
Q 001945 114 GEWPDL---LPFLFQFSQSEQEEHREVALILFSSLTET-IGQTFRPHFA--DMQALLLKCLQDETSNRVRIAALKAIGSF 187 (992)
Q Consensus 114 ~~~~~l---l~~l~~~l~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~--~i~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (992)
..|++. ++.+.+.++++++..|..|+..|..++.. ..+.....+. .+++.+...++++.++.+|..|+.++.++
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 589888 99999999999999999999999998642 1211122222 57888889999833899999999999999
Q ss_pred hcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHH
Q 001945 188 LEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTR 266 (992)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r 266 (992)
+....+. ...+. -...++.+.+.+.+++++++..++++|..++...+..-...+. .+++.++..+.+. .+..+|
T Consensus 93 ~~~~~~~--~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~ 167 (450)
T 2jdq_A 93 ASGNSLQ--TRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMT 167 (450)
T ss_dssp HSSCHHH--HHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHH
T ss_pred hcCCHHH--HHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHH
Confidence 8754221 11110 1234444555667788999999999999999865443222221 3566666666542 378999
Q ss_pred HHHHHHHHHHHHhh-HhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcch---hc-hHHHHHH
Q 001945 267 HQAIQIISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HV-FPPVFEF 341 (992)
Q Consensus 267 ~~a~~~l~~l~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~---~~-~~~~~~~ 341 (992)
..++.++..++... +.. .......+++.++..+.+.+ ...+..+..++..++...+. .+ -..+++.
T Consensus 168 ~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~l~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 168 RNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSD-------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp HHHHHHHHHHHCCSSSCC--CGGGTGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 99999999998643 221 11133556777777775432 26777888888887754321 11 1235666
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hh
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ES 419 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 419 (992)
+...+.+++|..|..++.+++.++.+........+ ..+++.+...+.++++.+|..|+++|+.++........... ..
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 66778899999999999999999988765433333 25889999999999999999999999999975433333333 47
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cccccch-HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc----
Q 001945 420 VLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ---- 493 (992)
Q Consensus 420 ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~---- 493 (992)
++|.++..+.++++.+|..++++|.+++.... ....... ..+++.|..++.+.+..++..++.+++.++...+.
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 398 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc
Confidence 89999999999999999999999999987632 2222222 35888999999999999999999999999886553
Q ss_pred ---cCcccHHHH-----HHHHHHHHhccChhhhHhHHHHHHHHHHH
Q 001945 494 ---AFIPYAERV-----LELLKIFMVLTNDEDLRSRARATELLGLV 531 (992)
Q Consensus 494 ---~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (992)
...+|...+ ++.+..+. ++++..++..++..+..+
T Consensus 399 ~~~~~~~~~~~l~~~g~~~~l~~l~---~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 399 NGTGINPYCALIEEAYGLDKIEFLQ---SHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp SCSCCCHHHHHHHHHHCHHHHHHHH---CHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCcHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 234565555 34555543 234445566666655543
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.82 E-value=2e-15 Score=172.45 Aligned_cols=668 Identities=12% Similarity=0.065 Sum_probs=418.9
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhCC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhc----
Q 001945 3 QSLELLLIQFL--MPDNDARRQAEDQIKRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH---- 67 (992)
Q Consensus 3 ~~l~~ll~~~~--s~d~~~r~~A~~~l~~~~~~---------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~---- 67 (992)
..+.+.++.+. +.|.+.|++|-.-|--+... .+.+..+..++.+.+++.+.-.|...|-....++
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 45666777765 56889999998888665432 2345677777776688888888877776665543
Q ss_pred ---ccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcc----cCCCC-------------CCcchHHHHHHhh
Q 001945 68 ---WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKY----AVPAG-------------EWPDLLPFLFQFS 127 (992)
Q Consensus 68 ---~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~----~~~~~-------------~~~~ll~~l~~~l 127 (992)
|..+. ...+.+.+.+ .++.+-..++.++..+... +.... ....++..+..++
T Consensus 86 ~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (810)
T 3now_A 86 KGVLTELG-------VPWFMRVLDQ-KHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSI 157 (810)
T ss_dssp HHHHHHSC-------HHHHHHHHHC-CSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-------HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHh
Confidence 22222 1256677775 6677777888888776542 11111 1233566666777
Q ss_pred cCCC--HHHHHHHHHHHHHhhhhhh----hcccccHHHHHHHHHHhcCC---------CCChHHHHHHHHHHHHhhcccC
Q 001945 128 QSEQ--EEHREVALILFSSLTETIG----QTFRPHFADMQALLLKCLQD---------ETSNRVRIAALKAIGSFLEFTN 192 (992)
Q Consensus 128 ~~~~--~~~~~~al~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~---------~~~~~vr~~a~~~l~~l~~~~~ 192 (992)
.+.. ...|..++.++..-+.+.. .-+.. ...+..++.-+-+- +....+|..+.-|+.++.+...
T Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 236 (810)
T 3now_A 158 TDRTISGAARDGVIELITRNVHYTALEWAERLVE-IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMY 236 (810)
T ss_dssp TCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHH-TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCC
T ss_pred hccccChhhHHHHHHHHHHhCCccccccccchhh-HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 6653 5678888888776653321 11111 01122222222111 0146799999999999988775
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH--HHHHHHHHHHhhCCCCChHHHHHHH
Q 001945 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAI 270 (992)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~li~~~~~~~~~~~~~~~~r~~a~ 270 (992)
-......|...+..++.. .+..++.+....+++++..++...+..-...+ ...++.++..+.++ ++.++..|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~--~~~~q~~A~ 311 (810)
T 3now_A 237 YDEAKARFTDQIDEYIKD---KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD--DELQQRVAC 311 (810)
T ss_dssp SHHHHHHHHHHHHHHHHH---HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH---HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC--CHHHHHHHH
Confidence 433445566666555553 34456777778889999999877655433333 13566666677666 788899999
Q ss_pred HHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---------hhchHHHHHH
Q 001945 271 QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---------KHVFPPVFEF 341 (992)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---------~~~~~~~~~~ 341 (992)
+.+..++.. +. .+.. ....-++.+..++...++ ..+..|..+|..++...+ +..+..+++.
T Consensus 312 ~al~~aa~~-~~-~R~~-I~~~gv~~L~~Ll~s~~~-------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~ 381 (810)
T 3now_A 312 ECLIAASSK-KD-KAKA-LCEQGVDILKRLYHSKND-------GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381 (810)
T ss_dssp HHHHHHTTS-HH-HHHT-THHHHHHHHHHHTTCSCH-------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHH
T ss_pred HHHHHHcCC-cH-HHHH-HHHcCcHHHHHHHcCCCH-------HHHHHHHHHHHHhccccccCccccchhhccHHHHHHH
Confidence 999887653 22 2221 222223556666653321 567778888888864321 1224567888
Q ss_pred HHhhhcCC--ChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--------
Q 001945 342 ASVSCQNA--SPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ-------- 410 (992)
Q Consensus 342 l~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------- 410 (992)
+..++.++ +...|..|+++|++++........-.. ...+|.++..++++++.+++.|.++|+.++....
T Consensus 382 l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l 461 (810)
T 3now_A 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM 461 (810)
T ss_dssp HHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH
Confidence 88888887 889999999999999986432211111 4688999999998899999999999999997431
Q ss_pred --------------------HHHH----hhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHH
Q 001945 411 --------------------PEIV----SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGK 464 (992)
Q Consensus 411 --------------------~~~~----~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~ 464 (992)
+... ..+ ...+|.|+..+.++++.+|..|+++|.+++.... .-... -...++.
T Consensus 462 ~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~ 540 (810)
T 3now_A 462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKA 540 (810)
T ss_dssp GGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHH
T ss_pred HHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHH
Confidence 0011 111 3688999999999999999999999999985422 11111 2256788
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHHHHHhhc--cCcc-cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhcc
Q 001945 465 LLAALENSPRNLQETCMSAIGSVAAAAEQ--AFIP-YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (992)
Q Consensus 465 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 541 (992)
|+.++.+++...|..|..++++++..... .|.. .....+|.|.+++... .....+..++.+++.++.. +.+.-.
T Consensus 541 Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~--~~~l~~~eAl~AL~NLa~~-~d~~~~ 617 (810)
T 3now_A 541 LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD--CTALENFESLMALTNLASM-NESVRQ 617 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC--CcHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 88889888999999999999999875432 1221 1233667777777532 1222233577788887742 111100
Q ss_pred CChH-HHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCch--hhhhHHHHhhccCCCCCccCCCCCcchhcccCC
Q 001945 542 PILP-PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFG 618 (992)
Q Consensus 542 ~~~~-~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (992)
..+. ..++.+...+.++++.++..+..++++++..-. ....+. ...++.|+..+..+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~------------------- 677 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE------------------- 677 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-------------------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-------------------
Confidence 0000 133444444445678899999999999985322 222333 24677777665421
Q ss_pred CCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchH--HHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 001945 619 GVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFL--EESLKILVRHASYFHEDVRYQAVFALKNI 696 (992)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (992)
..+.|..|+++|+.++...+......+ ...++.++.++...+.++|..|+.++..+
T Consensus 678 ----------------------d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 678 ----------------------DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 114688899999998874333222222 24566777778888999999999999888
Q ss_pred HHHHHHhhccCCCChHHHHHHH-HHHHHHHHHHHhhC--ChHHHHHHHHHHHHHHHH
Q 001945 697 LTAAHAIFQSHNEGPAKAREIL-DTVMNIFIRTMTED--DDKDVVAQACTSIVEIIN 750 (992)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~ 750 (992)
...- ++....+. ...++.|.+.+... .+.+++..+++++..++.
T Consensus 736 ~~~s----------~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 736 INAG----------EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HTTC----------HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HhCC----------HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 6531 11111111 12445555544332 467778888888877765
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.82 E-value=6.8e-15 Score=181.56 Aligned_cols=744 Identities=10% Similarity=0.085 Sum_probs=424.3
Q ss_pred CCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccc-ccHHHHHHHHHHhcC
Q 001945 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQALLLKCLQ 169 (992)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~ 169 (992)
++...|+.+-..+..+-+. | +.|.-+...+.. +.+..+|..|+..|...+...-..+. +....+-..+...+.
T Consensus 28 p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~ 101 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMII 101 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHH
Confidence 5566888888888877554 3 478776655533 45778999999999987754222221 222233344444433
Q ss_pred CC---C-----ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC----C
Q 001945 170 DE---T-----SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES----P 237 (992)
Q Consensus 170 ~~---~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~----~ 237 (992)
+. + ++.+|.....++..++...-.. .+.++++.+++ .++ .++.....++.+|..+.+. .
T Consensus 102 ~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~----~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 102 SMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIG----SSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHH----HHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHH----HHc-cChHHHHHHHHHHHHHHHHHHHhc
Confidence 21 1 4678888888888887653110 12334444444 443 3444444444444444321 1
Q ss_pred c------------cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-hhhcCChHHHHHHHhhhhccC
Q 001945 238 A------------PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-LKKHKLVIPILQVMCPLLAES 304 (992)
Q Consensus 238 ~------------~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~~~~il~~l~~~l~~~ 304 (992)
. ..+...++.+++.+..++.+.. +.+++..+++++..+....+.. ... ..+++.++..+..
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~~~~~~~aL~~l~~~l~wi~~~~~~~----~~ll~~l~~~~l~- 246 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-SSSLIVATLESLLRYLHWIPYRYIYE----TNILELLSTKFMT- 246 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCTHHHHS----SSHHHHHHTHHHH-
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCHHHHhh----hhHHHHHHHHhCC-
Confidence 1 2345567777887777776543 5778888988887766543321 111 1244444432221
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHc-chh----------chHHHHHHHHh-h-------------hcCCChhhHHHHHH
Q 001945 305 NEAGEDDDLAPDRAAAEVIDTMALNL-AKH----------VFPPVFEFASV-S-------------CQNASPKYREAAVT 359 (992)
Q Consensus 305 ~~~~~d~~~~~~~~a~~~l~~l~~~~-~~~----------~~~~~~~~l~~-~-------------l~~~~~~~r~~al~ 359 (992)
+ ...+..+.+|+..+.... +.. +++.++..+.. . ..+.++..+...+.
T Consensus 247 ~-------~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~ 319 (1049)
T 3m1i_C 247 S-------PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1049)
T ss_dssp S-------HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHH
T ss_pred C-------HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHH
Confidence 1 156778888887777542 111 11222332222 0 11223333334444
Q ss_pred HHHHHhhcCHHH------HHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhh------cHHHHhhhhhHHHHHHHh
Q 001945 360 AIGIISEGCAEW------MKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL------QPEIVSHYESVLPCILNA 427 (992)
Q Consensus 360 ~l~~i~~~~~~~------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~~~ll~~l~~~ 427 (992)
.+..+++...+. ..+++..+++.++.+...++..|+..|+.....+++.. .....+++..+++.++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~ 399 (1049)
T 3m1i_C 320 FLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIEN 399 (1049)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh
Confidence 444444322111 24556778898888888788899999998888887732 123456777888888876
Q ss_pred cccCC--------h--------------HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhc--CCCHhHHHHHHHH
Q 001945 428 LEDES--------D--------------EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE--NSPRNLQETCMSA 483 (992)
Q Consensus 428 l~~~~--------~--------------~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~v~~~a~~~ 483 (992)
+..++ + ..+..+..+|..++...+.. .++.+++.+...+. ..++..++.++.+
T Consensus 400 m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~---~l~~v~~~l~~~l~~~~~~W~~~eaal~a 476 (1049)
T 3m1i_C 400 MVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWA 476 (1049)
T ss_dssp CCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred cCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 63210 0 23445666777776544433 33444455545554 3578899999999
Q ss_pred HHHHHHHhhccC-cccHHHHHHHHHHHHhccC--hhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCc
Q 001945 484 IGSVAAAAEQAF-IPYAERVLELLKIFMVLTN--DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS 560 (992)
Q Consensus 484 l~~l~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 560 (992)
+|+++..+.+.. .++.+.+++.+..+..... ++...++..++.+++.++..+.. -..+++.+++.+++.+.++++
T Consensus 477 lgsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~~~~ 554 (1049)
T 3m1i_C 477 IGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHETHE 554 (1049)
T ss_dssp HHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcCCCH
Confidence 998876544322 2456777776665433221 23334454577888877765543 235788899999998988889
Q ss_pred hhhHHHHHHHHHHHHHcccCcc--------CchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccc
Q 001945 561 ELREYTHGFFSNIAGVLEDGFA--------QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (992)
Q Consensus 561 ~~r~~~~~~~~~i~~~~~~~~~--------~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (992)
.++..+..++.++++.++..+. ||++.++..+...++.- +
T Consensus 555 ~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~-------~------------------------- 602 (1049)
T 3m1i_C 555 GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-------Q------------------------- 602 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------C-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhC-------C-------------------------
Confidence 9999999999999999887664 99999998887665310 0
Q ss_pred cceeeecchhhhHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHhccc--------C---C-Chh-HHH--HHHHHHHH
Q 001945 633 RNISVRTGVLDEKAAATQALGLFALHTK--SSYAPFLEESLKILVRHAS--------Y---F-HED-VRY--QAVFALKN 695 (992)
Q Consensus 633 ~~~~~~~~~~~~k~~a~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~--------~---~-~~~-vr~--~a~~~l~~ 695 (992)
.+.....+++++.++...+ +...+|+..+++.+..... . . +++ ++. ..+.++..
T Consensus 603 ---------~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~ 673 (1049)
T 3m1i_C 603 ---------PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVA 673 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHH
Confidence 0123456788888877665 3456677666555432211 0 0 111 111 11223333
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhh-----------CCh-----H--HHHHHHHHHHHHHHHHhCC--c
Q 001945 696 ILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTE-----------DDD-----K--DVVAQACTSIVEIINDYGY--M 755 (992)
Q Consensus 696 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~-----~--~~~~~~~~~l~~~~~~~g~--~ 755 (992)
++..++.. ..+++..++..++..+.. ... + .........+..++..+.. .
T Consensus 674 ~~~~l~~~----------f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~ 743 (1049)
T 3m1i_C 674 VCTSMGAD----------FYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR 743 (1049)
T ss_dssp HHHHHGGG----------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333211 112222222222211110 000 0 1111222222223322211 1
Q ss_pred c----cHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001945 756 A----VEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMK 831 (992)
Q Consensus 756 ~----~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 831 (992)
. ..++++.++..+...+.+...+. .+. .+.++++.++..+|+.+.+++..+++.+..
T Consensus 744 ~l~~~~~~~~~~~l~~ll~~~~~~~~~~---------------~~~----~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~ 804 (1049)
T 3m1i_C 744 NLDDVVKVLVEPLLNAVLEDYMNNVPDA---------------RDA----EVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1049)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHSCGGG---------------CCT----HHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCccc---------------ccH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 12344444444444443322111 011 355778888888888888888887777655
Q ss_pred h----hcC--CCCccchhhHHHHHHHHHhhcCCchhh----cHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcC---
Q 001945 832 F----AKS--SRPLQDRTMVVATLAEVARDMGSPIAA----YVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGG--- 898 (992)
Q Consensus 832 ~----l~~--~~~~~~r~~al~~l~~~~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~--- 898 (992)
. +++ .+.+..|...+..++++++++...+.+ .+..++..++..+..+++.+...++..+..+.....
T Consensus 805 ~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~ 884 (1049)
T 3m1i_C 805 CTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG 884 (1049)
T ss_dssp HHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 4 332 223468999999999999987765432 256777788888999999999999999999877532
Q ss_pred c-c-----hhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHH
Q 001945 899 E-S-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIM 938 (992)
Q Consensus 899 ~-~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~ 938 (992)
+ . +..|+..+++.+...+.++. ....-+..+..+.+++.
T Consensus 885 ~~~~~~~f~~~~~~~l~~~~~~~l~~~~-h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 885 NVPFANEFHKNYFFIFVSETFFVLTDSD-HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHSTT-CGGGHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcch-HhhhHHHHHHHHHHHHH
Confidence 1 1 23456677776666666544 33334445667777665
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=1.2e-17 Score=187.40 Aligned_cols=398 Identities=12% Similarity=0.113 Sum_probs=277.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhccc-CCCHHHHH-HHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-
Q 001945 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA-KLSPQLKQ-LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA- 113 (992)
Q Consensus 37 ~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~-~~~~~~~~-~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~- 113 (992)
++.+++.+. +.++.+|..|+..|++.+...+. ....-... .+...|++.|.++.++.+|..++.+++.++......
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 677888775 56889999999999998764333 22111222 567788888886448999999999999998742110
Q ss_pred C--CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc
Q 001945 114 G--EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 114 ~--~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (992)
. .....+|.+.++++++++.+|..++.+|+.++...+..-.... ..+++.+...+.++.++.+|..|+.++++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 0 1256899999999999999999999999999875432111111 246778888888547899999999999999976
Q ss_pred c-CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH-HHHHHHHHHHhhCCCCChHHHHH
Q 001945 191 T-NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQ 268 (992)
Q Consensus 191 ~-~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~r~~ 268 (992)
. +... .......+|.++ ..+.+++++++..+++++..+....+....... ..+++.++..+.++ ++++|..
T Consensus 181 ~~~~~~-~~~~~~~l~~L~----~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~ 253 (450)
T 2jdq_A 181 KSPPPE-FAKVSPCLNVLS----WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSP 253 (450)
T ss_dssp SSSCCC-GGGTGGGHHHHH----HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHH
T ss_pred CCCCCC-HHHHHHHHHHHH----HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHH
Confidence 4 2111 111234445444 455678889999999999999875433222111 12344445555433 5667777
Q ss_pred HHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcC
Q 001945 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN 348 (992)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~ 348 (992)
++..+..++...+.... .+ .-..+++.+...+.+
T Consensus 254 a~~~L~~l~~~~~~~~~----------~~------------------------------------~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQ----------VI------------------------------------LNCSALQSLLHLLSS 287 (450)
T ss_dssp HHHHHHHHTTSCHHHHH----------HH------------------------------------HTTTHHHHHHHHTTC
T ss_pred HHHHHHHHhhCChHHHH----------HH------------------------------------HHCccHHHHHHHHcC
Confidence 76666655532211000 00 001245566667888
Q ss_pred CChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh-hh-hhHHHHHH
Q 001945 349 ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HY-ESVLPCIL 425 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~-~~ll~~l~ 425 (992)
+++..|..|+++++.++.+..+.....+ ..+++.++..+.++++.||..|+++|+.++....+.... .. ..++|.++
T Consensus 288 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLC 367 (450)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence 8999999999999999988766555444 368899999999999999999999999999864443333 22 46999999
Q ss_pred HhcccCChHHHHHHHHHHHHHHHhhccc-------cccchHHH-----HHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 426 NALEDESDEVKEKSYYALAAFCEDMGEE-------ILPFLDPL-----MGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 426 ~~l~~~~~~v~~~a~~~l~~l~~~~~~~-------~~~~~~~l-----~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
..+.++++.++..++++|.+++...+.. ..+|...+ ++.+..+..+++..+++.++.++..+.
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999866432 34666655 566777666667778888887776553
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.79 E-value=2.4e-16 Score=180.85 Aligned_cols=469 Identities=14% Similarity=0.175 Sum_probs=317.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
+.++++.+.++|.+.|+.+.-.+..+.+ +|+......+.+.+ ++++.+|..|...+.+. .+++..+.+.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~ 123 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLC 123 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHH
Confidence 3455555566666677776666665544 45554434444432 45667777766555443 2566777777
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCc--chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-ccccH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHF 157 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~ 157 (992)
..+.+++. ++++.||+.++.++..++... |+ .++ ++++.+.+++.++++.++..|+.+|..++...++. .....
T Consensus 124 ~~l~~~L~-d~~~~VRk~A~~al~~i~~~~-p~-~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLK-DEDPYVRKTAAVCVAKLHDIN-AQ-MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSS-CSCHHHHHHHHHHHHHHHHSS-CC-CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcC-CCChHHHHHHHHHHHHHHhhC-hh-hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 77888777 689999999999999999854 53 555 58899999999999999999999999998776543 23344
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC-
Q 001945 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES- 236 (992)
Q Consensus 158 ~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~- 236 (992)
...+..+.+.+.+ .++..+...++++..+.... + . ....+++.+...+++.++.++..|++++..+...
T Consensus 201 ~~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~--~---~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 201 PQNINKLLTALNE-CTEWGQIFILDCLSNYNPKD--D---R----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp HHHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCCS--H---H----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-CCchHHHHHHHHHHHhCCCC--h---H----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 5555566666666 67778887788776654321 1 1 1234555555567778889999999999998753
Q ss_pred --CccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCc
Q 001945 237 --PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (992)
Q Consensus 237 --~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~ 314 (992)
.+..+......+...++.+.. + ++++|..++..+..++...|..+.. ++. ..+... +|++.
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~~-~--d~~vr~~aL~~l~~i~~~~p~~~~~--~~~-------~~~~~~-----~d~~~ 333 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTLLS-G--EPEVQYVALRNINLIVQKRPEILKQ--EIK-------VFFVKY-----NDPIY 333 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHHTT-S--CHHHHHHHHHHHHHHHHHCCSTTTT--CTT-------TTSCCT-----TSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-C--CccHHHHHHHHHHHHHHhChHHHHH--HHH-------hheecc-----CChHH
Confidence 345566555666665554443 3 7899999999999888765554322 111 111111 12256
Q ss_pred hHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhH
Q 001945 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFV 394 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 394 (992)
.|..+.+.+..++ ...-+..+++.+..++.+.++..|..++.+++.++...+. ....+++.++..+.+....|
T Consensus 334 Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v 406 (591)
T 2vgl_B 334 VKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYV 406 (591)
T ss_dssp HHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHH
Confidence 7777766554433 3344566777777888899999999999999999998653 34577888888889999999
Q ss_pred HHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCC
Q 001945 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (992)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 473 (992)
+..+..++..+....+. ....+++.+...+.+ ..+.++..++|+++.+....++ .+.+++.+.+.+.+.+
T Consensus 407 ~~e~i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~ 477 (591)
T 2vgl_B 407 VQEAIVVIRDIFRKYPN----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDES 477 (591)
T ss_dssp HHHHHHHHHHHHHHSCS----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSC
T ss_pred HHHHHHHHHHHHHHCcc----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCC
Confidence 99999888888776532 234577788888874 4588999999999987654432 3566666766666678
Q ss_pred HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHH
Q 001945 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (992)
Q Consensus 474 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (992)
..+|..++.++..+....++.. ...+..+.+.... ++.+..+|.+|...+..+
T Consensus 478 ~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~-d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 478 TQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQ-DSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHT-TCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhh-cCCChHHHHHHHHHHHHH
Confidence 8999999999999887655432 1222322222221 223445677777766654
No 30
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.78 E-value=1.9e-14 Score=172.46 Aligned_cols=754 Identities=12% Similarity=0.123 Sum_probs=427.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc--cC-Chh
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF--TN-DGA 195 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~--~~-~~~ 195 (992)
.+..+.+.+.+++...|..|-..|..+-+. ++. +.....++ ..+.++.+|..|+..|.+.+.. .. +..
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-p~a----w~~~~~iL----~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDA----WQKADQIL----QFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-TTG----GGGHHHHH----HHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC-ccH----HHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 344444444455555788888888776443 221 22222223 2226789999999999887753 11 112
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 001945 196 EVVKFREFIPSILNVSRQCLASG-----EEDVAVIAFEIFDELIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~-----~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a 269 (992)
+...++ ..+++.+.+...++ ..-++.....++..++... |......++.++. .++. ++......
T Consensus 88 ~~~~Ir---~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~----~l~~---~~~~~~~~ 157 (1023)
T 4hat_C 88 HRIGIR---NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIG----SSSS---SVNVCENN 157 (1023)
T ss_dssp HHHHHH---HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHH----HTTT---CHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHH----HhcC---CHHHHHHH
Confidence 222233 23333333322111 2345556777777776653 2222333344433 3322 33334445
Q ss_pred HHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-C
Q 001945 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-N 348 (992)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~-~ 348 (992)
+.++..+.+.-.. ... ++...++ ....-+.+... +|.+++.+...+. +
T Consensus 158 L~iL~~L~EEV~~---------------------~~~----~~l~~~r-~~~lk~~l~~~-----~~~I~~ll~~iL~~~ 206 (1023)
T 4hat_C 158 MIVLKLLSEEVFD---------------------FSA----EQMTQAK-ALHLKNSMSKE-----FEQIFKLCFQVLEQG 206 (1023)
T ss_dssp HHHHHHHHHHHHT---------------------SCT----TTSCHHH-HHHHHHHHHHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---------------------hhh----ccchHHH-HHHHHHHHHHH-----HHHHHHHHHHHHhCC
Confidence 5555555432110 000 0001111 11111112221 4455555554443 3
Q ss_pred CChhhHHHHHHHHHHHhhcCHH-HHHHhHHHHHHHHH-hhcCCCChhHHHHHHHHHHHhHhh-h-cH--HHHhh----hh
Q 001945 349 ASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVL-GALRDPEQFVRGAASFALGQFAEY-L-QP--EIVSH----YE 418 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~-~-~~--~~~~~----~~ 418 (992)
.+......++.+++......+- .+.. ..+++.++ ..+. ++..|.+|+.||..+... . ++ ...+. +.
T Consensus 207 ~~~~l~~~~L~~l~s~l~WI~i~~i~~--~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~ 282 (1023)
T 4hat_C 207 ASSSLIVATLESLLRYLHWIPYRYIYE--TNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1023)
T ss_dssp SSCHHHHHHHHHHHHHTTTSCTHHHHS--SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHhcc--hhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence 4556677888888888876542 2221 24677777 6664 567999999999999862 2 12 12222 23
Q ss_pred hHHHHH-HH----------hc---ccCChHHHHHHHHHHHHHHHhhccccc--cchHHH----HHHHHHHhcCCCHhHHH
Q 001945 419 SVLPCI-LN----------AL---EDESDEVKEKSYYALAAFCEDMGEEIL--PFLDPL----MGKLLAALENSPRNLQE 478 (992)
Q Consensus 419 ~ll~~l-~~----------~l---~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~l----~~~l~~~l~~~~~~v~~ 478 (992)
.+++.+ .. .+ .+.+.......+..+..+.+.....+. |.+..+ +..|+.+...++.++-.
T Consensus 283 ~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~ 362 (1023)
T 4hat_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFK 362 (1023)
T ss_dssp HHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 333322 10 11 112244555667777777766543332 232333 44666666677888989
Q ss_pred HHHHHHHHHHHHhh------ccCcccHHHHHHHHHHHHhccC-------h------------hhhH-hHHHHHHHHHHHH
Q 001945 479 TCMSAIGSVAAAAE------QAFIPYAERVLELLKIFMVLTN-------D------------EDLR-SRARATELLGLVA 532 (992)
Q Consensus 479 ~a~~~l~~l~~~~~------~~~~~~~~~~~~~l~~~l~~~~-------~------------~~~~-~~~~~~~~l~~l~ 532 (992)
.+++.|..++...- ..+.|++.++.+.+..-+.... + ++.. .|. .-+++..++
T Consensus 363 ~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~-~Rd~L~~l~ 441 (1023)
T 4hat_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS-EREVLVYLT 441 (1023)
T ss_dssp HHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHH-HHHHHHHHh
Confidence 99999999987532 2356677777777766554322 1 1111 111 115555554
Q ss_pred HhhchhhccCChHHHHHHHHhccC--CCCchhhHHHHHHHHHHHHHcccC-ccCchhhhhHHHHhhccCCCCCccCCCCC
Q 001945 533 ESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDG-FAQYLPLVVPLAFSSCNLDDGSAVDIDGS 609 (992)
Q Consensus 533 ~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~~~~i~~~~~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~ 609 (992)
.-.+. .. ++.+++.+.+.+. ..+|..+++++.|+|.++.+..++ ..++++.++|.|++.+....+
T Consensus 442 ~l~~~-~~---~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~-------- 509 (1023)
T 4hat_C 442 HLNVI-DT---EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG-------- 509 (1023)
T ss_dssp HHCHH-HH---HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS--------
T ss_pred ccCHH-HH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc--------
Confidence 33333 21 2223333333333 357999999999999999887754 779999999999986642210
Q ss_pred cchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHH
Q 001945 610 DDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQA 689 (992)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a 689 (992)
+.....+|..+++++|.+++-+.. -..|++.++..+...+.+.++.+..+|
T Consensus 510 ----------------------------~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A 560 (1023)
T 4hat_C 510 ----------------------------KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMA 560 (1023)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 001123567888999998877643 245788888888888877788999999
Q ss_pred HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHH
Q 001945 690 VFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA-VEPYMSRLVDAT 768 (992)
Q Consensus 690 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~~l~~~l 768 (992)
+.++..++..+...+... .+....++++.++..+.+.... -+.+.+..++++++.+++..+... ...+++.+++.+
T Consensus 561 ~~al~~l~~~c~~~l~~~--~~~e~~p~~~~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~ 637 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQ--QPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLP 637 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSC--CTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhhcc--CCCCCchhHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhH
Confidence 999999999887654221 1111234667777777666543 355666789999999999887543 344566666655
Q ss_pred HHHHhhhhh--hcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCC----------
Q 001945 769 LLLLREEST--CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSS---------- 836 (992)
Q Consensus 769 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~---------- 836 (992)
...+..-.. .+....-. +.+.. ..+..+.+|++.+++.+|..|.+++..++|.+++..+.-
T Consensus 638 ~~~~~~l~~~~~~~~~~~~------d~~~~-~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~ 710 (1023)
T 4hat_C 638 NMAWDTIVEQSTANPTLLL------DSETV-KIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAA 710 (1023)
T ss_dssp HHHHHHHHHHHHHCTTGGG------CHHHH-HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhc------CHHHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544433211 01000000 01112 233467789999999999999999999999887653321
Q ss_pred -C-----Cc------cchhhHHHHHHHHHhhcCCc---hhhcHhhhHHHHHHhcCCCChHhHHH-HHHHHHHHHhhcCcc
Q 001945 837 -R-----PL------QDRTMVVATLAEVARDMGSP---IAAYVDRVMPLVLKELASPDAMNRRN-AAFCVGELCKNGGES 900 (992)
Q Consensus 837 -~-----~~------~~r~~al~~l~~~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~vr~~-a~~~l~~l~~~~~~~ 900 (992)
. .+ .+|...+..+...+...... ...+++.++..++.-..+..+..|.. ..++...++...++.
T Consensus 711 ~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~ 790 (1023)
T 4hat_C 711 EGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM 790 (1023)
T ss_dssp HCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG
T ss_pred CCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh
Confidence 0 00 12234455555555544321 12234444444444334455666654 456666777777777
Q ss_pred hhhHHHHHHHhhh----hhhCC-CCCChhhHhhHHHHHHHHHHhCCCC---CC---hhhHHHHHHhhCCCCCcHHhhHHH
Q 001945 901 ALKYYGDILRGLY----PLFGD-SEPDDAVRDNAAGAVARMIMVNPQS---IP---LNQVLPVLLKVLPLKEDFEESMAV 969 (992)
Q Consensus 901 ~~~~~~~~l~~l~----~~l~~-~~~~~~~~~n~~~~l~~l~~~~~~~---~~---~~~~l~~~l~~lp~~~d~~e~~~~ 969 (992)
+.+.++.+++.+. ++|.+ -++....|++....+.++...++.. +| ...++...+-..-- ...+-+..+
T Consensus 791 ~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h-~~r~~~~~~ 869 (1023)
T 4hat_C 791 IPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKH-NNRDVEVNG 869 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTC-CCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCC-CchHHHHHH
Confidence 7888888887653 55653 2567789999999999999988763 23 22344433333321 346677788
Q ss_pred HHHHHHHHhh
Q 001945 970 YNCISTLVLS 979 (992)
Q Consensus 970 ~~~l~~l~~~ 979 (992)
.++++.++.+
T Consensus 870 l~~~~~ll~~ 879 (1023)
T 4hat_C 870 LQIALDLVKN 879 (1023)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.78 E-value=1.3e-16 Score=182.05 Aligned_cols=391 Identities=15% Similarity=0.122 Sum_probs=280.3
Q ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC-----cchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhhcc
Q 001945 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTF 153 (992)
Q Consensus 80 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~ 153 (992)
...+++.|.+ .++.+|..++..+..++..... ..+ ..++|.+.+++.++ ++.++..++.+|..++...++..
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~-~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSS-CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCC-ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3456677775 6889999999999999865321 112 46899999999987 88999999999999986433221
Q ss_pred cccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001945 154 RPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (992)
Q Consensus 154 ~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~ 232 (992)
.... ...++.+..++.+ +++.+|..|+.+|++++...+...........+|.++ ..+.+.+++++..++++|..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~----~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL----GLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH----HGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH----HHhccCCHHHHHHHHHHHHH
Confidence 1111 2457788888887 8999999999999999875421111111123445554 45566788899999999999
Q ss_pred HhcCC-ccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCCh-HHHHHHHhhhhccCCCCCCC
Q 001945 233 LIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV-IPILQVMCPLLAESNEAGED 310 (992)
Q Consensus 233 l~~~~-~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~d 310 (992)
++... +..-......+++.++..+.++ ++.++..++.++..++...+..... .+ ..+++.++.++.+.
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~~v~~Lv~lL~~~------ 311 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQA--VIDVRIPKRLVELLSHE------ 311 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHH--HHHTTCHHHHHHGGGCS------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHH--HHhcCcHHHHHHHHCCC------
Confidence 99765 3332334455667777777655 7899999999999998654432221 11 13556666666543
Q ss_pred CCCchHHHHHHHHHHHHHHcc---hhch-HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHh
Q 001945 311 DDLAPDRAAAEVIDTMALNLA---KHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLG 385 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~---~~~~-~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~ 385 (992)
++..+..+..++..++...+ ..++ ..+++.+...+.+++|..|..|+++++.++.+.++.....+ ..+++.++.
T Consensus 312 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 312 -STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred -ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 24678888888888775333 1111 24677777888999999999999999999988766554443 357888999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcH--HHHhhh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc-------cc
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQP--EIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-------EI 454 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-------~~ 454 (992)
.+.++++.+|..|+++|+.++....+ ....++ ..+++.++..+.++++.++..++++|.+++...+. ..
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 470 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 99999999999999999999987543 333332 46899999999999999999999999999987643 23
Q ss_pred ccchHH-----HHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 455 LPFLDP-----LMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 455 ~~~~~~-----l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
.+|... .++.+..+..+++..+++.+..++..+.
T Consensus 471 ~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 345443 3667888888888999998888776554
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=4.9e-16 Score=178.32 Aligned_cols=508 Identities=12% Similarity=0.128 Sum_probs=334.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHh--C-C-CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLA--K-D-PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~--~-~-p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~ 78 (992)
.++.++-+.+.++|...|+.+-..+--+. - + +.....++.++ ++++..+|+.+...+...... .++....
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l 86 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKS-----QPDMAIM 86 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHH-----SHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHccc-----CchHHHH
Confidence 35667777788899888888888875432 2 2 24455666644 467899999999888876532 3444444
Q ss_pred HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH
Q 001945 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (992)
Q Consensus 79 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 158 (992)
+.+.+.+.|. ++++.+|..+..+++.+. .+ .-++.+++.+.+++.++++.+|..|..++..+....++.+.. .
T Consensus 87 ~~n~l~kdL~-~~n~~ir~~AL~~L~~i~---~~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~ 159 (591)
T 2vgl_B 87 AVNSFVKDCE-DPNPLIRALAVRTMGCIR---VD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--Q 159 (591)
T ss_dssp THHHHGGGSS-SSSHHHHHHHHHHHHTCC---SG-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--H
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHcCC---hH-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--c
Confidence 4555555566 589999988877777665 23 367888999999999999999999999999998865543321 3
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
.+++.+..+|.+ +++.|+..|+.++..+....++.. ...+.+..+..+...+.+.++..+...++.+..+....+
T Consensus 160 ~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~----~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~ 234 (591)
T 2vgl_B 160 GFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSN----LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD 234 (591)
T ss_dssp HHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCC----SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH
T ss_pred cHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCcc----chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh
Confidence 688999999998 999999999999999887543210 011223333333333445666666666776655543322
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh---HhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCch
Q 001945 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (992)
Q Consensus 239 ~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~ 315 (992)
.....+++.+.....+. ++.++..|+.++..+.... +..... ....+.+.+..++ ..+ .+.
T Consensus 235 ----~~~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~--~~~~~~~~L~~L~-~~d-------~~v 298 (591)
T 2vgl_B 235 ----REAQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKDSDYYNM--LLKKLAPPLVTLL-SGE-------PEV 298 (591)
T ss_dssp ----HHHHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBTTBSHHH--HHHHTHHHHHHHT-TSC-------HHH
T ss_pred ----HHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCCHHHHHH--HHHHHHHHHHHHh-cCC-------ccH
Confidence 33455666665555544 7789999988887765321 111110 1122333333333 222 268
Q ss_pred HHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHH
Q 001945 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395 (992)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 395 (992)
|..+...+..+....++.+.+.+-.+ . ...++++.+|..++..+..++.. .+++.+++.+...+.+.+..+|
T Consensus 299 r~~aL~~l~~i~~~~p~~~~~~~~~~-~-~~~~d~~~Ir~~al~~L~~l~~~------~nv~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 299 QYVALRNINLIVQKRPEILKQEIKVF-F-VKYNDPIYVKLEKLDIMIRLASQ------ANIAQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHCCSTTTTCTTTT-S-CCTTSCHHHHHHHHHHHHHTCCS------STHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhh-e-eccCChHHHHHHHHHHHHHHCCh------hhHHHHHHHHHHHHhcCCHHHH
Confidence 88999999998887664332221111 1 12244599999999999988765 2456788888899999999999
Q ss_pred HHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-CCH
Q 001945 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPR 474 (992)
Q Consensus 396 ~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~ 474 (992)
..++++++.++..+++ ....+++.++..+.+....++..++.++..++...+... +.++..|...+.+ ..+
T Consensus 371 ~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~ 442 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEP 442 (591)
T ss_dssp HHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSH
T ss_pred HHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCH
Confidence 9999999999998743 345678888888988888999999999999988766432 2344556666653 467
Q ss_pred hHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhc
Q 001945 475 NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG 554 (992)
Q Consensus 475 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 554 (992)
.++..+++++|..+....+ .+.++ ..++....++...+|..++.++..+....+ ....+.++.+++.
