Query 001947
Match_columns 992
No_of_seqs 417 out of 3294
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 6.3E-64 2.2E-68 586.1 32.2 428 478-976 22-518 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 1.4E-53 4.9E-58 502.3 37.0 417 479-976 39-475 (478)
3 1pie_A Galactokinase; galactos 100.0 8.7E-52 3E-56 480.9 34.9 382 479-976 31-416 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.3E-49 4.6E-54 459.7 29.1 374 479-976 20-397 (399)
5 2cz9_A Probable galactokinase; 100.0 2.2E-47 7.6E-52 434.0 29.0 347 497-975 2-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 2.8E-46 9.7E-51 424.3 19.6 322 496-975 3-338 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 1.5E-42 5.1E-47 400.4 23.4 342 496-975 5-379 (395)
8 3k17_A LIN0012 protein; protei 100.0 2.2E-41 7.7E-46 384.7 26.5 303 496-963 6-346 (365)
9 3gon_A Phosphomevalonate kinas 100.0 3.6E-41 1.2E-45 380.3 21.4 296 496-963 1-323 (335)
10 2pg9_A Phosphomevalonate kinas 100.0 8.4E-40 2.9E-44 368.5 24.8 295 496-964 3-326 (337)
11 2x7i_A Mevalonate kinase; tran 100.0 5.1E-37 1.8E-41 342.4 23.1 290 496-955 6-297 (308)
12 4hac_A Mevalonate kinase; GHMP 100.0 4.3E-36 1.5E-40 336.1 30.0 306 488-975 13-320 (321)
13 2hfs_A Mevalonate kinase, puta 100.0 5E-36 1.7E-40 338.0 28.5 301 494-956 11-314 (332)
14 2oi2_A Mevalonate kinase; enzy 100.0 4.8E-34 1.6E-38 315.8 23.3 282 496-960 5-288 (292)
15 1kkh_A Mevalonate kinase; mixe 100.0 8.3E-34 2.8E-38 317.8 25.4 291 495-951 4-303 (317)
16 1h72_C HK, homoserine kinase; 100.0 2.8E-29 9.6E-34 278.2 22.9 290 497-975 3-295 (296)
17 3s2u_A UDP-N-acetylglucosamine 100.0 1.3E-28 4.3E-33 281.1 24.9 317 23-373 8-357 (365)
18 4amg_A Snogd; transferase, pol 99.9 1.1E-26 3.9E-31 267.3 23.2 335 14-370 21-398 (400)
19 2iya_A OLEI, oleandomycin glyc 99.9 6.8E-26 2.3E-30 263.5 26.5 348 10-372 7-421 (424)
20 3rsc_A CALG2; TDP, enediyne, s 99.9 9.7E-26 3.3E-30 261.1 25.4 346 10-372 17-413 (415)
21 3ia7_A CALG4; glycosysltransfe 99.9 2.5E-25 8.7E-30 255.9 25.5 343 16-372 5-398 (402)
22 2yjn_A ERYCIII, glycosyltransf 99.9 8.5E-25 2.9E-29 255.8 23.2 347 14-373 19-436 (441)
23 4fzr_A SSFS6; structural genom 99.9 1.4E-24 5E-29 250.1 24.0 335 14-368 14-396 (398)
24 1iir_A Glycosyltransferase GTF 99.9 9.4E-24 3.2E-28 244.9 28.7 337 16-372 1-400 (415)
25 3h4t_A Glycosyltransferase GTF 99.9 2.4E-24 8.4E-29 249.1 23.6 338 16-373 1-383 (404)
26 3oti_A CALG3; calicheamicin, T 99.9 8.4E-25 2.9E-29 252.1 15.6 328 16-372 21-397 (398)
27 1rrv_A Glycosyltransferase GTF 99.9 3.5E-23 1.2E-27 240.1 28.6 337 16-372 1-401 (416)
28 2gs8_A Mevalonate pyrophosphat 99.9 2.1E-24 7.1E-29 241.4 17.3 301 494-975 6-317 (317)
29 2p6p_A Glycosyl transferase; X 99.9 1.6E-23 5.6E-28 239.9 21.4 334 16-371 1-378 (384)
30 2v8p_A 4-diphosphocytidyl-2-C- 99.9 5.7E-24 2E-28 232.3 16.5 166 496-737 4-174 (271)
31 2iyf_A OLED, oleandomycin glyc 99.9 4.4E-23 1.5E-27 240.1 24.3 343 13-371 5-398 (430)
32 3tsa_A SPNG, NDP-rhamnosyltran 99.9 1.6E-23 5.5E-28 240.5 20.3 338 16-372 2-388 (391)
33 3hbf_A Flavonoid 3-O-glucosylt 99.9 3.2E-22 1.1E-26 232.9 28.4 326 14-349 12-414 (454)
34 3otg_A CALG1; calicheamicin, T 99.9 4E-23 1.4E-27 238.7 19.9 343 14-372 19-408 (412)
35 2vch_A Hydroquinone glucosyltr 99.9 7.9E-22 2.7E-26 232.8 30.3 318 16-348 7-428 (480)
36 3pyf_A 4-diphosphocytidyl-2-C- 99.9 1.4E-22 5E-27 224.5 22.2 289 496-976 5-300 (306)