T Consensus 443 ~~~~~~~wilGey~~~~~~-----~~~~l---~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p-----~~~~~~i~~ll~~ 509 (591)
T 2vgl_B 443 DARAAMIWIVGEYAERIDN-----ADELL---ESFLEGFHDESTQVQLTLLTAIVKLFLKKP-----SETQELVQQVLSL 509 (591)
T ss_dssp HHHHHHHHHHHTTCTTCTT-----HHHHH---HHHSTTCSSSCHHHHHHHHHHHHHHHTTCC-----STTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccccC-----HHHHH---HHHHHhhccCCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHH
Confidence 8888888888866543322 22333 333333233344567777777777664332 2223444444443
Q ss_pred c-C-CCCchhhHHHHHHHHHH
Q 001945 555 F-G-LEFSELREYTHGFFSNI 573 (992)
Q Consensus 555 l-~-~~~~~~r~~~~~~~~~i 573 (992)
. . ++++++|+.+...+.-+
T Consensus 510 ~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 510 ATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHTTCCCHHHHHHHHHHHTTT
T ss_pred hhhcCCChHHHHHHHHHHHHH
Confidence 2 3 35789999998776644
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.77 E-value=8.1e-13 Score=158.47 Aligned_cols=748 Identities=12% Similarity=0.143 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCC---CHHHHHHHHHHHHHhhhhhhhc-
Q 001945 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE---QEEHREVALILFSSLTETIGQT- 152 (992)
Q Consensus 77 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~---~~~~~~~al~~l~~l~~~~~~~- 152 (992)
+.+.+.+-..+...+++..|+.+-..+..+-+. | +.|. .....+.++ +..+|..|+.+|...+...++.
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p-~aw~----~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~ 78 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--S-TGWK----ICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNES 78 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--T-THHH----HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--h-hHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 344444444555445789999998888887654 3 3554 334444432 6789999999999887744322
Q ss_pred ---ccc-cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHH
Q 001945 153 ---FRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAF 227 (992)
Q Consensus 153 ---~~~-~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~ 227 (992)
-.. .-+.+++.+...-.......+|.....++..++...-.. .+.++++.+++.+ +.++. ......+
T Consensus 79 ~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~----~~~~~~~~~~~~L 150 (980)
T 3ibv_A 79 NLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVI----AASSQSEFSNFYL 150 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHH----HHHCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHh----cCCChhHHHHHHH
Confidence 111 112344555442211245678988888888877543110 1333444444443 22222 2222333
Q ss_pred HHHHHH----hcCCc--------------cchHHH-HHHHHHHHHHHhhC--CCCChHHHHHHHHHHHHHHHhhHhHhhh
Q 001945 228 EIFDEL----IESPA--------------PLLGDS-VKSIVHFSLEVSSS--HNLEPNTRHQAIQIISWLAKYKYNSLKK 286 (992)
Q Consensus 228 ~~l~~l----~~~~~--------------~~~~~~-l~~li~~~~~~~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (992)
+++..+ ..... ..+... ++.+++.++.++.. ...+++++..+++++...+...+-...-
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~ 230 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV 230 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh
Confidence 444322 11110 001111 22223333322211 0014445555555555444322211110
Q ss_pred cCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhh
Q 001945 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (992)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (992)
-.++++.++..+... ..+.+|.+|+..+......
T Consensus 231 ---~~~ll~~l~~~L~~~---------~~r~~A~ecL~ei~~k~~~---------------------------------- 264 (980)
T 3ibv_A 231 ---NEPCMNLLYSFLQIE---------ELRCAACETMTEIVNKKMK---------------------------------- 264 (980)
T ss_dssp ---CHHHHHHHHHHTTSH---------HHHHHHHHHHHHHHHSCCC----------------------------------
T ss_pred ---cchHHHHHHHHcCCh---------HHHHHHHHHHHHHHHcCCC----------------------------------
Confidence 023444444444321 3444455554444332210
Q ss_pred cCHHHHHHhHHHH-HHHHHhhcC--CCChhHHHHHHHHHHHhHhhh------c--------HHHHhhhhhHHHHHHHhcc
Q 001945 367 GCAEWMKEKLESV-LHIVLGALR--DPEQFVRGAASFALGQFAEYL------Q--------PEIVSHYESVLPCILNALE 429 (992)
Q Consensus 367 ~~~~~~~~~l~~i-~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~------~--------~~~~~~~~~ll~~l~~~l~ 429 (992)
++.-.+.+..+ +..++..+. +.+..++...++.+..+++.+ + .....++..+++.++..+.
T Consensus 265 --~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~ 342 (980)
T 3ibv_A 265 --PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS 342 (980)
T ss_dssp --HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred --hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC
Confidence 00000000000 011111111 234444443333333332221 0 1123566789999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhc---------cccccchHHHHHHHHHHhcCCC----------------HhHHHHHHHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMG---------EEILPFLDPLMGKLLAALENSP----------------RNLQETCMSAI 484 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~---------~~~~~~~~~l~~~l~~~l~~~~----------------~~v~~~a~~~l 484 (992)
+++..|...++.++..++.... ....+++..+++.++..+.-++ .+.|......+
T Consensus 343 ~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~ 422 (980)
T 3ibv_A 343 DDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQ 422 (980)
T ss_dssp CSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHH
Confidence 9888898888888888876532 2234677777777777765211 12444444222
Q ss_pred HHHHHHhhccCccc-HHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhh-----ccCChHHHHHHHHhccC--
Q 001945 485 GSVAAAAEQAFIPY-AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR-----MEPILPPFVEAAISGFG-- 556 (992)
Q Consensus 485 ~~l~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~~i~~~l~~~l~-- 556 (992)
..++...++.+.++ ++.+.+.+.+.+....+.++..++.++-+++.++.++.... ..++++.+++.+...++
T Consensus 423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~ 502 (980)
T 3ibv_A 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ 502 (980)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC
Confidence 22222222332221 22444455554432234567778889999999988764311 22455666666555432
Q ss_pred ---CCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHh--hccCCCCCccCCCCCcchhcccCCCCCCCchhhhhcc
Q 001945 557 ---LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS--SCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERS 631 (992)
Q Consensus 557 ---~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (992)
.+++.+|..++.++++.++-+.. -..|++.+++.++. .+..
T Consensus 503 i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~~--------------------------------- 548 (980)
T 3ibv_A 503 VCRHPHPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIHN--------------------------------- 548 (980)
T ss_dssp TTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTTC---------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhccccccC---------------------------------
Confidence 56888999999999998887653 24677777777765 3221
Q ss_pred ccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCC-----Ch--------h--------HHHHHH
Q 001945 632 VRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYF-----HE--------D--------VRYQAV 690 (992)
Q Consensus 632 ~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~--------~--------vr~~a~ 690 (992)
....++..|+.++..+++.++..+.||++.++..+..++... .+ + -+..-.
T Consensus 549 --------~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~ 620 (980)
T 3ibv_A 549 --------TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLF 620 (980)
T ss_dssp --------CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHH
Confidence 111368899999999999999999999999999988776521 11 1 233445
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH----HHhhCChH-H---HHHHHHHHHHHHHHHhCCcc-----c
Q 001945 691 FALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIR----TMTEDDDK-D---VVAQACTSIVEIINDYGYMA-----V 757 (992)
Q Consensus 691 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~-----~ 757 (992)
++++.++... +..++....+++.+++.+.. .+...... + .....+.+++.+.+.+.... .
T Consensus 621 eaig~li~~~-------~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~ 693 (980)
T 3ibv_A 621 ETVGVLISSG-------NLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAW 693 (980)
T ss_dssp HHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSH
T ss_pred HHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcH
Confidence 5555555442 22233344455555544444 44322111 1 22245566676666553211 2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCC
Q 001945 758 EPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSR 837 (992)
Q Consensus 758 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 837 (992)
...+.++++.+...+..-. .+..+++.+..++..++..+|..+.|+++.++..++...+
T Consensus 694 ~~~f~~~~~~il~~l~~~~------------------~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~--- 752 (980)
T 3ibv_A 694 LASFNKASDEIFLILDRMG------------------FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID--- 752 (980)
T ss_dssp HHHHHHHHHHHHHHHHHSC------------------CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhcC------------------CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC---
Confidence 3455666666666665421 2235777888888888888888888888888887774322
Q ss_pred CccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHh----cCCCC---------hHhHHHHHHHHHHHHhhcC-cch--
Q 001945 838 PLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKE----LASPD---------AMNRRNAAFCVGELCKNGG-ESA-- 901 (992)
Q Consensus 838 ~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~----l~~~~---------~~vr~~a~~~l~~l~~~~~-~~~-- 901 (992)
. ..-...+.+++.++..++....+.+.++++.++.. +..+. .++|+.-...+..++.++- +.+
T Consensus 753 ~-~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s 831 (980)
T 3ibv_A 753 M-NELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFT 831 (980)
T ss_dssp T-TTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGS
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcC
Confidence 2 35778999999999999988888888888887664 33221 2255555566666766553 322
Q ss_pred ---hhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCC--CCCC------hhhHHHHHHhhCCCCC
Q 001945 902 ---LKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNP--QSIP------LNQVLPVLLKVLPLKE 961 (992)
Q Consensus 902 ---~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~--~~~~------~~~~l~~~l~~lp~~~ 961 (992)
.++++.++..+...-.+ -.+..+...|+..+.+++...+ +.+| ++ ++|..+. +|.+.
T Consensus 832 ~~n~~~l~~~l~~l~~~a~~-~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~-~p~~~ 899 (980)
T 3ibv_A 832 EENQVYFDPLINSILHFANL-VGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFE-MPVNP 899 (980)
T ss_dssp HHHHTTHHHHHHHHHHHC------CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHH-GGGC-
T ss_pred CcchHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHH-hhcCC
Confidence 24566777766544332 2346778889999999999853 3354 35 6776553 34443
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.77 E-value=3.8e-16 Score=178.20 Aligned_cols=364 Identities=15% Similarity=0.151 Sum_probs=260.0
Q ss_pred CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-hcccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccC
Q 001945 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (992)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (992)
.+...++.+.+.++++++..+..|+..|..++.... +...... ..+++.+..+|.++.++.+|..|+.+|.+++...+
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 466779999999999999999999999999875421 1111111 24688899999983389999999999999987542
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH-HHHHHHHHHHhhCCCCChHHHHHHHH
Q 001945 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (992)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~r~~a~~ 271 (992)
.......-...+|.++..+ .+++++++..++++|..++...+..-...+ ..+++.++.++.+. +..++..++.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL----~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~ 237 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLL----YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATW 237 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHH
Confidence 1111111134456666544 457899999999999999876543222211 13566666677653 7889999999
Q ss_pred HHHHHHHhh-HhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---hhch-HHHHHHHHhhh
Q 001945 272 IISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF-PPVFEFASVSC 346 (992)
Q Consensus 272 ~l~~l~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~-~~~~~~l~~~l 346 (992)
++..++... +... ......+++.++.++.+.+ ...+..+..++..++...+ ..++ ..+++.+...+
T Consensus 238 ~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~~~d-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL 308 (530)
T 1wa5_B 238 TLSNLCRGKKPQPD--WSVVSQALPTLAKLIYSMD-------TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308 (530)
T ss_dssp HHHHHHCCSSSCCC--HHHHGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHhCCCCCCCc--HHHHHhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH
Confidence 999998643 2110 0122346677777775432 2678888888888875432 1111 23566677778
Q ss_pred cCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHH
Q 001945 347 QNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCI 424 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l 424 (992)
.+++|..|..|+.+++.++.+........+ ..+++.++..+.++++.+|..|+++|+.++..........+ ..++|.+
T Consensus 309 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 899999999999999999987665443333 36889999999999999999999999999975433333333 5789999
Q ss_pred HHhcccCChHHHHHHHHHHHHHHHhhcc--ccccchH--HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 425 LNALEDESDEVKEKSYYALAAFCEDMGE--EILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 425 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~--~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
+..+.++++.+|..|+++|.+++..... ....++. .+++.|..++.+.+..++..++.++..+....+.
T Consensus 389 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999986532 2222222 4788899999999999999999999999886653
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.74 E-value=6e-16 Score=176.76 Aligned_cols=395 Identities=14% Similarity=0.147 Sum_probs=274.9
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccC-ChhhHHHHHhhHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHhcCCc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGE-EDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~~~~~l~~l~~~~~ 238 (992)
++.+...+.+ +++.+|..|+.++.+++.... +......-...+|.++.. +.+++ +.++..++++|..++...+
T Consensus 76 l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~l----L~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 76 LPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQF----LTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHH----HTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHH----hCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 5666777787 889999999999999977654 221111123456666654 45555 8899999999999998655
Q ss_pred cchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH---hhhcCChHHHHHHHhhhhccCCCCCCCCCCc
Q 001945 239 PLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (992)
Q Consensus 239 ~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~ 314 (992)
......+. ..++.++.++.++ ++.+|..++.+|..++...+.. +... ..++.++..+... .++.
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~----g~l~~Ll~lL~~~------~~~~ 218 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLAN----GALLPLLAQLNEH------TKLS 218 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHT----TCHHHHHHTCCTT------CCHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHC----CcHHHHHHHHhcC------CCHH
Confidence 43333332 3667777777665 7899999999999998654331 1122 2455556666332 1236
Q ss_pred hHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCC
Q 001945 315 PDRAAAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP 390 (992)
Q Consensus 315 ~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~ 390 (992)
.+..+..++..++...+ ......+++.+...+.+.++..+..++++|+.++.+........+ ..+++.++..+.++
T Consensus 219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 78888899988887643 233456788888889999999999999999999987665443333 25789999999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHH
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLA 467 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 467 (992)
++.||..|+++|+.++..........+ ..++|.++..+.++ ++.++..|+++|.+++...+......+ ..+++.|+.
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ 378 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
Confidence 999999999999999986533333333 56899999999988 899999999999999864333222222 256778888
Q ss_pred HhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh------h
Q 001945 468 ALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA------R 539 (992)
Q Consensus 468 ~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~ 539 (992)
++.+.+..++..++.+++.++.........++ ..+++.|..++... +..++..++.++..+....... .
T Consensus 379 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~~~~~~ 455 (528)
T 4b8j_A 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKTLAAGD 455 (528)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 88888999999999999999887433333333 23677777777653 2345667888888887543221 1
Q ss_pred ccCChHH-----HHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 540 MEPILPP-----FVEAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 540 ~~~~~~~-----i~~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
..++... .++.+.....+++.++++.+..++..+..
T Consensus 456 ~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp CCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1222221 23445555556778888888887776643
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.73 E-value=2e-14 Score=165.38 Aligned_cols=513 Identities=10% Similarity=0.069 Sum_probs=330.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh--CCC--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLA--KDP--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~--~~p--~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
+.++=+.+.++|...|+.+-..+--+. -.+ ......+..+. +++...|+++...+...... +++..-.+.
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~i 109 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDE-----RQDVHLLMT 109 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCC-----CHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCC-----CcHHHHHHH
Confidence 333334444555555555555543322 111 22334444444 56788898888877766532 466666677
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i 160 (992)
+.+.+.|. ++++.+|..+..+++.+.... -.+.+++.+..++.++++.+|..|..++..+....++.+. .+
T Consensus 110 n~l~kDL~-~~n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~ 180 (618)
T 1w63_A 110 NCIKNDLN-HSTQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----MF 180 (618)
T ss_dssp HHHHHHHS-CSSSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GG
T ss_pred HHHHHhcC-CCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HH
Confidence 78888887 589999999999999988532 3467799999999999999999999999999987775443 45
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhh-----------cCCHHHHHHHHHH
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA-----------SGEEDVAVIAFEI 229 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-----------~~~~~~~~~~~~~ 229 (992)
++.+..++.+ .++.|+.+|+.++..+....+ .....+..++|.++..+.+... ..++-.+..++++
T Consensus 181 ~~~l~~lL~D-~d~~V~~~Al~~L~~i~~~~~--~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 181 LPATKNLLNE-KNHGVLHTSVVLLTEMCERSP--DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGTTTSTTC-CCHHHHHHHHHHHHHHCCSHH--HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHhHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 6777788888 999999999999999876532 1133467788888888876543 2356677778888
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHhhCCC----CChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCC
Q 001945 230 FDELIESPAPLLGDSVKSIVHFSLEVSSSHN----LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (992)
Q Consensus 230 l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~----~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (992)
|..+....+..- ..+.+++..+....+ ....+...+..++..+.. .+. .....++.+...+.+.+
T Consensus 258 L~~l~~~~~~~~----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~------l~~~a~~~L~~~L~~~d 326 (618)
T 1w63_A 258 LRILGRNDDDSS----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESG------LRVLAINILGRFLLNND 326 (618)
T ss_dssp HHHHTTTCHHHH----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHH------HHHHHHHHHHHHHTCSS
T ss_pred HHHhCCCCHHHH----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHH------HHHHHHHHHHHHHhCCC
Confidence 888876554321 122333333332211 123455555555443321 111 11234455555555433
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh
Q 001945 306 EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (992)
Q Consensus 306 ~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (992)
. +.+..+..++..++...+.. +......+...+.+++...|..|+..+..++... ++..+++.+..
T Consensus 327 ~-------~vr~~aL~~L~~i~~~~p~~-~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~------nv~~iv~eL~~ 392 (618)
T 1w63_A 327 K-------NIRYVALTSLLKTVQTDHNA-VQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN------NIRGMMKELLY 392 (618)
T ss_dssp T-------TTHHHHHHHHHHHHHHHHHH-HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS------STHHHHHHHHH
T ss_pred C-------chHHHHHHHHHHHHhhCHHH-HHHHHHHHHHHccCCChhHHHHHHHHHHHHcccc------cHHHHHHHHHH
Confidence 2 78999999999988765532 2233445566788999999999999999998752 24566777777
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l 465 (992)
.+.+.+..+|..++.+++.++..+++.. ...++.+++.+.+....++..++..+..++...++ + ....+..+
T Consensus 393 ~l~~~d~e~r~~~v~~I~~la~k~~~~~----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~-l---~~~~v~~L 464 (618)
T 1w63_A 393 FLDSCEPEFKADCASGIFLAAEKYAPSK----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE-M---HAYTVQRL 464 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS-T---HHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh-H---HHHHHHHH
Confidence 7778899999999999999999875543 34556666666666556667777888888876553 2 23344555
Q ss_pred HHHhcC--CCHhHHHHHHHHHHHHHHHhhcc-------CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhc
Q 001945 466 LAALEN--SPRNLQETCMSAIGSVAAAAEQA-------FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (992)
Q Consensus 466 ~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 536 (992)
...+.+ ....+...+++++|..+....+. +...-..+++.+..++... .++..+|..++.++..+....+
T Consensus 465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCc
Confidence 555543 23344456899999998766431 1112234566677766532 2334556677777776654331
Q ss_pred hhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Q 001945 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIA 574 (992)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~ 574 (992)
...+.+...+-....+.+.++|+.+...+.-+.
T Consensus 544 -----~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 544 -----CTVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp -----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 222333333333455678899999998777654
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.73 E-value=9.9e-16 Score=174.96 Aligned_cols=362 Identities=14% Similarity=0.132 Sum_probs=256.8
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-hccccc-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh
Q 001945 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (992)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~~~~~-~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (992)
+-+|.+.+.+.++++..+..|+..|..++.... +..... -..+++.+..+|.++.++.+|..|+.+|.+++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 348888899999999999999999998875433 111111 124678888999983349999999999999987542211
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 001945 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (992)
....-...+|.+ ...+.+++++++..++++|..++...+..-...+. ..++.++..+... .+..++..++.++.
T Consensus 154 ~~~~~~g~i~~L----~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 154 KVVIDHGAVPIF----VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHTTHHHHH----HHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHH----HHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 111111334444 44566788999999999999998765442222221 2455566666322 37889999999999
Q ss_pred HHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcch---hch-HHHHHHHHhhhcCCC
Q 001945 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNAS 350 (992)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~~~ 350 (992)
.++...+.... .....+++.+..++...+ +..+..+..++..++..... .+. ..+++.+...+.+++
T Consensus 229 ~L~~~~~~~~~--~~~~~~l~~L~~lL~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 229 NFCRGKPQPSF--EQTRPALPALARLIHSND-------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHCSSSCCCH--HHHTTHHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHcCCCCCcH--HHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 98865422111 123456777777775433 36777888888887744321 111 235667777888999
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCC-ChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHh
Q 001945 351 PKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNA 427 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~ 427 (992)
+..|..|+.+|+.++.+........+ ..+++.+...+.++ ++.+|..|+++|+.++..........+ ..++|.++..
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 379 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999987765443333 35789999999988 999999999999999975433333333 4789999999
Q ss_pred cccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 428 LEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 428 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
+.+.++.++..|+++|.+++.........++ ..+++.|..++.+.+..++..++.+++.+....+.
T Consensus 380 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 380 LQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987433333333 36788899999999999999999999999876654
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=165.72 Aligned_cols=203 Identities=12% Similarity=0.125 Sum_probs=177.2
Q ss_pred HHHhhhcCCChhhHHHHHHHHHH-HhhcCHHHH--HHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhhc-HHHH-
Q 001945 341 FASVSCQNASPKYREAAVTAIGI-ISEGCAEWM--KEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQ-PEIV- 414 (992)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~-i~~~~~~~~--~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~~~- 414 (992)
-+.+.+.+.+|+.|.+|+..++. +.+++++.. ...+..++..+.+.+ +|.|..||..|+.+++.+++.++ +.+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44556789999999999999999 988766543 334567899999999 79999999999999999999998 7888
Q ss_pred hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh-
Q 001945 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE- 492 (992)
Q Consensus 415 ~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~- 492 (992)
+|...++|.++..+.|..+.|+.++..++..+++.+++... +|++.+++.+...+++.++.+|..++.++++++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999998865322 4599999999999999999999999999999999887
Q ss_pred --ccCcccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHH
Q 001945 493 --QAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (992)
Q Consensus 493 --~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 546 (992)
..+.+|+ +.++|.+.+.+.. .+..+|..|+++++.++..+|.+.+.|+++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4577899 9999999999953 4567889999999999999998778877755
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.71 E-value=6e-15 Score=174.44 Aligned_cols=509 Identities=10% Similarity=0.051 Sum_probs=312.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC---
Q 001945 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--- 113 (992)
Q Consensus 37 ~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~--- 113 (992)
++.+++.|.+ .+..+|..++..++.. .. ..........|++.|. +.++.+|..++.++..++......
T Consensus 117 i~~lv~~L~~-~~~~~r~~a~~~l~~~-~~------~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 117 HPTNVQRLAE-PSQMLKHAVVNLINYQ-DD------AELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ---------C-CSCHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHhcC-ccHHHHHHHHHHHHhh-hH------HHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3455565553 4567787777776643 11 1233555667777777 578999999999999998743111
Q ss_pred CCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhhccccc-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 114 GEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 114 ~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
..-++.++.|.+.+.++ ++..+..++.+|..+....... ... -...++.+..++++ +++.+|..|+.+|.+++...
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~-~~i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL-LAIFKSGGIPALVNMLGS-PVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHS
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH-HHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCC
Confidence 12356899999888754 7889999999999976542210 011 12468889999998 88999999999999998875
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHH-HHHHHHHHHHhhCCCCChHHHHHHH
Q 001945 192 NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAI 270 (992)
Q Consensus 192 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~r~~a~ 270 (992)
............+|.+ ...+.+++.+++..++.++..++......-.... ...++.++.++.+.+ ....+..+.
T Consensus 266 ~~~~~~v~~~g~v~~L----v~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~ 340 (780)
T 2z6g_A 266 EGAKMAVRLAGGLQKM----VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTS 340 (780)
T ss_dssp TTHHHHHHHTTHHHHH----HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHH----HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHH
Confidence 4321111112344444 4556667788888888888877643222111111 123445555555542 445555667
Q ss_pred HHHHHHHHhhHhHhhhcCCh-HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcC
Q 001945 271 QIISWLAKYKYNSLKKHKLV-IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQN 348 (992)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~ 348 (992)
.++..++.. +..... .+ ...++.++.++.+.+. ..+..+..++..++.... ......+++.+...+++
T Consensus 341 ~aL~~Ls~~-~~~~~~--i~~~g~l~~Ll~lL~~~~~-------~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~ 410 (780)
T 2z6g_A 341 RVLKVLSVC-SSNKPA--IVEAGGMQALGLHLTDPSQ-------RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 410 (780)
T ss_dssp HHHHHHHTS-TTHHHH--HHHTTHHHHHGGGTTCSCH-------HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred HHHHHhhcC-hHHHHH--HHHhchHHHHHHHHcCCch-------HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC
Confidence 777666642 111100 11 1356777777764422 466677788887776554 33456788888888999
Q ss_pred CChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCC-CC-hhHHHHHHHHHHHhHhhhcHH--HHh--hhhhHH
Q 001945 349 ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD-PE-QFVRGAASFALGQFAEYLQPE--IVS--HYESVL 421 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d-~~-~~vr~~a~~~l~~l~~~~~~~--~~~--~~~~ll 421 (992)
.+|..|..|+.+|+.++.+..+...... ...++.++..+.+ .+ ..||..|+++|+.++...+.. ... .-...+
T Consensus 411 ~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l 490 (780)
T 2z6g_A 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490 (780)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCH
Confidence 9999999999999999987654332222 2467777777765 33 489999999999998643221 111 124578
Q ss_pred HHHHHhcccCCh-HHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHHhcCCC----------------------HhHH
Q 001945 422 PCILNALEDESD-EVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSP----------------------RNLQ 477 (992)
Q Consensus 422 ~~l~~~l~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~----------------------~~v~ 477 (992)
|.|+..+.+++. .++..++++|.++....... .... ..+++.|+.++.+.+ ..++
T Consensus 491 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~ 569 (780)
T 2z6g_A 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569 (780)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence 999999988764 99999999999998532211 1111 134444555443322 3466
Q ss_pred HHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHH--HHHHHHh
Q 001945 478 ETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP--FVEAAIS 553 (992)
Q Consensus 478 ~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--i~~~l~~ 553 (992)
..++.+++.++..... ...+ ...++.|.+++... ...++..+..+++.++.. + .....+.+ .++.+.+
T Consensus 570 ~~a~~aL~~La~~~~~--~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~ 641 (780)
T 2z6g_A 570 EACTGALHILARDIHN--RIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTE 641 (780)
T ss_dssp HHHHHHHHHHTTSHHH--HHHHHHTCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcChhh--HHHHHHCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHH
Confidence 7777777777531110 0001 12456666666543 233455677777776521 1 11122222 4455666
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHcccC
Q 001945 554 GFGLEFSELREYTHGFFSNIAGVLEDG 580 (992)
Q Consensus 554 ~l~~~~~~~r~~~~~~~~~i~~~~~~~ 580 (992)
.+.++++++|..+..++.+++..-+..
T Consensus 642 Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 642 LLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 677888999999999999998765533
No 40
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.71 E-value=4.5e-12 Score=150.73 Aligned_cols=754 Identities=10% Similarity=0.085 Sum_probs=420.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc--C-Chh
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT--N-DGA 195 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~--~-~~~ 195 (992)
.+..+...+-+++...|..|-..|..+-+. + +-+..+...|..+.++.+|..|+..|.+.+... . +..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-p--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-P--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-S--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-c--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 556666666667777888888877765321 1 123344455555478999999999998887532 1 112
Q ss_pred hHHHHHhhHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHhhCCCCChHHHHHH
Q 001945 196 EVVKFREFIPSILNVSRQCLAS-----GEEDVAVIAFEIFDELIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (992)
Q Consensus 196 ~~~~~~~~~~~ll~~l~~~l~~-----~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a 269 (992)
+...++ ..+++.+.+...+ .++.++.....++..++... |......++.++..+ .. ++..+...
T Consensus 100 ~~~~LR---~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~----~~---~~~~~~~~ 169 (1073)
T 3gjx_A 100 QCEGIK---KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGAS----RT---SESLCQNN 169 (1073)
T ss_dssp HHHHHH---HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----HH---CHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHh----CC---CHHHHHHH
Confidence 222233 3344444332221 23556667777787777652 232344444454433 11 33444555
Q ss_pred HHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhc-C
Q 001945 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-N 348 (992)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~-~ 348 (992)
+.++..+.+.-....+. +....| ....-+.+.. .++.+++.+...+. +
T Consensus 170 L~IL~~L~EEV~d~~~~------------------------~l~~~r--~~~lk~~L~~-----~~~~Il~ll~~iL~~~ 218 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSG------------------------QITQVK--AKHLKDSMCN-----EFSQIFQLCQFVMENS 218 (1073)
T ss_dssp HHHHHHHHHHHTTSHHH------------------------HBCHHH--HHHHHHHHHH-----TCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccc------------------------cccHHH--HHHHHHHHHH-----HHHHHHHHHHHHhccc
Confidence 66665555421100000 000111 1111111221 25566666655553 3
Q ss_pred CChhhHHHHHHHHHHHhhcCHH-HHHHhHHHHHHHH-HhhcCCCChhHHHHHHHHHHHhHhh-hc---HHHHhhhhhHHH
Q 001945 349 ASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIV-LGALRDPEQFVRGAASFALGQFAEY-LQ---PEIVSHYESVLP 422 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~-~~---~~~~~~~~~ll~ 422 (992)
.+......++.+++......+- .+.. ..+++.+ ...+. ++.+|.+|+.||..+... .+ +.+...+..++.
T Consensus 219 ~~~~lv~~~L~~L~~~~sWI~i~~i~~--~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 219 QNAPLVHATLETLLRFLNWIPLGYIFE--TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHHHHS--SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHhcc--chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 4666778888999999887642 2221 2466766 46664 567999999999998764 21 122223333333
Q ss_pred HHHHhcc-------------cCChHHHHHHHHHHHHHHHhhc------cccccchHHHHHHHHHHhcCCCHhHHHHHHHH
Q 001945 423 CILNALE-------------DESDEVKEKSYYALAAFCEDMG------EEILPFLDPLMGKLLAALENSPRNLQETCMSA 483 (992)
Q Consensus 423 ~l~~~l~-------------~~~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~ 483 (992)
.+...+. +.+...-..-+..+..+.+... +.+.+++...++.++.+...++.++-+.++..
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~f 374 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEY 374 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3222221 1112223334455555544432 12344556666777887778899999999999
Q ss_pred HHHHHHHhh-c------------------------cCcccHHHHHHHHHHHHhccCh------h-------------hhH
Q 001945 484 IGSVAAAAE-Q------------------------AFIPYAERVLELLKIFMVLTND------E-------------DLR 519 (992)
Q Consensus 484 l~~l~~~~~-~------------------------~~~~~~~~~~~~l~~~l~~~~~------~-------------~~~ 519 (992)
|..+....- + .+.|++..+...+..-+....+ + +..
T Consensus 375 W~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ 454 (1073)
T 3gjx_A 375 WNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSIN 454 (1073)
T ss_dssp HHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHH
T ss_pred HHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHH
Confidence 998876532 1 1333444444444333332110 0 001
Q ss_pred hHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC--CCCchhhHHHHHHHHHHHHHcccC-ccCchhhhhHHHHhhc
Q 001945 520 SRARATELLGLVAESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDG-FAQYLPLVVPLAFSSC 596 (992)
Q Consensus 520 ~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~r~~~~~~~~~i~~~~~~~-~~~~l~~i~~~l~~~~ 596 (992)
++...-+++..+. .++++.. ...+++.+.+.++ ..+|..+++.+.++|.|+.+..+. =.+++|.+++.|++..
T Consensus 455 ly~~mrd~L~~lt-~l~~~~~---~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 455 LYKNMRETLVYLT-HLDYVDT---EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHH-HHCHHHH---HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCHHHH---HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 1111123333332 3333221 2223344333333 346999999999999998766643 3488999999999766
Q ss_pred cCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHh
Q 001945 597 NLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVR 676 (992)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 676 (992)
....+. ..-.-.+...++++|.+.+-+..+ ..|++.++..+..
T Consensus 531 e~~~~k------------------------------------d~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~L~~ 573 (1073)
T 3gjx_A 531 EQKRGK------------------------------------DNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNKLFE 573 (1073)
T ss_dssp HHSCSH------------------------------------HHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHH
T ss_pred cccccc------------------------------------chhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHHHHH
Confidence 432110 000113455668899887766543 4588888888888
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcc
Q 001945 677 HASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMA 756 (992)
Q Consensus 677 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 756 (992)
.+.+.+++|+.+|+.++..++..|+..+-... +....+++..++..+...... -.++.....+++++.+++..|...
T Consensus 574 ~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~--~~e~~p~i~~il~~~~~~~~~-l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 574 FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQ--VGEVMPFIDEILNNINTIICD-LQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCC--TTCSSCHHHHHHTSHHHHHTT-CCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888999999999999999998876553311 111223566666666555432 245666788899999999888543
Q ss_pred -cHHHHHHHHHHHHHHHhhhhhh-cCCCCCCCCCCcccccch-HHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 001945 757 -VEPYMSRLVDATLLLLREESTC-QQPDNDSDIEDDDDTAHD-EVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFA 833 (992)
Q Consensus 757 -~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 833 (992)
...+++.+++.....+..-... .+..+. - .+.+ -..+..+.+|...+++..|..|.+++..++|.+++..
T Consensus 651 ~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~-----~--~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y 723 (1073)
T 3gjx_A 651 VQEHLIEKYMLLPNQVWDSIIQQATKNVDI-----L--KDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY 723 (1073)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCGGG-----G--GCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCchh-----c--cChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3455666665554444332110 000000 0 0111 1223367778888999999999999999988777543
Q ss_pred cC------------C----CCcc------chhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHh----cCCCChHhHHH-H
Q 001945 834 KS------------S----RPLQ------DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKE----LASPDAMNRRN-A 886 (992)
Q Consensus 834 ~~------------~----~~~~------~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~----l~~~~~~vr~~-a 886 (992)
+. . +.+. +|...+..+...+..... .......++|.++.. -....++.|.. .
T Consensus 724 ~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~-~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~ev 802 (1073)
T 3gjx_A 724 KCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEV 802 (1073)
T ss_dssp HHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSC-HHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHH
T ss_pred HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHhHHHHHHHHHHHHhcCCcccccHHH
Confidence 21 1 1111 244455566665554322 222234444444443 33444555544 4
Q ss_pred HHHHHHHHhhcCcchhhHHHHHHHhhh----hhhCC-CCCChhhHhhHHHHHHHHHHhCCCC-C--Ch---hhHHHHHHh
Q 001945 887 AFCVGELCKNGGESALKYYGDILRGLY----PLFGD-SEPDDAVRDNAAGAVARMIMVNPQS-I--PL---NQVLPVLLK 955 (992)
Q Consensus 887 ~~~l~~l~~~~~~~~~~~~~~~l~~l~----~~l~~-~~~~~~~~~n~~~~l~~l~~~~~~~-~--~~---~~~l~~~l~ 955 (992)
+++...++...+..+.+.++.+++.+. ++|.+ -++....|.+....+.++...++.. + |. ..++...+-
T Consensus 803 L~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~w 882 (1073)
T 3gjx_A 803 LSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIW 882 (1073)
T ss_dssp HHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Confidence 566666777777777778888887643 55653 3567789999999999999987664 2 32 224544333
Q ss_pred hCCCCCcHHhhHHHHHHHHHHHhh
Q 001945 956 VLPLKEDFEESMAVYNCISTLVLS 979 (992)
Q Consensus 956 ~lp~~~d~~e~~~~~~~l~~l~~~ 979 (992)
..-- ...+-+..+.+.+..++.+
T Consensus 883 a~kh-~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 883 AFKH-TMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CChhHHHHHHHHHHHHHHH
Confidence 3211 3356667778888888765
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.67 E-value=3.4e-14 Score=165.77 Aligned_cols=456 Identities=10% Similarity=0.025 Sum_probs=303.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----------CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p----------~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 74 (992)
+..++..+.++|+.+|..|...|.++..++ +.+..++..+.++.++.+|..|+..|++.... ++
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~------~~ 89 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------RE 89 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC------hh
Confidence 455666667899999999999999887543 34677888887667899999999888865321 22
Q ss_pred HHH-----HHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC-C--CcchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001945 75 LKQ-----LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG-E--WPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (992)
Q Consensus 75 ~~~-----~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~-~--~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (992)
.+. .....|++.|.+ +++.++..++.++..++....+.. . -...+|.+.++++++++..+..+..+|..++
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 222 234567777774 789999999999999987532110 0 1568999999999998888888888898887
Q ss_pred hhhhhcccc-cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 001945 147 ETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (992)
Q Consensus 147 ~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (992)
...++.-.. .-...++.+...+.+.....++..++.++.++..... . ...+.. ...+..+...+.+++.+++..
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~-~--~~~l~~--~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-N--KPAIVE--AGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT-H--HHHHHH--TTHHHHHHTTTTCSCHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc-c--HHHHHH--CCCHHHHHHHHhcCCHHHHHH
Confidence 532211000 0113467777888875667788899999988875432 1 111111 123444445566778889999
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH---hhhcCChHHHHHHHhhhhc
Q 001945 226 AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLA 302 (992)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~ 302 (992)
++++|..+....+.. .....+++.++..+.++ ++++|..+...+..++...+.. +... ..++.++.++.
T Consensus 244 a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~~~----g~v~~Lv~lL~ 315 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQV----GGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHT----THHHHHHHHHH
T ss_pred HHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHc----CCHHHHHHHHH
Confidence 999999998765432 12235666666666654 7899999999999887643321 1121 24556666665
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHcch-----h-ch-HHHHHHHHhhhcCC-ChhhHHHHHHHHHHHhhcCHHHHHH
Q 001945 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAK-----H-VF-PPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKE 374 (992)
Q Consensus 303 ~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~-----~-~~-~~~~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~ 374 (992)
...+ .+..+..+..++..++...+. . +. ...++.+...+.++ ++..|..++++++.++.+.... ..
T Consensus 316 ~~~~-----~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~ 389 (644)
T 2z6h_A 316 RAGD-----REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-AP 389 (644)
T ss_dssp HHTT-----CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HH
T ss_pred ccCC-----cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HH
Confidence 4321 125677788888887643221 0 11 23566777777776 4899999999999998753221 11
Q ss_pred hH-HHHHHHHHhhcCCCC----------------------hhHHHHHHHHHHHhHhhhcHHHHhh--hhhHHHHHHHhcc
Q 001945 375 KL-ESVLHIVLGALRDPE----------------------QFVRGAASFALGQFAEYLQPEIVSH--YESVLPCILNALE 429 (992)
Q Consensus 375 ~l-~~i~~~l~~~l~d~~----------------------~~vr~~a~~~l~~l~~~~~~~~~~~--~~~ll~~l~~~l~ 429 (992)
.. ..+++.++..+.+.+ ..++..++.+|..++..- ..... -...++.++..+.
T Consensus 390 i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHc
Confidence 11 245666666665543 345556666666666543 12222 2468899999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhccccccchH--HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 490 (992)
+.++.++..++.+|.++...- .....+. ..++.|..++.+.+..+|..|..+++.++..
T Consensus 468 ~~~~~v~~~a~~aL~~l~~~~--~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHcCH--HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999987431 1111111 3466788888999999999999999988654
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=3.8e-16 Score=157.25 Aligned_cols=204 Identities=12% Similarity=0.147 Sum_probs=173.4
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPE 412 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~ 412 (992)
+.+.+-+.+.+.+.+.+|+.|.+|+..+..+.+++++.....+..+++.+...+. |++..||..|+.+++.++..+++.