37 2c1x_A UDP-glucose flavonoid 3 99.9 3E-22 1E-26 234.9 24.5 325 16-350 8-413 (456)
38 2pq6_A UDP-glucuronosyl/UDP-gl 99.9 4.1E-22 1.4E-26 235.7 25.5 330 13-350 6-440 (482)
39 3qt5_A Mevalonate diphosphate 99.9 1.9E-22 6.6E-27 225.9 21.4 304 497-975 10-330 (332)
40 2acv_A Triterpene UDP-glucosyl 99.9 7.1E-21 2.4E-25 223.7 27.2 321 14-348 8-424 (463)
41 2ww4_A 4-diphosphocytidyl-2C-m 99.9 1.9E-22 6.6E-27 221.3 11.2 168 498-738 4-182 (283)
42 1uek_A 4-(cytidine 5'-diphosph 99.9 1.5E-21 5.2E-26 213.7 14.7 158 498-737 3-165 (275)
43 3hul_A HSK, HK, homoserine kin 99.9 4.1E-20 1.4E-24 204.1 24.9 282 497-976 3-289 (298)
44 1f0k_A MURG, UDP-N-acetylgluco 99.8 6.3E-19 2.1E-23 199.8 24.3 320 16-372 7-355 (364)
45 3hbm_A UDP-sugar hydrolase; PS 99.8 1.8E-18 6E-23 188.7 23.4 240 23-331 11-274 (282)
46 1fi4_A Mevalonate 5-diphosphat 99.8 3.3E-17 1.1E-21 188.9 22.6 228 609-956 92-348 (416)
47 2o6l_A UDP-glucuronosyltransfe 99.7 7.1E-16 2.4E-20 155.6 15.5 138 210-350 8-155 (170)
48 3lto_A Mevalonate diphosphate 99.5 5.6E-13 1.9E-17 147.1 21.0 216 614-955 78-308 (323)
49 2jzc_A UDP-N-acetylglucosamine 99.5 7E-14 2.4E-18 146.5 11.7 151 216-371 21-222 (224)
50 2hke_A Diphosphomevalonate dec 99.4 1.8E-12 6.2E-17 147.8 19.7 222 609-956 75-319 (380)
51 3c48_A Predicted glycosyltrans 99.3 7.7E-11 2.6E-15 136.6 22.1 131 212-351 232-393 (438)
52 3f0n_A Mevalonate pyrophosphat 99.3 3.1E-11 1.1E-15 135.9 16.0 207 629-957 122-346 (414)
53 3okp_A GDP-mannose-dependent a 99.3 7.6E-11 2.6E-15 134.1 18.8 289 14-350 3-345 (394)
54 2jjm_A Glycosyl transferase, g 99.3 6.9E-10 2.4E-14 126.8 26.4 132 210-350 198-351 (394)
55 3ot5_A UDP-N-acetylglucosamine 99.3 6.8E-11 2.3E-15 136.2 17.5 148 212-372 216-393 (403)
56 3dzc_A UDP-N-acetylglucosamine 99.2 6.9E-11 2.4E-15 135.8 17.2 148 211-368 217-395 (396)
57 3fro_A GLGA glycogen synthase; 99.2 1.9E-10 6.5E-15 132.7 20.7 132 210-352 239-399 (439)
58 2iw1_A Lipopolysaccharide core 99.2 5.8E-10 2E-14 125.9 23.1 132 210-350 183-338 (374)
59 2x6q_A Trehalose-synthase TRET 99.2 1.1E-09 3.9E-14 125.9 24.1 299 12-350 37-380 (416)
60 1vgv_A UDP-N-acetylglucosamine 99.2 5E-10 1.7E-14 127.3 18.6 151 212-372 193-374 (384)
61 1v4v_A UDP-N-acetylglucosamine 99.1 7.6E-10 2.6E-14 125.6 15.3 141 222-372 197-366 (376)
62 2r60_A Glycosyl transferase, g 99.1 6.2E-09 2.1E-13 122.9 22.4 131 211-350 245-425 (499)
63 2iuy_A Avigt4, glycosyltransfe 99.0 3.1E-10 1.1E-14 127.0 8.4 260 13-348 1-307 (342)
64 2gek_A Phosphatidylinositol ma 99.0 8.3E-09 2.9E-13 117.8 18.5 291 15-350 20-350 (406)
65 3beo_A UDP-N-acetylglucosamine 98.9 6.9E-08 2.4E-12 109.0 22.3 147 212-371 197-373 (375)
66 4hwg_A UDP-N-acetylglucosamine 98.9 1.5E-08 5E-13 115.8 15.6 242 106-371 82-374 (385)
67 1rzu_A Glycogen synthase 1; gl 98.8 2E-08 6.8E-13 118.0 13.7 130 210-347 277-438 (485)
68 2qzs_A Glycogen synthase; glyc 98.7 8.7E-08 3E-12 112.5 13.6 129 210-347 277-439 (485)
69 2hy7_A Glucuronosyltransferase 98.6 5E-06 1.7E-10 95.5 25.8 135 222-370 220-373 (406)
70 3oy2_A Glycosyltransferase B73 98.6 1.4E-07 4.9E-12 108.1 11.3 131 212-351 171-357 (413)
71 2vsy_A XCC0866; transferase, g 98.4 5.9E-07 2E-11 107.7 12.4 132 213-350 367-523 (568)
72 3s28_A Sucrose synthase 1; gly 98.4 5.3E-06 1.8E-10 102.7 20.5 176 215-401 562-797 (816)