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4444445566678899999999999999999988544333446788999999995 999999999999999999999888
Q ss_pred HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
+.+|...++|.++..+.|+++.||..++.++..++...+ ++.+++.+...+++.++.+|..++..++.+....+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 888999999999999999999999999999999987542 57788999999999999999999999999887764
Q ss_pred -c-cCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHH
Q 001945 493 -Q-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (992)
Q Consensus 493 -~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 546 (992)
+ .+.+|++.++|.+...+. |....+|..+..+++.++..+|.+.+.++++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLN---EPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred CCCccHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 3 467899999999999995 34567889999999999999998767777643
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.66 E-value=3.8e-14 Score=167.55 Aligned_cols=466 Identities=10% Similarity=0.031 Sum_probs=300.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~----------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 74 (992)
+..++..+.++|..+|..|...|.++..+ ++.+..|+..+.++.++.+|..|+..|++..... .....-
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i 230 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAI 230 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence 45566666688999999999999888652 4578889999887778999999999998853221 000000
Q ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-CC--CcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh
Q 001945 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GE--WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-~~--~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~ 151 (992)
........|++.|.+ .++.+|..++.++..++...... .. -...++.+..++.+++..++..++.++..++....+
T Consensus 231 ~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 231 FKSGGIPALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 112344567777774 68999999999999998753210 00 145789999999998888888888888877642211
Q ss_pred cccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001945 152 TFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (992)
Q Consensus 152 ~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (992)
.-.... ...++.+...+.++....++..++.++..+.... .......-.. .+..+...+.+.+.+.+..++++|
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g----~l~~Ll~lL~~~~~~~~~~a~~~L 384 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAG----GMQALGLHLTDPSQRLVQNCLWTL 384 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTT----HHHHHGGGTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhc----hHHHHHHHHcCCchHHHHHHHHHH
Confidence 100000 1346667777887455566777888888887543 2111100112 334444556677888999999999
Q ss_pred HHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCC
Q 001945 231 DELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGED 310 (992)
Q Consensus 231 ~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d 310 (992)
..++...+... ....+++.++..+.++ ++++|..+..++..++...+...... .-...++.++.+|....+
T Consensus 385 ~~L~~~~~~~~--~~~~~i~~Lv~lL~~~--d~~vr~~A~~aL~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~---- 455 (780)
T 2z6g_A 385 RNLSDAATKQE--GMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMV-CQVGGIEALVRTVLRAGD---- 455 (780)
T ss_dssp HHHHTTCTTCS--CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHH-HTTTHHHHHHHHHHHHTT----
T ss_pred HHHhccchhhh--hhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHH-HHCCCHHHHHHHHHccCC----
Confidence 99987654421 2245666666666654 78999999999998876433211110 001245556666654221
Q ss_pred CCCchHHHHHHHHHHHHHHcch------hch-HHHHHHHHhhhcCCC-hhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHH
Q 001945 311 DDLAPDRAAAEVIDTMALNLAK------HVF-PPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKL-ESVLH 381 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~~------~~~-~~~~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~ 381 (992)
....+..+..+|..++...+. .+. ...++.+...+.+++ |..|..++++|+.++.+.... .... ..+++
T Consensus 456 -~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~ 533 (780)
T 2z6g_A 456 -REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIP 533 (780)
T ss_dssp -CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHH
Confidence 015677788888777543221 011 123555666676655 799999999999998643221 1111 13556
Q ss_pred HHHhhcCCCC----------------------hhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHHHH
Q 001945 382 IVLGALRDPE----------------------QFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKE 437 (992)
Q Consensus 382 ~l~~~l~d~~----------------------~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~ 437 (992)
.++..+.+.+ ..++..++.+|+.++.. +.....+ ...++.|+..+.+.++.++.
T Consensus 534 ~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 611 (780)
T 2z6g_A 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQR 611 (780)
T ss_dssp HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHH
Confidence 6666554433 34666777777777643 2222222 46789999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchH--HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 438 KSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 438 ~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.++.+|.++... ......+. ..++.|..++.+.+..+|..|..++..++...+
T Consensus 612 ~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 612 VAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999998633 11222222 256778888999999999999999999876443
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.63 E-value=1.4e-13 Score=157.90 Aligned_cols=453 Identities=11% Similarity=0.028 Sum_probs=293.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~~----------p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~ 74 (992)
+..++..+.++|+.+|..|...|.++..+ ++.++.++..+.++.++.+|..|+..|++.... ++
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~------~~ 92 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------RE 92 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS------HH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC------ch
Confidence 45566666788999999999999887643 346778888887777889999999999885322 22
Q ss_pred HHHH-----HHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC-CC--CcchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001945 75 LKQL-----VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GE--WPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (992)
Q Consensus 75 ~~~~-----i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-~~--~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~ 146 (992)
.+.. ....|++.|.+ +++.++..++.++..++...... .. -...+|.+.+++.++++..+..+..++..++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3332 34467777774 78999999999999998753210 00 1467899999999999889988888888876
Q ss_pred hhhhhcccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 001945 147 ETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (992)
Q Consensus 147 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~ 225 (992)
...++.-.... ...++.+...+.++....++..+..++.++.... +. ...+.. ...++.+...+.+++++++..
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~--~g~~~~L~~ll~~~~~~~~~~ 246 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SN--KPAIVE--AGGMQALGLHLTDPSQRLVQN 246 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-TH--HHHHHH--TTHHHHHHTTTTSSCHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-cc--HHHHHH--CCCHHHHHHHHhCCChHHHHH
Confidence 43221100001 1245666677776456667778888888887533 21 111110 123444445666778889999
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH---hhhcCChHHHHHHHhhhhc
Q 001945 226 AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLA 302 (992)
Q Consensus 226 ~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~ 302 (992)
+++++..+....+... ....+++.++..+.++ ++++|..+...+..++...+.. +... ..++.++.++.
T Consensus 247 a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----~~v~~L~~ll~ 318 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQV----GGIEALVRTVL 318 (529)
T ss_dssp HHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHHHHHHHHHT----THHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHc----CChHHHHHHHH
Confidence 9999999987654321 2235566666666544 7899999999999887643322 2222 24555666665
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHHHHcch------hch-HHHHHHHHhhhcCCC-hhhHHHHHHHHHHHhhcCHHHHHH
Q 001945 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAK------HVF-PPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKE 374 (992)
Q Consensus 303 ~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~------~~~-~~~~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~ 374 (992)
..++ .+..+..+..++..++...+. .+. ...++.+...+.+++ |..|..++++++.++.+.... ..
T Consensus 319 ~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~ 392 (529)
T 1jdh_A 319 RAGD-----REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-AP 392 (529)
T ss_dssp HHTT-----CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HH
T ss_pred ccCC-----HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HH
Confidence 4321 125677788888877643221 111 123556666677765 899999999999999753321 12
Q ss_pred hH-HHHHHHHHhhcCCCChhHHHHHHHHHHH----------------------hHhhhcHHHHhh--hhhHHHHHHHhcc
Q 001945 375 KL-ESVLHIVLGALRDPEQFVRGAASFALGQ----------------------FAEYLQPEIVSH--YESVLPCILNALE 429 (992)
Q Consensus 375 ~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~----------------------l~~~~~~~~~~~--~~~ll~~l~~~l~ 429 (992)
.. ..++|.++..+.++++.+|..|+|+++. ++.. +..... -...++.++..+.
T Consensus 393 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~ 470 (529)
T 1jdh_A 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLY 470 (529)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHc
Confidence 22 2578888888888888888877776665 2221 111111 1357799999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHHHHHHH
Q 001945 430 DESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l 487 (992)
++++.++..+++++.++...- .....+ ...++.|..++.++++.++..+..++..+
T Consensus 471 ~~~~~v~~~a~~~l~~l~~~~--~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 471 SPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCH--HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999999986321 111111 14567788888999999999999988765
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.63 E-value=2.3e-13 Score=153.21 Aligned_cols=362 Identities=15% Similarity=0.142 Sum_probs=247.9
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh-cccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhh
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (992)
-++.+.+.+++++...+..|...+..+...-.. -+...+ ..++|.|.++|+.+.++.++..|+++|.+++...++...
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 378899999999999999999999988643221 111111 136889999998757799999999999999865422111
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCC---ChHHHHHHHHH
Q 001945 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNL---EPNTRHQAIQI 272 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~---~~~~r~~a~~~ 272 (992)
...-...+|.++. .+.+++++++..|+++|..++...+..-...+. ..++.++.++..++. .......+...
T Consensus 138 ~vv~~GaIp~Lv~----lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 138 AVVDGGAIPAFIS----LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 1111234555554 567789999999999999998765543222221 234555556554421 23445556666
Q ss_pred HHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcch---hc-hHHHHHHHHhhhcC
Q 001945 273 ISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HV-FPPVFEFASVSCQN 348 (992)
Q Consensus 273 l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~---~~-~~~~~~~l~~~l~~ 348 (992)
+..++...... ........+++.+..++...++ ..+..+..++..++..... .+ -..+++.+...+.+
T Consensus 214 L~nl~~~~~~~-~~~~~~~~~lp~L~~LL~~~~~-------~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 214 LSNLCRNKNPA-PPLDAVEQILPTLVRLLHHNDP-------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHCCCSSC-CCHHHHHHHHHHHHHHTTCSCH-------HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHhhcccch-hHHHHHHhHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 66665432110 0001234577777777765433 5677788888877653321 11 12346667777889
Q ss_pred CChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHH
Q 001945 349 ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILN 426 (992)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~ 426 (992)
+++..+..++.+++.++.+........+ ...++.+...+.++++.+|..|+|+|+.++........... ..++|.++.
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999887654332222 24677888889999999999999999999876543333322 478999999
Q ss_pred hcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 427 ALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 427 ~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.+.+.+..+|..|+++|.+++.........++ ...++.|..++...+.+++..+++++..+....+
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999876543222222 2567888999999999999999999999987654
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.63 E-value=2.7e-13 Score=158.13 Aligned_cols=472 Identities=9% Similarity=0.031 Sum_probs=298.9
Q ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC---CCCcchHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhhhhcccc
Q 001945 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRP 155 (992)
Q Consensus 80 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~l~~~~~~~~~~ 155 (992)
...|+..|. +.++.+|..++.+++.++...... ..-+..++.+.+.+.++ ++..+..+..+|..+.........-
T Consensus 16 i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 445666666 578999999999999999754211 01246788899988765 7889999999999877543211000
Q ss_pred cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (992)
Q Consensus 156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~ 235 (992)
.-...++.+..++++ +++.++..|+.+|.+++...+.......-...+|.++ ..+.+++++.+..++.+|..++.
T Consensus 95 ~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv----~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 95 FKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV----ALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH----HGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH----HHHCcCCHHHHHHHHHHHHHHHh
Confidence 011467888899998 8899999999999999877533211111123444444 56667777777888888888875
Q ss_pred CCccchHHHH-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhH--hHhhhcCChHHHHHHHhhhhccCCCCCCCCC
Q 001945 236 SPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (992)
Q Consensus 236 ~~~~~~~~~l-~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~ 312 (992)
..+..-.... ...++.++.++.+.+ .+..+..+..++..++.... ..+... ..++.+++++...+
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~----g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEA----GGMQALGLHLTDPS------- 237 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHT----THHHHHHTTTTCSC-------
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHC----CCHHHHHHHHhcCC-------
Confidence 4332111111 124555566665553 56677777777777764211 111111 25666777765432
Q ss_pred CchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCC
Q 001945 313 LAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP 390 (992)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~ 390 (992)
...+..+..++..++...+ ......+++.+...+.+.++..|..|+.+|+.++.+..+...... ...++.++..+.+.
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence 2567778888888876554 334456788888889999999999999999999886543322222 23677888887752
Q ss_pred --ChhHHHHHHHHHHHhHhhhcH--HHHh--hhhhHHHHHHHhcccCC-hHHHHHHHHHHHHHHHhhccccccc-hHHHH
Q 001945 391 --EQFVRGAASFALGQFAEYLQP--EIVS--HYESVLPCILNALEDES-DEVKEKSYYALAAFCEDMGEEILPF-LDPLM 462 (992)
Q Consensus 391 --~~~vr~~a~~~l~~l~~~~~~--~~~~--~~~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~ 462 (992)
++.||..|+++|+.++...+. ..+. .....++.+.+.|.+++ +.++..++++|.++....... ... -..++
T Consensus 318 ~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i 396 (644)
T 2z6h_A 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAI 396 (644)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCH
Confidence 379999999999999864322 1111 12467899999999875 689999999999987543221 111 11345
Q ss_pred HHHHHHhcCC----------------------CHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhh
Q 001945 463 GKLLAALENS----------------------PRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDL 518 (992)
Q Consensus 463 ~~l~~~l~~~----------------------~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 518 (992)
+.|+.++.+. +..++..+..++..++..... ...+ ...++.+.+++...+ .
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~~l~~~~~i~~Lv~lL~~~~---~ 471 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPI---E 471 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHHTTCSC---H
T ss_pred HHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HHHHHhCCcHHHHHHHHcCCC---H
Confidence 5555555442 244666677777766542211 1111 124666777775432 2
Q ss_pred HhHHHHHHHHHHHHHhhchhhccCChH--HHHHHHHhccCCCCchhhHHHHHHHHHHHHHcc
Q 001945 519 RSRARATELLGLVAESVGRARMEPILP--PFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (992)
Q Consensus 519 ~~~~~~~~~l~~l~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~ 578 (992)
.++..+..++..++.. + .....+. ..++.+.+.+.++++++|..+..+++.++..-+
T Consensus 472 ~v~~~a~~aL~~l~~~--~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 472 NIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHcC--H-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 3455677777776531 1 1111111 134455666778899999999999999876543
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.63 E-value=2e-13 Score=154.78 Aligned_cols=366 Identities=15% Similarity=0.131 Sum_probs=251.9
Q ss_pred CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh-cccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccC
Q 001945 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (992)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (992)
.....++.+.+.+.+++...+..++..+..+...-.. .+...+ ..++|.|.++|..+.++.++..|+.+|.+++...+
T Consensus 73 ~~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 73 TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp GSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 3455689999999999999999999999887643221 111111 23688899999865779999999999999987653
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCC---ChHHHHH
Q 001945 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNL---EPNTRHQ 268 (992)
Q Consensus 193 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~---~~~~r~~ 268 (992)
.......-...+|.++ .++.+++++++..|+++|..++...+..-...+. ..++.++.++...+. .......
T Consensus 153 ~~~~~vv~~Gaip~Lv----~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFI----SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp HHHHHHHHTTHHHHHH----HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHH----HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 2211111123455554 4667889999999999999998765543222222 134555555554421 2344555
Q ss_pred HHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcch---hc-hHHHHHHHHh
Q 001945 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HV-FPPVFEFASV 344 (992)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~---~~-~~~~~~~l~~ 344 (992)
+...+..++...... ........+++.+..++...++ ..+..+..++..++..... .+ -..+++.+..
T Consensus 229 a~~~L~nl~~~~~~~-~~~~~~~~~lp~L~~LL~~~~~-------~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPA-PPLDAVEQILPTLVRLLHHNDP-------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp HHHHHHHHHCCCTTC-CCHHHHHHHHHHHHHHTTSSCH-------HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHhcccch-hhHHHHhhHHHHHHHHhcCCcH-------HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 666666666432111 0001234577777777765433 5677788888877754321 11 1234566677
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLP 422 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~ 422 (992)
.+.++++..+..++.+++.++.+........+ ...++.+...+.++++.+|..|+|+|+.++........... ..++|
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~ 380 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 380 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHH
Confidence 78899999999999999999987654332222 24678888899999999999999999999876543333322 46899
Q ss_pred HHHHhcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 423 CILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.++..+.+.+..+|..|+++|.+++.........++ ..+++.|+.++...+.+++..++.++..+....+
T Consensus 381 ~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 381 FLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999876543222222 2467888999999999999999999999987654
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.62 E-value=3.4e-12 Score=146.79 Aligned_cols=476 Identities=12% Similarity=0.092 Sum_probs=307.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~---~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i 79 (992)
-.-+++..+.|+|-+.|+-+.-.+..+.. +|+......+.+. +++++.+|..|...+.+.. +++..+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l 143 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDL 143 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHH
Confidence 34567777889999999999999987765 5675554445444 3678999999998887763 45666777
Q ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh---ccccc
Q 001945 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ---TFRPH 156 (992)
Q Consensus 80 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~---~~~~~ 156 (992)
...+.+.|. ++++.||+.++.++..+++.. |+ ..+.+++.+..++.++++.++..|+.++..++...++ .+...
T Consensus 144 ~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~-p~-~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 144 AGEVEKLLK-TSNSYLRKKAALCAVHVIRKV-PE-LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHHHHHHHC-GG-GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHHHC-hH-HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 888888887 589999999999999999753 42 4557788888899999999999999999999876543 33444
Q ss_pred HHHHHHHHHHhcCC----------CCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHH--hhcCCHHHHH
Q 001945 157 FADMQALLLKCLQD----------ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC--LASGEEDVAV 224 (992)
Q Consensus 157 ~~~i~~~l~~~l~~----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~--l~~~~~~~~~ 224 (992)
++.++..+...... .+++-.+...++++..+.... +... ..+.+.+...+... .+..+..+..
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~---~~~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSS---EAMNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHH---HTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHH---HHHHHHHHHHHhccccccchHHHHHH
Confidence 55566665554321 147778888888888877543 1111 12222222211110 0112235666
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccC
Q 001945 225 IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES 304 (992)
Q Consensus 225 ~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~ 304 (992)
.|.+++..+.. .+ ......++.+..++.++ ++.+|..++..+..++...|..+.. ....++..+.+.
T Consensus 296 ea~~~i~~l~~-~~----~l~~~a~~~L~~~L~~~--d~~vr~~aL~~L~~i~~~~p~~~~~------~~~~i~~~l~d~ 362 (618)
T 1w63_A 296 ETVLTIMDIKS-ES----GLRVLAINILGRFLLNN--DKNIRYVALTSLLKTVQTDHNAVQR------HRSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHSCC-CH----HHHHHHHHHHHHHHTCS--STTTHHHHHHHHHHHHHHHHHHHGG------GHHHHHHGGGSS
T ss_pred HHHHHHHhcCC-CH----HHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHhhCHHHHHH------HHHHHHHHccCC
Confidence 77777766532 11 12223445555555554 7799999999999999877765543 233445555432
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHH
Q 001945 305 NEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVL 384 (992)
Q Consensus 305 ~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~ 384 (992)
+...|..+.+++..++..- -+..+++.+...+.+.+...|..++.+++.++...+.. ....++.++
T Consensus 363 -------d~~Ir~~alelL~~l~~~~---nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~----~~~~v~~ll 428 (618)
T 1w63_A 363 -------DVSIKRRAMELSFALVNGN---NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS----KRWHIDTIM 428 (618)
T ss_dssp -------CHHHHHHHHHHHHHHCCSS---STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC----HHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHHcccc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHH
Confidence 2367888888776665432 23455555666666788899999999999999865433 345566666
Q ss_pred hhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccc--CChHHHHHHHHHHHHHHHhhccc----ccc--
Q 001945 385 GALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEE----ILP-- 456 (992)
Q Consensus 385 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~----~~~-- 456 (992)
..+.+....++..+...+..+....++ .. ...++.++..+.+ ....+...++|.++.+....... ..|
T Consensus 429 ~lL~~~~~~v~~~~~~~l~~ii~~~p~-l~---~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~ 504 (618)
T 1w63_A 429 RVLTTAGSYVRDDAVPNLIQLITNSVE-MH---AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ 504 (618)
T ss_dssp HHHHHTGGGSCSSHHHHHHHHHHHSCS-TH---HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred HHHHhccchhHHHHHHHHHHHHhcChh-HH---HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccC
Confidence 767766666777777777777765432 22 2345556666553 22344556899999998765321 001
Q ss_pred -chHHHHHHHHHHhc--CCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 457 -FLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 457 -~~~~l~~~l~~~l~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
.-..+++.+...+. ..+..+|..++.++..+....++ ..+.+...+..+. .+.+..+|.+|...+..+.
T Consensus 505 ~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~---~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 505 VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYG---SSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHc
Confidence 12234444444443 45788999999999988776542 2333444444432 2345567777887777654
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.59 E-value=4.5e-13 Score=150.85 Aligned_cols=398 Identities=11% Similarity=0.103 Sum_probs=257.7
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh-hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
++-+.+.+.+ .+++.+..|+..+.++....+.+. +...-...+|.+++.|. .+++++++..|.++|..++...+.
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~---~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3445677888 899999999999999876544322 11112345666666442 235678899999999999876655
Q ss_pred chHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHh---HhhhcCChHHHHHHHhhhhccCCCCCCCCCCch
Q 001945 240 LLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN---SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (992)
Q Consensus 240 ~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~ 315 (992)
.....+. ..++.++..+.++ +.++|..|..+|..++...+. .+...+. ++.++.++...+.+ ......
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~----i~~Ll~lL~~~~~~--~~~~~~ 206 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGA----IDPLLALLAVPDLS--TLACGY 206 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC----HHHHHHHTCSSCGG--GSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC----hHHHHHHHHhccch--hhhHHH
Confidence 4333333 2566777777665 789999999999999865433 2223333 34444555443210 011123
Q ss_pred HHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCC
Q 001945 316 DRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP 390 (992)
Q Consensus 316 ~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~ 390 (992)
...+..++..++.... -.....++|.+...+.+++...+..++++++.++.+..+...... ..+++.++..+.++
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 4445666666655332 123356788888889999999999999999999987665433322 34788899999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHH
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAA 468 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~ 468 (992)
++.++..++++++.++........... ...++.+...+.++++.+|..|+++|.+++...+....... ..+++.|+.+
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999875433222222 46778888889999999999999999999765433222222 2578889999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch----hhccC
Q 001945 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR----ARMEP 542 (992)
Q Consensus 469 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~ 542 (992)
+.+.+..+|..|..+++.++.........++ ..+++.|.+++...+ ..++..+++++..+.+...+ +.+..
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d---~~i~~~~L~aL~nil~~~~~~~~~~~~~~ 443 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD---TKIIQVILDAISNIFQAAEKLGETEKLSI 443 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhHhccchHHHHH
Confidence 9999999999999999999875432222222 125667777776543 23445677777776643211 11111
Q ss_pred ChHH--HHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 543 ILPP--FVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 543 ~~~~--i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
.+.+ .++.+.....+++.++++.+...+.+.
T Consensus 444 ~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 444 MIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1111 233333333456777877776655443
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.59 E-value=8.5e-13 Score=149.62 Aligned_cols=398 Identities=11% Similarity=0.102 Sum_probs=259.5
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChh-hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 239 (992)
++.+.+.+.+ +++..+..|+.++.++......+. +...-...+|.+++.+. .+++++++..++++|..++...+.
T Consensus 78 l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~---~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 78 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT---CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc---CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3445667788 899999999999998876543321 11112356677776542 245678899999999999876654
Q ss_pred chHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHh---HhhhcCChHHHHHHHhhhhccCCCCCCCCCCch
Q 001945 240 LLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN---SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (992)
Q Consensus 240 ~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~ 315 (992)
.....+. ..++.++..+.++ +.+++..|+.+|..++...+. .+...+ .++.++.++...+.+ ......
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g----~i~~Ll~lL~~~~~~--~~~~~~ 225 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHG----AIDPLLALLAVPDLS--TLACGY 225 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT----CHHHHHHTTCSSCGG--GSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcC----CcHHHHHHHhccchh--HhHHHH
Confidence 4333332 2566777777666 789999999999999864433 222222 344455555543211 011123
Q ss_pred HHHHHHHHHHHHHHcc----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCC
Q 001945 316 DRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP 390 (992)
Q Consensus 316 ~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~ 390 (992)
...+..++..++.... -.....++|.+...+.+++...+..++++++.++.+..+...... ..+++.++..+.++
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 3445566666654332 123356788888899999999999999999999988765433322 35788899999999
Q ss_pred ChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHH
Q 001945 391 EQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAA 468 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~ 468 (992)
++.++..|+.+|+.++.......... -...++.+...+.++++.+|..|+++|.+++...+....... ..+++.|+.+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999986543222222 256788899999999999999999999999865443322222 2578889999
Q ss_pred hcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch----hhccC
Q 001945 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR----ARMEP 542 (992)
Q Consensus 469 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~ 542 (992)
+.+.+..++..|..+++.++.........++ ..+++.|.+++...+ ..++..++.++..+...... +.+..
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d---~~i~~~~L~aL~nil~~~~~~~~~~~~~~ 462 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD---TKIIQVILDAISNIFQAAEKLGETEKLSI 462 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhHhccChHHHHH
Confidence 9999999999999999999875432222222 125677777776543 23445577777776643211 11111
Q ss_pred ChHH--HHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 543 ILPP--FVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 543 ~~~~--i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
.+.+ .++.+.....+++.++++.+...+...
T Consensus 463 ~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 463 MIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1111 123333333356778888776655543
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.59 E-value=2.9e-13 Score=155.18 Aligned_cols=469 Identities=9% Similarity=0.024 Sum_probs=287.5
Q ss_pred HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC---CCcchHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhhhhc
Q 001945 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQT 152 (992)
Q Consensus 77 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~l~~~l~~-~~~~~~~~al~~l~~l~~~~~~~ 152 (992)
......|+..|. +.++.+|..++.++..++....... .-++.++.+.+.+.+ +++..+..+..+|..+......
T Consensus 16 ~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~- 93 (529)
T 1jdh_A 16 TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG- 93 (529)
T ss_dssp -CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH-
T ss_pred HhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh-
Confidence 344556777777 4789999999999999987532110 124678888888865 4788999999999998754221
Q ss_pred ccccH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001945 153 FRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (992)
Q Consensus 153 ~~~~~--~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l 230 (992)
...+ ...++.+...+++ +++.++..|+.++.+++...+.......-...+|.++ ..+.+++++++..+..+|
T Consensus 94 -~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~----~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 94 -LLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV----ALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp -HHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH----HGGGCCCHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH----HHHhcCCHHHHHHHHHHH
Confidence 1111 2467888899998 8899999999999999887543211111123444444 566677888888888888
Q ss_pred HHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCCh-HHHHHHHhhhhccCCCCC
Q 001945 231 DELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV-IPILQVMCPLLAESNEAG 308 (992)
Q Consensus 231 ~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~ 308 (992)
..++...+..-..... ..++.++.++.+.+ ++..+..+..++..++.. +..... +. ...++.+.+++.+.+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~--~~~~g~~~~L~~ll~~~~--- 240 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-SSNKPA--IVEAGGMQALGLHLTDPS--- 240 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-TTHHHH--HHHTTHHHHHHTTTTSSC---
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC-cccHHH--HHHCCCHHHHHHHHhCCC---
Confidence 8887643322111111 23444444554442 455566667777666532 211100 11 135666777765432
Q ss_pred CCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhh
Q 001945 309 EDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGA 386 (992)
Q Consensus 309 ~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~ 386 (992)
...+..+..++..++...+ ......+++.+.+.+.++++..|..++.+++.++.+.++...... ...++.++..
T Consensus 241 ----~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 241 ----QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp ----HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 2567778888888887654 334456788888888999999999999999999886543332222 2357777777
Q ss_pred cCC--CChhHHHHHHHHHHHhHhhhcHH--HHhh--hhhHHHHHHHhcccCC-hHHHHHHHHHHHHHHHhhccccccch-
Q 001945 387 LRD--PEQFVRGAASFALGQFAEYLQPE--IVSH--YESVLPCILNALEDES-DEVKEKSYYALAAFCEDMGEEILPFL- 458 (992)
Q Consensus 387 l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~--~~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~- 458 (992)
+.+ .++.+|..|+.+|+.++...+.. .... -...+|.+...+.+++ +.++..+++++.++....... ....
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~ 395 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLRE 395 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHH
Confidence 764 45899999999999997653221 1111 2357899999999876 589999999999998543221 1222
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHH----------------------HHHHhhccCcccH--HHHHHHHHHHHhccC
Q 001945 459 DPLMGKLLAALENSPRNLQETCMSAIGS----------------------VAAAAEQAFIPYA--ERVLELLKIFMVLTN 514 (992)
Q Consensus 459 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~----------------------l~~~~~~~~~~~~--~~~~~~l~~~l~~~~ 514 (992)
..+++.|+..+.+.+..+|..+..+++. ++..... ...+ ...++.+..++...+
T Consensus 396 ~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~--~~~l~~~~~v~~l~~ll~~~~ 473 (529)
T 1jdh_A 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPI 473 (529)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHGGGCSC
T ss_pred cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH--HHHHhccCCccHHHHHHcCCc
Confidence 2466777777776666666655544433 2211000 0000 113455556554432
Q ss_pred hhhhHhHHHHHHHHHHHHHhhchhhccCChH--HHHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 515 DEDLRSRARATELLGLVAESVGRARMEPILP--PFVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 515 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
..++..+..+++.++.. + .....+. ..++.+.+.+.+++++++..+..++.++
T Consensus 474 ---~~v~~~a~~~l~~l~~~--~-~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 474 ---ENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ---HHHHHHHHHHHHHHTTS--H-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhcC--H-HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23455566666665521 1 1111111 2334555566678899999999888776
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=1.1e-11 Score=141.80 Aligned_cols=485 Identities=13% Similarity=0.124 Sum_probs=307.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (992)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~~~~~l~~il~~---~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~ 80 (992)
.-++++.+.|+|-+.|+-+.-.+..+.+ +|+.+....+.+.+ ++++.+|.+|...+.+.. .++..+.+.
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~ 148 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFA 148 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHH
Confidence 3466777778888899988888887765 46765555555543 678889999988887763 477788888
Q ss_pred HHHHHHHh-hcCCHhHHHHHHHHHHHHHcccCCCCCCc--chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH
Q 001945 81 QSLIESIT-LEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (992)
Q Consensus 81 ~~ll~~l~-~~~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 157 (992)
..+.+++. .+.++.||+.++.++..+.+.. |+ ..+ ++++.+.+++.++++.++.+|+.++..++...+..+.+.+
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 88888883 2689999999999999999853 42 334 7889999999999999999999999999987776666677
Q ss_pred HHHHHHHHHhcCCC--C----------ChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHH-----HhhcCC-
Q 001945 158 ADMQALLLKCLQDE--T----------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ-----CLASGE- 219 (992)
Q Consensus 158 ~~i~~~l~~~l~~~--~----------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~-----~l~~~~- 219 (992)
+.++..+.+.+..+ + ++-.+...++.+..+.... ++.....+.+.++.+++.+.. .++..+
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 77777776665431 1 5778888888877765432 222222233333444433211 011112
Q ss_pred -HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHh
Q 001945 220 -EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (992)
Q Consensus 220 -~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~ 298 (992)
..+..+|..++..+.. . ...+...+..+...+.++ ++++|..++..+..++...|.. .++......++
T Consensus 306 ~~aVl~ea~~~i~~l~~-~----~~~~~~~~~~L~~~L~~~--~~niry~aL~~l~~l~~~~~~~----~~~~~~~~~i~ 374 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHDS-E----PNLLVRACNQLGQFLQHR--ETNLRYLALESMCTLASSEFSH----EAVKTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHTTCTTTH----HHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-c----HHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhccCcH----HHHHHHHHHHH
Confidence 2555667777666531 1 234444555555555544 7899999999999888655410 01222333444
Q ss_pred hhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHH
Q 001945 299 PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES 378 (992)
Q Consensus 299 ~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~ 378 (992)
..+... +|...+..+.+.+..+ ..+.-+..++..+...+.+.+...|..++.+++.+++..+ +....
T Consensus 375 ~~L~~d------~d~~Ir~~aL~lL~~l---~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~----~~~~~ 441 (621)
T 2vgl_A 375 NALKTE------RDVSVRQRAVDLLYAM---CDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA----VDYTW 441 (621)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC----SSTHH
T ss_pred HHhccC------CCHhHHHHHHHHHHHH---cChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC----CcHHH
Confidence 444411 1225566665555444 3434455666666667777788889999999999887533 23345
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhcccccc
Q 001945 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILP 456 (992)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~ 456 (992)
.+..++..+.+....+...+...+..+....+ ++..+ .+..++..+.++. ..+...++|.++.+.....+.-.-
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~-~~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC-SCHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhCCh-hHHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCC
Confidence 56666666665444566666666666665442 22222 4556677777764 345567779999987765432100
Q ss_pred chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
.-..++..+.+.+...+..+|..++.++..+....++ ..+.+...+..... .++.+..+|.+|......+.
T Consensus 518 ~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~----~~~~i~~~l~~~~~-~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 518 SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE----VKATIQDVLRSDSQ-LKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHSSHHH-HSCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHc
Confidence 0125566676677777899999999999998776543 11222222222222 01345567777887777654
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.58 E-value=3.6e-11 Score=137.42 Aligned_cols=500 Identities=12% Similarity=0.100 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHHHHh--CC--CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcC
Q 001945 16 DNDARRQAEDQIKRLA--KD--PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (992)
Q Consensus 16 d~~~r~~A~~~l~~~~--~~--p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~ 91 (992)
|...|+++-..+--+. -. +......+..+ ++++...|+++...+..... -.++..-.+.+.+.+.|. ++
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~-~s~~~~~Krl~YL~l~~~~~-----~~~e~~~L~iN~l~kDl~-~~ 123 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL-SSNRYTEKQIGYLFISVLVN-----SNSELIRLINNAIKNDLA-SR 123 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGG-GCSCHHHHHHHHHHHHHSCC-----CCHHHHHHHHHHHHHHHH-SC
T ss_pred CHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHh-cCCCHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHHHHhcC-CC
Confidence 5555555555553221 11 23344555544 36788999999888877653 345666666777778888 58
Q ss_pred CHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhh--cCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcC
Q 001945 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS--QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (992)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l--~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 169 (992)
++.+|-.+..+++.+.... -.+.+.+.+.+++ .+.++.+|..|..++..+....++.+.. +.+++.+.++|.
T Consensus 124 n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~ 197 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLN 197 (621)
T ss_dssp CHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhC
Confidence 9999999999999986532 4567888999999 8899999999999999999877765542 356677788888
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-------------CHHHHHHHHHHHHHHhcC
Q 001945 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-------------EEDVAVIAFEIFDELIES 236 (992)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-------------~~~~~~~~~~~l~~l~~~ 236 (992)
+ +++.|+.+|+.++..++...+ ..+..++|.++..+.+.+..+ ++-.+...++.+..+...
T Consensus 198 d-~d~~V~~~a~~~l~~i~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 198 D-QHLGVVTAATSLITTLAQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred C-CCccHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence 8 999999999999998876542 236677888888887765432 455566666666665543
Q ss_pred CccchHHHHHHHHHHHHHHhhCCCC---------ChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCC
Q 001945 237 PAPLLGDSVKSIVHFSLEVSSSHNL---------EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (992)
Q Consensus 237 ~~~~~~~~l~~li~~~~~~~~~~~~---------~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 307 (992)
..+-....+..++..++....+... ...+...+..++..+. + ...+....++.+..++...+.
T Consensus 272 ~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~----~~~~~~~~~~~L~~~L~~~~~- 343 (621)
T 2vgl_A 272 EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---S----EPNLLVRACNQLGQFLQHRET- 343 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---C----CHHHHHHHHHHHHHHSSCSCH-
T ss_pred CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---C----cHHHHHHHHHHHHHHhcCCCc-
Confidence 2222233333333333322221100 0122223333322221 1 111334455556666653332
Q ss_pred CCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhc-CCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh
Q 001945 308 GEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (992)
Q Consensus 308 ~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (992)
+.+..+...+..++...+ ...+......+...+. ++|...|..++..+..++.. .++..++..+..
T Consensus 344 ------niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~ 411 (621)
T 2vgl_A 344 ------NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVAEMLS 411 (621)
T ss_dssp ------HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHHHHHH
Confidence 677778888877775544 2333444455555667 88888999999988888754 356677888888
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l 465 (992)
.+.+.+...|..++.+++.++..+++.. ...+..+++.+......+...++..+..++...+. +.. ..+..+
T Consensus 412 yl~~~d~~~~~~~v~~I~~la~k~~~~~----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~-~~~---~~~~~l 483 (621)
T 2vgl_A 412 YLETADYSIREEIVLKVAILAEKYAVDY----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD-VQG---YAAKTV 483 (621)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS-CHH---HHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh-HHH---HHHHHH
Confidence 8887888899999999999988775433 33455555555544334555566666666654432 222 345566
Q ss_pred HHHhcCCC--HhHHHHHHHHHHHHHHHhhcc--CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhcc
Q 001945 466 LAALENSP--RNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (992)
Q Consensus 466 ~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 541 (992)
...+.++. ..+-..+.+++|..+....+. ..| ..++..+.+.+. .....+|..++.++..+....
T Consensus 484 ~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~---~~~~~v~~~~Lta~~Kl~~~~------ 552 (621)
T 2vgl_A 484 FEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFH---LCSVPTRALLLSTYIKFVNLF------ 552 (621)
T ss_dssp HHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHC------
Confidence 66676653 344455668888777665532 111 123333333332 233455666777776665332
Q ss_pred CChHHHHHHHHh-ccC--CCCchhhHHHHHHHHHH
Q 001945 542 PILPPFVEAAIS-GFG--LEFSELREYTHGFFSNI 573 (992)
Q Consensus 542 ~~~~~i~~~l~~-~l~--~~~~~~r~~~~~~~~~i 573 (992)
|...+.+..+++ ... +.+.++|+.+...+.-+
T Consensus 553 p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 553 PEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp GGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 223333444443 233 67899999998876654
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.1e-13 Score=134.27 Aligned_cols=187 Identities=12% Similarity=0.173 Sum_probs=163.6
Q ss_pred CCCCchHHHHHHHHHHHHHHcc---hhchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh
Q 001945 310 DDDLAPDRAAAEVIDTMALNLA---KHVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (992)
+.+|..|..+...+..+.+..+ ...+..+++.+...+ ++.+..+|.+|+.+++.++.+....+.++...++|.++.
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE 105 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4578999999999999988743 234567888888888 499999999999999999998877888899999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-c-ccccchHHHHH
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-E-EILPFLDPLMG 463 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~-~~~~~~~~l~~ 463 (992)
.+.|+++.||.+|..++..++...+ ++.++|.+...+.+.++.+|..++.++..++...+ . ...+|++.+++
T Consensus 106 ~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 106 KFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 9999999999999999999988753 35688999999999999999999999999888774 3 35689999999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHHHHHhhcc-CcccHHHH
Q 001945 464 KLLAALENSPRNLQETCMSAIGSVAAAAEQA-FIPYAERV 502 (992)
Q Consensus 464 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~ 502 (992)
.+..++.+++..+|..+..+++.++...|+. +.+|++.+
T Consensus 180 ~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 180 SLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999999999999999999999864 66766543
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.9e-13 Score=136.15 Aligned_cols=192 Identities=13% Similarity=0.164 Sum_probs=166.3
Q ss_pred CCCCchHHHHHHHHHH-HHHHcch-----hchHHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCH-HHHH-HhHHHHH
Q 001945 310 DDDLAPDRAAAEVIDT-MALNLAK-----HVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCA-EWMK-EKLESVL 380 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~-l~~~~~~-----~~~~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~-~~~~-~~l~~i~ 380 (992)
+.+|..|+.+...+.. +.+..++ .-+..++..+...+ ++.+..+|.+|+.+++.++++.. ..+. +|...++
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 3468889999988888 7654331 23457788888888 79999999999999999999887 7777 8999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh--hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc---cccc
Q 001945 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH--YESVLPCILNALEDESDEVKEKSYYALAAFCEDMG---EEIL 455 (992)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~---~~~~ 455 (992)
|.++..+.|..+.||.++..++..+++...+. ..+ ++.+++.++..++++++.+|..++.+|..++...+ ..+.
T Consensus 107 p~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 107 TPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 99999999999999999999999999987552 233 78899999999999999999999999999999886 4577
Q ss_pred cch-HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc-cCcccHHHH
Q 001945 456 PFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-AFIPYAERV 502 (992)
Q Consensus 456 ~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~ 502 (992)
+|+ +.+++.+.+++.+++..+|..|.++++.++..+|+ .+.||++.+
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 99999999999999999999999999999999996 487877653
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.31 E-value=4.4e-09 Score=116.25 Aligned_cols=366 Identities=13% Similarity=0.134 Sum_probs=231.7
Q ss_pred CCC-cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 114 GEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 114 ~~~-~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
..| ..-+|.+.+++.++++..+..|...+..++....+.-.... ...++.|..+|.+ ++..++..|+.+|.+++...
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccC
Confidence 456 44689999999999999999999999888753322111111 1357899999998 99999999999999998742
Q ss_pred -CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHH-hh---------
Q 001945 192 -NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEV-SS--------- 257 (992)
Q Consensus 192 -~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~li~~~~~~-~~--------- 257 (992)
.+......-..-+|.++..+.. ..+.+++..+..+|..+...... .....++.++..+... ..