73 2x0d_A WSAF; GT4 family, trans 98.4 1.8E-06 6.1E-11 99.5 14.2 96 247-351 276-381 (413)
74 2xci_A KDO-transferase, 3-deox 98.3 3.5E-05 1.2E-09 87.4 21.3 84 262-352 260-348 (374)
75 2f9f_A First mannosyl transfer 98.2 1.2E-05 4.2E-10 80.7 12.6 124 218-351 18-164 (177)
76 3vue_A GBSS-I, granule-bound s 98.0 0.00014 4.6E-09 86.6 19.9 131 211-348 313-476 (536)
77 2bfw_A GLGA glycogen synthase; 97.9 4.3E-05 1.5E-09 77.8 12.0 129 210-350 24-182 (200)
78 3qhp_A Type 1 capsular polysac 97.3 0.00045 1.5E-08 67.9 7.8 117 224-350 2-141 (166)
79 1psw_A ADP-heptose LPS heptosy 97.1 0.0063 2.2E-07 67.6 16.3 255 17-307 2-288 (348)
80 3tov_A Glycosyl transferase fa 97.1 0.015 5E-07 65.0 18.9 248 13-306 8-287 (349)
81 3rhz_A GTF3, nucleotide sugar 96.4 0.0097 3.3E-07 66.2 10.2 110 224-346 178-301 (339)
82 3q3e_A HMW1C-like glycosyltran 90.0 0.27 9.2E-06 58.4 5.7 86 261-350 498-589 (631)
83 1uqt_A Alpha, alpha-trehalose- 89.2 0.44 1.5E-05 55.4 6.6 76 264-350 333-420 (482)
84 3nb0_A Glycogen [starch] synth 88.1 0.43 1.5E-05 57.1 5.5 70 272-347 511-592 (725)
85 2wqk_A 5'-nucleotidase SURE; S 88.0 2 6.8E-05 45.2 10.1 36 13-53 1-36 (251)
86 3t5t_A Putative glycosyltransf 86.3 0.9 3.1E-05 52.7 6.8 79 263-351 353-440 (496)
87 2gt1_A Lipopolysaccharide hept 84.3 1.8 6.3E-05 47.0 7.9 121 221-349 176-322 (326)
88 3l7i_A Teichoic acid biosynthe 82.8 4.4 0.00015 49.5 11.3 152 211-372 526-719 (729)
89 4gyw_A UDP-N-acetylglucosamine 72.7 3 0.0001 50.9 5.5 79 261-347 579-663 (723)
90 3ty2_A 5'-nucleotidase SURE; s 71.2 7.7 0.00026 40.7 7.3 40 11-53 7-46 (261)
91 2phj_A 5'-nucleotidase SURE; S 69.3 21 0.00071 37.3 10.1 35 16-53 2-36 (251)
92 3ug7_A Arsenical pump-driving 66.2 24 0.00081 38.8 10.5 41 12-54 24-64 (349)
93 3zq6_A Putative arsenical pump 55.3 47 0.0016 35.8 10.4 38 17-54 15-52 (324)
94 2v4n_A Multifunctional protein 52.0 57 0.0019 34.1 9.7 35 16-53 2-36 (254)
95 2vqe_B 30S ribosomal protein S 48.3 62 0.0021 33.7 9.3 30 117-146 157-189 (256)
96 3igf_A ALL4481 protein; two-do 47.9 40 0.0014 37.4 8.3 36 18-54 4-39 (374)
97 1j9j_A Stationary phase surviV 46.0 73 0.0025 33.1 9.4 30 22-53 6-35 (247)
98 3iqw_A Tail-anchored protein t 44.7 38 0.0013 37.0 7.4 39 16-54 16-54 (334)
99 3sbx_A Putative uncharacterize 42.5 41 0.0014 33.5 6.6 38 276-313 105-152 (189)
100 3ri6_A O-acetylhomoserine sulf 40.6 2.9 0.0001 47.6 -2.5 47 400-450 378-426 (430)
101 1ydh_A AT5G11950; structural g 39.7 32 0.0011 35.1 5.3 38 276-313 102-149 (216)
102 4fyk_A Deoxyribonucleoside 5'- 38.7 19 0.00066 34.5 3.3 72 275-348 64-141 (152)
103 2khz_A C-MYC-responsive protei 38.6 35 0.0012 33.1 5.3 34 275-308 73-112 (165)
104 1s2d_A Purine trans deoxyribos 36.0 35 0.0012 33.2 4.8 32 275-306 77-116 (167)
105 1g5t_A COB(I)alamin adenosyltr 35.7 1.9E+02 0.0065 28.8 10.2 33 22-54 34-66 (196)
106 3io3_A DEHA2D07832P; chaperone 34.6 75 0.0026 34.8 7.8 39 16-54 18-58 (348)
107 1jx7_A Hypothetical protein YC 34.6 40 0.0014 30.0 4.7 39 13-51 1-41 (117)
108 3qua_A Putative uncharacterize 33.3 41 0.0014 33.7 4.9 38 276-313 114-161 (199)
109 3mc3_A DSRE/DSRF-like family p 32.1 43 0.0015 31.1 4.6 40 12-51 14-53 (134)
110 3auf_A Glycinamide ribonucleot 31.4 92 0.0032 31.9 7.3 33 16-52 23-58 (229)
111 3qjg_A Epidermin biosynthesis 31.1 33 0.0011 33.7 3.7 36 16-53 6-41 (175)