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccc
Confidence 2211111123456777776542 25677888888899998764321 2223334444433211 01
Q ss_pred --CCCCChHHHHHHHHHHHHHHHhhHh---Hhhhc-CChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHc-
Q 001945 258 --SHNLEPNTRHQAIQIISWLAKYKYN---SLKKH-KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL- 330 (992)
Q Consensus 258 --~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~-~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~- 330 (992)
....+++++..+..+|..++...+. .+... ..++.++..+-..+...+. +......+..+|..++...
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~-----~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS-----DSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCC-----SCHHHHHHHHHHHHHHTTHH
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCc-----cHHHHHHHHHHHHHhhcccc
Confidence 0112578999999999988754322 22222 2222333333222212211 1123333444444443221
Q ss_pred --------------------------c-hhch-HHHHHHHHhhh-cCCChhhHHHHHHHHHHHhhcCH---HHHHHhH--
Q 001945 331 --------------------------A-KHVF-PPVFEFASVSC-QNASPKYREAAVTAIGIISEGCA---EWMKEKL-- 376 (992)
Q Consensus 331 --------------------------~-~~~~-~~~~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~---~~~~~~l-- 376 (992)
| +.++ +..++.+...+ .+.++..+++|+.+|..++.+.. ..+...+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 0 1111 34455555566 35678999999999999987531 2222223
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC--------ChHHHHHHHHHHHHHHH
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--------SDEVKEKSYYALAAFCE 448 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~--------~~~v~~~a~~~l~~l~~ 448 (992)
...+|.++..|.+++..|+..|+++|+.++...... ...-...+|.|+..|.+. +..++..||.+|.+++.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999999999864321 112357899999999865 35788899999999986
Q ss_pred hhccccccch-HHHHHHHHHHhcCC--CHhHHHHHHHHHHHHHH
Q 001945 449 DMGEEILPFL-DPLMGKLLAALENS--PRNLQETCMSAIGSVAA 489 (992)
Q Consensus 449 ~~~~~~~~~~-~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~ 489 (992)
..+....... ...++.|..++.+. ...+++.|..++..+..
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 5433222222 26788888888875 78889999988888764
No 57
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.28 E-value=1.4e-09 Score=120.23 Aligned_cols=352 Identities=10% Similarity=0.084 Sum_probs=223.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccccc-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHH
Q 001945 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (992)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (992)
+|.+..+++++++..+..|...+..++...++.-... -...++.+..+|.+ +++.++..|+.+|.++....++.....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6788888888888999999999999874332210011 12357889999998 899999999999999987522211111
Q ss_pred HHHhhHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhh--------CCC------CCh
Q 001945 199 KFREFIPSILNVSRQCLA-SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS--------SHN------LEP 263 (992)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~--------~~~------~~~ 263 (992)
.-...+|.++..+ . +++++++..+.++|..++.. +..-...+...++.++.++. ++. .+.
T Consensus 83 ~~~G~i~~Lv~lL----~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 83 RRQNGIREAVSLL----RRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHTTCHHHHHHHH----TTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHcCCHHHHHHHH----hhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 1234567777654 4 56789999999999999876 32222233355555555551 110 245
Q ss_pred HHHHHHHHHHHHHHHhhHhH---hhhcCChHHHHHHHhhhhcc----CCCCCCCCCCchHHHHHHHHHHHHHH-------
Q 001945 264 NTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAE----SNEAGEDDDLAPDRAAAEVIDTMALN------- 329 (992)
Q Consensus 264 ~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~----~~~~~~d~~~~~~~~a~~~l~~l~~~------- 329 (992)
++...+...|..++.. +.. +.+. +..++.+..++.. .+.+ ......+...+..++..
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~-----~~~~e~a~~~L~nLs~~~~~~~~~ 228 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAGRQTMRNY---SGLIDSLMAYVQNCVAASRCD-----DKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHTTS---TTHHHHHHHHHHHHHHHTCTT-----CTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHc---CCCHHHHHHHHHhhccccCCc-----hHHHHHHHHHHHhcccchhccCcc
Confidence 6677888888888865 332 1221 1344445544442 1111 01222222222222100
Q ss_pred ---------------------c------------------------c-hhch-HHHHHHHHhhhc-CCChhhHHHHHHHH
Q 001945 330 ---------------------L------------------------A-KHVF-PPVFEFASVSCQ-NASPKYREAAVTAI 361 (992)
Q Consensus 330 ---------------------~------------------------~-~~~~-~~~~~~l~~~l~-~~~~~~r~~al~~l 361 (992)
+ + +.++ +..++.+...+. +.+...+++|+++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL 308 (457)
T 1xm9_A 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 0 0 0111 234444444443 45688999999999
Q ss_pred HHHhhcCHH---HH-HHhH--HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcccCC--
Q 001945 362 GIISEGCAE---WM-KEKL--ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDES-- 432 (992)
Q Consensus 362 ~~i~~~~~~---~~-~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~~~~-- 432 (992)
+.++.+... .+ ...+ ...+|.++..+.+++..||..|+++|+.++..- ..... -...+|.+++.|...+
T Consensus 309 ~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred HHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCC
Confidence 999875422 22 2223 356899999999999999999999999998753 22222 2568999999998763
Q ss_pred ----hHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHHhcCC-CHhHHHHHHHHHHHHH
Q 001945 433 ----DEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENS-PRNLQETCMSAIGSVA 488 (992)
Q Consensus 433 ----~~v~~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~-~~~v~~~a~~~l~~l~ 488 (992)
..+...++.++.+++...+..... .-...++.|..++.+. +.+++..|...+..+.
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 357888999999988654332111 1236788888888888 8899999998887553
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.27 E-value=6e-10 Score=113.21 Aligned_cols=241 Identities=16% Similarity=0.133 Sum_probs=170.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCC
Q 001945 211 SRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKL 289 (992)
Q Consensus 211 l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 289 (992)
+.+.+.+++++++..++.+|..++...+......+. ..++.++..+.++ ++++|..++..+..++...+.....
T Consensus 7 L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~--- 81 (252)
T 4hxt_A 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKA--- 81 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHH---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHH---
Confidence 344566778899999999999998776533333322 3566666666655 5788888888877776432211000
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH
Q 001945 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (992)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 369 (992)
+ . -...++.+...++++++..|..++.+++.++...+
T Consensus 82 ---~---------------------------------~-------~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 82 ---I---------------------------------V-------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp ---H---------------------------------H-------HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred ---H---------------------------------H-------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 0 0 01134445556778889999999999999997655
Q ss_pred HHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcccCChHHHHHHHHHHHHHH
Q 001945 370 EWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFC 447 (992)
Q Consensus 370 ~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~ 447 (992)
+...... ...++.++..+.++++.+|..|+++|+.++...+...... -..+++.++..+.++++.++..++++|.+++
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4333222 3578999999999999999999999999988643322222 2578999999999999999999999999998
Q ss_pred Hhhccccccc-hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH
Q 001945 448 EDMGEEILPF-LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA 499 (992)
Q Consensus 448 ~~~~~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 499 (992)
...+...... -..+++.|..++.+++..++..++.+++.+....+....+|+
T Consensus 199 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 251 (252)
T 4hxt_A 199 SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHHH 251 (252)
T ss_dssp TSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC----
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccccccC
Confidence 6433222222 135788999999999999999999999999987766655543
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.26 E-value=1.3e-10 Score=118.07 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=174.3
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (992)
++.+.+.+.++++..|..|+.+++.++...++...... ..+++.++..+.++++.+|..|+++|+.++...........
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45666778888999999999999999987764433333 25899999999999999999999999999876422222222
Q ss_pred -hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 418 -ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 418 -~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
...++.++..+.++++.++..++++|.+++...+...... -...++.++.++.+++..++..++.+++.++...++..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4689999999999999999999999999985433221111 12578889999999999999999999999976433221
Q ss_pred cccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCCh-HHHHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 496 IPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL-PPFVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 496 ~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
.... ...++.+.+++... +..++..++.+++.++.. .++...... ...++.+.+.+++++++++..+..+++++
T Consensus 164 ~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 1111 23677777777643 335677788888888742 121111111 23667777778888899999999999999
Q ss_pred HHHcccCccCc
Q 001945 574 AGVLEDGFAQY 584 (992)
Q Consensus 574 ~~~~~~~~~~~ 584 (992)
+...+....+|
T Consensus 240 ~~~~~~~~~~~ 250 (252)
T 4hxt_A 240 KSGGWLEHHHH 250 (252)
T ss_dssp HHTCBCCC---
T ss_pred HcCCCcccccc
Confidence 98776555443
No 60
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.8e-07 Score=104.87 Aligned_cols=466 Identities=10% Similarity=0.077 Sum_probs=278.0
Q ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhc--CCCHHHHHHHHHHHHHhhhhhhhcccccHH
Q 001945 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFA 158 (992)
Q Consensus 81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 158 (992)
..+-..+....+..+...+.-.+..+.++.+ .|++ +.++.+.+. ...+++|..++.++..+.+..++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~---~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 210 (778)
T 3opb_A 135 NELQIRIHYGEDTHVTYLLSIILQLLNKFKY---NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVV 210 (778)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCC---CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHHcCc---cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3343334434556777777777777777665 6888 677766554 456789999999999999988877776666
Q ss_pred HHHH-HHHHhcCC-CCChHHHHHHHHHHHHhhcccCChhhHHHH--HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001945 159 DMQA-LLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (992)
Q Consensus 159 ~i~~-~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (992)
+++. ++...=.+ +.++ ...++.++..+....++. ....| ..+.+.+.+.+. ...+......+++.+...+
T Consensus 211 ~~~~~l~~e~~~~~~~~~--~~~~~~~l~~lfPi~p~~-~s~lfl~e~~~~~l~~~~~---~~~~~~~~~a~L~lLsaAC 284 (778)
T 3opb_A 211 DFMSSLIVEAEIDVGNDP--LSIIVKTLSELYPSLTTL-CSEIFLTKGLSKLFKKRVF---EEQDLQFTKELLRLLSSAC 284 (778)
T ss_dssp HHHHHHHHHHHHTCSSCH--HHHHHHHHHHHTTTTHHH-HHHHHSTTTHHHHHHHHHH---SSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccCCCCcc--HHHHHHHHHHHhcCCHHH-HHHHHccccHHHHHHHHHh---cccchHHHHHHHHHHHHHh
Confidence 6666 33232222 1222 233445555554443211 00011 122333333221 2344556667777777665
Q ss_pred cCCccchHHH-HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCC
Q 001945 235 ESPAPLLGDS-VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDL 313 (992)
Q Consensus 235 ~~~~~~~~~~-l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~ 313 (992)
....- +.+ ....++.+.+.++ .+.+|..|...|..+...... ...-+..+.+.+..++.+.+.
T Consensus 285 i~~~c--R~~I~~~~~~~L~~~l~----~~~ir~lAavvL~KL~~~~~~---~~~si~~La~~~~~~L~~~~~------- 348 (778)
T 3opb_A 285 IDETM--RTYITENYLQLLERSLN----VEDVQIYSALVLVKTWSFTKL---TCINLKQLSEIFINAISRRIV------- 348 (778)
T ss_dssp CSHHH--HHHHHHHHHHHHHHHTT----SGGGHHHHHHHHHHHTGGGTC---TTCCHHHHHHHHHHHTTTCCH-------
T ss_pred CCcHH--HHHHHHhHHHHHHHHhc----cHHHHHHHHHHHHHHhcCCCC---CcCcHHHHHHHHHHHHhcCCc-------
Confidence 44221 222 2334455555553 246787777666655432211 112345677777777776432
Q ss_pred chHHHHHHHHHHHHHHcc-hhch---HHHHHHHHhhhcC-CChhhHHHHHHHHHHHhhcCHH------------------
Q 001945 314 APDRAAAEVIDTMALNLA-KHVF---PPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAE------------------ 370 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~-~~~~---~~~~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~------------------ 370 (992)
..+..|.+.|..++..-. +..+ +.+++.+.+.+++ .+....++++..+..+....+.
T Consensus 349 ~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~ 428 (778)
T 3opb_A 349 PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX 428 (778)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc
Confidence 227778888887764322 1111 3445555566664 5556777788777777652110
Q ss_pred ---------------HHHH----hH--HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhc
Q 001945 371 ---------------WMKE----KL--ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (992)
Q Consensus 371 ---------------~~~~----~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l 428 (992)
.+.. .+ ..++|.+...+.++++.+|..|+++|..++..-. ...... .+.++.|+..+
T Consensus 429 ~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~-~R~~lvqqGal~~LL~lL 507 (778)
T 3opb_A 429 XPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN-FIPQLAQQGAVKIILEYL 507 (778)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG-GHHHHHHTTHHHHHHHHT
T ss_pred CcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHH
Confidence 0001 00 1368888889999999999999999999987632 222222 57889999998
Q ss_pred ccCChH---HHHHHHHHHHHHHHhhcccc--ccc-hHHHHHHHHHHhcC-CCH-------------hHHHHHHHHHHHHH
Q 001945 429 EDESDE---VKEKSYYALAAFCEDMGEEI--LPF-LDPLMGKLLAALEN-SPR-------------NLQETCMSAIGSVA 488 (992)
Q Consensus 429 ~~~~~~---v~~~a~~~l~~l~~~~~~~~--~~~-~~~l~~~l~~~l~~-~~~-------------~v~~~a~~~l~~l~ 488 (992)
.+.... +|..|+.+|.++.-...+.. ..| ....++.|+.++.. +.. .-+-.|+.++++++
T Consensus 508 ~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLA 587 (778)
T 3opb_A 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA 587 (778)
T ss_dssp TCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHh
Confidence 876543 89999999999986553221 111 12678888888872 211 12668999999998
Q ss_pred HHhh---ccCc-ccHH--HHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch--hhccC-ChHH---HHHHHHhccC
Q 001945 489 AAAE---QAFI-PYAE--RVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR--ARMEP-ILPP---FVEAAISGFG 556 (992)
Q Consensus 489 ~~~~---~~~~-~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~-~~~~---i~~~l~~~l~ 556 (992)
.... +... .... ..+|.|.+++... ...+|..|.++++.++..-.. ..|.. ..+. =++.++..++
T Consensus 588 s~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~ 664 (778)
T 3opb_A 588 SSETSDGEEVCKHIVSTKVYWSTIENLMLDE---NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ 664 (778)
T ss_dssp HCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred cCCcccchHHHHHHHHhcCHHHHHHHHHhCC---CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc
Confidence 7542 2222 2233 3678888877643 235677899999999853321 12322 1122 2667777777
Q ss_pred CCCchhhHHHHHHHHHHHHH
Q 001945 557 LEFSELREYTHGFFSNIAGV 576 (992)
Q Consensus 557 ~~~~~~r~~~~~~~~~i~~~ 576 (992)
.++.++|.++..+++.+...
T Consensus 665 s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 665 LSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 88899999999998888654
No 61
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.22 E-value=5e-07 Score=111.82 Aligned_cols=255 Identities=11% Similarity=0.044 Sum_probs=147.4
Q ss_pred ChhHHHHHHHHHHHhHhhhcHH--------HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc----cccccch
Q 001945 391 EQFVRGAASFALGQFAEYLQPE--------IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG----EEILPFL 458 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~----~~~~~~~ 458 (992)
+..++...+..+..++..+..- ....+..+++.++..+.+++..+...++..+..+++... ..+.+++
T Consensus 315 d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l 394 (1204)
T 3a6p_A 315 HYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAII 394 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 4556666666666655433211 123567889999999998888888888888887876532 2345677
Q ss_pred HHHHHHHHHHhcC---CC------------------------HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHh
Q 001945 459 DPLMGKLLAALEN---SP------------------------RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (992)
Q Consensus 459 ~~l~~~l~~~l~~---~~------------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 511 (992)
..+++.+...+.. +. ...|......+..++...+.... +.+.+.+.+.+.
T Consensus 395 ~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l---~~v~~~l~~~l~ 471 (1204)
T 3a6p_A 395 PKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSF---QMAGEWLKYQLS 471 (1204)
T ss_dssp HHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHh
Confidence 7777776332211 10 12344555555555554443322 223344433332
Q ss_pred cc----------------------ChhhhHhHHHHHHHHHHHHHhhchhhccCC-----hHHHHHHHHhccCCCCchhhH
Q 001945 512 LT----------------------NDEDLRSRARATELLGLVAESVGRARMEPI-----LPPFVEAAISGFGLEFSELRE 564 (992)
Q Consensus 512 ~~----------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~i~~~l~~~l~~~~~~~r~ 564 (992)
.. .++.+...+..+..+..++..+..-.-.++ .+.+++.++. ++.+++.+|.
T Consensus 472 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~ 550 (1204)
T 3a6p_A 472 TFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILS 550 (1204)
T ss_dssp CC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHH
T ss_pred hhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHH
Confidence 21 012222233333444444433311000122 4456666544 2334788999
Q ss_pred HHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhh
Q 001945 565 YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (992)
Q Consensus 565 ~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (992)
..+.+|+++...+. .-..|++.++..++..+....... .... + ....-+.
T Consensus 551 ~~i~~l~~l~~~~~-~~p~~L~~vL~~ll~~l~~~~~~~--~~~~-----------------------~----~~~~k~v 600 (1204)
T 3a6p_A 551 CVLTNVSALFPFVT-YRPEFLPQVFSKLFSSVTFETVEE--SKAP-----------------------R----TRAVRNV 600 (1204)
T ss_dssp HHHHHHHHHGGGGG-TCGGGHHHHHHHHHHHHHCCTTCS--TTSC-----------------------C----CHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHhhccCCccc--cccc-----------------------c----cHHHHHH
Confidence 99999998887665 335688899998887765311100 0000 0 0022357
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHhccc
Q 001945 645 KAAATQALGLFALHTKSSYAPFLEESLKILVRHAS 679 (992)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 679 (992)
+..|+.++..++..++..+.||++++...+..++.
T Consensus 601 r~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 601 RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999998877665
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.2e-07 Score=104.31 Aligned_cols=517 Identities=12% Similarity=0.064 Sum_probs=298.3
Q ss_pred CcchHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCCh
Q 001945 116 WPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (992)
Q Consensus 116 ~~~ll~~l~~~l~-~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 194 (992)
-..++..|...++ +.++ ....-+.+...+...+.-.+.+ +.-++..+- +.. ..++||..++-++.++....+.
T Consensus 130 ~~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~--~~~-~~~~~~~~~l~i~~~~~~~~~~- 203 (778)
T 3opb_A 130 TIALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELI--LRI-SEDEVKSMMLIIFAELQSSFQK- 203 (778)
T ss_dssp GHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHH--TTT-TCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhc--ccc-ChhhhHHHHHHHHHHHHHhCch-
Confidence 3445666655555 3333 4556667777777766644433 222332221 234 7789999999988888776532
Q ss_pred hhHHHHHhhHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH--HHHHHHHHHhhCCCCChHHHHHHHH
Q 001945 195 AEVVKFREFIPSILNVSR-QCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVSSSHNLEPNTRHQAIQ 271 (992)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~-~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~li~~~~~~~~~~~~~~~~r~~a~~ 271 (992)
.+...+-.++..+. +.=.+...+....++..+..+....|......+. .+.+.+....... .+..+...+++
T Consensus 204 ----~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~-~~~~~~~a~L~ 278 (778)
T 3opb_A 204 ----DFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEE-QDLQFTKELLR 278 (778)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSS-CCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcc-cchHHHHHHHH
Confidence 23444444444221 1111212344566677777776665543333221 1233333333322 35667777888
Q ss_pred HHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCC
Q 001945 272 IISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNA 349 (992)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~ 349 (992)
.+...+.... ++.. .....++.+...+.. ...+..|.-+|..+....+ ..-+..+.+.+..++.++
T Consensus 279 lLsaACi~~~--cR~~-I~~~~~~~L~~~l~~---------~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~ 346 (778)
T 3opb_A 279 LLSSACIDET--MRTY-ITENYLQLLERSLNV---------EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRR 346 (778)
T ss_dssp HHHHHCCSHH--HHHH-HHHHHHHHHHHHTTS---------GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCcH--HHHH-HHHhHHHHHHHHhcc---------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcC
Confidence 8877664322 2221 112223333333321 1466667777766654333 334456778888888887
Q ss_pred ChhhHHHHHHHHHHHhhcCH--HHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcH---------------
Q 001945 350 SPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP--------------- 411 (992)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--------------- 411 (992)
+-..|.-|+..|+++.-... +.+... ...++.++..+++ .+..+.+.+...+..++...+.
T Consensus 347 ~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A 425 (778)
T 3opb_A 347 IVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX 425 (778)
T ss_dssp CHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---------
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc
Confidence 77779999999999986542 333222 4557777777774 5667888888888888764321
Q ss_pred ------------------HH----Hhh--hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Q 001945 412 ------------------EI----VSH--YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLA 467 (992)
Q Consensus 412 ------------------~~----~~~--~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 467 (992)
++ ... -.+++|.|...+..+++.+|..++++|.++...-...-.-.-...++.|+.
T Consensus 426 ~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~ 505 (778)
T 3opb_A 426 XXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILE 505 (778)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHH
T ss_pred cccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 00 011 145889999999999999999999999999755322111122356777888
Q ss_pred HhcCCCHh---HHHHHHHHHHHHHHHhh-c-cCcccH-HHHHHHHHHHHhc-cChhh--------h--HhHHHHHHHHHH
Q 001945 468 ALENSPRN---LQETCMSAIGSVAAAAE-Q-AFIPYA-ERVLELLKIFMVL-TNDED--------L--RSRARATELLGL 530 (992)
Q Consensus 468 ~l~~~~~~---v~~~a~~~l~~l~~~~~-~-~~~~~~-~~~~~~l~~~l~~-~~~~~--------~--~~~~~~~~~l~~ 530 (992)
++.+.... .|..|..+++++..... . .|..|- ...+|.|.+++.. ..... . ..+..|+.+++.
T Consensus 506 lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp HTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 88776443 89999999999985432 1 222211 1466777777762 11100 0 124468888888
Q ss_pred HHHhhch--hhccC-ChH--HHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCc-cCch----hh---hhHHHHhhcc
Q 001945 531 VAESVGR--ARMEP-ILP--PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGF-AQYL----PL---VVPLAFSSCN 597 (992)
Q Consensus 531 l~~~~~~--~~~~~-~~~--~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~-~~~l----~~---i~~~l~~~~~ 597 (992)
++..-++ +.... .+. ..++.+.+.+.+++..+|.++..++.+++.... .+ ..+. +. -++.|+..++
T Consensus 586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~ 664 (778)
T 3opb_A 586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQ 664 (778)
T ss_dssp HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHc
Confidence 8854311 11111 122 356666666667788999999999999996432 22 1222 22 1566766654
Q ss_pred CCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchH--HHHHHHHH
Q 001945 598 LDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFL--EESLKILV 675 (992)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~--~~~~~~l~ 675 (992)
.+ ..+.|.+|.++|+.+....+......+ +..++.++
T Consensus 665 s~-----------------------------------------D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 665 LS-----------------------------------------DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp CS-----------------------------------------CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred CC-----------------------------------------CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 21 124688899999887644322111111 23344445
Q ss_pred hcccC--CChhHHHHHHHHHHHHHH
Q 001945 676 RHASY--FHEDVRYQAVFALKNILT 698 (992)
Q Consensus 676 ~~~~~--~~~~vr~~a~~~l~~l~~ 698 (992)
.++.. .++++|..++.++..+..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55544 688999999988887764
No 63
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.19 E-value=2.4e-09 Score=115.72 Aligned_cols=363 Identities=11% Similarity=0.080 Sum_probs=209.0
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCC-----------CChHHHHHHHHHHHH
Q 001945 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-----------TSNRVRIAALKAIGS 186 (992)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-----------~~~~vr~~a~~~l~~ 186 (992)
+.++.+.+.+.+.+... .+..|..+....+--..-.-...+|.|.++|... .++++|..|.++|.+
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp -------------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 34555666665555431 3333333333222000001123567777777752 237999999999999
Q ss_pred hhcccCChhhHHHHHhhH---HHH---HHHHHHHhhcCC--HH-----H-------HHHHHHHHHHHhcCCccchHHHHH
Q 001945 187 FLEFTNDGAEVVKFREFI---PSI---LNVSRQCLASGE--ED-----V-------AVIAFEIFDELIESPAPLLGDSVK 246 (992)
Q Consensus 187 l~~~~~~~~~~~~~~~~~---~~l---l~~l~~~l~~~~--~~-----~-------~~~~~~~l~~l~~~~~~~~~~~l~ 246 (992)
++...++..........+ +.+ ...+.+++.... .+ + ...|.++|..+... +. .+..+-
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e-~R~~i~ 186 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE-HRHAMN 186 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH-HHHHHH
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH-HHHHHH
Confidence 998876543332211111 221 222233343321 11 2 23788888888654 22 122221
Q ss_pred --HHHHHHHHHhh---------CCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCch
Q 001945 247 --SIVHFSLEVSS---------SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (992)
Q Consensus 247 --~li~~~~~~~~---------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~ 315 (992)
..++.++.++. .+.....++..|...|..++...+..-..-.-....++.++.+|...++ ..
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-------~v 259 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-------DL 259 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-------HH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-------HH
Confidence 13333333331 1111356788888899888865432110000023567888888875433 57
Q ss_pred HHHHHHHHHHHHHHcc---hh-ch-HHHHHHHHhh-hcCCChhhHHHHHHHHHHHhhcCHHHHHHhH--HHHHHHHHhhc
Q 001945 316 DRAAAEVIDTMALNLA---KH-VF-PPVFEFASVS-CQNASPKYREAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGAL 387 (992)
Q Consensus 316 ~~~a~~~l~~l~~~~~---~~-~~-~~~~~~l~~~-l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l--~~i~~~l~~~l 387 (992)
+..+..+|..++..-. +. +. .-.++.+.+. +.+.+...+..|+.++..++..+.+.-.... ...+|.+...+
T Consensus 260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 7788888888765311 11 11 1245555554 4667888999999999999885543222221 35788888888
Q ss_pred CCCCh----hHHHHHHHHHHHhHhh--hcHHHHhh-h-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch-
Q 001945 388 RDPEQ----FVRGAASFALGQFAEY--LQPEIVSH-Y-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL- 458 (992)
Q Consensus 388 ~d~~~----~vr~~a~~~l~~l~~~--~~~~~~~~-~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~- 458 (992)
.+++. .++..|+++|..++.. ..++.... . ...+|.++..|.+.+..++..|+++|.++....++......
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86554 4899999999999863 12322222 2 46899999999999999999999999999843332222222
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 459 ~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
...++.|..++.+.+..+++.|..++..++...+
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 3568889999999999999999999999986543
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.17 E-value=4.9e-09 Score=108.07 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=172.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (992)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 240 (992)
++.+...|.+ +++.+|..|+.+|+.+.. +..+..+...+.++++.++..++.+|..+.....
T Consensus 25 i~~L~~~L~~-~~~~vr~~A~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-- 86 (280)
T 1oyz_A 25 DDELFRLLDD-HNSLKRISSARVLQLRGG---------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-- 86 (280)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHCC---------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHccCC---------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--
Confidence 4567788888 899999999999987641 2233344456678889999999999988754221
Q ss_pred hHHHHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHH
Q 001945 241 LGDSVKSIVHFSLE-VSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (992)
Q Consensus 241 ~~~~l~~li~~~~~-~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a 319 (992)
.++.+++.+.. ...++ ++.+|..++..+..+....+. +.+.+++.+...+.+.+ +.+|..+
T Consensus 87 ---~~~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~~-------~~vR~~a 148 (280)
T 1oyz_A 87 ---CEDNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDKS-------TNVRRAT 148 (280)
T ss_dssp ---THHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCSC-------HHHHHHH
T ss_pred ---cchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCCC-------HHHHHHH
Confidence 23334444432 22333 789999999999887643221 23346666766665432 3678888
Q ss_pred HHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHH
Q 001945 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (992)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (992)
..++..+.. .. .++.+...++++++.+|..++.+++.+.... +.+++.+...+.|+++.||..|+
T Consensus 149 ~~aL~~~~~---~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 149 AFAISVIND---KA----TIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp HHHHHTC------C----CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhcCC---HH----HHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHH
Confidence 887765442 22 3455556688999999999999999985332 25678888889999999999999
Q ss_pred HHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC-CCHhHHH
Q 001945 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQE 478 (992)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~v~~ 478 (992)
++|+.+.. +..++.++..+.+++ ||..+..+|+.+-. +..++.|...+.+ .+..+..
T Consensus 214 ~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 214 IGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHH
T ss_pred HHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHH
Confidence 99998862 247788888888764 88889888887632 1345566666654 4566666
Q ss_pred HHHHHH
Q 001945 479 TCMSAI 484 (992)
Q Consensus 479 ~a~~~l 484 (992)
.+++.+
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 65
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=2.3e-09 Score=110.53 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=152.8
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
++.+...+.++++.+|..|+.+|+.+.. +..++.+...+.|+++.||..|+++|+.+...- ....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~ 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCED 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccch
Confidence 3444556789999999999999999873 256788888999999999999999999886431 1223
Q ss_pred hHHHHHHH-hcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcc
Q 001945 419 SVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (992)
Q Consensus 419 ~ll~~l~~-~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 497 (992)
.+++.+.. .+.++++.||..++.+|+.+....+ .+.+.+++.+...+.++++.+|..++.+++.+...
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------- 158 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------- 158 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-------
Confidence 45566653 5678899999999999999875432 34567788899999999999999999999876531
Q ss_pred cHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHc
Q 001945 498 YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVL 577 (992)
Q Consensus 498 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~ 577 (992)
..++.|...+.. ++..+|..+..+++.++ ..-+..++.+...++++++.+|..+..+++.+.
T Consensus 159 ---~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~---------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 159 ---ATIPLLINLLKD---PNGDVRNWAAFAININK---------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp ---CCHHHHHHHHTC---SSHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---
T ss_pred ---HHHHHHHHHHcC---CCHHHHHHHHHHHHhhc---------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---
Confidence 245566666643 34456777777776652 112456677777888889999999999998764
Q ss_pred ccCccCchhhhhHHHHhhcc
Q 001945 578 EDGFAQYLPLVVPLAFSSCN 597 (992)
Q Consensus 578 ~~~~~~~l~~i~~~l~~~~~ 597 (992)
-+..++.++..++
T Consensus 221 -------~~~~~~~L~~~l~ 233 (280)
T 1oyz_A 221 -------DKRVLSVLCDELK 233 (280)
T ss_dssp -------CGGGHHHHHHHHT
T ss_pred -------CHhhHHHHHHHhc
Confidence 2456677776653
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.14 E-value=3.9e-10 Score=114.48 Aligned_cols=233 Identities=13% Similarity=0.159 Sum_probs=165.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (992)
++.+...+++++...|..|+.++..+.....+...... ...++.++..+.++++.+|..|+++|+.++...........
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44555668889999999999999776654222222222 35789999999999999999999999999975433222222
Q ss_pred -hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 418 -ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 418 -~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
...+|.++..+.++++.++..|+++|.++....+..... .-...++.|+.++.+++..++..++.+++.++...++..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 468999999999999999999999999997654432122 223578899999999999999999999999986432221
Q ss_pred cccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChH-HHHHHHHhccCCCCchhhHHHHHHHHHH
Q 001945 496 IPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP-PFVEAAISGFGLEFSELREYTHGFFSNI 573 (992)
Q Consensus 496 ~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~r~~~~~~~~~i 573 (992)
.... ..+++.+.+++... +..++..++.+++.++.. .++....... ..++.+.+.+.++++++|..+..+++++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1111 23566677777543 345667788888888732 1222111122 3677788888888899999999999877
Q ss_pred HH
Q 001945 574 AG 575 (992)
Q Consensus 574 ~~ 575 (992)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.14 E-value=9e-10 Score=111.76 Aligned_cols=218 Identities=15% Similarity=0.192 Sum_probs=159.5
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHhhhcCCh-HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc---hhch-H
Q 001945 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLV-IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF-P 336 (992)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~---~~~~-~ 336 (992)
+++++..++..+..+....+..... +. ...++.++.++...+. ..+..+..++..++...+ ..+. .
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~--~~~~g~i~~L~~lL~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQA--VIDAGALPALVQLLSSPNE-------QILQEALWALSNIASGGNEQIQAVIDA 95 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHH--HHHTTHHHHHHHGGGCSCH-------HHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHH--HHHcCcHHHHHHHHcCCCH-------HHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 6778889988886655432221111 11 2366777777765432 678888888888875332 1222 2
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
..++.+...++++++..|..|+.+|+.++.+......... ...++.++..+.++++.+|..|+++|+.++...+.....
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3677778888999999999999999999987654422222 358899999999999999999999999999765332222
Q ss_pred hh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 001945 416 HY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 416 ~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
.. ..++|.++..+.++++.++..++++|.+++...+.......+ ..++.+..++.+.+..+|..|..+++.++
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22 578999999999999999999999999998543332222222 47888999999999999999999998765
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=8.2e-09 Score=119.98 Aligned_cols=292 Identities=13% Similarity=0.164 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhh
Q 001945 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300 (992)
Q Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~ 300 (992)
..+..+...+..++.......... ..++..+...+.++ ... ..|+..+..+++..+..-.-.+|+-++++.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k--~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDK--KTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSH--HHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhcc--CCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 334455555666554321111111 14555555555443 122 7788888888754432111112444456666666
Q ss_pred hccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHhhcCHHHHHHhHHHH
Q 001945 301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (992)
Q Consensus 301 l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i 379 (992)
..+-.. .++.+|..+.+.+...++......++|.+...+.+. .|+.+.+|+..++.+++..++.+...++++
T Consensus 104 ~~dk~~-------~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 104 AGNKDK-------EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176 (986)
T ss_dssp TTCSSH-------HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hcCCch-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence 654433 689999999999999999666688888888777654 799999999999999999899999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh-ccc-cccc
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEE-ILPF 457 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~-~~~-~~~~ 457 (992)
+|.+..++.|..+.|..+|..++..+|..+++ ..+...+|.+++++.+|+. |- .++..+.... -.. -.|-
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n---~d~~~~~~~~~~~~~~p~~-~~----~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDN---KDIERFIPSLIQCIADPTE-VP----ETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC---TTTGGGHHHHHHHHHCTTH-HH----HHHHHHTTCCCCSCCCHHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCC---cchhhhHHHHHHHhcChhh-hH----HHHHHhhcCeeEeeecchh
Confidence 99999999999999999999999999998763 3556788999999999853 32 2333332211 112 2367
Q ss_pred hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh--ccCcccHHHHHHHHHHHHhccChhhhH-hHHHHHHHHHHHH
Q 001945 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDLR-SRARATELLGLVA 532 (992)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~l~~l~ 532 (992)
+.-+++.|.+.|......++..+.-.+.+++.-+. ....||++.++|.+.+.....++++.+ +..+|+.++....
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 77888888899998888999999999999998765 467899999999999999887777654 2335566655544
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.12 E-value=8e-08 Score=106.27 Aligned_cols=354 Identities=8% Similarity=0.013 Sum_probs=233.0
Q ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC---CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-hhhcccccH
Q 001945 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPFLFQFSQSEQEEHREVALILFSSLTET-IGQTFRPHF 157 (992)
Q Consensus 82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~ 157 (992)
.+++.|.+ .+..++..++.++..++....+.. .-..-+|.|.+++.+++..++..|..+|..++.. ..+. ...+
T Consensus 52 ~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-k~~I 129 (584)
T 3l6x_A 52 EVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-KIAI 129 (584)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-HHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-HHHH
Confidence 46667774 788899999999998886321100 0134689999999999999999999999999853 1111 1111
Q ss_pred --HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHH--------------hhcCCHH
Q 001945 158 --ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC--------------LASGEED 221 (992)
Q Consensus 158 --~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~--------------l~~~~~~ 221 (992)
...++.+...|.++.+..++..|..+|.++....... ......-+|.++..+..- ....+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k--~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK--MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH--HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 1357778888876467889999999999998743221 222245577777755211 0123568
Q ss_pred HHHHHHHHHHHHhcCCccchH------HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHh-----------
Q 001945 222 VAVIAFEIFDELIESPAPLLG------DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL----------- 284 (992)
Q Consensus 222 ~~~~~~~~l~~l~~~~~~~~~------~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~----------- 284 (992)
++..+..+|..++...+..-. ..++.++.++-......+.+......|+..|..++-......
T Consensus 208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 889999999999875432111 123344444433322334466777888888777653211110
Q ss_pred --------hhcC-----ChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc------hhch--HHHHHHHH
Q 001945 285 --------KKHK-----LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA------KHVF--PPVFEFAS 343 (992)
Q Consensus 285 --------~~~~-----~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~------~~~~--~~~~~~l~ 343 (992)
...+ +-...++.++.+|..... ......|..+|..++..-. ...+ ...++.+.
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~------~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKT------PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCC------HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 0000 113456667777754322 2566778888877764321 1111 35578888
Q ss_pred hhhcCCChhhHHHHHHHHHHHhhcCH--HHHHHhHHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHhHhhhcHHH
Q 001945 344 VSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDP--------EQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
.++.+++...+..|+.+|+.++.+.. ..+ -...+|.++..|.+. +..++..|+++|+.++..-....
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 89999999999999999999998642 333 246789999988865 46788999999999976543333
Q ss_pred Hhhh-hhHHHHHHHhcccC--ChHHHHHHHHHHHHHHH
Q 001945 414 VSHY-ESVLPCILNALEDE--SDEVKEKSYYALAAFCE 448 (992)
Q Consensus 414 ~~~~-~~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~ 448 (992)
.... ...+|.|+..+.+. .+.++..|+++|.+++.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 3322 57899999999875 78999999999999874
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.07 E-value=4.9e-08 Score=107.74 Aligned_cols=352 Identities=9% Similarity=0.036 Sum_probs=223.5
Q ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCC-----cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 001945 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH 156 (992)
Q Consensus 82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 156 (992)
.+++.|.+ .++.++..++.++..++....+ .+ ...+|.+.++++++++..+..|..+|..+....++. ...
T Consensus 6 ~lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-k~~ 81 (457)
T 1xm9_A 6 KAVQYLSS-QDEKYQAIGAYYIQHTCFQDES--AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-KLE 81 (457)
T ss_dssp HHHHHHHS-SCTHHHHHHHHHHHHHTSSCSS--HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-HHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCChH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-HHH
Confidence 46677775 6788999999999998864321 22 457899999999999999999999999998642211 111
Q ss_pred H--HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh----hc--------CCHHH
Q 001945 157 F--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----AS--------GEEDV 222 (992)
Q Consensus 157 ~--~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l----~~--------~~~~~ 222 (992)
+ ...++.+.++|..++++.++..|+.+|.+++.. ++..... ....+|.++..+..-. .+ .++++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i-~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHH-HHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHH-HhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 1 134788889998328899999999999999987 3322211 2266777777662100 11 24566
Q ss_pred HHHHHHHHHHHhcCCccchH------HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhH-------------
Q 001945 223 AVIAFEIFDELIESPAPLLG------DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS------------- 283 (992)
Q Consensus 223 ~~~~~~~l~~l~~~~~~~~~------~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~------------- 283 (992)
...++++|..++.. +.... ..++.++..+.....+.+.+......++..+..++-.....
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 77899999999875 33222 23333443333221112224455556655555443100000
Q ss_pred -----------hh-------------------------hcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHH
Q 001945 284 -----------LK-------------------------KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (992)
Q Consensus 284 -----------~~-------------------------~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~ 327 (992)
+. ..-+-...++.+..+|....+ ......+..+|..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~------~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK------DATLEACAGALQNLT 312 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHT
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC------HHHHHHHHHHHHHhc
Confidence 00 000113345555666655432 145556677777765
Q ss_pred HHcch-------hch--HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh-HHHHHHHHHhhcCCCC------
Q 001945 328 LNLAK-------HVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPE------ 391 (992)
Q Consensus 328 ~~~~~-------~~~--~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~~------ 391 (992)
..-+. ..+ ...+|.+.+.+.+++...+..|+++++.++.+.. .... -...+|.++..|..++
T Consensus 313 ~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHHHHhhhHHHHHhccCCCCCCCCc
Confidence 43221 111 2346777788999999999999999999987532 1111 2357888888888654
Q ss_pred hhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccC-ChHHHHHHHHHHHHHHH
Q 001945 392 QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE-SDEVKEKSYYALAAFCE 448 (992)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~ 448 (992)
+.+...++++++.+...-.+...... ...++.+...+.+. +++++..|++.|.+++.