112 2d1p_B TUSC, hypothetical UPF0 30.9 60 0.002 29.4 5.2 38 13-50 1-38 (119)
113 3ehd_A Uncharacterized conserv 30.4 50 0.0017 32.0 4.8 33 275-307 65-105 (162)
114 4gi5_A Quinone reductase; prot 30.0 50 0.0017 35.0 5.2 41 12-52 19-61 (280)
115 1t35_A Hypothetical protein YV 29.3 74 0.0025 31.6 6.0 37 276-312 94-140 (191)
116 1yt5_A Inorganic polyphosphate 28.7 81 0.0028 32.8 6.5 53 279-349 41-96 (258)
117 2hy5_B Intracellular sulfur ox 28.5 56 0.0019 30.5 4.7 39 12-50 4-42 (136)
118 1qv9_A F420-dependent methylen 28.5 67 0.0023 32.8 5.3 35 112-146 58-99 (283)
119 2hy5_A Putative sulfurtransfer 28.2 65 0.0022 29.6 5.1 34 17-50 2-38 (130)
120 2ywr_A Phosphoribosylglycinami 28.1 1.1E+02 0.0038 30.9 7.2 34 16-53 2-38 (216)
121 2f62_A Nucleoside 2-deoxyribos 27.8 51 0.0018 31.8 4.4 33 275-307 63-106 (161)
122 3lqk_A Dipicolinate synthase s 27.7 55 0.0019 32.9 4.7 38 14-53 6-44 (201)
123 3pdi_B Nitrogenase MOFE cofact 25.8 1.9E+02 0.0063 32.9 9.3 32 111-144 368-399 (458)
124 1f8y_A Nucleoside 2-deoxyribos 24.7 63 0.0021 31.0 4.3 33 275-307 74-114 (157)
125 3qvo_A NMRA family protein; st 24.6 72 0.0025 32.2 5.2 67 223-289 23-98 (236)
126 2lpm_A Two-component response 24.6 47 0.0016 30.4 3.3 40 108-147 43-88 (123)
127 3av3_A Phosphoribosylglycinami 24.5 83 0.0029 31.7 5.5 34 13-52 3-39 (212)
128 3dhn_A NAD-dependent epimerase 24.4 68 0.0023 31.9 4.9 66 224-289 5-77 (227)
129 2iz6_A Molybdenum cofactor car 23.7 1.2E+02 0.0042 29.6 6.3 32 276-307 104-139 (176)
130 4ds3_A Phosphoribosylglycinami 22.4 1.5E+02 0.0051 29.8 6.8 38 12-53 4-44 (209)
131 3zqu_A Probable aromatic acid 22.2 1.1E+02 0.0037 30.9 5.7 38 12-53 3-40 (209)
132 2a33_A Hypothetical protein; s 22.2 98 0.0034 31.4 5.4 42 271-312 97-152 (215)
133 3nmy_A Xometc, cystathionine g 21.9 5.7 0.00019 44.7 -4.4 47 401-451 346-394 (400)
134 1weh_A Conserved hypothetical 21.4 2.6E+02 0.0089 27.0 8.2 35 271-306 85-134 (171)
135 2r8r_A Sensor protein; KDPD, P 21.2 1.4E+02 0.0047 30.5 6.3 39 15-54 6-44 (228)
136 3rft_A Uronate dehydrogenase; 21.0 82 0.0028 32.5 4.8 66 224-289 4-74 (267)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=6.3e-64 Score=586.12 Aligned_cols=428 Identities=19% Similarity=0.293 Sum_probs=308.9
Q ss_pred HHHHHHHHHhccCCCCCceEEEEcCccccccccccccCCCeeeccccccceEEEEEec--CcchhhhhhhhhhccCCCCC
Q 001947 478 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQ 555 (992)
Q Consensus 478 ~~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~~~ 555 (992)
.+..-...|...||. +|.++++||||||||||||||+||+||||||+++++++++++ +|++++
T Consensus 22 R~~~l~~~F~~~fg~-~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~-------------- 86 (520)
T 3v2u_C 22 KHLAVVDAFFQTYHV-KPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSIT-------------- 86 (520)
T ss_dssp HHHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEE--------------
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEE--------------
Confidence 355556778999996 556789999999999999999999999999999999999998 665544
Q ss_pred CCCCeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHH---HHHHh------CCC
Q 001947 556 GPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV---LMTEL------GVR 626 (992)
Q Consensus 556 ~~~~~i~i~s~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~---~~~~~------g~~ 626 (992)
|.|.+..+. ...|++++++. ++.+ ......|.||+++++.. ++++. |..
T Consensus 87 -------i~S~~~~~~--~~~~~l~~~~~-----~~~i--------~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~ 144 (520)
T 3v2u_C 87 -------LTNADPKFA--QRKFDLPLDGS-----YMAI--------DPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTP 144 (520)
T ss_dssp -------EEESSTTSC--CEEEECCTTCC-----CCCC--------CTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSC
T ss_pred -------EEECCCCCC--ceEEEeccCcc-----cccc--------CcccccHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 444321110 11233322320 0111 01236899999997643 34432 345
Q ss_pred CCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcce
Q 001947 627 FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANK 703 (992)
Q Consensus 627 ~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~---~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~ 703 (992)
+ .||++.|.|+||.|+|| |||++||++.|++.++ +.++++.+++++|+.+|+ ++|.|||+|||+++++|+.++
T Consensus 145 ~-~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~ 220 (520)
T 3v2u_C 145 L-VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDH 220 (520)
T ss_dssp C-CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTB
T ss_pred C-CceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCe
Confidence 4 79999999999999999 9999999999999999 778999999999999997 999999999999999999999
Q ss_pred EEEEeecC-ccceeeecCCC----CeEEEEEeCCC---ccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCC
Q 001947 704 LLAMVCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLN 775 (992)
Q Consensus 704 ~~~~~~~~-~~~~~~v~~p~----~~~~vl~dsgi---~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~ 775 (992)
++++||++ +++ +.+++|+ ++.|+|+||++ +|.+++++||.||++|..+.+++...-...+.+ ...+....
T Consensus 221 ~l~id~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~-~~~~~~~~ 298 (520)
T 3v2u_C 221 ALYVEFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPS-HKDNSNSE 298 (520)
T ss_dssp EEEEECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCC-CCSCSSCT
T ss_pred EEEEEcCCCcee-EEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccc-cccccccc
Confidence 99999999 776 7889986 89999999999 889999999999999976666553210000000 00000000
Q ss_pred CCCcchhhhhHHH--------------------HhhhhHHHhcCC------------hHHHHHHHhhcCCccchhhhhhh
Q 001947 776 NIEPEVDGVELLE--------------------AEASLDYLCNLS------------PHRFEALYAKNIPESIVGEEFSK 823 (992)
Q Consensus 776 ~~~~~~~~~~~l~--------------------~~~~~~~L~~~~------------~~~~~~~~~~~lp~~i~~~~~~~ 823 (992)
. ..+..+. ....++.+.++. .+++.+. +. ++.++|.+
T Consensus 299 ~-----~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~----l~--~~~~~l~~ 367 (520)
T 3v2u_C 299 R-----GNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTA----LN--CSREEFTR 367 (520)
T ss_dssp T-----CCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHH----TT--SCHHHHHH
T ss_pred c-----ccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHh----hc--CChhhhhh
Confidence 0 0011110 000111111111 1111111 10 12233333
Q ss_pred hcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccC--C-hhHHHHHHHHHHHhhhhhhhc-CCCCchHHH
Q 001947 824 NYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAA--S-DDQLTSLGELLYQCHYSYSAC-GLGSDGTDR 899 (992)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~--~-~~d~~~lG~lm~~sH~slr~~-~vs~~~lD~ 899 (992)
.|.+. +++ ..+.|.+++|++|+|+||.||.+++++|++++ + .+|++.||+||++||.|||++ |||||++|.
T Consensus 368 ~~l~~-~~~----~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~ 442 (520)
T 3v2u_C 368 DYLTT-FPV----RFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQ 442 (520)
T ss_dssp HHTSS-SCE----EESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHH
T ss_pred hhccc-ccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 33322 121 12345689999999999999999999999852 1 237999999999999999995 999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEc---cCCcccHHHHHHHHHHHHhhcCC-------CCeEEee-
Q 001947 900 LVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIG---RNSLRSSEQVLEIQQRYKDATGY-------LPLIIEG- 968 (992)
Q Consensus 900 lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~---~~~~~~~~~~~~i~~~y~~~~g~-------~~~~~~~- 968 (992)
|+++|++ .|++||||||||||||+++|+ +.+. .++++++|.++|+++... ++.+|.+
T Consensus 443 lv~~a~~-----------~Ga~GarlTGaG~GGc~iaLv~~~~~~~-~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 510 (520)
T 3v2u_C 443 ICSIALA-----------NGSFGSRLTGAGWGGCTIHLVPSGANGN-VEQVRKALIEKFYNVRYPDLTDEELKDAIIVSK 510 (520)
T ss_dssp HHHHHHH-----------TTCSEEEECSSCSSSEEEEEEEESTTCS-HHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECC
T ss_pred HHHHHHh-----------CCCCEEEEecCCCCceEEEEEcCCCHHH-HHHHHHHHHHHHHhccCCccccccCCCeEEEec
Confidence 9999987 699999999999999999887 4433 578999999999988643 4788886
Q ss_pred cCCCCcee
Q 001947 969 SSPGAGKF 976 (992)
Q Consensus 969 ~~~Ga~~~ 976 (992)
++.||..+
T Consensus 511 p~~GA~i~ 518 (520)
T 3v2u_C 511 PALGTCLY 518 (520)
T ss_dssp CCCCSEEE
T ss_pred CCCceEEe
Confidence 67777655
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1.4e-53 Score=502.30 Aligned_cols=417 Identities=20% Similarity=0.255 Sum_probs=306.1
Q ss_pred HHHHHHHHhccCCCCCceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCC
Q 001947 479 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 558 (992)
Q Consensus 479 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 558 (992)
+..-...|...||. +|.++++||||++|+|||+||+|+.+|++||++++++.+++++++++
T Consensus 39 ~~~~~~~f~~~fg~-~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i------------------ 99 (478)
T 2a2c_A 39 LLKLKEMFNSKFGS-IPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYAL------------------ 99 (478)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCE------------------
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeE------------------