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 36888999999998865533222222 47899999999988 89999999999988763
No 71
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.06 E-value=2.1e-09 Score=105.47 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=142.2
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
...+.+...++++++..|..|+++|+.++.+..+...... ...++.++..+.++++.+|..|+++|+.++.........
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3455666778999999999999999999977655433332 257899999999999999999999999998654332222
Q ss_pred hh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 416 HY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 416 ~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
.. ...+|.++..+.++++.++..|+++|.+++...+...... -...++.|+.++.+++..++..++.+++.++...++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 22 5689999999999999999999999999986443322222 235788999999999999999999999999864332
Q ss_pred cCcccH-HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 494 AFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 494 ~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
...... ...++.|.+++.. ++..++..+..++..++
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 221121 2356777777754 33356667888877764
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=2.5e-07 Score=80.74 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=164.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhh
Q 001945 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK 285 (992)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 285 (992)
.++..+...+.++-|.++..++..+..+++..+....+.+..++-.+-. +. ........-..++.+++..|..++
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sE--aIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SE--AIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CC--SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cc--cCchHHHHHHHHhHHHHhCHHHHH
Confidence 4566666677777788999999999999999999988888887654322 22 333334444677888887776544
Q ss_pred hcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHh
Q 001945 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (992)
Q Consensus 286 ~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (992)
++++.++.-..-.++ ..+.....+++.++...|. ..+.+..-+...+.|+|-..|-+|+..++.++
T Consensus 107 ------~vVp~lfanyrigd~-------kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 107 ------SMIPVLFANYRIGDE-------KTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp ------HHHHHHHHHSCCCSH-------HHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred ------hhHHHHHHHHhcCCc-------cceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 577777765554433 6677778888888887774 45566666667788999999999999999999
Q ss_pred hcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 001945 366 EGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 366 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
++.++.+.|+ +|.++..|.|.+..||.+|..+|+.+++.-+ .+..++..-+..++|.+.-|+.....+|+.
T Consensus 173 en~~~yv~Pf----LprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTTHHHHGGG----HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccCccccCcc----hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9987766665 6677888999999999999999999998753 245577777889999999999888888887
Q ss_pred HH
Q 001945 446 FC 447 (992)
Q Consensus 446 l~ 447 (992)
+.
T Consensus 244 l~ 245 (253)
T 2db0_A 244 LL 245 (253)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.02 E-value=2.5e-09 Score=104.84 Aligned_cols=189 Identities=25% Similarity=0.286 Sum_probs=139.0
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
+..++.+...++++++.+|..|+.+|+.+... ..++.+...+.|+++.||..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 34455566678899999999999999988762 456778888899999999999999998763
Q ss_pred hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
+..++.+...+.++++.||..++.+|..+.. +..++.|...+.++++.+|..++.+++.+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 2467888889999999999999999987732 2345677778889999999999999998742
Q ss_pred cccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 496 IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 496 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
+..++.|...+. +++..+|..+..+++.+. . +..++.+.+.++++++.+|..+..+++.+..
T Consensus 142 ----~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~----~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 ----ERAVEPLIKALK---DEDGWVRQSAADALGEIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ----GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC----S-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC----c-------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 124555666663 334466777888887663 2 2444555555566789999999999988876
Q ss_pred Hcc
Q 001945 576 VLE 578 (992)
Q Consensus 576 ~~~ 578 (992)
..+
T Consensus 204 ~~~ 206 (211)
T 3ltm_A 204 FNH 206 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 74
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.01 E-value=8.9e-08 Score=103.46 Aligned_cols=328 Identities=10% Similarity=0.063 Sum_probs=199.5
Q ss_pred HHHHHHHHhhCCC----------CChHHHHHHHHHHHHHHHhhHhHhhh---cC---ChH---HHHHHHhhhhccCCCCC
Q 001945 248 IVHFSLEVSSSHN----------LEPNTRHQAIQIISWLAKYKYNSLKK---HK---LVI---PILQVMCPLLAESNEAG 308 (992)
Q Consensus 248 li~~~~~~~~~~~----------~~~~~r~~a~~~l~~l~~~~~~~~~~---~~---~~~---~il~~l~~~l~~~~~~~ 308 (992)
.++.+++++...+ -+++.+..|...+..++...|..... .. .++ ...+.+++++.....++
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 4555555555432 24689999999999998765432211 00 111 11234556665543111
Q ss_pred CCCC-------CchHHHHHHHHHHHHHHcc-------hhchHHHHHHHHhhh-------cCCChhhHHHHHHHHHHHhhc
Q 001945 309 EDDD-------LAPDRAAAEVIDTMALNLA-------KHVFPPVFEFASVSC-------QNASPKYREAAVTAIGIISEG 367 (992)
Q Consensus 309 ~d~~-------~~~~~~a~~~l~~l~~~~~-------~~~~~~~~~~l~~~l-------~~~~~~~r~~al~~l~~i~~~ 367 (992)
+++. ....-.|..+|..++..-. ...++.++..+.... .+.+...+..|.++|..++.+
T Consensus 151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~ 230 (458)
T 3nmz_A 151 DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 230 (458)
T ss_dssp CCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC
Confidence 1111 1112256666766543211 223455555543211 112345788999999999976
Q ss_pred CHHHHHHh--HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhc-ccCChHHHHHHHHH
Q 001945 368 CAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNAL-EDESDEVKEKSYYA 442 (992)
Q Consensus 368 ~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l-~~~~~~v~~~a~~~ 442 (992)
....-... ....+|.++..|.++++.++..|+++|+.++..-.+.....+ ...+|.|+..| ...++.++..++.+
T Consensus 231 ~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~a 310 (458)
T 3nmz_A 231 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 310 (458)
T ss_dssp CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 54221111 246799999999999999999999999999864112222221 46789999975 45678899999999
Q ss_pred HHHHHHhhccccccc--hHHHHHHHHHHhcCCCH----hHHHHHHHHHHHHHHH---hhccCcccH-HHHHHHHHHHHhc
Q 001945 443 LAAFCEDMGEEILPF--LDPLMGKLLAALENSPR----NLQETCMSAIGSVAAA---AEQAFIPYA-ERVLELLKIFMVL 512 (992)
Q Consensus 443 l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~----~v~~~a~~~l~~l~~~---~~~~~~~~~-~~~~~~l~~~l~~ 512 (992)
|.++.......-... ....++.|..++.+... .+++.+..++..++.. .++.-.... ...+|.|.+.+..
T Consensus 311 L~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~ 390 (458)
T 3nmz_A 311 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 390 (458)
T ss_dssp HHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC
T ss_pred HHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC
Confidence 999987442211122 23577888888876543 4899999999998863 222111111 1256777777754
Q ss_pred cChhhhHhHHHHHHHHHHHHHhhchhhccCCh-HHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc
Q 001945 513 TNDEDLRSRARATELLGLVAESVGRARMEPIL-PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (992)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~ 579 (992)
.+ ..++..|..+++.++.. .++...... ...++.+.+.+...+..+++.+..++.+++..-+.
T Consensus 391 ~~---~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 391 HS---LTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp SC---HHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CC---hHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 32 34566788888888632 122211112 24677788888888899999999999999876543
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.00 E-value=8.3e-08 Score=83.67 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=159.1
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 337 ~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
.++..+...+.++-|.++..|+..+..+++..++.+.+.+..++-.+- .++.-..-.....++|.++..-++ .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~Pe----~ 104 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKPE----L 104 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCHH----H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCHH----H
Confidence 455555667899999999999999999999988776665544444332 256666667778899999887632 4
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc
Q 001945 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI 496 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 496 (992)
...++|.++....-.+++.|....++|..+....|.. ++.++..+...+.+++..-|..++..++.++....+...
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 4668999999888778999999999999999887753 456777777788888988888999888877655555555
Q ss_pred ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Q 001945 497 PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (992)
Q Consensus 497 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~ 575 (992)
||++ .|..++ .|.+..+|..+.++++.++ ..++ -+..++..-++.+++.+..+...+..+++++.-
T Consensus 181 PfLp----rL~aLL---~D~deiVRaSaVEtL~~lA-~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 PFLP----RIINLL---HDGDEIVRASAVEALVHLA-TLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGHH----HHHGGG---GCSSHHHHHHHHHHHHHHH-TSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cchH----HHHHHH---cCcchhhhHHHHHHHHHHH-HcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5544 444444 3445567899999999998 3333 244555555666888888888888888888764
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.99 E-value=3.3e-08 Score=100.47 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhc
Q 001945 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNAL 428 (992)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l 428 (992)
..|..|+..|..+++.......-.-...+|.++. .|.++++.||..|+++|+.++...+ .....+ ...+|.|+..+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHH
Confidence 4677888888888886432111011245788888 9999999999999999999997653 233322 47899999999
Q ss_pred cc-CChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH-HHHHHH
Q 001945 429 ED-ESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA-ERVLEL 505 (992)
Q Consensus 429 ~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~ 505 (992)
.+ ++..++..|+++|++++...+.....+.. ..++.|..++.+++..++..+..+++.++...++....+. ..+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 84 57899999999999999766543333332 5788889999999999999999999999886433222222 236777
Q ss_pred HHHHHhccChhhhHhHHHHHHHHHHHHHhhchh---hc---cCChHHHHHHHHhccCC-C-CchhhHHHHHHHH
Q 001945 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRA---RM---EPILPPFVEAAISGFGL-E-FSELREYTHGFFS 571 (992)
Q Consensus 506 l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~---~~~~~~i~~~l~~~l~~-~-~~~~r~~~~~~~~ 571 (992)
|..++... +..++..++.+++.++.. ++. .+ .+.+..+++...+.++. + +.++.+.+...+.
T Consensus 214 Lv~LL~~~---d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 214 LVALVRTE---HSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp HHHHHTSC---CSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCC---ChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 88887654 335667889999888854 221 11 12344555444444542 2 3445555444444
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.99 E-value=7.9e-09 Score=100.32 Aligned_cols=188 Identities=25% Similarity=0.278 Sum_probs=142.1
Q ss_pred hchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH
Q 001945 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 412 (992)
...+...+.+.+.+++++|.+|..|+.+|+.+... ..++.++..+.|+++.||..|+++|+.+..
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 34456677778889999999999999999987752 346777888899999999999999988753
Q ss_pred HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
+..++.+...+.++++.||..++.+|..+.. +..++.+...+.++++.+|..++.+++.+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2467888889999999999999999988632 1345667778889999999999999998742
Q ss_pred ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHH
Q 001945 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSN 572 (992)
Q Consensus 493 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~ 572 (992)
+..++.|...+.. ++..+|..++.+++.+. . +..++.+...++++++.+|..+..++++
T Consensus 137 -------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~----~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 -------ERAVEPLIKALKD---EDGWVRQSAADALGEIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -------GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHC----S-------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhC----c-------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2245556666643 34466777888887763 2 2344445555556788999999988887
Q ss_pred HH
Q 001945 573 IA 574 (992)
Q Consensus 573 i~ 574 (992)
+-
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.98 E-value=1.1e-08 Score=100.22 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHcch---hch-HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcC
Q 001945 314 APDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR 388 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~ 388 (992)
..+..+..++..++..... .+. ...++.+...++++++..|..|+.+++.++.+..+...... ...++.++..+.
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 6788888899888754331 111 23577777888999999999999999999976554333222 247899999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHH
Q 001945 389 DPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLL 466 (992)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~ 466 (992)
++++.+|..|+++|+.++........... ...+|.++..+.++++.++..++++|.+++...+...... -...++.|.
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 186 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 99999999999999999976433322222 5789999999999999999999999999987543322222 225788899
Q ss_pred HHhcCCCHhHHHHHHHHHHHHH
Q 001945 467 AALENSPRNLQETCMSAIGSVA 488 (992)
Q Consensus 467 ~~l~~~~~~v~~~a~~~l~~l~ 488 (992)
.++.+.+..++..+..+++.++
T Consensus 187 ~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 187 QLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.94 E-value=1.6e-08 Score=98.14 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHH
Q 001945 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (992)
Q Consensus 247 ~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l 326 (992)
...+.+++.+.++ ++.+|..++..+..+.. ...++.++..+.+. ++..|..+..++..+
T Consensus 14 ~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~-------~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 14 EKVEMYIKNLQDD--SYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE-------DAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCC--CHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCC-------CHHHHHHHHHHHHhh
Confidence 3444555566555 88999999888875542 12344455555432 236777777776554
Q ss_pred HHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhH
Q 001945 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (992)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (992)
. .. ..++.+...+.++++.+|..|+.+++.+... ..++.+...+.|+++.||..|+++|+.+.
T Consensus 73 ~---~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 73 G---DE----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp C---CG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred C---CH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2 22 3445555678899999999999999998653 35677778889999999999999999885
Q ss_pred hhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 407 EYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 407 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
. +..++.+...+.++++.||..++.+|..+- -+..++.|...+.++++.+|..+..+++.
T Consensus 136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3 247788889999999999999999999872 14566777777888899999999999886
Q ss_pred HH
Q 001945 487 VA 488 (992)
Q Consensus 487 l~ 488 (992)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 53
No 80
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.90 E-value=2.2e-08 Score=98.00 Aligned_cols=184 Identities=19% Similarity=0.247 Sum_probs=133.7
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHH
Q 001945 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN 329 (992)
Q Consensus 250 ~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~ 329 (992)
+.++..+.++ +..+|..++..+..+.. +..++.+...+.+. ++.+|..+..++..+.
T Consensus 22 ~~L~~~L~~~--~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 22 EMYIKNLQDD--SYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE-------DAWVRRAAADALGQIG-- 78 (211)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-------CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCC-------CHHHHHHHHHHHHhhC--
Confidence 3334444444 78999999888766542 12344455555432 2367777777776543
Q ss_pred cchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhh
Q 001945 330 LAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 330 ~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (992)
.. ..++.+...++++++.+|..++.+++.+... ..++.+...+.|+++.||..|+++|+.+..
T Consensus 79 -~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 79 -DE----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -CG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -CH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 22 3445555668899999999999999998653 356777888899999999999999998853
Q ss_pred cHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 410 QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 410 ~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
+..++.+...+.|+++.||..++.+|..+-. +..++.|...++++++.+|..+..+++.+..
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2467888899999999999999999998721 5567777888888999999999999998765
Q ss_pred Hh
Q 001945 490 AA 491 (992)
Q Consensus 490 ~~ 491 (992)
..
T Consensus 204 ~~ 205 (211)
T 3ltm_A 204 FN 205 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.89 E-value=6.6e-08 Score=98.26 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=120.0
Q ss_pred HHHHHh-hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 339 FEFASV-SCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 339 ~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
++.+.. .+++++..+|..|+++++.++.+.+..-...+ ...+|.++..++ ++++.+|..|+|+|+.++...++....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 344555 78899999999999999999987654322222 257888888888 568999999999999999876553333
Q ss_pred hh-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHH
Q 001945 416 HY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 416 ~~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 490 (992)
.. ...+|.|+..+.++++.++..|+++|.+++...++...... ..+++.|+.++.+++..+++.++.+++.++..
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 33 46899999999999999999999999999987443322222 26888999999999999999999999999865
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.79 E-value=1.8e-06 Score=100.72 Aligned_cols=296 Identities=9% Similarity=0.098 Sum_probs=214.8
Q ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcccCC--CCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh--cccccHH
Q 001945 83 LIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPHFA 158 (992)
Q Consensus 83 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~--~~~~~~~ 158 (992)
+++.+.. .+..-++.++..++.+...... ...| .++..+...+.+.... ++|+..+..+++..+. .+.+++-
T Consensus 19 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSV-ATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTT-CCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccc-cchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 5555554 2344456677777776653322 1234 6788888888765433 9999999999977653 4566666
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc
Q 001945 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 159 ~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
.+++.+.....| ....||.+|-.+...++...+... ...++|.++..+.. ...|..+..++.++..+++..+
T Consensus 95 ~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 95 QLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp TTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHhH
Confidence 778899999998 889999999999999998885421 24456666665532 3469999999999999999889
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHH
Q 001945 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRA 318 (992)
Q Consensus 239 ~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~ 318 (992)
..+...++.+++.+...+.+. .++++..+...+..++.. ..+.-+.+.+|.++..+.+.++
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~-----~~n~d~~~~~~~~~~~~~~p~~------------ 227 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATET-----VDNKDIERFIPSLIQCIADPTE------------ 227 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGG-----CCCTTTGGGHHHHHHHHHCTTH------------
T ss_pred HHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhc-----CCCcchhhhHHHHHHHhcChhh------------
Confidence 999999999999998887654 889999999998887753 2334566677777777776532
Q ss_pred HHHHHHHHHHHcc-----hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhc--CHHHHHHhHHHHHHHHHhhcC-CC
Q 001945 319 AAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALR-DP 390 (992)
Q Consensus 319 a~~~l~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~i~~~l~~~l~-d~ 390 (992)
.-+|+..++..-- ...+..+.|.+...++...-..+.-+...+..++.- -+....++++.++|.+.+... -.
T Consensus 228 ~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 228 VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIA 307 (986)
T ss_dssp HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCC
T ss_pred hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccC
Confidence 4456666654322 445566788888888876655555555667777763 356778888899998888766 47
Q ss_pred ChhHHHHHHHHHHHhHhhh
Q 001945 391 EQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~ 409 (992)
+|.+|..|-+++..+.+..
T Consensus 308 ~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 308 DPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999988886553
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.72 E-value=1.7e-06 Score=90.60 Aligned_cols=272 Identities=11% Similarity=0.039 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHh---h----cCCHHHHHHHHHHHHHHhcCCccchHHH--
Q 001945 174 NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL---A----SGEEDVAVIAFEIFDELIESPAPLLGDS-- 244 (992)
Q Consensus 174 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l---~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~-- 244 (992)
......|+++|.++.... +....-.-...++.++..+..-. . ..+++.+..+.++|..++......-...
T Consensus 46 ~~~~~~A~~aL~nls~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355667888888887642 11111111345666776664211 1 1235678899999999986544221111
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh-hHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHH
Q 001945 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY-KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (992)
Q Consensus 245 l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l 323 (992)
....++.++.++.++ +++++..+...|..++.. .+. .+. .
T Consensus 125 ~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~-~k~-------------------------------~----- 165 (354)
T 3nmw_A 125 MKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVN-SKK-------------------------------T----- 165 (354)
T ss_dssp CHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHH-HHH-------------------------------H-----
T ss_pred cCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHH-HHH-------------------------------H-----
Confidence 134577777777655 788999988888777642 111 000 0
Q ss_pred HHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH--HHHHHHHHhhcCCCCh----hHHHH
Q 001945 324 DTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGALRDPEQ----FVRGA 397 (992)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l--~~i~~~l~~~l~d~~~----~vr~~ 397 (992)
+. . ...+|.++..+ ..+.+...++.|+.++..++..+.+.-.... ...+|.+...+.++++ .++..
T Consensus 166 --i~-~--~G~Ip~Lv~lL---~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~ 237 (354)
T 3nmw_A 166 --LR-E--VGSVKALMECA---LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 237 (354)
T ss_dssp --HH-H--TTHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHH
T ss_pred --HH-H--CCCHHHHHHHH---hcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHH
Confidence 00 0 11223333322 3456677888888888888875543222221 3578888888886554 48999
Q ss_pred HHHHHHHhHhh--hcHHHHhh-h-hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch-HHHHHHHHHHhcCC
Q 001945 398 ASFALGQFAEY--LQPEIVSH-Y-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENS 472 (992)
Q Consensus 398 a~~~l~~l~~~--~~~~~~~~-~-~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~ 472 (992)
|+++|..++.. ..++.... . ...+|.++..|.+.+..++..|+++|.++....++...... ...++.|..++.+.
T Consensus 238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~ 317 (354)
T 3nmw_A 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 99999999862 12222222 2 46899999999999999999999999999743322222222 25688899999999
Q ss_pred CHhHHHHHHHHHHHHHHHhhc
Q 001945 473 PRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 473 ~~~v~~~a~~~l~~l~~~~~~ 493 (992)
+..+++.+..++..++...+.
T Consensus 318 ~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 318 HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp SHHHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999875443
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.70 E-value=1.4e-06 Score=85.01 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=144.9
Q ss_pred HhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH---HHhh-hh
Q 001945 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE---IVSH-YE 418 (992)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~-~~ 418 (992)
...+.+.+|+.|.+|+..|....+..++.+...++-+++.+.-.+.|.|+.|-..++..|..+...+... +.++ ..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3456788999999999999998887777777778778887776777999999999999999988776432 2233 36
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCccc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 498 (992)
.++|.++.-+.|+...||..+-..+..+...++. ..+++.+.+.+.+.++..|..++..++.+....|-....+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 7899999999999999999999999888765543 2367777888899999999999999999999888553332
Q ss_pred HHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchh
Q 001945 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (992)
Q Consensus 499 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 538 (992)
+ .+.|.+.+.+ +|.+..+|..|+.|+..+-..+|..
T Consensus 206 l-~~~~~ia~ll---~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 L-SVEKTVAPFV---GDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp G-CHHHHHGGGG---GCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred c-cchHHHHHHH---cCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 2 0014444444 4456678999999999988888763
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=0.00032 Score=80.84 Aligned_cols=331 Identities=13% Similarity=0.085 Sum_probs=197.4
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHhhcccCCh
Q 001945 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD--ETSNRVRIAALKAIGSFLEFTNDG 194 (992)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~ 194 (992)
..++..-..++.......+.++...++.+..... .+.+..+.+.|.. ++++.+|..|+.+++-+.....+
T Consensus 357 D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~- 428 (963)
T 4ady_A 357 NSFIKANLPWLGKAQNWAKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR- 428 (963)
T ss_dssp CHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-
T ss_pred chhhhcchhhhhccchHHHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-
Confidence 3344444456654444567778888887754222 2346666666651 26889999999999887655421
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCC--------HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHH
Q 001945 195 AEVVKFREFIPSILNVSRQCLASGE--------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTR 266 (992)
Q Consensus 195 ~~~~~~~~~~~~ll~~l~~~l~~~~--------~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r 266 (992)
. .+..|...+.+++ +.++..++-.|.-..--... . .+++.+..++.++ +...|
T Consensus 429 -------~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e----ev~e~L~~~L~dd--~~~~~ 489 (963)
T 4ady_A 429 -------D----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I----EVYEALKEVLYND--SATSG 489 (963)
T ss_dssp -------H----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H----HHHHHHHHHHHTC--CHHHH
T ss_pred -------H----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHhcC--CHHHH
Confidence 1 1222233333222 45666766666654321111 1 2333334444333 34455
Q ss_pred HHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhh
Q 001945 267 HQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVS 345 (992)
Q Consensus 267 ~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~ 345 (992)
..+...+.-+.-... + ..++..++..+.+.. ....++.+..+|+.+. +| ....+.++..+.
T Consensus 490 ~~AalALGli~vGTg----n----~~ai~~LL~~~~e~~------~e~vrR~aalgLGll~--~g~~e~~~~li~~L~-- 551 (963)
T 4ady_A 490 EAAALGMGLCMLGTG----K----PEAIHDMFTYSQETQ------HGNITRGLAVGLALIN--YGRQELADDLITKML-- 551 (963)
T ss_dssp HHHHHHHHHHHTTCC----C----HHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHH--
T ss_pred HHHHHHHhhhhcccC----C----HHHHHHHHHHHhccC------cHHHHHHHHHHHHhhh--CCChHHHHHHHHHHH--
Confidence 444444433311000 0 123333444333221 1256777777776653 44 445666666543
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHH
Q 001945 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL 425 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~ 425 (992)
.+.+|..|++++.+++...-+..+. ..++.++.. +.+|++..||.+|..+||.+.-.-+ ..++.++
T Consensus 552 -~~~dp~vRygaa~alglAyaGTGn~--~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv 617 (963)
T 4ady_A 552 -ASDESLLRYGGAFTIALAYAGTGNN--SAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIV 617 (963)
T ss_dssp -HCSCHHHHHHHHHHHHHHTTTSCCH--HHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHT
T ss_pred -hCCCHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHH
Confidence 4689999999999988766654332 112222322 3357888999999999997754422 2344454
Q ss_pred Hh-cccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHH
Q 001945 426 NA-LEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLE 504 (992)
Q Consensus 426 ~~-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 504 (992)
.. .++.++.||..+..+++.+....+ ...+++.|..+..+++..||..|+.++|.+.....+...|.+.++..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 43 346789999999999998753322 25677888888899999999999999999887666666677777777
Q ss_pred HHHHHHhc
Q 001945 505 LLKIFMVL 512 (992)
Q Consensus 505 ~l~~~l~~ 512 (992)
.+.+++..
T Consensus 692 ~L~~~~~d 699 (963)
T 4ady_A 692 NFLSVITN 699 (963)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 77777654
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=2e-05 Score=90.68 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=191.0
Q ss_pred cchHHHHHHhhc---CCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCC-------ChHHHHHHHHHHHH
Q 001945 117 PDLLPFLFQFSQ---SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET-------SNRVRIAALKAIGS 186 (992)
Q Consensus 117 ~~ll~~l~~~l~---~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-------~~~vr~~a~~~l~~ 186 (992)
.+-+..|...+. ++++.++.+|+..++-+...... +++..|...+.+++ .+.+|..|+..|+-
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345666666665 56778999999999998765542 34566666665412 26789999888887
Q ss_pred hhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHH
Q 001945 187 FLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTR 266 (992)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r 266 (992)
......+ +.+++.+...+.+++...+..+.-.+.-+.--... ...+..+++.+. ++ .++.+|
T Consensus 464 a~~GS~~-----------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~ai~~LL~~~~----e~-~~e~vr 525 (963)
T 4ady_A 464 AAMGSAN-----------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PEAIHDMFTYSQ----ET-QHGNIT 525 (963)
T ss_dssp HSTTCCC-----------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHH----HC-SCHHHH
T ss_pred HhcCCCC-----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHh----cc-CcHHHH
Confidence 6543322 11333333444445544444555555544211111 233444444433 22 266777
Q ss_pred HHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhh
Q 001945 267 HQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVS 345 (992)
Q Consensus 267 ~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~ 345 (992)
+.+...|.-+.-. +....+.++.. |... +++..|..+..+++.-.-..| ...+..++..+
T Consensus 526 R~aalgLGll~~g------~~e~~~~li~~----L~~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~--- 586 (963)
T 4ady_A 526 RGLAVGLALINYG------RQELADDLITK----MLAS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA--- 586 (963)
T ss_dssp HHHHHHHHHHTTT------CGGGGHHHHHH----HHHC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH---
T ss_pred HHHHHHHHhhhCC------ChHHHHHHHHH----HHhC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---
Confidence 7766555544321 11233334433 3322 223455555555543333334 33344444443
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHH
Q 001945 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424 (992)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l 424 (992)
.++.+..+|.+|+.+||.+.-+-++ .++.++..+ .+.++.||..|..++|.++-.-+. ..++..|
T Consensus 587 ~~d~~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L 652 (963)
T 4ady_A 587 VSDSNDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVL 652 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHH
Confidence 4567788999999999998766432 244444443 478999999999999998765432 3466777
Q ss_pred HHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC--CCHhHHHHHHHHHHHH
Q 001945 425 LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCMSAIGSV 487 (992)
Q Consensus 425 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~v~~~a~~~l~~l 487 (992)
....+|++..||..|+.+|+.+.....+...|.+..++..|.....+ .+...+-.+.-+.|-+
T Consensus 653 ~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 77788999999999999999998776666778889999998888865 3455555555554433
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.58 E-value=1.2e-05 Score=84.21 Aligned_cols=269 Identities=12% Similarity=0.060 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHH--HHHHHHHHhcC----------CCCChHHHHHHHHHHHHhhcccCChhh-HHH
Q 001945 133 EHREVALILFSSLTETIGQTFRPHFA--DMQALLLKCLQ----------DETSNRVRIAALKAIGSFLEFTNDGAE-VVK 199 (992)
Q Consensus 133 ~~~~~al~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~ 199 (992)
.....|+.+|..+..... ....+- ..++.+...|. +..++.++..|+.+|.+++...+.... ...
T Consensus 47 ~~~~~A~~aL~nls~d~e--~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEE--HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567777777764311 111111 12333333332 213577999999999999865421111 101
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH--HHHHHHHHHh-hCCCCChHHHHHHHHHHHHH
Q 001945 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK--SIVHFSLEVS-SSHNLEPNTRHQAIQIISWL 276 (992)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~li~~~~~~~-~~~~~~~~~r~~a~~~l~~l 276 (992)
....+|.++ ..+.+++++++..++++|..+........+..+. ..++.++.++ ... +++++..+...+..+
T Consensus 125 ~~GaIp~LV----~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 125 MKGCMRALV----AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNL 198 (354)
T ss_dssp CHHHHHHHH----HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred cCCcHHHHH----HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 123345554 4566788999999999999998642111122221 2345555542 333 677888888877777
Q ss_pred HHhhHhHhhhcCCh--HHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhH
Q 001945 277 AKYKYNSLKKHKLV--IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYR 354 (992)
Q Consensus 277 ~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r 354 (992)
+...+..-.. +. ...++.+..++....+ +.....+
T Consensus 199 s~~~~~nk~~--i~~~~Gai~~Lv~lL~~~~~-----------------------------------------~~~~~v~ 235 (354)
T 3nmw_A 199 SAHCTENKAD--ICAVDGALAFLVGTLTYRSQ-----------------------------------------TNTLAII 235 (354)
T ss_dssp HTTCHHHHHH--HHHSTTHHHHHHHHTTCCCS-----------------------------------------SSCCHHH
T ss_pred HccChhhhHH--HHHhcCcHHHHHHHhccCCC-----------------------------------------cccHHHH
Confidence 6522111000 00 1223333333322111 0111355
Q ss_pred HHHHHHHHHHhh---cCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh-hhHHHHHHHhcc
Q 001945 355 EAAVTAIGIISE---GCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (992)
Q Consensus 355 ~~al~~l~~i~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ll~~l~~~l~ 429 (992)
+.|+.+|..++. +..+...... ...++.++..|.+++..++..|+++|..++........... ...+|.|+..+.
T Consensus 236 ~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 566666666654 3333222211 24689999999999999999999999999854322222222 578999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhcc
Q 001945 430 DESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 430 ~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
+.+++++..|+++|.+++...+.
T Consensus 316 s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 316 SKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999977554
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.57 E-value=2.8e-06 Score=78.18 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=153.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH-hhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP 456 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 456 (992)
..+..+...+.|.++.++..++.+|+.+.+..+.... ..++.+++.++..+.+++.+|...|..++..+++..+-. ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence 5677888889999999999999999999998754443 356889999999999999999999999999999876532 24
Q ss_pred chHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhc
Q 001945 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (992)
Q Consensus 457 ~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 536 (992)
-+..+...+...+.+++.-++.++.+.++.+ ......+.++..+..++. +++..++..++.++..++..-+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~---Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVV---SPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHh---CCChhHHHHHHHHHHHhhcccC
Confidence 5677888999999999999999999999977 344456778888888883 3456777888999988885443
Q ss_pred hhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhc
Q 001945 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (992)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~ 596 (992)
. ...+..++..+-..++++++.+++.++.++..+... |....+++.+....
T Consensus 183 D---~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~------pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 183 D---SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF------PLLENVKIELLKIS 233 (265)
T ss_dssp S---CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS------CCCSCCHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------cccHhHHHHHHHHH
Confidence 2 123334444455556677899999998888877643 44556666555443
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.7e-06 Score=88.29 Aligned_cols=188 Identities=11% Similarity=0.097 Sum_probs=138.8
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcCHHHHH-----HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH----
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMK-----EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE---- 412 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~-----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 412 (992)
+.+.+.|.+|+.|..|+..+..+....+.... ..+..+.+.+...+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34678999999999999999888776443221 113344567777889999999999999999998865432
Q ss_pred --HHhhhhhHHHHHHH-hcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 413 --IVSHYESVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 413 --~~~~~~~ll~~l~~-~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
...+...++|.++. ++.+..+.++..+..++..++.... ....+++.+...+.+.++.++..++..+..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 23455778888886 4889889999999999988876532 234567778888899999999999999999998
Q ss_pred HhhccCc---ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch
Q 001945 490 AAEQAFI---PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (992)
Q Consensus 490 ~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (992)
..|.... +..+.+++.+...+.. .+..+|..|+.+++.+-+.+|.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d---~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGH---GDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTC---SSHHHHHHHHHHHHHHHTC---
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHhCc
Confidence 8774433 3455666677777743 4456788999999999888885
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.53 E-value=1.6e-06 Score=84.61 Aligned_cols=179 Identities=10% Similarity=0.161 Sum_probs=133.2
Q ss_pred CchHHHHHHHHHHHHHHcchhch---HHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHH---HHHh-HHHHHHHHHh
Q 001945 313 LAPDRAAAEVIDTMALNLAKHVF---PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW---MKEK-LESVLHIVLG 385 (992)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~---~~~~-l~~i~~~l~~ 385 (992)
|..+..|.+.+.......++.++ ..+++.+.-.+.+.+..+-..++..+..+.....+. +.++ ...++|.++.
T Consensus 60 ~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lve 139 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL 139 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34455555555444443333333 335666655566788888888888888876643321 2222 4678999999
Q ss_pred hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHH---
Q 001945 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLM--- 462 (992)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~--- 462 (992)
.+.|+...||..+-.++..+....++ ..+++.++.++.+.++++|..++..+..+++..+-.. ...+
T Consensus 140 KlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~~~ 209 (266)
T 2of3_A 140 KTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLSVE 209 (266)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGCHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----cccccch
Confidence 99999999999999999888776654 3478888899999999999999999999999886542 2234
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHH
Q 001945 463 GKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER 501 (992)
Q Consensus 463 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 501 (992)
+.+..++.+++..||..|+.++..+....|+.+..+.+.
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 778888999999999999999999999988876655443
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.52 E-value=4.2e-06 Score=86.08 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=153.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q 001945 69 AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (992)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~ 148 (992)
.+++......+.-..++.+.+ ++..+|+..-..+..+++. ++ ..--..+.+..-++++++-+|..|+..++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~--~~-e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQS-NDPTLRRMCYLTIKEMSCI--AE-DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGC-CCHHHHHHHHHHHHHHTTT--SS-CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-
T ss_pred CCCchhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC--HH-HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-
Confidence 567776677777777888885 8899998888888777765 32 333678888888999999999999999999864
Q ss_pred hhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001945 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFE 228 (992)
Q Consensus 149 ~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 228 (992)
.+..+.+.+.+.+++.| .++.||+.|+-|..+++...++ .+..+++.+.+.+.+.++-+...++.
T Consensus 134 -----~~m~~~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe---------~v~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 134 -----STMLQAIERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFD---------VVKRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp -----TTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHH---------HHHTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHH---------HHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34567788999999999 9999999999999888766521 22345667777788888888888999
Q ss_pred HHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCC
Q 001945 229 IFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAG 308 (992)
Q Consensus 229 ~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 308 (992)
.+.++.+..+. .+..+++.+. ...-.++-.....+.++..++ +.. ....-..+++.+.+++....+
T Consensus 199 lL~ei~~~d~~----a~~kLv~~l~---~~~l~~~~~q~~llr~l~~~~---~~d--~~~~~~~~~~~l~~~L~~~~~-- 264 (355)
T 3tjz_B 199 LLYHVRKNDRL----AVSKMISKFT---RHGLKSPFAYCMMIRVASRQL---EDE--DGSRDSPLFDFIESCLRNKHE-- 264 (355)
T ss_dssp HHHHHHTTCHH----HHHHHHHHHH---SSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSH--
T ss_pred HHHHHHhhchH----HHHHHHHHHh---cCCCcChHHHHHHHHHHHHhc---ccc--chhhHHHHHHHHHHHHcCCCh--
Confidence 99888765432 2333333221 111112322222222222222 111 011223455666666654332
Q ss_pred CCCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC
Q 001945 309 EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (992)
Q Consensus 309 ~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~ 388 (992)
.+.-.+..++-.+.. .+..........+...+.+++...|++|+..+..++...+..+.. .-..+.++++
T Consensus 265 -----aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li~ 334 (355)
T 3tjz_B 265 -----MVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLVT 334 (355)
T ss_dssp -----HHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------
T ss_pred -----HHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHcc
Confidence 233334444433322 222233334455566788899999999999999999876655543 3455677788
Q ss_pred CCChhHHHHHHHHHH
Q 001945 389 DPEQFVRGAASFALG 403 (992)
Q Consensus 389 d~~~~vr~~a~~~l~ 403 (992)
|++..++.-|+.+|-
T Consensus 335 d~n~sI~t~Aittll 349 (355)
T 3tjz_B 335 DANRSIATLAITTLL 349 (355)
T ss_dssp ---------------
T ss_pred CCcHhHHHHHHHHhh
Confidence 999888877766553
No 92
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.51 E-value=0.00028 Score=83.75 Aligned_cols=450 Identities=10% Similarity=0.060 Sum_probs=222.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CC----cHHHHHHHHhc---CCChhHHHHHHHHHH-----HhhhhcccC
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD-PQ----VVPALVQHLRT---AKTPNVRQLAAVLLR-----KKITGHWAK 70 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~-p~----~~~~l~~il~~---~~~~~~r~~a~~~l~-----~~i~~~~~~ 70 (992)
-+..+++-..|.-+++|+.|+..|....+. |+ .++.+++.|.. +.+...-+-|.-+|. +.+...|.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~- 212 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK- 212 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH-
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH-
Confidence 356778888999999999999999776543 54 46677777765 333222222222221 22333444
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh
Q 001945 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (992)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~ 150 (992)
....+...+++.... ..+.|.+.+..+...+.....+...+..+-..+...+..++.. ...+........+..-
T Consensus 213 ----~~~~~~~ali~~~~~-dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~-i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 213 ----DIGRLIFLLIECCRV-NELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGT-INLQVEAVKLAKKKKR 286 (997)
T ss_dssp ----HHHHHHHHHHHTCSC-SSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSS-TTSHHHHHHHHTTHHH
T ss_pred ----HHHHHHHHHHHhCcC-CCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHHH
Confidence 344555556665443 4566666666666666543222112211111111222212111 1112222222111111
Q ss_pred hcccccHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001945 151 QTFRPHFADMQALLLKCLQDETS--NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFE 228 (992)
Q Consensus 151 ~~~~~~~~~i~~~l~~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~ 228 (992)
.........+...+...+++... +.....++..+.++......+ .=|.++..+.+.+.++.+..+..++.
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~--------~~~~~v~~~~~~l~~dhp~~R~~a~~ 358 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK--------PDKRAVFSIISQISTKHPEIIHLVVK 358 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC--------CCHHHHHHHHGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC--------CCHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 11122233444444555544356 888888888866666444222 11456666667777888888888877
Q ss_pred HHHHHhcCC-------------------ccchH---HHHHHHHHHHHHHhhC----------C-C---------------
Q 001945 229 IFDELIESP-------------------APLLG---DSVKSIVHFSLEVSSS----------H-N--------------- 260 (992)
Q Consensus 229 ~l~~l~~~~-------------------~~~~~---~~l~~li~~~~~~~~~----------~-~--------------- 260 (992)
++..++... |..+. ..-+...+...+-+++ + .