Confidence 44455789999995 56689999999999999999999999999999999999999876543
Q ss_pred CeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeC
Q 001947 559 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 638 (992)
Q Consensus 559 ~~i~i~s~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~ 638 (992)
+|.+.+..+ +.|+++++++.. ......|.||+++++..+++.++.....|++|.|.|+
T Consensus 100 ---~i~~~~~~~----~~~~~~~~~l~~---------------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~ 157 (478)
T 2a2c_A 100 ---QLANTNPLY----PDFSTSANNIQI---------------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGN 157 (478)
T ss_dssp ---EEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEEC
T ss_pred ---EEEECCCCC----cceeccchhccc---------------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 343332111 124444433210 0234689999988888777766641127999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeee
Q 001947 639 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 718 (992)
Q Consensus 639 iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v 718 (992)
||.|+|||||||++||++.|++.++|.++++++|+++|+.+|+ +.|.+||+|||+++++|+.+.+++++|++... .++
T Consensus 158 IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~ 235 (478)
T 2a2c_A 158 IPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDV 235 (478)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEE
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hcCCCCccHHHHHHHhccCCcEEEEEcCCCce-EEe
Confidence 9999999999999999999999999999999999999999997 58999999999999999777789999988655 788
Q ss_pred cCCCCeEEEEEeCCCccccC-CCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHh
Q 001947 719 EIPSHIRFWGIDSGIRHSVG-GADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 797 (992)
Q Consensus 719 ~~p~~~~~vl~dsgi~~~~~-~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 797 (992)
++|+++.|+|+||++++++. ..+||.||.+|..+++++... .+. ++.+ ...+..+ +...
T Consensus 236 ~~~~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~--------~~~----~~~~--~~~l~d~------~~~~ 295 (478)
T 2a2c_A 236 KLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKY--------KSL----QWDK--VLRLEEV------QAKL 295 (478)
T ss_dssp CCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHH--------TTC----CTTT--CCCHHHH------HHHH
T ss_pred cCCCCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhh--------hcc----cccc--cchHHhh------hhhh
Confidence 88889999999999999754 489999999996655555421 100 0000 0011111 1111
Q ss_pred cCChHHHHHHHhhcCCc-c-----------chhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHh
Q 001947 798 NLSPHRFEALYAKNIPE-S-----------IVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLT 865 (992)
Q Consensus 798 ~~~~~~~~~~~~~~lp~-~-----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~ 865 (992)
....+++-+...+.+.+ . ++.++|.+.|.+.. ++ ....+.+++|++|++.|+.||.+++++|+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~-~~----~~~~~~~~~ra~h~~~e~~rv~~~~~aL~ 370 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPN-TQ----DVLIFKLYQRAKHVYSEAARVLQFKKICE 370 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGG-GT----TCCCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccc-cc----cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222211 0 11122222222110 00 11224577899999999999999999998
Q ss_pred ccCChhHHHHHHHHHHHhhhhhhhc-CCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCccc
Q 001947 866 AAASDDQLTSLGELLYQCHYSYSAC-GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRS 944 (992)
Q Consensus 866 ~~~~~~d~~~lG~lm~~sH~slr~~-~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~ 944 (992)
+ ++++|++.||++|+++|.+||++ +||||++|+|++.+++ .|++|+||||||||||+++|++++. .
T Consensus 371 ~-~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-----------~Ga~GarltGAG~GG~viaLv~~~~-~ 437 (478)
T 2a2c_A 371 E-APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-----------FGAQGSRLTGAGWGGCTVSMVPADK-L 437 (478)
T ss_dssp H-CCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-----------TTCSEEEECTTCSSSEEEEEEEGGG-H
T ss_pred h-ccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-----------CCCcEEEeccCCCccEEEEEEcHHH-H
Confidence 7 11239999999999999999996 7999999999999987 6999999999999999998876543 4
Q ss_pred HHHHHHHHHHHHhhcC-----CCCeEEee-cCCCCcee
Q 001947 945 SEQVLEIQQRYKDATG-----YLPLIIEG-SSPGAGKF 976 (992)
Q Consensus 945 ~~~~~~i~~~y~~~~g-----~~~~~~~~-~~~Ga~~~ 976 (992)
+++++++.+.|+++++ ..+.+|.+ ++.||+++
T Consensus 438 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 438 PSFLANVHKAYYQRSDGSLAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp HHHHHHHHHHHHC---------CCSEEEECCBCCCEEE
T ss_pred HHHHHHHHHHHHHhcCccccCCCCcEEEEcCCCCeEee
Confidence 7899999999998875 35788887 78998776
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=8.7e-52 Score=480.87 Aligned_cols=382 Identities=24% Similarity=0.354 Sum_probs=307.2
Q ss_pred HHHHHHHHhccCCCCCceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCC
Q 001947 479 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 558 (992)
Q Consensus 479 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 558 (992)
...-+..|...||.++.+++++|||||||+|||+||+|+.+|++||++++++.+++++++++
T Consensus 31 ~~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i------------------ 92 (419)
T 1pie_A 31 LSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV------------------ 92 (419)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEE------------------
T ss_pred HHHHHHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEE------------------
Confidence 33445678899986444378999999999999999999999999999999999999876543
Q ss_pred CeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeC
Q 001947 559 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 638 (992)
Q Consensus 559 ~~i~i~s~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~ 638 (992)
++.+.+.+ . ....+++++++. ..+...|.||+++++..+ ++.|..+..|++|.|.|+
T Consensus 93 ---~i~~~~~~--~-~~~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l-~~~g~~~~~g~~i~i~s~ 149 (419)
T 1pie_A 93 ---KLYSENFP--K-LGVIEFDLDEVE----------------KKDGELWSNYVKGMIVML-KGAGYEIDKGFELLIKGE 149 (419)
T ss_dssp ---EEEETTCG--G-GCCEEEETTCTT----------------SCCTTCTHHHHHHHHHHH-HHTTCCCCSCEEEEEEEC
T ss_pred ---EEEECCCC--C-cceeEEeccccc----------------CCCCcCHHHHHHHHHHHH-HHhCCCCCCCEEEEEECC
Confidence 33332110 0 001223333210 012368999999988865 455555436999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeee
Q 001947 639 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 718 (992)
Q Consensus 639 iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v 718 (992)
||.|+|||||||++||++.|++.++|.++++++|+++|+.+|++++|.|||+|||+++++||.+.++++++++..+ +++
T Consensus 150 IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~l 228 (419)
T 1pie_A 150 IPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMV 228 (419)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCce-EEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999888889887665 788
Q ss_pred cCC-CCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHh
Q 001947 719 EIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 797 (992)
Q Consensus 719 ~~p-~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 797 (992)
++| +++.|+++++++++++..++||.||.+|...++++.+ ....+.|+
T Consensus 229 ~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~-------------------------------~~~v~~l~ 277 (419)
T 1pie_A 229 PVELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQT-------------------------------RLDIQSLG 277 (419)
T ss_dssp ECCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHH-------------------------------HCCCSSGG
T ss_pred ecCCCCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhh-------------------------------ccccCchh
Confidence 887 6899999999999999989999999988544433321 11133456
Q ss_pred cCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHH
Q 001947 798 NLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLG 877 (992)
Q Consensus 798 ~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG 877 (992)
+++++.+++. .+.+|+. ..++|+.|++.|+.|+.+++.+|+++ |++.||
T Consensus 278 ~~~~~~~~~~-~~~l~~~--------------------------~~~~~~~~~v~e~~r~~~~~~al~~~----d~~~lg 326 (419)
T 1pie_A 278 ELSNEEFDAN-TDLIGDE--------------------------TLIKRARHAVYENNRTKIAQKAFVAG----NLTKFG 326 (419)
T ss_dssp GCCHHHHHHT-GGGTCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHT----CHHHHH
T ss_pred hCCHHHHHHH-HhhcCcH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHH
Confidence 6666666543 1223211 14567899999999999999999986 999999
Q ss_pred HHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCC-CcccceeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001947 878 ELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDG-TLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 955 (992)
Q Consensus 878 ~lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~-g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 955 (992)
++|+++|.+|++ +++++|++|+|++.+++ . |++|+||||||||||+++|.+++. ++++++++.+.|
T Consensus 327 ~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~-----------~~Ga~ga~lsGaG~Gg~v~al~~~~~-a~~~~~~l~~~~ 394 (419)
T 1pie_A 327 ELLNASHASLKDDYEVTGLELDTLAETAQK-----------QAGVLGARMTGAGFGGCAIALVAHDN-VSAFRKAVGQVY 394 (419)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-----------STTEEEEEECSSCSSSEEEEEEEGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-----------cCCCceeeEecCCCCeEEEEEEchhh-HHHHHHHHHHHH
Confidence 999999999999 79999999999999987 4 999999999999999998876543 478999999999
Q ss_pred HhhcCCCCeEEee-cCCCCcee
Q 001947 956 KDATGYLPLIIEG-SSPGAGKF 976 (992)
Q Consensus 956 ~~~~g~~~~~~~~-~~~Ga~~~ 976 (992)
++++|..+.+|.+ ++.|++++
T Consensus 395 ~~~~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 395 EEVVGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHHSSCCEEEECCBCCCSBCC
T ss_pred HHhcCCCCeEEEEcCCCCeeec
Confidence 9889999999987 68888765
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.3e-49 Score=459.73 Aligned_cols=374 Identities=24% Similarity=0.342 Sum_probs=290.4
Q ss_pred HHHHHHHHhccCCCCCceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCC
Q 001947 479 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 558 (992)
Q Consensus 479 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 558 (992)
...-...|...||. +|.++++|||||||+|||+||+|+.+|++||++++++.+++++++++
T Consensus 20 ~~~~~~~f~~~~~~-~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i------------------ 80 (399)
T 1wuu_A 20 LAEARRAFREEFGA-EPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLV------------------ 80 (399)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEE------------------
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeE------------------
Confidence 44456788899986 55678999999999999999999999999999999999999876543
Q ss_pred CeEEEEecccccCCCC-CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEe
Q 001947 559 PVLQIVSYGSELSNRG-PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSS 637 (992)
Q Consensus 559 ~~i~i~s~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s 637 (992)
++.+.+.+ ... ..++++++++ +++ ...+...|.||+++++..+ .+..+ .|++|.|.|
T Consensus 81 ---~i~~~~~~--~~~~~~~~~~~~~~----~~~---------~~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~s 138 (399)
T 1wuu_A 81 ---SLLTTSEG--ADEPQRLQFPLPTA----QRS---------LEPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVS 138 (399)