T Consensus 359 ~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p 438 (997)
T 1vsy_5 359 SLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSP 438 (997)
T ss_dssp HHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECT
T ss_pred HHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCC
Confidence 765544320 00000 0000111111111000 0 0
Q ss_pred ------CChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHH----HHc
Q 001945 261 ------LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA----LNL 330 (992)
Q Consensus 261 ------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~----~~~ 330 (992)
.++. -..+++.+..+ .-+..+..++..+.+. .+..+.+. ..-...+..+. +.+
T Consensus 439 ~~~~l~~~~~-e~~i~~~f~~~------------~~~~~~~~l~~~l~qe--~~~~~~F~--~~~v~l~k~lf~l~~rn~ 501 (997)
T 1vsy_5 439 KALKLNLREN-ELEVLKTAGHL------------LTREFLRDVTMNLVQD--NETRGVFS--SGNVSFFSLVILLISSGF 501 (997)
T ss_dssp TCCCCCCCHH-HHHHHHHHHTT------------CCHHHHHHHHHHHHHT--TTTTCCCC--HHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCHH-HHHHHHHHHhh------------cCHHHHHHHHHHHHhh--ccccCccc--cchHHHHHHHHHHHhccc
Confidence 0000 00011111100 0023344444444422 12223333 33334444444 456
Q ss_pred chhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH----HHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHh
Q 001945 331 AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----EWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQF 405 (992)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l 405 (992)
|...++.+.+.+.....+.+-....+|...++-+..|.. +.....-..+.|.+...+. +-++.....=..++..+
T Consensus 502 ~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~ 581 (997)
T 1vsy_5 502 CELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWL 581 (997)
T ss_dssp CCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 788899999999998888887777888888888887642 3333445566777777776 44444332222223333
Q ss_pred HhhhcHHHHhhhhhHHHHHHH--h---cccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHH
Q 001945 406 AEYLQPEIVSHYESVLPCILN--A---LEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480 (992)
Q Consensus 406 ~~~~~~~~~~~~~~ll~~l~~--~---l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a 480 (992)
.....+ ..+..++..++. . ....+.-........|..++...+-.+.. ...++..+. +.++-..+|+..
T Consensus 582 ~~~~Dp---rR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 582 PAVVDL---RRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHSCG---GGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHH
T ss_pred hcCCCh---hhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHH
Confidence 333222 233455555522 1 11222222333455666666555444333 566666666 788889999999
Q ss_pred HHHHHHHHHHh
Q 001945 481 MSAIGSVAAAA 491 (992)
Q Consensus 481 ~~~l~~l~~~~ 491 (992)
...++.+....
T Consensus 656 g~~L~~i~~~~ 666 (997)
T 1vsy_5 656 AKLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhh
Confidence 99888877654
No 93
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.47 E-value=0.00033 Score=81.21 Aligned_cols=90 Identities=22% Similarity=0.191 Sum_probs=65.0
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHh-HHHHH-HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVL-HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (992)
++|.+. .++++++..|..|+.+++.++++.. ...-. -..++ +.+...+.|++..||.+|+.+|+.++...++++..
T Consensus 36 i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLK-DLKSPDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHH-HHSSSCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 344443 3789999999999999999997532 11111 12445 45667789999999999999999999887666655
Q ss_pred hh--hhHHHHHHHhcc
Q 001945 416 HY--ESVLPCILNALE 429 (992)
Q Consensus 416 ~~--~~ll~~l~~~l~ 429 (992)
++ ..+++.+...+.
T Consensus 114 ~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 43 567777777654
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.45 E-value=5.6e-05 Score=69.75 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=141.8
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHH-HhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 338 ~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
.+..+...+.+.|...+..++++++.+....++... ..+..+++.++..+.+++.+|--.|++|++.+.+..+.. .+.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HHH
Confidence 455566678999999999999999999998755443 447889999999999999999999999999999987432 456
Q ss_pred hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc--c
Q 001945 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ--A 494 (992)
Q Consensus 417 ~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~--~ 494 (992)
+..+...+...+.++++-++..+...++.+ ......+.++..+..++.+.+..++..++.++..++...++ .
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 678889999999999998999999998877 33445677888888888889999999999999999887652 3
Q ss_pred CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 001945 495 FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (992)
Q Consensus 495 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (992)
+...++. +..+++.. +..++..|+..+-.+.
T Consensus 187 ~~~I~~e----I~elL~~e---D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 187 LTLILDE----IPSLLQND---NEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGTTTT----HHHHHTCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----HHHHHcCC---CHHHHHHHHHHHHHHH
Confidence 3344333 44455443 3455667887777665
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.39 E-value=0.00068 Score=80.51 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=119.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH--HHHHhhHhHh
Q 001945 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS--WLAKYKYNSL 284 (992)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~--~l~~~~~~~~ 284 (992)
++.-+.+.-.+.-.+++..|-.+|....+..+......++.+++.+-....+. +.+.-..|+.+|. .+... ..
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~--~~~~iKGaLy~L~~k~~~~~---~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDH--DYMKIQVILNVLLIKKIHRK---LM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTC--SCHHHHHHHHHTTSHHHHHH---GG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCC--CHHHHHHHHHHHhhhhhhhH---Hh
Confidence 33333344446678999999999999988777666777777777765543333 3333344555443 22211 11
Q ss_pred hhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--hhchHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 001945 285 KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIG 362 (992)
Q Consensus 285 ~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~ 362 (992)
.+-.++..+.+.++....... .+....+..+...+..... ..+. .+-..+...+..++. .-..++.+..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dK-------psI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~-~i~~~~~~~~ 279 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNE-------LEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDG-TINLQVEAVK 279 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSS-------SSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCS-STTSHHHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCC-------HHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcH-HHHHHHHHHH
Confidence 111255566666666533221 2444444444444443222 1110 000000011211111 1112222222
Q ss_pred HHhhcCHHHHHHhHHHHHHHHHhhc-CCCC--hhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHH
Q 001945 363 IISEGCAEWMKEKLESVLHIVLGAL-RDPE--QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS 439 (992)
Q Consensus 363 ~i~~~~~~~~~~~l~~i~~~l~~~l-~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a 439 (992)
...+...+.....+..+...++... ++.| ++.+..+...+..+..... .+.-+.++..+++.+.++.|.+|..|
T Consensus 280 ~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a 356 (997)
T 1vsy_5 280 LAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLV 356 (997)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHH
Confidence 2222222233344456666666665 3567 8888888887555553331 12224678889999999999999999
Q ss_pred HHHHHHHHHh
Q 001945 440 YYALAAFCED 449 (992)
Q Consensus 440 ~~~l~~l~~~ 449 (992)
..++..++..
T Consensus 357 ~~~l~~il~~ 366 (997)
T 1vsy_5 357 VKSLLSTCNK 366 (997)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877765
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.31 E-value=1.3e-07 Score=83.66 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=89.7
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
..+...+.+...+++++|.+|..|+.+|+.+... . ++.+...++|+++.||..|+++|+.+..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST----------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 4456677777889999999999999998876543 1 4777788899999999999999998763
Q ss_pred HhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 001945 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~ 486 (992)
+..++.+...+.|+++.||..++++|+.+- -+..++.|...+++++..+|..+..+++.
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235777888888999999999999999873 13467778888888899999999888764
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.31 E-value=9.4e-06 Score=82.78 Aligned_cols=180 Identities=9% Similarity=0.069 Sum_probs=135.0
Q ss_pred CCCchHHHHHHHHHHHHHHcch-----h---chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH------HHHHHhH
Q 001945 311 DDLAPDRAAAEVIDTMALNLAK-----H---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKL 376 (992)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~~-----~---~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~------~~~~~~l 376 (992)
-.|..|..|.+.+..+....+. . .+..+.+.+...+.+.+..+...++.++..+++.+. .......
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~ 100 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLI 100 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHH
Confidence 3578888888877666554331 1 122334556677889999999999999999987542 3334456
Q ss_pred HHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccc-
Q 001945 377 ESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI- 454 (992)
Q Consensus 377 ~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~- 454 (992)
..++|.++. ++.|..+.+|..+..++..+++... ....+++.+...+.+.+++++..++.+|..++..++...
T Consensus 101 ~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 101 STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 778887776 5899999999999999988876542 123467778889999999999999999999999886432
Q ss_pred --ccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccC
Q 001945 455 --LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (992)
Q Consensus 455 --~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (992)
.+.++.+++.+..++.+.+..||..|..+++.+...+|+..
T Consensus 176 ~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 34677888889999999999999999999999988777543
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.30 E-value=0.0036 Score=68.61 Aligned_cols=317 Identities=10% Similarity=0.100 Sum_probs=178.2
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHcccCC-
Q 001945 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP- 112 (992)
Q Consensus 35 ~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~- 112 (992)
+.+..|..-+.++.-.+-|+.|...||..-++++. +.-..=...|+..|..+ .+..+-+.+-.++..+......
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~----~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL----EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT----HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH----HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 35667777777777777888888888776433322 22222223444555443 2333333344444333321110
Q ss_pred C--------------------CCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH---HHHHHHHHhcC
Q 001945 113 A--------------------GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA---DMQALLLKCLQ 169 (992)
Q Consensus 113 ~--------------------~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~---~i~~~l~~~l~ 169 (992)
. -.-++-++.++.++++.+-.+|..++++|..++...+....+.+- .-++.+...|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 0 012456888999999999999999999999999887764444332 35778889999
Q ss_pred CCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCc---cchHH--H
Q 001945 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---PLLGD--S 244 (992)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~---~~~~~--~ 244 (992)
+ +...+|..|+..|..+.....+-...-.|.+.++.++..+..-=..+...+...|+.++..++..++ .+|.. .
T Consensus 177 d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 177 D-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp C-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred C-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9 8899999999999999887643333444556677777766532111233577889999999998764 22221 2
Q ss_pred HHHHHHHHHHHhhCCC----CChHHHHH---HHHHHHHHHHhhH---------hHhhhcCChHHHHHHHhhhhccCCCCC
Q 001945 245 VKSIVHFSLEVSSSHN----LEPNTRHQ---AIQIISWLAKYKY---------NSLKKHKLVIPILQVMCPLLAESNEAG 308 (992)
Q Consensus 245 l~~li~~~~~~~~~~~----~~~~~r~~---a~~~l~~l~~~~~---------~~~~~~~~~~~il~~l~~~l~~~~~~~ 308 (992)
++.+. .++..++ ..+..... ++.++..++.... ..+...+ ++..++.++....-
T Consensus 256 i~~L~----~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g----~l~~Ll~ll~~~~~-- 325 (651)
T 3grl_A 256 IQRMK----PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG----LLQQLCTILMATGV-- 325 (651)
T ss_dssp GGGGG----GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT----HHHHHHHHHTCSSC--
T ss_pred HHHHH----HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC----CHHHHHHHHccCCC--
Confidence 22222 2222221 11112222 3334433432211 1112222 34444554443211
Q ss_pred CCCCCchHHHHHHHHHHHHHHcc--hh-----------chHHHHHHHHhhhcC-CChhhHHHHHHHHHHHhhcCH
Q 001945 309 EDDDLAPDRAAAEVIDTMALNLA--KH-----------VFPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCA 369 (992)
Q Consensus 309 ~d~~~~~~~~a~~~l~~l~~~~~--~~-----------~~~~~~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~ 369 (992)
....+..+..++..+.+..+ ++ -.|.++..+...+++ .....|.+|+.++.+...+..
T Consensus 326 ---p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 326 ---PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred ---CHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 01345555555555443222 11 124555555555544 457889999999999887654
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.17 E-value=2.6e-06 Score=88.72 Aligned_cols=159 Identities=12% Similarity=0.150 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChh
Q 001945 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (992)
.+|.+++++++.+ .+++.+ .. ++..+...+..+.|.+|++++.++..+.+-.. .++.+++.++.+|.|++..
T Consensus 243 PVRETaAQtLGaL-~hLp~e-~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-ND-IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-CC-HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHH
T ss_pred ehHHHHHHHHHHH-HhCChh-HH-HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccH
Confidence 4688999999998 777755 33 33333345688899999999999999833221 2789999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCC--hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcC
Q 001945 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (992)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 471 (992)
||..|+.+|..++ .+ ..++.++..+..+|.+.+ ..........|..++..-...- ..+.+++.|.+.+.+
T Consensus 315 VRAVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 315 IKLLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTC
T ss_pred HHHHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcC
Confidence 9999999998888 21 345567777777766432 2223445566666665443211 113889999999999
Q ss_pred CCHhHHHHHHHHHHHHH
Q 001945 472 SPRNLQETCMSAIGSVA 488 (992)
Q Consensus 472 ~~~~v~~~a~~~l~~l~ 488 (992)
+-.+||.+++.++.++.
T Consensus 387 tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SSHHHHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.08 E-value=6.6e-05 Score=77.25 Aligned_cols=304 Identities=11% Similarity=0.105 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcc-cCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCC
Q 001945 95 VRRASANVVSIIAKY-AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETS 173 (992)
Q Consensus 95 vr~~~~~~l~~i~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 173 (992)
.|+.+..++..+... .+++.+...+++.+..++++++...+..+...+..+... ++. .+ -+.+.+.+=+++ ++
T Consensus 44 c~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e---~i-Lv~Nsl~kDl~~-~N 117 (355)
T 3tjz_B 44 CAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED---VI-IVTSSLTKDMTG-KE 117 (355)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC---GG-GGHHHHHHHHHS-SC
T ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH---HH-HHHHHHHhhcCC-Cc
Confidence 344555555554432 222223456777888899999998888888888777665 221 11 346677777888 89
Q ss_pred hHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 001945 174 NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSL 253 (992)
Q Consensus 174 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~ 253 (992)
+-+|..|+++++++..-. +++.+...+.+++.+.++.++..|+-+...+....|......+. .+.
T Consensus 118 ~~iR~lALRtL~~I~~~~-----------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~----~l~ 182 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDST-----------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN----EAQ 182 (355)
T ss_dssp HHHHHHHHHHHHHHCCTT-----------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH----HHH
T ss_pred HhHHHHHHHHHhcCCCHH-----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH----HHH
Confidence 999999999999875432 44667777778888999999999999988888887775554333 333
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcchh
Q 001945 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (992)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~~~ 333 (992)
+...+. ++.+...|+.++..+.+..+..+. .+++ .+.+.
T Consensus 183 ~ll~d~--n~~V~~~Al~lL~ei~~~d~~a~~------kLv~----~l~~~----------------------------- 221 (355)
T 3tjz_B 183 EAASSD--NIMVQYHALGLLYHVRKNDRLAVS------KMIS----KFTRH----------------------------- 221 (355)
T ss_dssp HHTTCS--SHHHHHHHHHHHHHHHTTCHHHHH------HHHH----HHHSS-----------------------------
T ss_pred HHhcCC--CccHHHHHHHHHHHHHhhchHHHH------HHHH----HHhcC-----------------------------
Confidence 344333 666777777666666543211111 1111 11100
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
.+.+ .| +-+..+..+...+++.-...-..+++.+.+.+++.++.|...|++++-.+...- .
T Consensus 222 -----------~l~~-~~----~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~-- 282 (355)
T 3tjz_B 222 -----------GLKS-PF----AYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-A-- 282 (355)
T ss_dssp -----------CCSC-HH----HHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred -----------CCcC-hH----HHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-H--
Confidence 0000 11 111222222222222111223578888999999999999999999998765421 1
Q ss_pred HhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 001945 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l 484 (992)
..+....+.+...+.++++.+|-.|+..|..++...+..+..+- ..+..++.+++..++.-|+..+
T Consensus 283 -~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n----~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 283 -KELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACN----LDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred -HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHH----HHHHHHccCCcHhHHHHHHHHh
Confidence 12233445555666677788999999999999887776554433 3455566778887777666554
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.01 E-value=5.2e-05 Score=79.27 Aligned_cols=219 Identities=17% Similarity=0.135 Sum_probs=141.4
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHH------HHHh-HHH-HHHHHHhhcCC-----CChhHHHHHHH
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW------MKEK-LES-VLHIVLGALRD-----PEQFVRGAASF 400 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~------~~~~-l~~-i~~~l~~~l~d-----~~~~vr~~a~~ 400 (992)
.+. +.+.+...+.++.|..|++|..+|..+....... .... .-. +.=..+..+.| --..||.+|++
T Consensus 172 Pfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 172 VLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp GGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 444 6667777789999999999999999988643210 0000 111 11122223333 23579999999
Q ss_pred HHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHH
Q 001945 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480 (992)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a 480 (992)
+||.+ ..++++ -.++..++..+..+.+.||..+.-.|.-+ . .+..-++.+++.++..|.+.+.+||..|
T Consensus 251 tLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~-DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 251 LLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL----K-EFVEDKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----G-GGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH----H-HHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence 99999 877654 24566666677788899999999999877 2 2222289999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCc
Q 001945 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS 560 (992)
Q Consensus 481 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 560 (992)
.+++.-++ ....++.++..+=+.+...+| -....+..+..++.+.. .+.. .. .-+.+++.+...+...-+
T Consensus 320 AetLiPIA------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s-~p~~-a~-~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 320 AELLCHFP------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYR-ENPE-LS-IPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HHHHTTSC------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHH-HCTT-CC-CCSGGGGGTGGGGTCSSH
T ss_pred HHHhhhhc------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHc-CCcc-cc-cChHHHHHHHhhhcCCcH
Confidence 99988777 224566677766666665432 11223445666776663 2221 11 112445555555556666
Q ss_pred hhhHHHHHHHHHHH
Q 001945 561 ELREYTHGFFSNIA 574 (992)
Q Consensus 561 ~~r~~~~~~~~~i~ 574 (992)
.+|.+++.++..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665443
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.88 E-value=0.052 Score=59.63 Aligned_cols=324 Identities=12% Similarity=0.131 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhhhh-
Q 001945 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTETIGQ- 151 (992)
Q Consensus 75 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~l~~~~~~- 151 (992)
....-...|...+.+.+-..-|+.+...+..+++. ++..--..=++.++..++. .+.+....++.+|..+....++
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 34455556777777777888999999999988752 2210011126677777765 3567788888888766543221
Q ss_pred -----------cccccH-------HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHH
Q 001945 152 -----------TFRPHF-------ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (992)
Q Consensus 152 -----------~~~~~~-------~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 213 (992)
.+.... ++-++.+..+|.. .+..+|..++++|..++...+.. ....--..|.-+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~--~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQ--VQQIILVSPMGVSRLMD 173 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHH--HHHHHHHSTTHHHHHHG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHH--HHHHHHhCcccHHHHHH
Confidence 000011 2346788889988 99999999999999998876321 11111112445555666
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCCccchHHHH-HHHHHHHHHHhhCCCC--ChHHHHHHHHHHHHHHHhhH---hHhhhc
Q 001945 214 CLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNL--EPNTRHQAIQIISWLAKYKY---NSLKKH 287 (992)
Q Consensus 214 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~li~~~~~~~~~~~~--~~~~r~~a~~~l~~l~~~~~---~~~~~~ 287 (992)
.+.+..+.+|..++-.|..+...++..-+-.. ...++.++.++..... ...+-.-++.++..+.+..+ +.+++.
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 77788888999999999999987654322111 1234555555443321 23455678888888887654 334444
Q ss_pred CChHHHHHHHhhhhccCCCCCCCCCCchHHHH-----HHHHHHHHHHcch---------hch-HHHHHHHHhhhcCC--C
Q 001945 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAA-----AEVIDTMALNLAK---------HVF-PPVFEFASVSCQNA--S 350 (992)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a-----~~~l~~l~~~~~~---------~~~-~~~~~~l~~~l~~~--~ 350 (992)
.+++.+ .+++.. ++++..|...+.+ ..++..+...-+. .++ .-+++.+.+.+.++ .
T Consensus 254 ~~i~~L----~~LL~~---~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 254 SYIQRM----KPWFEV---GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326 (651)
T ss_dssp TCGGGG----GGGGCC---CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCC
T ss_pred CCHHHH----HHHhCC---CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCC
Confidence 444443 344432 1234567744432 2233333221110 111 11333344444443 4
Q ss_pred hhhHHHHHHHHHHHhhcCHHH---HHHh-------HHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhh
Q 001945 351 PKYREAAVTAIGIISEGCAEW---MKEK-------LESVLHIVLGALRD-PEQFVRGAASFALGQFAEYL 409 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~---~~~~-------l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 409 (992)
...|..|+.+++.+..+.+.. +... .+.++..++..+++ ....+|.+|+.|+..+....
T Consensus 327 ~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 678889999999999876532 2211 12345555555654 45789999999999998664
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.86 E-value=2e-05 Score=69.49 Aligned_cols=86 Identities=23% Similarity=0.207 Sum_probs=71.6
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh
Q 001945 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (992)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (992)
+.+...+++++|.+|..|+.+++.+... ..++.+...++|+++.||..|+++|+.+.. +.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~----------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~ 104 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDE----------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ER 104 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSH----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HH
Confidence 5566778899999999999999987642 447777788889999999999999998763 23
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHH
Q 001945 420 VLPCILNALEDESDEVKEKSYYALAA 445 (992)
Q Consensus 420 ll~~l~~~l~~~~~~v~~~a~~~l~~ 445 (992)
.++.|...+.++++.||..|+.+|..
T Consensus 105 a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 105 VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 67888888899999999999998864
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.85 E-value=0.044 Score=63.41 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=94.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (992)
++|.+ +.++++++..|..|+.++..+++..... +...-..+.+++..+|.| ++..||.+|+.+|.+++.........
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45555 4578888999999999999998642211 111112244566778898 99999999999999987654211101
Q ss_pred HH-HHhhHHHHHHHHHHHhh---c-------CC-------HHHHHHHHHHHHHHhcCCccchHHH-----HHHHHHHHHH
Q 001945 198 VK-FREFIPSILNVSRQCLA---S-------GE-------EDVAVIAFEIFDELIESPAPLLGDS-----VKSIVHFSLE 254 (992)
Q Consensus 198 ~~-~~~~~~~ll~~l~~~l~---~-------~~-------~~~~~~~~~~l~~l~~~~~~~~~~~-----l~~li~~~~~ 254 (992)
.. -.+.++.++..+..... . .. +++...++.+|..+++.....+... ++.++..+.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~- 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI- 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH-
Confidence 11 12456666666543221 1 01 1223345566666666554433222 333333332
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHhhHhH
Q 001945 255 VSSSHNLEPNTRHQAIQIISWLAKYKYNS 283 (992)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 283 (992)
.......+++..+.++|..+.+..+..
T Consensus 193 --~~~~~~~~v~~~a~~~L~~ls~dn~~~ 219 (684)
T 4gmo_A 193 --SADIAPQDIYEEAISCLTTLSEDNLKV 219 (684)
T ss_dssp --HHCCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred --hcCCCcHHHHHHHHHHHHHHhccCHHH
Confidence 223346789999999999998765543
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.67 E-value=0.046 Score=57.05 Aligned_cols=270 Identities=14% Similarity=0.134 Sum_probs=149.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHH
Q 001945 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (992)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (992)
...++...+. +...+..|.+.+..+...+|+. .+.-++.+..+..+ .+..||..|++.|..++..
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~--------- 95 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCED-EDVSIRRQAIKELPQFATG--------- 95 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT---------
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh---------
Confidence 3445554544 4677788888888888888754 45556667777788 9999999999998887754
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 001945 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (992)
Q Consensus 200 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (992)
.+++.+..+|.++++.+++.....+-++|.++....++ .+...+.++. ++ ++.+|..++.||..-..
T Consensus 96 --~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~--------~~--~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 96 --ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL--------QG--EDIVRERAIKFLSTKLK 163 (507)
T ss_dssp --TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--------HS--CHHHHHHHHHHHHHHGG
T ss_pred --hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc--------cc--chHHHHHHHHHHHHHHh
Confidence 24677888888999988888888888888888876654 2222222222 23 68899999999865443
Q ss_pred hhHhHhhhcCChH-HHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc--hh--chHHHHHHHHhhh------c
Q 001945 279 YKYNSLKKHKLVI-PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KH--VFPPVFEFASVSC------Q 347 (992)
Q Consensus 279 ~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~--~~--~~~~~~~~l~~~l------~ 347 (992)
..+..... +.++ -++..+...|.+... ....-+++.+ ..+. +. -...+++++.+.. .
T Consensus 164 ~l~~~~l~-~E~E~~i~~~ikK~L~DVT~----------~EF~L~m~lL-~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~ 231 (507)
T 3u0r_A 164 TLPDEVLT-KEVEELILTESKKVLEDVTG----------EEFVLFMKIL-SGLKSLQTVSGRQQLVELVAEQADLEQTFN 231 (507)
T ss_dssp GSCTTTSC-HHHHHHHHHHHHHHTTSCCH----------HHHHHHHHHH-HTSGGGSSHHHHHHHHHHHHHHHTTTSCCC
T ss_pred hcchhhcc-HHHHHHHHHHHHHHhccccH----------HHHHHHHHHH-HhcccccCchHHHHHHHHHHHHHhccCCCC
Confidence 32221111 1111 233444444533221 0111111111 1111 11 0123344433321 1
Q ss_pred CCChh--hHH--HHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHhHhhhc--HHHHhh
Q 001945 348 NASPK--YRE--AAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP-----EQFVRGAASFALGQFAEYLQ--PEIVSH 416 (992)
Q Consensus 348 ~~~~~--~r~--~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~--~~~~~~ 416 (992)
..|.. .|. +.-.++-.++.+... ..++.-+...+++.+++- .+..|..-++++..++.+.+ +.....
T Consensus 232 ~sD~e~vdRlI~C~~~ALP~FS~~v~S--tkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~ 309 (507)
T 3u0r_A 232 PSDPDCVDRLLQCTRQAVPLFSKNVHS--TRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETN 309 (507)
T ss_dssp SSCHHHHHHHHHHHHHHGGGCBTTBCC--HHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHH
Confidence 12222 222 222223233333221 123444455555555542 22367778899999988876 334456
Q ss_pred hhhHHHHHHHhccc
Q 001945 417 YESVLPCILNALED 430 (992)
Q Consensus 417 ~~~ll~~l~~~l~~ 430 (992)
++.+...|...+-.
T Consensus 310 l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 310 LRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHCCC
Confidence 66677777766653
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.65 E-value=0.0025 Score=61.41 Aligned_cols=151 Identities=14% Similarity=-0.019 Sum_probs=103.6
Q ss_pred HHHHHHhhhcCCCh--hhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH
Q 001945 338 VFEFASVSCQNASP--KYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (992)
Q Consensus 338 ~~~~l~~~l~~~~~--~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (992)
.++.+.+.+.+++. ..+..|..++..++.+..+.-.... ...+|.++..|.++++.+|..|+++|..++..-...-.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35566667888887 7777888889888876543222221 24679999999999999999999999999874322111
Q ss_pred h-hhhhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhc----------------CCCHhH
Q 001945 415 S-HYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE----------------NSPRNL 476 (992)
Q Consensus 415 ~-~~~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~----------------~~~~~v 476 (992)
. .-...+|.+++.|. ..+..++..++.+|.++....... ......-++.|...+. ..+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 1 12568999999997 467899999999999986433211 1122233444443321 125689
Q ss_pred HHHHHHHHHHHHH
Q 001945 477 QETCMSAIGSVAA 489 (992)
Q Consensus 477 ~~~a~~~l~~l~~ 489 (992)
+.++..++.+++.
T Consensus 168 ~~na~~~L~nLss 180 (233)
T 3tt9_A 168 FYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 107
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=97.42 E-value=0.32 Score=56.28 Aligned_cols=447 Identities=10% Similarity=0.115 Sum_probs=228.5
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH--hhhhhHHHHHHHhcc--cCChHHHHHHHHHHHHHHHhhc
Q 001945 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALE--DESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~ll~~l~~~l~--~~~~~v~~~a~~~l~~l~~~~~ 451 (992)
.+.++..+.+.+. ++ .+..+++-+...++-... .+....+|.++..=. +.++..-.+....++++++..-
T Consensus 129 ~~eil~e~~p~l~-p~-----s~~~~~~~l~~fLP~~~~~~~~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~ 202 (799)
T 1vsy_4 129 LVDTMNFLLSSLA-PS-----TMMAVMPIVTSVVPYHYHIHSKIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVH 202 (799)
T ss_dssp HHHHHHHHGGGCS-TT-----THHHHHHHHHHHSCCCCCSSCCSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ch-----hHHHHHHHHHHHcCCCCCchhhhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhh
Confidence 5567777777774 32 344555555444421111 122234555555322 2234555566667777776521
Q ss_pred ------------c--ccccc-------hHHHHHHHHHHhcCCC--HhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHH
Q 001945 452 ------------E--EILPF-------LDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKI 508 (992)
Q Consensus 452 ------------~--~~~~~-------~~~l~~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 508 (992)
. ...+| ++.++..+.+.+.+.. .....-|-..+..+....++.+..++..++..+..
T Consensus 203 ~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~ies 282 (799)
T 1vsy_4 203 NKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIET 282 (799)
T ss_dssp HHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHH
T ss_pred hhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhc
Confidence 1 25689 9999999998887321 11111111111111111123455677778888877
Q ss_pred HHhccChhhhHh--HHHHHHHHHHHHHhhchhhc-----------------cCChHHHHHHHHhccCCCCchhhHHHHHH
Q 001945 509 FMVLTNDEDLRS--RARATELLGLVAESVGRARM-----------------EPILPPFVEAAISGFGLEFSELREYTHGF 569 (992)
Q Consensus 509 ~l~~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~-----------------~~~~~~i~~~l~~~l~~~~~~~r~~~~~~ 569 (992)
++-..+...+.. ..-....+..+.+.+..+.. ..++.-+++.+..++-+.+..+...+..+
T Consensus 283 y~HPSN~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~ 362 (799)
T 1vsy_4 283 FIHPSNNGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISC 362 (799)
T ss_dssp HHSTTCCSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHH
Confidence 775544443321 11112222233333333211 11223344444555667788888999999
Q ss_pred HHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHH
Q 001945 570 FSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAAT 649 (992)
Q Consensus 570 ~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~ 649 (992)
+..++...+..-.-.+|.++..+..+++.. . +.+ ..--.+|+
T Consensus 363 l~~La~l~P~~~~lVlP~vL~r~y~sLe~~--~---l~e---------------------------------~Hrl~~aL 404 (799)
T 1vsy_4 363 FAYLLELDPSNAYLIYDKILIDLYDTLADQ--F---INS---------------------------------RHRIISSL 404 (799)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHHHHHTTT--T---TTC---------------------------------HHHHHHHH
T ss_pred HHHHHhcCCCccceehHHHHHHHHHHhccc--c---ccc---------------------------------hhHHHHHH
Confidence 999998655332334566666665554310 0 000 01225677
Q ss_pred HHHHHHHHHhc--ccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCC-------------------
Q 001945 650 QALGLFALHTK--SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHN------------------- 708 (992)
Q Consensus 650 ~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~------------------- 708 (992)
.++..++..+- ..+.+++..++..+++-++..+..--..++..+..+...+. ..+-.+
T Consensus 405 ~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip-i~d~s~~~~~~~~~~~~~~~~~~~~ 483 (799)
T 1vsy_4 405 KQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP-IQDLTGEDDYISFESDTLPLVQQHF 483 (799)
T ss_dssp HHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC-BCCCCCCCTTCCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc-ccccCCcchhhhhhhhhhhhhhhhh
Confidence 78877776653 35677888888888888886655533445555555544221 000000
Q ss_pred -------------CC-----------hHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 001945 709 -------------EG-----------PAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRL 764 (992)
Q Consensus 709 -------------~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l 764 (992)
.. .....+++..++.+++..+....+..+...+..++..++..+. .+.++.+
T Consensus 484 ~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS----~~if~~~ 559 (799)
T 1vsy_4 484 YHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMD----DKIFNYF 559 (799)
T ss_dssp HHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBC----HHHHHHH
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCC----HHHHHHH
Confidence 00 0113455556666666665543333444333344444444444 4445555
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhH----HHHHHHHhCCChHHHHHHHHHHHHHh----hcCC
Q 001945 765 VDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDL----LPAFAKSMGPHFAPIFAKLFDPLMKF----AKSS 836 (992)
Q Consensus 765 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~~~~l~~~l~~~----l~~~ 836 (992)
+..+.+......... . ...++++ +..+++..+. . ++.++|.+... +.+.
T Consensus 560 l~k~~~fv~~n~~~~--------------a-----~~~v~~L~~~~~~a~~~~~P~-~---~~~~~p~l~~~i~~~i~~g 616 (799)
T 1vsy_4 560 ASLLNRNFWSNDSFK--------------E-----KDPNYELVTIPLAALVRRNNG-L---SKELVRTLLFHIKEQIKRG 616 (799)
T ss_dssp HHHHHHHHHSCSCCC--------------S-----SSCCTHHHHHHHHHHHHHCGG-G---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhh--------------H-----HHHHHHHHHHHHHHHHHhCHH-H---HHHHHHHHHHHHHHHHhcc
Confidence 555554443322100 0 0123444 5667777666 3 44455544432 2221
Q ss_pred -----CC------ccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcC-CCChHhHHHHHHHHHHHH
Q 001945 837 -----RP------LQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELA-SPDAMNRRNAAFCVGELC 894 (992)
Q Consensus 837 -----~~------~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~vr~~a~~~l~~l~ 894 (992)
.. ...-..-+.+|+.++++.|..+.+|.++++..+-..+. .....+-..++..+..+.
T Consensus 617 a~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 617 AGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSAL 686 (799)
T ss_dssp TTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred ccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 10 11234788999999999999999999998887776664 233332233444444443
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.41 E-value=0.17 Score=52.85 Aligned_cols=323 Identities=14% Similarity=0.141 Sum_probs=174.6
Q ss_pred HHHHHHHhCC-CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHH
Q 001945 24 EDQIKRLAKD-PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASAN 101 (992)
Q Consensus 24 ~~~l~~~~~~-p~~~~~l~~il~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~ 101 (992)
.+.|...+.+ ++-......|+.. ..++..+++|+.++-+.+ ..+ |+.++.-.+.++.+.. |.+..||.++..
T Consensus 14 ~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kff----k~F-P~l~~~Ai~a~lDLcE-Ded~~IR~qaik 87 (507)
T 3u0r_A 14 YGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFF----KHF-PELADSAINAQLDLCE-DEDVSIRRQAIK 87 (507)
T ss_dssp HHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHG----GGC-GGGHHHHHHHHHHHHT-CSSHHHHHHHHH
T ss_pred hhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----hhC-hhhHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3344443333 3333334444433 346899999998887764 333 3455555556666666 688999999999
Q ss_pred HHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHH
Q 001945 102 VVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAAL 181 (992)
Q Consensus 102 ~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~ 181 (992)
.+..+++. ...+.+...|.++++.+++.-....-..|..+...-+. ..+-.++....+ ++..+|..++
T Consensus 88 ~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk------~tl~~lf~~i~~--~~e~~Rer~l 155 (507)
T 3u0r_A 88 ELPQFATG----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK------GTLGGLFSQILQ--GEDIVRERAI 155 (507)
T ss_dssp HGGGGCCT----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHH--SCHHHHHHHH
T ss_pred hhHHHhhh----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH------HHHHHHHHHHcc--cchHHHHHHH
Confidence 98888875 14577888999999988876555555555555543331 112222223322 4688999999
Q ss_pred HHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCC-C
Q 001945 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSH-N 260 (992)
Q Consensus 182 ~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~-~ 260 (992)
+.+..-+......... .+.-..+...+.+.+.+-..+.....+.+|..+--. .. -.....+++++...+.-. .
T Consensus 156 kFi~~kl~~l~~~~l~---~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~-~t--~~g~qeLv~ii~eQa~L~~~ 229 (507)
T 3u0r_A 156 KFLSTKLKTLPDEVLT---KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL-QT--VSGRQQLVELVAEQADLEQT 229 (507)
T ss_dssp HHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG-SS--HHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhcchhhcc---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc-cC--chHHHHHHHHHHHHHhccCC
Confidence 9887765544322111 112233555566666555555555555555332111 11 123456677766665422 1
Q ss_pred ---CChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccCCCCCCCCCCchHHHHHHHHHHHHHHcc-----h
Q 001945 261 ---LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----K 332 (992)
Q Consensus 261 ---~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~d~~~~~~~~a~~~l~~l~~~~~-----~ 332 (992)
.|++.-...+.++....-.........+|+.-+...++|.+....+.++++ ..+.....++..++...+ .
T Consensus 230 f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~--~~kL~LLK~lAE~s~~~~~~e~a~ 307 (507)
T 3u0r_A 230 FNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGL--DIQLEVLKLLAEMSSFCGDMEKLE 307 (507)
T ss_dssp CCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CC--CHHHHHHHHHHHHHTTCCCCTTHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccch--HHHHHHHHHHHHHccCCCccchHH
Confidence 234433333444433222222222222355555566666655543322222 234444555555565555 2
Q ss_pred hchHHHHHHHHhhhcC-----------------CChhhHHHHHHHHHHHhhcCHHHH
Q 001945 333 HVFPPVFEFASVSCQN-----------------ASPKYREAAVTAIGIISEGCAEWM 372 (992)
Q Consensus 333 ~~~~~~~~~l~~~l~~-----------------~~~~~r~~al~~l~~i~~~~~~~~ 372 (992)
..++.+++.+...+-- -++..-++.++++-.++...++.+
T Consensus 308 ~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 308 TNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 3455666655544311 034566788888888888777654
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.40 E-value=0.0022 Score=61.77 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=118.5
Q ss_pred HHHHHhhcCCCCh--hHHHHHHHHHHHhHhhhcHHHHhh-hhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc-cc
Q 001945 380 LHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-IL 455 (992)
Q Consensus 380 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~ 455 (992)
+|.++..|.++++ .++..|++++..++..-.+.-... -...+|.|++.|.++++.+|..|+++|.++....++. ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6778888887776 899899999999886543322222 2467899999999999999999999999998643221 11
Q ss_pred cchHHHHHHHHHHhc-CCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHh----ccC---------hhhhHhH
Q 001945 456 PFLDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV----LTN---------DEDLRSR 521 (992)
Q Consensus 456 ~~~~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~----~~~---------~~~~~~~ 521 (992)
-.-...++.|+.++. ..+..+++.+..++-.++...... ......-+|.|.+.+. -.. ..+..++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 111256777888886 568899999998888886432211 1122333454444321 011 0133556
Q ss_pred HHHHHHHHHHHHh--hchhhccC---ChHHHHHHHHhccCC--CCchhhHHHHHHHHHHH
Q 001945 522 ARATELLGLVAES--VGRARMEP---ILPPFVEAAISGFGL--EFSELREYTHGFFSNIA 574 (992)
Q Consensus 522 ~~~~~~l~~l~~~--~~~~~~~~---~~~~i~~~l~~~l~~--~~~~~r~~~~~~~~~i~ 574 (992)
..+..|+..++.. -++..+.. .++.++..+-.+..+ .+...++-+..++.+++
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 6778888887632 11222322 235555555544332 23445566666665553
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.13 E-value=0.041 Score=51.71 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=102.4
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCC
Q 001945 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG 114 (992)
Q Consensus 35 ~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~ 114 (992)
+.+..+..-|.+++..++|..|+-+|.+. . . .++....++ .-+..+.+..||..++.+++.++....|+
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----~-~~~~L~~ir----~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----K-DKEILIFMR----DEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----T-SHHHHHHHH----HTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----C-cHHHHHHHH----HHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34455666666666779999999877665 2 1 233333333 22455789999999999999998744443
Q ss_pred CCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
..++.+..++.+++..+|..+.....-.+.. ..+......+++++.....| ++.-||++....|..+....
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D-~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKED-VSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhC
Confidence 3788999999999999999998776544432 23455667788888888888 99999999999998877765
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.06 E-value=0.0032 Score=59.08 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=107.0
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHh-hcCCCChhHHHHHHHHHHHhHhhhcHHH
Q 001945 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEI 413 (992)
Q Consensus 335 ~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (992)
.+.+++....+.+++...+|..|+..+++. . ....+++.+.. ...|++..||..+..+++.++....+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH--
Confidence 455666777778888889999999999887 3 12466777776 55699999999999999988863333
Q ss_pred HhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 414 ~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
+..++.+..-..|++..||..|...+.-.+.. ..+....+.+++.+..+..++...||......|..+.+..++
T Consensus 138 ----e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 138 ----KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 23667788888999999999988877643322 223455667788888888888999999999988877765443
No 112
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.74 E-value=0.3 Score=56.51 Aligned_cols=298 Identities=13% Similarity=0.069 Sum_probs=168.5
Q ss_pred HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhccc---CChHHHHHHHHHHHHH
Q 001945 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED---ESDEVKEKSYYALAAF 446 (992)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~---~~~~v~~~a~~~l~~l 446 (992)
+.....+..+.|.++.++...+..+...+..++..++.--+..-.-.++.++..+...|.. .++.-...++.++..+
T Consensus 331 ~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~ 410 (799)
T 1vsy_4 331 FCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRV 410 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 3445567788899999999999999999999999998765411122345566666666665 3344445677788777
Q ss_pred HHhhc--cccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh-cc-----------------------------
Q 001945 447 CEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QA----------------------------- 494 (992)
Q Consensus 447 ~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~----------------------------- 494 (992)
+...- +....++..++..+++.++..|..--..++..++.++...+ .+
T Consensus 411 ~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (799)
T 1vsy_4 411 IRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGE 490 (799)
T ss_dssp HHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccc
Confidence 76552 34567889999999999998888877888888888877543 11
Q ss_pred ----------------------CcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHH
Q 001945 495 ----------------------FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAI 552 (992)
Q Consensus 495 ----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 552 (992)
|..+...++..+..++++.. ++ .+......++..+...+.++.|...+..+.+.+.
T Consensus 491 ~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~-Ee-~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 491 SSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL-ED-SLVTKINQTTMILQESMDDKIFNYFASLLNRNFW 568 (799)
T ss_dssp CSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC-CT-HHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-hH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11222223333444443321 11 1112233445555556666556555555655554
Q ss_pred hccCCCCchhhHHHHHH----HHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhh
Q 001945 553 SGFGLEFSELREYTHGF----FSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHC 628 (992)
Q Consensus 553 ~~l~~~~~~~r~~~~~~----~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (992)
+..... ..+.+... ++.++..-++. +..++|.+...+... ++++ .+......+.
T Consensus 569 ~n~~~~---a~~~v~~L~~~~~~a~~~~~P~~----~~~~~p~l~~~i~~~------i~~g-------a~s~rs~~e~-- 626 (799)
T 1vsy_4 569 SNDSFK---EKDPNYELVTIPLAALVRRNNGL----SKELVRTLLFHIKEQ------IKRG-------AGSVRSTSEI-- 626 (799)
T ss_dssp SCSCCC---SSSCCTHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHH------HHTT-------TTCSCCSSSC--
T ss_pred Hhhhhh---HHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHH------Hhcc-------cccccccccc--
Confidence 433321 22222222 56666665553 445555555443311 0000 0000000000
Q ss_pred hccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhccc-CCChhHHHHHHHHHHHHHHHHH
Q 001945 629 ERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS-YFHEDVRYQAVFALKNILTAAH 701 (992)
Q Consensus 629 ~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~ 701 (992)
.+.. ..-.--+..|+.++...|..+.+|-+++.+.+..++. ..+..+-..+...+..++.+..
T Consensus 627 ~~~D----------~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sLt 690 (799)
T 1vsy_4 627 QQRD----------VKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATLC 690 (799)
T ss_dssp CTTT----------HHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHHH
T ss_pred Ccch----------HHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 0000 0112345677777778888899998888887766553 2333333556666666666554
No 113
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.62 E-value=0.93 Score=47.92 Aligned_cols=352 Identities=13% Similarity=0.139 Sum_probs=171.6
Q ss_pred HhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH------HHHHHHHhhcCCHhHHHHHHHHH
Q 001945 30 LAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK------QSLIESITLEHSAPVRRASANVV 103 (992)
Q Consensus 30 ~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~------~~ll~~l~~~~~~~vr~~~~~~l 103 (992)
+..++.....+++++.+..+..+.++..+++...+...- +.......+. ..++..+.+..++.....++.++
T Consensus 72 l~~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~--~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 72 FKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK--YGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp --CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS--SSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc--chHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 455677888999999988889999999988888775421 1111111100 01333333323455556666666
Q ss_pred HHHHcccCCCCCCcchHHHH------HHhhcC-CCHHHHHHHHHHHHHhhhh--hhhcccc----cHHHHHHHHHHhcCC
Q 001945 104 SIIAKYAVPAGEWPDLLPFL------FQFSQS-EQEEHREVALILFSSLTET--IGQTFRP----HFADMQALLLKCLQD 170 (992)
Q Consensus 104 ~~i~~~~~~~~~~~~ll~~l------~~~l~~-~~~~~~~~al~~l~~l~~~--~~~~~~~----~~~~i~~~l~~~l~~ 170 (992)
+.+.....+ -.+.++.+ ...+.+ ++...+..+..++..+... +-..+-. .++.++.++...+.+
T Consensus 150 ~ll~~~~~~---~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLH---NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTC---CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCc---cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 666532211 12333333 333444 2344566788888877643 2222222 233344444554432
Q ss_pred C------------CChHHHHHHHHHHHHhhcccCChhhHHHHH-hhH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 001945 171 E------------TSNRVRIAALKAIGSFLEFTNDGAEVVKFR-EFI---PSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (992)
Q Consensus 171 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~---~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~ 234 (992)
. ...++...++-|+--+ .+.++ ....+. ..+ +.++..+.. ...+++..-++.+|..++
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~--~~~~l~~~~i~~~~~L~~i~k~---s~KEKvvRv~la~l~Nll 300 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPV--FANELVQKYLSDFLDLLKLVKI---TIKEKVSRLCISIILQCC 300 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHH-TTSHH--HHHHHHTTSHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHH-HcCHH--HHHHHHhcchHHHHHHHHHHHh---hccchhHHHHHHHHHHHh
Confidence 1 1344455555544322 22211 111222 222 333333322 345788888899999998
Q ss_pred cCCccchHHHHH------HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhh-cCChHHHHHHHhhhhccCCCC
Q 001945 235 ESPAPLLGDSVK------SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPLLAESNEA 307 (992)
Q Consensus 235 ~~~~~~~~~~l~------~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~ 307 (992)
+..++.-...+. ..++.+-.+...+..|+++ ...++++....+..-+.... .+|...+.. -..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl-~edl~~L~e~L~~~~~~ltsfDeY~~El~s----G~L----- 370 (480)
T 1ho8_A 301 STRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEEL-RQDISNLKEILENEYQELTSFDEYVAELDS----KLL----- 370 (480)
T ss_dssp SSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHH----TCC-----
T ss_pred cccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHhc----CCc-----
Confidence 876422111122 2333332233333334444 34445554433221111110 112222221 111
Q ss_pred CCCCCCchHHHHHHHHHHHHHHcchh---chHHHHHHHHhhhc------CCChhhHHHHHHHHHHHhhcCHHH--HHHhH
Q 001945 308 GEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQ------NASPKYREAAVTAIGIISEGCAEW--MKEKL 376 (992)
Q Consensus 308 ~~d~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~~l~------~~~~~~r~~al~~l~~i~~~~~~~--~~~~l 376 (992)
+|++......+...=+..+.+. ++-.+...+...-+ +.|...-..||.=+|.++...|.. +...+
T Consensus 371 ----~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l 446 (480)
T 1ho8_A 371 ----CWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT 446 (480)
T ss_dssp ----CCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred ----ccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc
Confidence 2344333333333333333321 22223333321110 235667778888899999876533 22222
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHh
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (992)
..-..++..+.++++.||+.|+.|++.+..
T Consensus 447 -g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 447 -GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp -SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 246788899999999999999999998764
No 114
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.02 E-value=0.46 Score=49.09 Aligned_cols=236 Identities=12% Similarity=0.141 Sum_probs=142.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-C---CcH-----HHHHHHHhc-CCChhHHHHHHHHHHHhhhhcccCCCH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD-P---QVV-----PALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSP 73 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~-p---~~~-----~~l~~il~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~ 73 (992)
-+.+++..+.|+|+..|......|..++.. . .++ ..+.+.+-. .....+-. -.-++...+++.-..+.+
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIae-LLeilgsIinGfa~PLke 208 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAE-LLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHH-HHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHH-HHHHHHHHHcccCCCchH
Confidence 467888888999999999999888776532 1 111 112221111 11111111 112334444444445667
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-hc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QT 152 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~ 152 (992)
+++..+...|+-+.....-..--.+++.|+..+...+.. --..++..++...--.++.....-+.-+..+++..+ ..
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 777777777777666433344446778888887766521 223345555554444455455555666777776654 34
Q ss_pred ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--hhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHH
Q 001945 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEI 229 (992)
Q Consensus 153 ~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~ 229 (992)
+......++..+..|+++ +.-+|..+|+....+ ++....+ .-..++|.+...+.+..... +..++..+..+
T Consensus 287 f~~i~~~lf~~la~ci~S-~hfqVAErAL~~wnNe~i~~li~~-----n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 287 FVKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISD-----NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp HHHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHT-----THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHhccHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 566777788889999999 888998877754311 1111111 12346677777776654333 56788889999
Q ss_pred HHHHhcCCccchHHHHHHH
Q 001945 230 FDELIESPAPLLGDSVKSI 248 (992)
Q Consensus 230 l~~l~~~~~~~~~~~l~~l 248 (992)
+..+.+..+..|+......
T Consensus 361 lk~l~e~d~~lF~~~~~~~ 379 (403)
T 3fga_B 361 LKLFMEMNQKLFDDCTQQF 379 (403)
T ss_dssp HHHHHTTSCCCCCTTHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 9999998888887765443
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.97 E-value=1.3 Score=43.01 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCCh
Q 001945 95 VRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSN 174 (992)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 174 (992)
.+-..-.-+..++....|. .+|++++.++++..+++..+|......+.+.+.... .+...+++.+..++.+ .++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d-~d~ 104 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRD-NSA 104 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC-SCH
T ss_pred HHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC-CCH
Confidence 3333333344444433353 789999999998888888999999999988875433 4677888888888988 899
Q ss_pred HHHHHHHHHHHHhhcc----cC-Chh---hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc--CCc------
Q 001945 175 RVRIAALKAIGSFLEF----TN-DGA---EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE--SPA------ 238 (992)
Q Consensus 175 ~vr~~a~~~l~~l~~~----~~-~~~---~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~--~~~------ 238 (992)
.|.+.++.+..++... .- .+. .....=+.+-.+-..+...+.+++..++..|++.+..++- ..+
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 9999999888777532 11 110 0111111122233333445566788899999988887652 110
Q ss_pred --------------cc-----hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHH
Q 001945 239 --------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQV 296 (992)
Q Consensus 239 --------------~~-----~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~ 296 (992)
++ +..--..++..++....++..+...-..++..|..+++.+|. ++..+++.
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~------~~~rIl~a 255 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPI------FMGAVVEA 255 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGG------GHHHHHHH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcH------HHHHHHHh
Confidence 01 122233467777776666555554555667777788876665 44445554
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.77 E-value=2.2 Score=44.10 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChH
Q 001945 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR 175 (992)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 175 (992)
+-..-.-+.+++-+..| .-.+++++.++++..+++..+|..+..++.+.+... .++...+++.+..++.+ .++.
T Consensus 42 Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d-~d~~ 115 (386)
T 3o2t_A 42 KITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRD-ENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTC-SSHH
T ss_pred HHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcC-CCHH
Confidence 33333344444333335 378999999999999999999999999999887543 34567888888888888 8999
Q ss_pred HHHHHHHHHHHhhcc----c---CC-h----hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc--CC----
Q 001945 176 VRIAALKAIGSFLEF----T---ND-G----AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE--SP---- 237 (992)
Q Consensus 176 vr~~a~~~l~~l~~~----~---~~-~----~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~--~~---- 237 (992)
|.+.++.|..++... . +. . ..|..+. .+-..+...+.+++..++..|++.+..++- ..
T Consensus 116 V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~----~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d 191 (386)
T 3o2t_A 116 VVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS----AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMAD 191 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH----HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH----HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence 999999888776521 1 11 0 1122222 222333344566778889899988887652 10
Q ss_pred c-------------------cc-----hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHH
Q 001945 238 A-------------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (992)
Q Consensus 238 ~-------------------~~-----~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i 293 (992)
+ ++ +..--..+++.++.++..+..+.-.-..++..|..+++..|. |+..+
T Consensus 192 ~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~------~~~rI 265 (386)
T 3o2t_A 192 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM------FMSEV 265 (386)
T ss_dssp CCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG------GHHHH
T ss_pred cccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH------HHHHH
Confidence 0 01 112223477777777776555554445567777777776554 55567
Q ss_pred HHHHhhh
Q 001945 294 LQVMCPL 300 (992)
Q Consensus 294 l~~l~~~ 300 (992)
++.+..+
T Consensus 266 l~aL~~l 272 (386)
T 3o2t_A 266 IQAYETL 272 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7766544
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.62 E-value=0.5 Score=43.32 Aligned_cols=163 Identities=13% Similarity=0.185 Sum_probs=99.5
Q ss_pred HHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC------ChHHHHHHHHHH
Q 001945 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE------SDEVKEKSYYAL 443 (992)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~------~~~v~~~a~~~l 443 (992)
++...+++.+...+.. ..|.+|+..|.. + +-+++++|.+...+.+. +...-.......
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~aL~sL~~---D------~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIAIECLEK---E------SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHHHHHHHH---C------SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHhc---C------CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3445566666666655 357777666542 2 12233444444333221 334445556666
Q ss_pred HHHHHhhccccccchHHHHHHHHHHhcCC---CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhhhHh
Q 001945 444 AAFCEDMGEEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS 520 (992)
Q Consensus 444 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 520 (992)
..++.+-.-.+.||+..+++.++.++-.. ...+|+.|...++.++...+.......+.++..+.+.+.+.+.+-
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l--- 147 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSE--- 147 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCH---
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCCh---
Confidence 66666666678899999999999997543 237999999999999999988776667788888888775433221
Q ss_pred HHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 001945 521 RARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (992)
Q Consensus 521 ~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (992)
..-..++..+. .+|++.+...+-+-++...+
T Consensus 148 -~t~YGAi~GL~-~lG~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 148 -DSQYGALYCLS-ILSKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp -HHHHHHHHHHH-HHCHHHHHTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-HhHHHHHHHhhhcCHHHHHH
Confidence 12334444443 55665555444333343333
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.45 E-value=2.1 Score=41.60 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhh
Q 001945 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (992)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~ 151 (992)
+++....+...+++. ..+++..+|+.++..+....+.. + ..-+..++.+..++.+.++.+...+..+...+....-.
T Consensus 47 dp~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k-~-~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 47 CAELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVK-V-ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp TGGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHC-G-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666663 34577778888888777776543 2 24566677777777777777766666666655433110
Q ss_pred c----------ccccH---HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCC--hh--------------------h
Q 001945 152 T----------FRPHF---ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND--GA--------------------E 196 (992)
Q Consensus 152 ~----------~~~~~---~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~--------------------~ 196 (992)
. ....| ..+-..+.....+ .+..||..+++.+..++..... .. .
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s-~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~ 202 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDN-ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFR 202 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSC
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCC
Confidence 0 11222 3344556666666 7899999999999887632210 00 0
Q ss_pred HHHHHhhHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHhcCCccchHHHHH
Q 001945 197 VVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDELIESPAPLLGDSVK 246 (992)
Q Consensus 197 ~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 246 (992)
...+..--..++..+...+.+. ..-....++.+|..+++..|.++...++
T Consensus 203 ~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~ 254 (257)
T 3gs3_A 203 REKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVE 254 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 0011111122333333333332 2334667888888888888877666554
No 119
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=95.43 E-value=0.3 Score=51.45 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=134.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CC---cH-----HHHHHHHhc-CCChhHHHHHHHHHHHhhhhcccCCCH
Q 001945 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD-PQ---VV-----PALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSP 73 (992)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~-p~---~~-----~~l~~il~~-~~~~~~r~~a~~~l~~~i~~~~~~~~~ 73 (992)
.+.+++..+.|+|+..|......|..++.. .+ ++ ..+.+.+-. .....+- -..-++...+...-..+.+
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIa-eLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHH-HHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH-HHHHHHHHHHhccCCCCcH
Confidence 467888888999999999999988777643 12 11 111222211 1111111 1122333444444345667
Q ss_pred HHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhh-hc
Q 001945 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QT 152 (992)
Q Consensus 74 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~-~~ 152 (992)
+++..+...|+.+.....-..--.+++.|+..+...+.. --..++..++...--.+......-+.-+..+++..+ ..
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~e 319 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 319 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHH
Confidence 777777777777666433344445777787777765421 223344445444433444444455666666766554 34
Q ss_pred ccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHH--hhcccCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHH
Q 001945 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEI 229 (992)
Q Consensus 153 ~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~ 229 (992)
+......++..+..|+++ +.-+|...|+....+ ++....+. -..++|.++..+.+..... +..++..+..+
T Consensus 320 f~~i~~~lF~~la~ci~S-~hfqVAErAL~~w~N~~i~~li~~n-----~~~IlPii~p~L~~~s~~HWn~~V~~la~~v 393 (449)
T 2npp_B 320 FVKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 393 (449)
T ss_dssp HHHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHCCHHHHHHHHhc-----hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 566777788999999999 999998887754321 11111111 1334566666554432222 44678888888
Q ss_pred HHHHhcCCccchHHHH
Q 001945 230 FDELIESPAPLLGDSV 245 (992)
Q Consensus 230 l~~l~~~~~~~~~~~l 245 (992)
+..+.+..+..++...
T Consensus 394 lk~l~e~d~~lf~~c~ 409 (449)
T 2npp_B 394 LKLFMEMNQKLFDDCT 409 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHH
Confidence 8888887777665544
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.40 E-value=0.39 Score=44.03 Aligned_cols=138 Identities=14% Similarity=0.268 Sum_probs=87.4
Q ss_pred cHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cccccchHHHHHH-HHHHhcCCCHhHHHHHHHHHHHH
Q 001945 410 QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGK-LLAALENSPRNLQETCMSAIGSV 487 (992)
Q Consensus 410 ~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~-l~~~l~~~~~~v~~~a~~~l~~l 487 (992)
..+.+.|++.+...+.. ..|..|...|. ...+ ..+.||+-..+.. ....+. +...-...+....++
T Consensus 6 S~Elq~yf~~It~a~~~-------~~r~~aL~sL~---~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~AL 73 (196)
T 4atg_A 6 PKELQLYFDKILSMIKS-------DMKDIAIECLE---KESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSL 73 (196)
T ss_dssp CHHHHHHHHHHHHHHTS-------TTHHHHHHHHH---HCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-------HHHHHHHHHHh---cCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHH
Confidence 44566777777777766 23555444443 3322 2344554433332 222222 455555666666666
Q ss_pred HHHhhccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCc
Q 001945 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS 560 (992)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 560 (992)
...-.-.+.||..+++|.+..++-...-....+|..|-.+++.+++..|. .....-+.++..+.+.+.+++.
T Consensus 74 l~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 74 IKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSR-SYKTLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHTCTTS
T ss_pred HcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCc-cCchHHHHHHHHHHHHHcCCCC
Confidence 66555678899999999998888654222227899999999999998875 4444556788888888776543
No 121
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.02 E-value=2.4 Score=42.26 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=91.1
Q ss_pred cCChHHHHHHHHhccCCCCchhhH-HHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCC
Q 001945 541 EPILPPFVEAAISGFGLEFSELRE-YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGG 619 (992)
Q Consensus 541 ~~~~~~i~~~l~~~l~~~~~~~r~-~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (992)
...++++++.++...++..|+.|+ .++.+++.++..++..+.+++|.|+..++.+.= ..++.+
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL------~MI~~d---------- 131 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL------NMINKD---------- 131 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH------HHHSST----------
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHhcc----------
Confidence 345678888777777766777876 478899999999999999999999999875421 001000
Q ss_pred CCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 001945 620 VSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FLEESLKILVRHASYFHEDVRYQAVFALKN 695 (992)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~ 695 (992)
. ....+-|..=...|..+..++-..+.. .+..+++.++..+.+.+.+|-..+...+..
T Consensus 132 ----f--------------~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 132 ----F--------------EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp ----T--------------TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----c--------------ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 0 012245677777788777776554332 356777788888889999999999999988
Q ss_pred HHHHHH
Q 001945 696 ILTAAH 701 (992)
Q Consensus 696 l~~~~~ 701 (992)
++..+.
T Consensus 194 ll~n~~ 199 (321)
T 1w9c_A 194 LLQNVA 199 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
No 122
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.00 E-value=6.6 Score=40.65 Aligned_cols=216 Identities=8% Similarity=0.007 Sum_probs=125.9
Q ss_pred CCChhhHHHHHHHHHHHhhcC---HHHHHHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHH-H
Q 001945 348 NASPKYREAAVTAIGIISEGC---AEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL-P 422 (992)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~---~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll-~ 422 (992)
++.|..-......+..+.+.. +.....+++ ..+-.++..++.++++=|......|.++-..+.. ...++...+ .
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~inn 173 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINN 173 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 357887777777776666542 333334443 3567788899999999999998888887665532 233333222 2
Q ss_pred HHHHhcccCC-hHHHHHHHHHHHHHHHhhccccc-cchHHHHHHHHHHhcCCC-HhHHHHHHHHHHHHHHHhhccCcccH
Q 001945 423 CILNALEDES-DEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPYA 499 (992)
Q Consensus 423 ~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~ 499 (992)
.+...+-... ..--...+..+++++..+...+. .+..-+...|+++-.... .....+...|+...+..-+. ..
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~----L~ 249 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LT 249 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG----GH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch----hH
Confidence 2233222221 12234577788888887754443 233344555555544433 22234445555555544332 22
Q ss_pred HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHH
Q 001945 500 ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (992)
Q Consensus 500 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~ 571 (992)
..++..+.+....++.. ..+ .-+.-+..+...++++.|.+...+++..+..++.+++..+-+.|+..|.
T Consensus 250 ~~vi~~LLk~WP~tns~-Kev--lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 250 EPVVMALLKYWPKTHSP-KEV--MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHHHHTCCSSCHH-HHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCCCCcH-HHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 33333343333333221 111 2345555666667778888888999999999999999899888887773
No 123
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.88 E-value=1.5 Score=39.50 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=75.4
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~ 422 (992)
.+.++||..-..-+..+..-.. .-...+..|.+.++++++.|+..|+..|..+.+.++..+...+ ..++.
T Consensus 25 ~l~~~Dw~~ileicD~I~~~~~--------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 25 SNRQEDWEYIIGFCDQINKELE--------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp TCSSCCHHHHHHHHHHHHHSTT--------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCc--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 3556788654433333322111 1235677888889999999999999999999999887665432 45677
Q ss_pred HHHHhccc------CChHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Q 001945 423 CILNALED------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (992)
Q Consensus 423 ~l~~~l~~------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~ 466 (992)
.+...+.. .+..|+..++..+......++. .|.+..+...|.
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~--~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE--EAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHH
Confidence 77776652 3578999999999998887754 233444444443
No 124
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=92.51 E-value=6.5 Score=39.25 Aligned_cols=132 Identities=16% Similarity=0.212 Sum_probs=86.0
Q ss_pred hHHHHHHHHhCCChH----HHHHHHHHHHHHhhcCC--CCccchhhHHHHHHHHHhhcCCchh----hcHhhhHHHHHHh
Q 001945 805 DLLPAFAKSMGPHFA----PIFAKLFDPLMKFAKSS--RPLQDRTMVVATLAEVARDMGSPIA----AYVDRVMPLVLKE 874 (992)
Q Consensus 805 ~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~--~~~~~r~~al~~l~~~~~~~~~~~~----~~~~~~~~~ll~~ 874 (992)
.++.++++.+|+.+. .+++.++...+.+++++ +.++.|..-+..|..+..++-.... +....++..++=+
T Consensus 96 ~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa 175 (321)
T 1w9c_A 96 STMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWA 175 (321)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555444 45555566667777753 2356898999999999888765432 2456777778878
Q ss_pred cCCCChHhHHHHHHHHHHHHhhcC--cc-----hhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHH
Q 001945 875 LASPDAMNRRNAAFCVGELCKNGG--ES-----ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMI 937 (992)
Q Consensus 875 l~~~~~~vr~~a~~~l~~l~~~~~--~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~ 937 (992)
++++.++|-+.+...+-.+..+.. +. +..|+..+++-+..++.|+......+. -+..|.+++
T Consensus 176 ~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~-q~~iL~~lf 244 (321)
T 1w9c_A 176 FKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTM-HASILAYMF 244 (321)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHH-HHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHH-HHHHHHHHH
Confidence 999999999999988888876553 22 245677777777777777654333322 234555554
No 125
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=92.17 E-value=7.8 Score=39.95 Aligned_cols=217 Identities=8% Similarity=0.010 Sum_probs=125.2
Q ss_pred cCCChhhHHHHHHHHHHHhhc--C-HHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHH-
Q 001945 347 QNASPKYREAAVTAIGIISEG--C-AEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL- 421 (992)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~--~-~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll- 421 (992)
.++.|..-......+-.+.+. . +.....++ ...+-.++..++.++++=|......|.++-..+.. ...++...+
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~ 217 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQIN 217 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 356788777777777666653 2 23233333 34677888889999999999998888777655422 223332222
Q ss_pred HHHHHhcccCC-hHHHHHHHHHHHHHHHhhcccccc-chHHHHHHHHHHhcCCC-HhHHHHHHHHHHHHHHHhhccCccc
Q 001945 422 PCILNALEDES-DEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPY 498 (992)
Q Consensus 422 ~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~ 498 (992)
..+.+.+-... ..--...+..+++++..+...+.+ +..-+...|+++..... .....+...|+...+..-+. .
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L 293 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----L 293 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG----G
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch----h
Confidence 23333333221 222345677788888877543433 23334444555544322 11223444454444443222 2
Q ss_pred HHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHH
Q 001945 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (992)
Q Consensus 499 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~ 571 (992)
...++..+.+....++... .+ .-+.-+..+...++++.|.+...+++..+.+++++++..+-+.|+..|.
T Consensus 294 ~~~vi~~LLk~WP~tns~K-ev--lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 294 TEPVVMALLKYWPKTHSPK-EV--MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHSSCSSCCTT-HH--HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCCCCchH-HH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 2333444444433332221 11 2355566666777888899999999999999999999899888887764
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.08 E-value=1.8 Score=37.55 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccc-
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI- 454 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~- 454 (992)
..+..|.+.+.+.++.++..|+..|..+.+.++..+...+ ..++..+...+...++.|+..+...+......++..-
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5677888888999999999999999999999987765322 4455555555556678999999999998888775431
Q ss_pred ccchHHHHHHH
Q 001945 455 LPFLDPLMGKL 465 (992)
Q Consensus 455 ~~~~~~l~~~l 465 (992)
.+++..+...|
T Consensus 122 l~~i~~~Y~~L 132 (140)
T 3ldz_A 122 LSLISAMIKNL 132 (140)
T ss_dssp GTHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 23344444444
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.29 E-value=15 Score=37.94 Aligned_cols=171 Identities=12% Similarity=0.118 Sum_probs=114.1
Q ss_pred hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc-
Q 001945 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ- 410 (992)
Q Consensus 332 ~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~- 410 (992)
..+++.+++.+.++..+++..+|......++..+..- ...+..+++.+...+.|+++.|...++.+.+.+....-
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888778888888889988887777666432 23467788888888899999999998888877653210
Q ss_pred ------------HHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc------------------ccc---cc
Q 001945 411 ------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE------------------EIL---PF 457 (992)
Q Consensus 411 ------------~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~------------------~~~---~~ 457 (992)
...-+.+..+-..++..+...+..||..|++++..++-.... .+. |+
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 122234455566777777778899999999999998853310 000 11
Q ss_pred ---------hHHHHHHHHHHhcCC--CHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Q 001945 458 ---------LDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (992)
Q Consensus 458 ---------~~~l~~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 510 (992)
...+++.|+..+..+ ..-.-..++.+++.++..=+ .|++.+++.+..+-
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP----~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP----MFMSEVIQAYETLH 273 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHhhc
Confidence 337778888888763 23333455666666665432 36677788776543
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.40 E-value=2.9 Score=36.57 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccc------CChHHHHHHHHHHHHHHHh
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED------ESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~------~~~~v~~~a~~~l~~l~~~ 449 (992)
..+..|.+.+.++++.++..|+..|..+.+.++..+...+ ..++..+.+.+.+ .++.|+..+...+......
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999988765432 5667777777753 4678999999999998887
Q ss_pred hcc
Q 001945 450 MGE 452 (992)
Q Consensus 450 ~~~ 452 (992)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 754
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.11 E-value=18 Score=43.87 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHHHHHc-------chhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhh
Q 001945 314 APDRAAAEVIDTMALNL-------AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (992)
Q Consensus 314 ~~~~~a~~~l~~l~~~~-------~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~ 386 (992)
..+..+.-+++.+.... +.+.++.+...+.+.+...+...+..++.+||.+... ..++.+.++
T Consensus 410 ~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~ 479 (1056)
T 1lsh_A 410 ILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRF 479 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHh
Confidence 34556666666665543 2355677888887788888888899999999998864 223334444
Q ss_pred cC-------CCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcc--cCChHHHHHHHHHHHHHHHhhccccccc
Q 001945 387 LR-------DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE--DESDEVKEKSYYALAAFCEDMGEEILPF 457 (992)
Q Consensus 387 l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 457 (992)
+. +...+||.+|+++|..+....+.. +-+.+++... ..++++|..|+..|-. ..|.
T Consensus 480 l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~P~----- 544 (1056)
T 1lsh_A 480 LPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFE---SKPS----- 544 (1056)
T ss_dssp STTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHH---TCCC-----
T ss_pred hcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHHHHHHHHH---HCcC-----
Confidence 32 235689999999999998654322 3344555553 3457899888877642 2222
Q ss_pred hHHHHHHHHHHhcC-CCHhHHHHHHHHHHHHH
Q 001945 458 LDPLMGKLLAALEN-SPRNLQETCMSAIGSVA 488 (992)
Q Consensus 458 ~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~ 488 (992)
..+++.+...+.. ++..|+......|.+++
T Consensus 545 -~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 545 -VALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 1234444444443 56666666655555444
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.10 E-value=4.1 Score=36.33 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=58.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccc-CChHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
..+..|.+.+.+.++.|+..|+..|..+...++..+...+ ..++..+...+.. .++.|+..+...+......++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5677888888999999999999999999999987765322 3455655555543 4579999999999888887764
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.08 E-value=6.5 Score=34.32 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=61.2
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhccc------CChHHHHHHHHHHHHHHHh
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED------ESDEVKEKSYYALAAFCED 449 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~~------~~~~v~~~a~~~l~~l~~~ 449 (992)
..+..|.+.++++++.++..|+..|..+...++..+...+ ..++..+...+.. .+..|+..++..+......
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999988775433 5677778777764 3578999999999988877
Q ss_pred hcc
Q 001945 450 MGE 452 (992)
Q Consensus 450 ~~~ 452 (992)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.86 E-value=14 Score=37.10 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=96.0
Q ss_pred hhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhH-HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH--HHHhhhhhH
Q 001945 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYESV 420 (992)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l 420 (992)
+.+.+.+.+.+.-+++.|..+...-.+...+++ ..-+..++....+.+...+.-++.+++++..+... .+.. .+..
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~f 203 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDT 203 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-CHHH
Confidence 445566777888888888884432111222221 12355556666667888999999999998876321 1112 3567
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH-----------HHHHHHHHHhc---CCCHhHHHHHHHHHHH
Q 001945 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-----------PLMGKLLAALE---NSPRNLQETCMSAIGS 486 (992)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-----------~l~~~l~~~l~---~~~~~v~~~a~~~l~~ 486 (992)
+..+...+......|...|...|..++...+....-+.. ..++.++..++ ..+..++..++..+..
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 777888888777889899999999998876422111111 11446666776 5688889898888887
Q ss_pred HHHHhh
Q 001945 487 VAAAAE 492 (992)
Q Consensus 487 l~~~~~ 492 (992)
+...++
T Consensus 284 lL~~ap 289 (339)
T 3dad_A 284 TLAALP 289 (339)
T ss_dssp HHHHCS
T ss_pred HHhcCC
Confidence 776654
No 133
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.99 E-value=0.15 Score=49.36 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHH
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll 421 (992)
+...+++++|.+|.++...++ -+.+...++|+++.||..+...+ +.
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l-------~~---------- 196 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL-------RG---------- 196 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-------CG----------
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-------CH----------
Confidence 345678999999998876511 13445677899999999888652 11
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 001945 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (992)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~ 485 (992)
+.+...+.|+++.||..+...+. .+.+..+ .++++.||..+.+.+|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 34556688999999998888754 1344444 8889999998876654
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.95 E-value=2.9 Score=36.16 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc--hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
..+..+.+.+...++.++..|+..|..++++|+..+... -..+++.+..++...+..|+..+++.+..-+...++
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 466777778888899999999999999999998654421 134444455555557889999999998888777664
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.90 E-value=5.5 Score=35.82 Aligned_cols=76 Identities=8% Similarity=0.099 Sum_probs=57.8
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHhc------CCCHhHHHHHHHHHHHHHH
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP--FLDPLMGKLLAALE------NSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~------~~~~~v~~~a~~~l~~l~~ 489 (992)
...+..+.+.+++.++.++..|+..|..++++|+..+.. --..+++.|..++. ..+..|+..+++.+-.-..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 346777888889999999999999999999999865542 12345666666664 2468899999999888887
Q ss_pred Hhhc
Q 001945 490 AAEQ 493 (992)
Q Consensus 490 ~~~~ 493 (992)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7654
No 136
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=87.38 E-value=4.9 Score=38.24 Aligned_cols=110 Identities=14% Similarity=0.243 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHhhcCCchhhcH--hhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCc-c----hhhH---HHHHHH
Q 001945 841 DRTMVVATLAEVARDMGSPIAAYV--DRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGE-S----ALKY---YGDILR 910 (992)
Q Consensus 841 ~r~~al~~l~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~-~----~~~~---~~~~l~ 910 (992)
.|..++|++|.+++.-...+..|+ ..++|..++.+...+.--|..|++-+.++...... . .... +..++.
T Consensus 118 LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~ 197 (268)
T 2fv2_A 118 LRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILG 197 (268)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHH
Confidence 688999999999987555566663 67999999999999988999999999998754321 0 1112 233343
Q ss_pred hhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCCChhhHHHHHHhhCC
Q 001945 911 GLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLP 958 (992)
Q Consensus 911 ~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~~~~~~l~~~l~~lp 958 (992)
.+..-+. ......+..+++.|.-|+..+ ++....+-+.||
T Consensus 198 ~mV~~l~-~~ps~RLLKhiircYlRLsdn-------~rar~aL~~~LP 237 (268)
T 2fv2_A 198 KMVLQLS-KEPSARLLKHVVRCYLRLSDN-------PRAREALRQCLP 237 (268)
T ss_dssp HHHHHTT-TSCCHHHHHHHHHHHHHHTTS-------HHHHHHHHHHSC
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHHhcC-------HHHHHHHHHhCc
Confidence 3333222 233456777888888776654 344444444555
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.24 E-value=4.1 Score=35.57 Aligned_cols=75 Identities=5% Similarity=0.069 Sum_probs=57.8
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHhcC------CCHhHHHHHHHHHHHHHHH
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP--FLDPLMGKLLAALEN------SPRNLQETCMSAIGSVAAA 490 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~------~~~~v~~~a~~~l~~l~~~ 490 (992)
..+..+.+.+++.++.++..|+..|..++++|+..+.. --..+++.|..++.. .+..|+..+++.+..-+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46677788888899999999999999999999865532 123556666666653 5788999999999888877
Q ss_pred hhc
Q 001945 491 AEQ 493 (992)
Q Consensus 491 ~~~ 493 (992)
+++
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 654
No 138
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=84.78 E-value=34 Score=34.24 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=88.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHH-HHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhh
Q 001945 125 QFSQSEQEEHREVALILFSSLTETIGQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREF 203 (992)
Q Consensus 125 ~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 203 (992)
+-+.+++...+..++.-|..++..-.+...+++. +=+..+.+.... .+......++.++..++.+.. ......+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v~---Gm~gvvs- 199 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFVD---GMLGVVA- 199 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSHH---HHHHHHH-
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhccc---cccchhC-
Confidence 3344445555666666666644322211112211 235566677777 789999999999999998752 1211111
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHHHH-----------HHHHHHHhhC-CCCChHHHHHHHH
Q 001945 204 IPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSI-----------VHFSLEVSSS-HNLEPNTRHQAIQ 271 (992)
Q Consensus 204 ~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l-----------i~~~~~~~~~-~~~~~~~r~~a~~ 271 (992)
-|.++..+...+.+.+..+...+++.|..++...+.........+ ++.++..+.. +..+.++...++.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 266777777777777788888899998888877644333222211 2233334431 2236777777777
Q ss_pred HHHHHHHh
Q 001945 272 IISWLAKY 279 (992)
Q Consensus 272 ~l~~l~~~ 279 (992)
++..+...
T Consensus 280 LIN~lL~~ 287 (339)
T 3dad_A 280 LINKTLAA 287 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77655543
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.00 E-value=5.9 Score=34.56 Aligned_cols=76 Identities=8% Similarity=0.047 Sum_probs=58.8
Q ss_pred hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccc--hHHHHHHHHHHhcC------CCHhHHHHHHHHHHHHHH
Q 001945 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALEN------SPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 418 ~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~------~~~~v~~~a~~~l~~l~~ 489 (992)
...+..+.+.+++.++.++..|+..|..++++|+..+... -..+++.|..++.. .+..|+..+++.+..-+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3466777788889999999999999999999998765422 24667777777753 478899999998888777
Q ss_pred Hhhc
Q 001945 490 AAEQ 493 (992)
Q Consensus 490 ~~~~ 493 (992)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 6543
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.93 E-value=12 Score=35.43 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
..+..|.+.+.++++.++..|+..|..+.+..+..+...+ ..++..+...+. ..++.|+..+...+......++.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 5677888888999999999999999999999887654322 344444444443 34578999999999988887754
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=83.67 E-value=16 Score=32.27 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=57.3
Q ss_pred HHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHH-HHHhcc---cCChHHHHHHHHHHHHHHHhh
Q 001945 378 SVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC-ILNALE---DESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 378 ~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~-l~~~l~---~~~~~v~~~a~~~l~~l~~~~ 450 (992)
..+..|.+.++ .+++.++..|+..|..+.+.+++.+...+ ..++.. +.+.+. ++...|+..+...+......+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 56777888887 58999999999999999999988766533 456665 555553 334689999999998888877
Q ss_pred cc
Q 001945 451 GE 452 (992)
Q Consensus 451 ~~ 452 (992)
+.
T Consensus 133 ~~ 134 (157)
T 1elk_A 133 RS 134 (157)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=83.64 E-value=6.9 Score=33.48 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=63.3
Q ss_pred CCCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhc--
Q 001945 310 DDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-- 387 (992)
Q Consensus 310 d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-- 387 (992)
+++|.+.....+-+..+........+..+++++...+++.+|.++.-||..|..++....+.+...+..=...|-.+.
T Consensus 22 ~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F 101 (140)
T 1vdy_A 22 DEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHY 101 (140)
T ss_dssp SCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTC
T ss_pred CCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhc
Confidence 345665555555555555555445668899999999999999999999999999987655444433322222222221
Q ss_pred ---CC------CChhHHHHHHHHHHHhHh
Q 001945 388 ---RD------PEQFVRGAASFALGQFAE 407 (992)
Q Consensus 388 ---~d------~~~~vr~~a~~~l~~l~~ 407 (992)
.| +...||..|-.++..+..
T Consensus 102 ~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 102 KGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp CCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 12 236799888877776643
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.49 E-value=6.5 Score=35.00 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=55.0
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHhcC-CCHhHHHHHHHHHHHHHHHhhc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQ 493 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~ 493 (992)
..+..+.+.+...++.++..|+..|..++++|+..+...+ ..+++.+..++.. .+..|+..+++.+-.-...++.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4666777788888999999999999999999986544211 2344445555544 5789999999988877776654
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=83.33 E-value=49 Score=34.90 Aligned_cols=80 Identities=11% Similarity=0.236 Sum_probs=51.0
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HhcCCccchHHHHHHHHHHHHHHh-h--CCCCChHHHHHHHHHH
Q 001945 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE--LIESPAPLLGDSVKSIVHFSLEVS-S--SHNLEPNTRHQAIQII 273 (992)
Q Consensus 199 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~--l~~~~~~~~~~~l~~li~~~~~~~-~--~~~~~~~~r~~a~~~l 273 (992)
.+......++..+.+++++.+..++..|+..+.. ++. .+......+++.++..+ . ..+....+|..+..++
T Consensus 319 ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~----li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vl 394 (449)
T 2npp_B 319 EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMS----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 394 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHH----HHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHH----HHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3667778888889999999988998888766532 111 12223334445444432 2 2234678888888888
Q ss_pred HHHHHhhHh
Q 001945 274 SWLAKYKYN 282 (992)
Q Consensus 274 ~~l~~~~~~ 282 (992)
..+.+..+.
T Consensus 395 k~l~e~d~~ 403 (449)
T 2npp_B 395 KLFMEMNQK 403 (449)
T ss_dssp HHHHTTCHH
T ss_pred HHHHHHCHH
Confidence 877765554
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=83.12 E-value=51 Score=34.95 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHhhhh--hHHHHHHHhcccCChHHHHHHHHHHHHHHH
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALEDESDEVKEKSYYALAAFCE 448 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~ 448 (992)
.++.+-..||.=+|.+++..+.. ...+. +.-..+++.+.++++.||..|+.|+..++.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46888899999999999988542 22221 346778889999999999999999998764
No 146
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.89 E-value=90 Score=37.82 Aligned_cols=174 Identities=12% Similarity=0.115 Sum_probs=99.3
Q ss_pred CcHHHHHHHHhcC---CChhHHHHHHHHHHHhhhhcc---cCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHc
Q 001945 35 QVVPALVQHLRTA---KTPNVRQLAAVLLRKKITGHW---AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (992)
Q Consensus 35 ~~~~~l~~il~~~---~~~~~r~~a~~~l~~~i~~~~---~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~ 108 (992)
+.+..+..++.+. .++.+|+.+...+-..+.+.. ...+++....+.+.+.+.+.. .+..-+..+..+|+.+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC
Confidence 3566666666432 356777777776666665433 234556677777777777774 456666677777777653
Q ss_pred ccCCCCCCcchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCC-CCChHHHHHH
Q 001945 109 YAVPAGEWPDLLPFLFQFSQS-------EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD-ETSNRVRIAA 180 (992)
Q Consensus 109 ~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~vr~~a 180 (992)
|..++.+..++.. ....+|..|+.+|..+....+ ..+.+.+.+...+ ..++++|.+|
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-------~~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-------HHHHHHHHHHhcCCCCChHHHHHH
Confidence 3456666666532 124567778888887764433 2334444555432 2678899888
Q ss_pred HHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcCCc
Q 001945 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA-SGEEDVAVIAFEIFDELIESPA 238 (992)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~ 238 (992)
+..|.. ..++ ..+++.+...+. +.+..++.-....|..+++...
T Consensus 535 ~~~Lm~---t~P~-----------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 535 CIVFFE---SKPS-----------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHH---TCCC-----------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHH---HCcC-----------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 887643 2222 112333333333 3455666555555666555443
No 147
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=80.44 E-value=56 Score=33.71 Aligned_cols=210 Identities=14% Similarity=0.137 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHh--c-ccccchH-HHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 001945 646 AAATQALGLFALHT--K-SSYAPFL-EESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTV 721 (992)
Q Consensus 646 ~~a~~~l~~~~~~~--~-~~~~~~~-~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (992)
......+..+..+. . .....|+ .+.+..++.++++.++.-|..-...|.++...+.+ ...++...
T Consensus 147 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-----------~R~~Irk~ 215 (392)
T 2jak_A 147 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-----------LRAYIRKQ 215 (392)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-----------GHHHHHHH
T ss_pred HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 44556666665442 1 1123343 34667777888888888887766666666543221 12233222
Q ss_pred H-HHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHH
Q 001945 722 M-NIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIM 800 (992)
Q Consensus 722 ~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (992)
+ ..+.+.+.+.....-+.++++.++.++.-+....-.++..-+...++++...+.- .....
T Consensus 216 i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l---------------~~y~~--- 277 (392)
T 2jak_A 216 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSL---------------SVYHP--- 277 (392)
T ss_dssp HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGG---------------GGTHH---
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcH---------------HHhHH---
Confidence 2 2233333443344456788899999988665332233333344445555443321 11222
Q ss_pred HHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCc-hhhcHhhhHHHHHHhcCCCC
Q 001945 801 DAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSP-IAAYVDRVMPLVLKELASPD 879 (992)
Q Consensus 801 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~ 879 (992)
..+.|+..+++.-+. ....++..+++..-..++. .-..-+.-+.++++..++. .......+...+.+++++++
T Consensus 278 -qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~-KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~h 351 (392)
T 2jak_A 278 -QLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSP-KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH 351 (392)
T ss_dssp -HHHHHHHHHHHHCGG----GHHHHHHHHHHSSCSSCCT-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred -HHHHHHHHHHhcCch----hHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 344555555544222 2334555566665444442 3456778888888877654 44456777777888888998
Q ss_pred hHhHHHHHHHH
Q 001945 880 AMNRRNAAFCV 890 (992)
Q Consensus 880 ~~vr~~a~~~l 890 (992)
..|-+.|++.+
T Consensus 352 fqVAErAL~~w 362 (392)
T 2jak_A 352 FQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 88877776543
No 148
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=80.19 E-value=0.62 Score=45.10 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHH
Q 001945 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (992)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll 421 (992)
+...+++++|.+|.++...+ + .+.+...+.|+++.||..+...++ .
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~ 220 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS-----------------L 220 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC-----------------H
T ss_pred HHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC-----------------H
Confidence 33567899999999888653 0 145677788999999999887754 1
Q ss_pred HHHHHhcccCChHHHHHHHHHH
Q 001945 422 PCILNALEDESDEVKEKSYYAL 443 (992)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~~l 443 (992)
+.+ ..|.|+++.||..+...|
T Consensus 221 ~~L-~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 221 EAL-RELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHH-HHCCCCCHHHHHHHHCCC
T ss_pred HHH-HHccCCCHHHHHHHHHHh
Confidence 233 334888899998876544
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.55 E-value=7.1 Score=33.43 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=63.8
Q ss_pred HhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHH
Q 001945 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP 422 (992)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~ 422 (992)
.+..++.+|.---..+.-++.+..... ......|++.|.+.|++.++.++..|+.+|..++..-.+.+...+..=..
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~---~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSH---VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 445566666544333333443333221 12346899999999999999999999999999998777666554322222
Q ss_pred HHHHh-----cccC------ChHHHHHHHHHHHHHHH
Q 001945 423 CILNA-----LEDE------SDEVKEKSYYALAAFCE 448 (992)
Q Consensus 423 ~l~~~-----l~~~------~~~v~~~a~~~l~~l~~ 448 (992)
.+-.+ ..|+ ...||..|-.++..+..
T Consensus 94 ~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 94 AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 22211 1122 14688888777776643
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.94 E-value=25 Score=33.27 Aligned_cols=75 Identities=8% Similarity=0.112 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHHHHHHHhcc-cCChHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
..+..|.+.+.++++.++..|+..|..+....+..+...+ ..++..+...+. ..+..|+..+...+......+..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5677788888999999999999999999999877654322 335555555444 34578999999888888877653
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.42 E-value=30 Score=30.48 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhc-CCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHH-HHHHHhccChhhhHhHHHHHHHHHHHHH
Q 001945 458 LDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL-LKIFMVLTNDEDLRSRARATELLGLVAE 533 (992)
Q Consensus 458 ~~~l~~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~-l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (992)
....+..+.+.++ ..++.++..|+..+..++..+|..|-.-+ ..++.. +.+.+....+....+|.++++.+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3466777888887 47889999999999999999887665422 335554 5555543333345678889999988887
Q ss_pred hhch
Q 001945 534 SVGR 537 (992)
Q Consensus 534 ~~~~ 537 (992)
.++.
T Consensus 131 ~f~~ 134 (157)
T 1elk_A 131 AFRS 134 (157)
T ss_dssp HHTT
T ss_pred HcCC
Confidence 7753
No 152
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.38 E-value=79 Score=31.67 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCCH--HHH---HHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCC--CCCcchHH
Q 001945 49 TPNVRQLAAVLLRKKITGHWAKLSP--QLK---QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--GEWPDLLP 121 (992)
Q Consensus 49 ~~~~r~~a~~~l~~~i~~~~~~~~~--~~~---~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~ 121 (992)
+.+.|+-+..++.+.+...-..-.+ +.. ..+...|+.+-. ++.+--.+..++...++++.-- --+.+.+.
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRecir~e~la~~iL~~~~f~ 167 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRECIRHEPLAKIILWSEQFY 167 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHHHTSHHHHHHHHHSGGGG
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 5667777777666665533221111 111 222223333332 2333333444444444322100 00122334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhhh----hhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhH
Q 001945 122 FLFQFSQSEQEEHREVALILFSSLTET----IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (992)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~l~~~----~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (992)
.+++.++.++=++..-|+..+..+... ..+.+..+.+.++..+.+++.+ ++--+|..+++.|+.++.-....
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLgelLldr~N~--- 243 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGELLLDRHNF--- 243 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHSGGGH---
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhCchHH---
Confidence 566788888878888899999888754 3345667778888888888888 89999999999999987543211
Q ss_pred HHHHhhH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCC
Q 001945 198 VKFREFI--PSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (992)
Q Consensus 198 ~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 237 (992)
.....++ |.-+..+..++.+....++..|+.++.-++...
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 1112222 445666667788888899999999998887653
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=72.95 E-value=43 Score=31.93 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCC----------cHHHHHHHHhc------CC----ChhHHHHHHHHHH
Q 001945 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK-DPQ----------VVPALVQHLRT------AK----TPNVRQLAAVLLR 61 (992)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~-~p~----------~~~~l~~il~~------~~----~~~~r~~a~~~l~ 61 (992)
+.+.+++..+.+|+ .|..|-..|-.-.+ -|+ .+..|++=+.+ ++ ...-|--.+..|-
T Consensus 3 ~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 3 EKIYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 56778888888776 69889888854332 233 33334332222 11 1234545555555
Q ss_pred HhhhhcccCCCHHHHH-HHHH----HHHHHHhhc----CCHhHHHHHHHHHHHHHcccCCC-C---CCcchHHHHHHhhc
Q 001945 62 KKITGHWAKLSPQLKQ-LVKQ----SLIESITLE----HSAPVRRASANVVSIIAKYAVPA-G---EWPDLLPFLFQFSQ 128 (992)
Q Consensus 62 ~~i~~~~~~~~~~~~~-~i~~----~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~-~---~~~~ll~~l~~~l~ 128 (992)
..+..+ ++.+. .++. -|.-.|... +-+.+|-+.-.+|+.+++.+.++ - -..+++|..+..+.
T Consensus 81 QcvAsh-----petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 81 QCVASH-----PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp HHHHHC-----TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHcC-----cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 555443 22222 2222 223333321 23678989999999999865432 0 12678888889998
Q ss_pred CCCHHHHHHHHHHHHHhhhhh-h--------hcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcc
Q 001945 129 SEQEEHREVALILFSSLTETI-G--------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (992)
Q Consensus 129 ~~~~~~~~~al~~l~~l~~~~-~--------~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (992)
.++...+..|..++..+.... | +-|. .+..++.-+...+...+++.+-+..++|...+...
T Consensus 156 ~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~-av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 156 SGSELSKTVATFILQKILLDDTGLAYICQTYERFS-HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 888888888888888876442 2 1111 22233333333344337888888777777666554
No 154
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.54 E-value=57 Score=32.06 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=84.0
Q ss_pred CcchHHHHHHhhcCC------CHHHHHHHHHHHHHhhhh--hhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHh
Q 001945 116 WPDLLPFLFQFSQSE------QEEHREVALILFSSLTET--IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (992)
Q Consensus 116 ~~~ll~~l~~~l~~~------~~~~~~~al~~l~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (992)
+..=+..+..+++++ +......+|..|..+.-. +|..+..+-..++.-|. +... ..+.+|..|...++++
T Consensus 20 Fs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ss 97 (315)
T 3qml_C 20 FSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSC 97 (315)
T ss_dssp THHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHH
Confidence 444445555666554 334566777777777644 33333332223333333 4455 6778999999999999
Q ss_pred hcccCChhhHHHHHhhHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHhhCCC
Q 001945 188 LEFTNDGAEVVKFREFIPSILNVSRQCLAS-------GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN 260 (992)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~li~~~~~~~~~~~ 260 (992)
.+..++ .........|.++..++..+.. ...-..+..+.++..+++....|-...+..+...+- . ..
T Consensus 98 LRNNP~--Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~-~---~~ 171 (315)
T 3qml_C 98 LRNNPP--VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYE-R---NN 171 (315)
T ss_dssp HTTCHH--HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHH-H---TT
T ss_pred HccCHH--HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHc-c---CC
Confidence 887642 2222333345555444433322 223455667778888887754343333334444332 2 12
Q ss_pred CChHHHHHHHHHHHHHH
Q 001945 261 LEPNTRHQAIQIISWLA 277 (992)
Q Consensus 261 ~~~~~r~~a~~~l~~l~ 277 (992)
.+...+..+++++..+-
T Consensus 172 ~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 172 KDKQLQIKVLELISKIL 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 36777887777766554
No 155
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=68.10 E-value=1e+02 Score=30.85 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=82.5
Q ss_pred hhhcCCChhhHHHHHHHHHHHhhcC----HHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhhh
Q 001945 344 VSCQNASPKYREAAVTAIGIISEGC----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHY 417 (992)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ 417 (992)
+++..++..+--.|...+..+...- .+.+..+.+.++......+.+++...|..+++.||.+...-. .-+..|.
T Consensus 171 ~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yi 250 (341)
T 1upk_A 171 RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYI 250 (341)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHT
T ss_pred HHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHh
Confidence 4667777777666776666665432 345566778889988999999999999999999999987632 2234455
Q ss_pred --hhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 418 --ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 418 --~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
..-+..++..|.|++..+|..|...+.-|+.+-
T Consensus 251 s~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 251 SKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp TCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 456788899999999999999999999988653
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.37 E-value=59 Score=30.75 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhh
Q 001945 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (992)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 535 (992)
....+..|.+.+.+.++.++..|+..+..++...|..|-.-+ ..++..|..++... ....++.++++.+...+..+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ--VEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHh
Confidence 456778888888999999999999999999999887554322 34555555555432 23456778888888888766
Q ss_pred ch
Q 001945 536 GR 537 (992)
Q Consensus 536 ~~ 537 (992)
..
T Consensus 121 ~~ 122 (226)
T 3zyq_A 121 RN 122 (226)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 157
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.41 E-value=95 Score=29.46 Aligned_cols=132 Identities=8% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHhHHHHHH-HHHHHHHcccCCCCCCcc
Q 001945 40 LVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASA-NVVSIIAKYAVPAGEWPD 118 (992)
Q Consensus 40 l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~-~~l~~i~~~~~~~~~~~~ 118 (992)
++.-+-.+..-+.|.+|..+++.. +..++++....+.. .+..-.++.+...+| .+++.+.... |+ .
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~----~k~~~~~~l~~~~~----~l~~~~nWd~~D~~a~~~~g~~~~~~-p~----~ 131 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKY----KKHINETHIPFLEE----LIVTKSWWDSVDSIVPTFLGDIFLKH-PE----L 131 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHT----GGGCCGGGHHHHHH----HHTSSCCHHHHHHHTTTHHHHHHHHC-GG----G
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH----HHhCCHHHHHHHHH----HHccCCChHHHHHhhHHHHHHHHHHC-HH----H
Confidence 333333345567888888887643 23345555554442 222346788877775 5667766542 21 1
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhccc
Q 001945 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (992)
+.+.+..++.|++...|..|+.++ +. .. .......+..++...+.+ ++.-|+.+...+|..+....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~-~~---~~~d~~~~~~~i~~~~~d-~~~yV~kAvgW~Lr~~~k~~ 197 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LK-YK---QKMDEELLFWIIGQLHSS-KEFFIQKAIGWVLREYAKTN 197 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TT-CG---GGCCHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HH-HH---hCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhC
Confidence 456778899999988888887554 21 11 133455677777788888 99999999999988877654
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=65.38 E-value=36 Score=29.71 Aligned_cols=113 Identities=5% Similarity=0.024 Sum_probs=70.2
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhHhhhcHHHHhhh--hhHH
Q 001945 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (992)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ll 421 (992)
.+.++||..-..-|..+.. -+. .-...+..|.+.+.. +++.+...|+..|..+.+.++..+...+ ..++
T Consensus 28 ~l~~~Dw~~ileicD~In~----~~~----~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 28 GVQTEDWGQFMHICDIINT----TQD----GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp SCCSCCHHHHHHHHHHHHH----STT----HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCCccHHHHHHHHHHHhC----CCc----cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 3556788643333333322 111 123567777788874 6888888999999999999988765433 3445
Q ss_pred HH-HHHhcccC---ChHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHH
Q 001945 422 PC-ILNALEDE---SDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKL 465 (992)
Q Consensus 422 ~~-l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~l 465 (992)
.. +.+.+.+. ...|+..++..+......++..- .+++..+...|
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~L 148 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDL 148 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 43 44444432 34799999999998887775421 24455555444
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.41 E-value=66 Score=30.25 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhh
Q 001945 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (992)
Q Consensus 458 ~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 535 (992)
....+..|.+.+.+.++.++..|+..+..++...|..|-..+ ..++..+..++... ....++.++++.+...+.++
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST--PHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHh
Confidence 446777788888899999999999999999998887654322 23555555555442 23456778888888888776
Q ss_pred ch
Q 001945 536 GR 537 (992)
Q Consensus 536 ~~ 537 (992)
+.
T Consensus 118 ~~ 119 (220)
T 1dvp_A 118 RS 119 (220)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=61.73 E-value=54 Score=30.86 Aligned_cols=133 Identities=7% Similarity=-0.106 Sum_probs=80.1
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcC-CCChhHHHHHHHHHHHhHhhhcHHHHhhhh
Q 001945 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (992)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (992)
.++..+..++....|..|+..++.......+ .-++.+-..+. -.+..+....+.+++.+....+ .
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-------~ 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-------T 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-------G
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-------H
Confidence 4445556666677788888888766533222 22333333333 4567777766655655554322 2
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
.+.+.+..-..+++.-+|..|+.++-.. .-..+.+.+++.+...+.+++.-|+.....++..+....+
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~l~~------~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQLML------KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTTTTC------GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence 3556677777888877777665544211 1124556667766667888888899888888877665433
No 161
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=59.61 E-value=1.2e+02 Score=28.54 Aligned_cols=153 Identities=11% Similarity=0.018 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhCCC--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHhhcCCHh
Q 001945 17 NDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAP 94 (992)
Q Consensus 17 ~~~r~~A~~~l~~~~~~p--~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~~ll~~l~~~~~~~ 94 (992)
++.|+-|.+..+.....| .-+..+..+. .+..-+.|.+|+.++.... ..+.++....+. ..+..-.++.
T Consensus 35 P~lR~laK~~~k~~~~~~~~~~~~~~~~L~-~s~~~E~r~la~~~l~~~~----~~~~~~~l~~~~----~~l~~~~nWd 105 (220)
T 2b6c_A 35 PERQALSKQLLKESHTWPKEKLCQEIEAYY-QKTEREYQYVAIDLALQNV----QRFSLEEVVAFK----AYVPQKAWWD 105 (220)
T ss_dssp HHHHHHTHHHHHHHTTSCHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHTG----GGCCHHHHHHGG----GGTTTTCSHH
T ss_pred HHHHHHHHHHHHHhccCcccchHHHHHHHH-cCchhHHHHHHHHHHHHHH----hhCCHHHHHHHH----HHhccCCcHH
Confidence 344555555444432223 1233333333 3456788999998887543 123333332222 1222346788
Q ss_pred HHHHHHHHHHHHHcccCCCCCCcc-hHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhcCCCCC
Q 001945 95 VRRASANVVSIIAKYAVPAGEWPD-LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETS 173 (992)
Q Consensus 95 vr~~~~~~l~~i~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 173 (992)
+....|.+++.+... .|+ +.+.+..++.|++...|..|+..+ + .... ..+...+++++...+.+ ++
T Consensus 106 ~~D~~a~~~~~~~~~------~~~~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~~---~~~~~~~~~i~~~~~~d-~~ 172 (220)
T 2b6c_A 106 SVDAWRKFFGSWVAL------HLTELPTIFALFYGAENFWNRRVALNLQ--L-MLKE---KTNQDLLKKAIIYDRTT-EE 172 (220)
T ss_dssp HHHHHHHHHHHHHHH------SGGGHHHHHHHHTTCSSHHHHHHHHHTT--T-TCGG---GCCHHHHHHHHHHTTTC-CC
T ss_pred HHHHHHHHHHHHHHH------ChHHHHHHHHHHHcCCCHHHHHHHHHHH--H-HHHH---CCCHHHHHHHHHHhCCC-hH
Confidence 888888777777643 333 667889999999988888887644 2 1111 34557778888878888 99
Q ss_pred hHHHHHHHHHHHHhhccc
Q 001945 174 NRVRIAALKAIGSFLEFT 191 (992)
Q Consensus 174 ~~vr~~a~~~l~~l~~~~ 191 (992)
.-|+.+...+|..+....
T Consensus 173 ~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 173 FFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999998877664
No 162
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=57.01 E-value=54 Score=28.36 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc
Q 001945 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
-+..|.|..+.+-...+..|+.++... ..+...++..+.+.+....++-+..++..+.+++++...
T Consensus 10 ~L~~L~~~k~~~S~~~I~~LT~~a~~~----~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 10 ELYSLNDYKPPISKAKMTQITKAAIKA----IKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRH 75 (145)
T ss_dssp HHHGGGGSCSSCCHHHHHHHHHHHHHT----GGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhh
Confidence 344444433224444455555555543 234566777787888777788899999999999998865
No 163
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=53.24 E-value=1.1e+02 Score=26.33 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhcc
Q 001945 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (992)
Q Consensus 416 ~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 494 (992)
+.+.++..+.+.+....+.-+..++..+.+++++++.....++. .+.+.+.......+...|......+..=-...+..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC
Confidence 45667788888887778889999999999999998754443333 34444444555567777777666655443332222
Q ss_pred CcccHHHHHHHHHHHHh
Q 001945 495 FIPYAERVLELLKIFMV 511 (992)
Q Consensus 495 ~~~~~~~~~~~l~~~l~ 511 (992)
..-|-+.++..+.+.+.
T Consensus 120 ~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 120 LPLFEGSALEKIEQFLI 136 (144)
T ss_dssp SCSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 11133455555555554
No 164
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=51.04 E-value=98 Score=26.09 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc
Q 001945 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 451 (992)
+..+...++.|+.....++..+.|++... .+.+.++..+.+.+....+.-|...+..+..++..+.
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h~---------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~ 72 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIENK---------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCK 72 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Confidence 34455566677777777888777777532 2334567777777777778888899999999998874
No 165
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=50.71 E-value=1.9e+02 Score=28.42 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHH---hhhhhHHHHHHHhccc-------CChHHHHHHHHHHHHHH
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV---SHYESVLPCILNALED-------ESDEVKEKSYYALAAFC 447 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~ll~~l~~~l~~-------~~~~v~~~a~~~l~~l~ 447 (992)
.++..++ +.....+.+|..|...|+...+.-++.+. ..++.++..++..|.+ ....++.+-+++|..++
T Consensus 71 ~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~ 149 (315)
T 3qml_C 71 ALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELP 149 (315)
T ss_dssp HHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Confidence 3444444 33345677999999999999988866543 3345555555544432 12334444555555554
Q ss_pred HhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHH
Q 001945 448 EDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 448 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~ 489 (992)
... ..+..+--..+..+.... ..+..+|..+++.+..+-.
T Consensus 150 ~~~-~~F~~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 150 VTS-EDLPIYSTVVLQNVYERN-NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp CCS-TTC--CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred cCh-HhhhhccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence 443 223333212222333322 3378899999988887764
No 166
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=50.59 E-value=35 Score=32.59 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHH----HHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcH
Q 001945 336 PPVFEFASVSCQNASPKYREAAVT----AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (992)
Q Consensus 336 ~~~~~~l~~~l~~~~~~~r~~al~----~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (992)
|...+.+..+..|++.-.|.+|+. .+...... ..-...++.++..+...+.|++..||.+..|+|..++...++
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k--~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDN--AFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGG--GSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhcccc--CcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 335566677788887666666665 43431111 111245667888888899999999999999999999887643
No 167
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=46.32 E-value=1.1e+02 Score=26.45 Aligned_cols=95 Identities=7% Similarity=0.014 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhh-HHHHHHHhcccCChHHHHHHHHHHHHHHHhhccc
Q 001945 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES-VLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453 (992)
Q Consensus 375 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 453 (992)
+...|+..+...+....|.-+..+++.+..++...++.+...+.. +.+.+.......++.+|......+...-+..+..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC
Confidence 445677777777776778899999999999999887766666644 3444445554455677776666555544433322
Q ss_pred cccchHHHHHHHHHHh
Q 001945 454 ILPFLDPLMGKLLAAL 469 (992)
Q Consensus 454 ~~~~~~~l~~~l~~~l 469 (992)
..-|-+.++..+-..+
T Consensus 120 ~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 120 LPLFEGSALEKIEQFL 135 (144)
T ss_dssp SCSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 2234445566555444
No 168
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=44.95 E-value=20 Score=34.25 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=46.4
Q ss_pred HHHHHhhhcCCChhhHHHHHHHH-HHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhh
Q 001945 339 FEFASVSCQNASPKYREAAVTAI-GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (992)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l-~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (992)
.+.+..+..|++.-.|.+|+.++ .... ......+++.+...+.|++..||.+..|+|..++...++.+..+
T Consensus 133 ~~~l~~W~~s~~~w~rR~ai~~~l~~~~-------~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 133 SAYIPKWIASDNIWLQRAAILFQLKYKQ-------KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGTHHHHHHSSCHHHHHHHHHTTTTCGG-------GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 34555667777755555554432 2211 12234566677778899999999999999999998875544333
No 169
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=44.56 E-value=1.4e+02 Score=25.12 Aligned_cols=101 Identities=11% Similarity=-0.029 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc
Q 001945 818 FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG 897 (992)
Q Consensus 818 ~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~ 897 (992)
-.+-+..++|.++.+++|-+-+ +....+..|.. +-+.++|.+.+.+++.|..= -.+.+..++...
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWP-vA~~i~~~L~~-----------~~~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~ 89 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWP-IAKDILPVVVL-----------HQSIAMPHILTILQGNDIMW---KYWVIKLMIPYL 89 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTST-THHHHHHHHHH-----------THHHHHHHHHHHHHSSCHHH---HHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHH-----------ccHhhHHHHHHHHHcCChHH---HHHHHHHHHHcC
Confidence 3456678899999999998754 44444444443 22345555666666666533 344555556554
Q ss_pred CcchhhHHHHHHHhhhhhhCCC---CCChhhHhhHHHHHHHH
Q 001945 898 GESALKYYGDILRGLYPLFGDS---EPDDAVRDNAAGAVARM 936 (992)
Q Consensus 898 ~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~~n~~~~l~~l 936 (992)
+... ...+..-|..+...+ +..+.+.+.|-..+.++
T Consensus 90 ~~~~---~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 90 IYPN---KQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp CHHH---HHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4322 223333343444433 33445666666666654
No 170
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=38.72 E-value=75 Score=27.66 Aligned_cols=80 Identities=9% Similarity=0.055 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhcC-CCHhHHHHHHHHHHHHHHHhhccCcccH--HHHHH-HHHHHHhccChhhhHhHHHHHHHHHHHHH
Q 001945 458 LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLE-LLKIFMVLTNDEDLRSRARATELLGLVAE 533 (992)
Q Consensus 458 ~~~l~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~-~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (992)
-...+..+.+.+.. .++.++..|+..+..++..+|..|-..+ ..++. .|.+++.........+|.++++++...+.
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 34566777777774 4777888899999999998887654332 23443 23444432211223567788888888887
Q ss_pred hhch
Q 001945 534 SVGR 537 (992)
Q Consensus 534 ~~~~ 537 (992)
.++.
T Consensus 131 ~F~~ 134 (152)
T 3rru_A 131 GFPG 134 (152)
T ss_dssp CCSS
T ss_pred HhCC
Confidence 6643
No 171
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=35.32 E-value=3.4e+02 Score=26.85 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhh------hhHHHHHHHhcccCC-hHHHHHHHHHHHHHHHhh--
Q 001945 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY------ESVLPCILNALEDES-DEVKEKSYYALAAFCEDM-- 450 (992)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~------~~ll~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~-- 450 (992)
+..+.+.+ .-....|..++..+.-+... +....++ ..++..++..+.++. +..+--++.++.+++...
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Q ss_pred ccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHH
Q 001945 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (992)
Q Consensus 451 ~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 529 (992)
...+....+.+++.+...+.+.+..+|..+...+-+++-..- +.-.+-..+++..+.+++....+.+...| ++.++|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR--~LvALG 259 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFR--LLVALG 259 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHH--HHHHHH
Q ss_pred HHH
Q 001945 530 LVA 532 (992)
Q Consensus 530 ~l~ 532 (992)
.+.
T Consensus 260 tL~ 262 (304)
T 3ebb_A 260 TLI 262 (304)
T ss_dssp HHH
T ss_pred HHH
No 172
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=35.31 E-value=81 Score=29.85 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCCh
Q 001945 844 MVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDD 923 (992)
Q Consensus 844 ~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 923 (992)
.+.++|-.+++.+++.+.++ .+.+.++...+..+.+-|- .++..++...|..-...+..++..|..+...++.+.
T Consensus 90 ~va~lLK~fLReLPePLl~~--~l~~~~~~~~~~~~~~~~~---~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 164 (228)
T 3kuq_A 90 DVADMLKQYFRDLPEPLMTN--KLSETFLQIYQYVPKDQRL---QAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQ 164 (228)
T ss_dssp HHHHHHHHHHHHSSSCTTCS--SHHHHHHHHHHHSCGGGHH---HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHhcCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 34566667777777765553 4445555544433333343 344455555554222223333444444444344566
Q ss_pred hhHhhHHHHHHHHHHhCCCCC-C-h-hh-HHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcC
Q 001945 924 AVRDNAAGAVARMIMVNPQSI-P-L-NQ-VLPVLLKVLPLKEDFEESMAVYNCISTLVLSSN 981 (992)
Q Consensus 924 ~~~~n~~~~l~~l~~~~~~~~-~-~-~~-~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~ 981 (992)
+...|.+.++|--+...+..- . . +. +...+....|...|..|...+..+|..+|.+.+
T Consensus 165 M~~~NLAivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~ 226 (228)
T 3kuq_A 165 MTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECK 226 (228)
T ss_dssp CCHHHHHHHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC--
T ss_pred CchhHhHHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888666543321 1 1 11 122334456666778889999999999997654
No 173
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=34.84 E-value=2.1e+02 Score=24.14 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhcc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 452 (992)
+.+...+..|+...+.++..+.|++... .+...++..+.+.+....+.-|...+..+..++.++..
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~---------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHR---------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 3455556667777788888888887532 23344666666666666666788899999999987743
No 174
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.01 E-value=2.6e+02 Score=23.49 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCccc
Q 001945 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (992)
Q Consensus 419 ~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 498 (992)
..+...+..|+...+.++..+.+++.. ..+.+.+++.+.+.+......-|-..+-.+..++..+...-.+|
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~---------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y 77 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHH---------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEF 77 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHT---------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHH
Confidence 345566677776667777777777754 23556677777777766666667788888888887665433334
Q ss_pred HHHH
Q 001945 499 AERV 502 (992)
Q Consensus 499 ~~~~ 502 (992)
...+
T Consensus 78 ~~~f 81 (135)
T 4fu3_A 78 TREF 81 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 175
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=28.73 E-value=2.6e+02 Score=23.52 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=57.1
Q ss_pred chhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc
Q 001945 331 AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (992)
Q Consensus 331 ~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (992)
+..-+.+++|.+...+++.+|.........|... -..++|.+...++..+..= ..+++..+...++
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~-----------~~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~~ 90 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH-----------QSIAMPHILTILQGNDIMW---KYWVIKLMIPYLI 90 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT-----------HHHHHHHHHHHHHSSCHHH---HHHHHHHHGGGCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc-----------cHhhHHHHHHHHHcCChHH---HHHHHHHHHHcCC
Confidence 4445566778888899999998866555444432 2244555555555545433 3566666666665
Q ss_pred HHHHhhhhhHHHHHHHhcccC-----ChHHHHHHHHHHHHH
Q 001945 411 PEIVSHYESVLPCILNALEDE-----SDEVKEKSYYALAAF 446 (992)
Q Consensus 411 ~~~~~~~~~ll~~l~~~l~~~-----~~~v~~~a~~~l~~l 446 (992)
.. ....+.+.+.+....+ ...|...|-..|..+
T Consensus 91 ~~---~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 91 YP---NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HH---HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 33 2344556666655554 244555565555544
No 176
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=27.25 E-value=5.3e+02 Score=26.53 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHhHhhhcHHHHh--hhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhc-cc-cccchHHH----
Q 001945 390 PEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EE-ILPFLDPL---- 461 (992)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~-~~~~~~~l---- 461 (992)
.+......++.||..+...-. .+.. ..+..+..+..++..+.+.++..+...|..++...+ .. ....++.+
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~-G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKF-GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHH-HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchh-hHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 455778888888888866431 1111 235678888899988889999999998888775432 11 11111111
Q ss_pred -------HHHHHHHhcC-CCHhHHHHHHHHHHHHHHHhh
Q 001945 462 -------MGKLLAALEN-SPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 462 -------~~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~ 492 (992)
+..++..+.. .+.+.+..++..+..++...+
T Consensus 211 ~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 211 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 2334444554 456777777888887776543
No 177
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=27.23 E-value=9.5e+02 Score=29.48 Aligned_cols=117 Identities=9% Similarity=0.028 Sum_probs=74.0
Q ss_pred HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhh
Q 001945 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (992)
Q Consensus 413 ~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 492 (992)
+..+++.++...-..+.+.++.|+.-+......+...+.. .+-..++..|+....++...-...|+..+..++...+
T Consensus 394 L~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~---~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 394 LKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT---YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 3456666776666777788889998888888877777632 3345777777777666655445568999998888777
Q ss_pred ccCcccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhc
Q 001945 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (992)
Q Consensus 493 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 536 (992)
+.+.+|..- +..+...+..-+..+ +| +.+..++.++-.-+
T Consensus 471 ~~l~~~a~~-l~giLD~l~~l~~~Q--iR-klf~iL~~laf~~~ 510 (1323)
T 3s4w_B 471 SAMRLNAAF-VKGILDYLENMSPQQ--IR-KIFCILSTLAFSQQ 510 (1323)
T ss_dssp HHHHHTHHH-HHGGGGGGGGCCHHH--HH-HHHHHHHHHHHHHC
T ss_pred HHHhHHHHH-HHHHHHhhcCCCHHH--HH-HHHHHHHHHHcCCC
Confidence 766665443 222333333333222 22 46777777664433
No 178
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=27.15 E-value=3e+02 Score=24.76 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHhhcccCC----h-hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccchHHHHH
Q 001945 172 TSNRVRIAALKAIGSFLEFTND----G-AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK 246 (992)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~----~-~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 246 (992)
+..+||.+...++...+..... . .....+...+...-..+...+. +.+....++..+..++...+ .+.+.++
T Consensus 49 s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~~~~~--~~~~q~~lL~ale~~~~~~~-~~~~~~~ 125 (182)
T 3jui_A 49 SLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIK--RAADHLEALAAIEDFFLEHE-ALGISMA 125 (182)
T ss_dssp CHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHCG-GGGGGHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCc-hHHHHHH
Confidence 6788999999988777533211 1 1122233344444444444433 34445566666666654333 3344566
Q ss_pred HHHHHHH
Q 001945 247 SIVHFSL 253 (992)
Q Consensus 247 ~li~~~~ 253 (992)
.++..+.
T Consensus 126 ~il~~LY 132 (182)
T 3jui_A 126 KVLMAFY 132 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 179
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.27 E-value=5.3e+02 Score=26.21 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhc--HHHHhh---hhhHHHHHH
Q 001945 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSH---YESVLPCIL 425 (992)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~---~~~ll~~l~ 425 (992)
|..|..++..+..++...+. ...+..++... +.+..+..+..+++++..+...-. ..+... ...++..+.
T Consensus 177 Wp~~FP~LDLLRl~v~~~~~--~~~l~~li~~~---~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 177 WEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEG---LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 251 (362)
T ss_dssp CSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHH---TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred CCccchHHHHHHHHhcCCCh--HHHHHHHHHHh---cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHH
Confidence 55688888888877765431 12233333333 335678889999999888866532 222211 223333332
Q ss_pred Hhcc----cCChHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHHHhc---------CCCHhHHHHHHHHHHHHHH
Q 001945 426 NALE----DESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALE---------NSPRNLQETCMSAIGSVAA 489 (992)
Q Consensus 426 ~~l~----~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~---------~~~~~v~~~a~~~l~~l~~ 489 (992)
..+. ..+..+|.++.+.+-++.-...+ ... ..+...+..++. ..+.+..-.++-++|.++.
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2221 22456788888888777654322 111 122333333333 2366777788888888874
No 180
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=23.43 E-value=1.7e+02 Score=27.70 Aligned_cols=73 Identities=8% Similarity=-0.008 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCCCccchhhHHH----HHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcch
Q 001945 826 FDPLMKFAKSSRPLQDRTMVVA----TLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESA 901 (992)
Q Consensus 826 ~~~l~~~l~~~~~~~~r~~al~----~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 901 (992)
.+.+.+++.+++.+ .|..|+. .++.+. .+..-..+.+.++..+...+.+++.-|+.+..++|..+....++..
T Consensus 110 ~~~~~~W~~s~~~w-~rR~ai~~q~~ll~~~~--~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~ 186 (235)
T 1t06_A 110 QDVADKWIASGDEL-KMSAGWSCYCWLLGNRK--DNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH 186 (235)
T ss_dssp HHHHHHHHHSCCHH-HHHHHHHHHHHHHHHSC--GGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHcCcHHH-HHHHHHHHHHHHHhhcc--ccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH
Confidence 45566777777765 5777877 555511 1111234678888888889999999999999999999999987743
No 181
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.64 E-value=6.2e+02 Score=27.95 Aligned_cols=112 Identities=10% Similarity=0.062 Sum_probs=71.7
Q ss_pred chHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCH-----H-HHH-HhHHHHHHHHHhhc-CCCChhHHHHHHHHHHHh
Q 001945 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-----E-WMK-EKLESVLHIVLGAL-RDPEQFVRGAASFALGQF 405 (992)
Q Consensus 334 ~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-----~-~~~-~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l 405 (992)
+++.-+..+...++++.......++..+..+..... . ... +....+...+...+ ..|+..+|..|..+++.+
T Consensus 314 if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~ 393 (596)
T 4f52_E 314 LLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLY 393 (596)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 445556677777888877777778877776665321 1 000 11122333333332 368999999999999999
Q ss_pred HhhhcHHHHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhh
Q 001945 406 AEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (992)
Q Consensus 406 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 450 (992)
...++++ .++. ++..++... ..+.++..++..+.+-+...
T Consensus 394 I~~~~~e-~R~~--iL~~LL~~~--~~~~v~~~lI~~~KdeI~~a 433 (596)
T 4f52_E 394 INKLDSQ-GKYT--LFRCLLNTS--NHSGVEAFIIQNIKNQIDMS 433 (596)
T ss_dssp HHHBCHH-HHHH--HHHHHHHHH--CCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCChH-HHHH--HHHHHHhcC--CChHHHHHHHHHHHHHHHHH
Confidence 9988764 3432 556665544 34688888888888766554
No 182
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=20.18 E-value=4e+02 Score=22.63 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHHHHhhhhhHHHHHHHhcccC--ChHHHHHHHHHHHHHHHhhc
Q 001945 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG 451 (992)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~ 451 (992)
+.+...+..|+.....++..+.|++... .+.+.++..+.+.+... .+.-|...+..+..++..+.
T Consensus 6 ~~l~~kL~~L~~sq~sIq~~s~W~l~h~---------~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk 72 (142)
T 2km4_A 6 EQFTTKLNTLEDSQESISSASKWLLLQY---------RDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK 72 (142)
T ss_dssp HHHHHHHHTCCSCHHHHHHHHHHHHTCG---------GGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh
Confidence 3455666777777777888887777421 23455777777777765 56778888999999998775
Done!