T ss_dssp ---EEEECCSS--SCSCSEEEEECCCS----SCC---------CCCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEE
T ss_pred ---EEEECCCC--CccccceEEecCcc----ccc---------cccCCCCHHHHHHHHHHHh---cCCCC-CCeEEEEEC
Confidence 33333210 000 0012222210 000 0123467999999988764 34444 799999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceee
Q 001947 638 AVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 717 (992)
Q Consensus 638 ~iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~ 717 (992)
+||.|+|||||||++||++.|++.++|.++++++|+++|+.+|+.++|.|||+|||+++++||.+.++++++++..+ ++
T Consensus 139 ~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~ 217 (399)
T 1wuu_A 139 SVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SL 217 (399)
T ss_dssp CSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCce-EE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877655 67
Q ss_pred ecCC-CCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHH
Q 001947 718 VEIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYL 796 (992)
Q Consensus 718 v~~p-~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L 796 (992)
+++| +++.|++++++++++|....||.||.+|...++++. ...+
T Consensus 218 ~~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~-----------------------------------~~~l 262 (399)
T 1wuu_A 218 VPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALG-----------------------------------KESL 262 (399)
T ss_dssp EECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTT-----------------------------------CSST
T ss_pred ecCCCCCeEEEEEECCCccccccccHHHHHHHHHHHHHHhC-----------------------------------hhhh
Confidence 7877 489999999999999998899999988743333221 1123
Q ss_pred hcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHH
Q 001947 797 CNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSL 876 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~l 876 (992)
++++++.+.+.. +.+++ ..++|+.|++.|+.|+.+++.+|+++ |++.|
T Consensus 263 ~~~~~~~~~~~~-~~l~~---------------------------~~~~r~~~~~~e~~r~~~~~~al~~~----d~~~l 310 (399)
T 1wuu_A 263 REVQLEELEAAR-DLVSK---------------------------EGFRRARHVVGEIRRTAQAAAALRRG----DYRAF 310 (399)
T ss_dssp TSCCHHHHTTGG-GGSCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred hcCCHHHHHHHH-hhcCH---------------------------HHHHHHHHHHhhHHHHHHHHHHHHcC----CHHHH
Confidence 444444332211 11211 13567899999999999999999986 99999
Q ss_pred HHHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001947 877 GELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 955 (992)
Q Consensus 877 G~lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 955 (992)
|++|+++|++|++ +++++|++|+|++.+++. .|++|+||||||||||+++|.+++ +++++++++.+.|
T Consensus 311 g~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~----------~Ga~ga~~sGaG~Gg~v~~l~~~~-~~~~~~~~l~~~~ 379 (399)
T 1wuu_A 311 GRLMVESHRSLRDDYEVSCPELDQLVEAALAV----------PGVYGSRMTGGGFGGCTVTLLEAS-AAPHAMRHIQEHY 379 (399)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTS----------TTEEEEEECSSCSEEEEEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc----------CCceEEeeecCCCccEEEEEEccc-hHHHHHHHHHHHh
Confidence 9999999999997 799999999999998751 489999999999999999887653 2456777777666
Q ss_pred HhhcCCCCeEEee-cCCCCcee
Q 001947 956 KDATGYLPLIIEG-SSPGAGKF 976 (992)
Q Consensus 956 ~~~~g~~~~~~~~-~~~Ga~~~ 976 (992)
|..+.+|.+ +++|++++
T Consensus 380 ----~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 380 ----GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp ----SSCCEEEEECCCCCSEEC
T ss_pred ----CCCCcEEEEcCCCCeeec
Confidence 778889887 68888764
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=2.2e-47 Score=433.99 Aligned_cols=347 Identities=22% Similarity=0.353 Sum_probs=277.9
Q ss_pred EEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001947 497 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 576 (992)
Q Consensus 497 ~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 576 (992)
++++|||||||+|||+||+|+.+|++||++++++.+++++++++++.. .+ .. ..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~---------------------~~--~~---~~ 55 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEH---------------------FG--EE---RK 55 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETT---------------------TT--EE---EE
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEE---------------------CC--CC---cc
Confidence 578999999999999999999999999999999999988765443321 10 00 00
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001947 577 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 656 (992)
Q Consensus 577 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 656 (992)
.++ ++. .+...|.||+++++.. +++.+... .|++|.|.|+||.++|||||||++||++
T Consensus 56 ~~~-l~~-------------------~~~~~~~~~~~~~~~~-l~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~~ 113 (350)
T 2cz9_A 56 FSL-NDL-------------------RKENSWIDYVKGIFWV-LKESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGIL 113 (350)
T ss_dssp ECT-TCC-------------------CCCSSTHHHHHHHHHH-HHHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHHH
T ss_pred ccc-cCC-------------------CCCCcHHHHHHHHHHH-HHhcCCCC-CCeEEEEECCCCCCCCcchHHHHHHHHH
Confidence 011 100 1236799999887765 45666654 7999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEeCCCccc
Q 001947 657 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 736 (992)
Q Consensus 657 ~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~dsgi~~~ 736 (992)
.|++.++|.++++++|+++|+.+|++++|+|+|++|++++.+|+.+.++++|+++..+ +++++|+++++++++++++|+
T Consensus 114 ~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~~ 192 (350)
T 2cz9_A 114 ETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRRE 192 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC--
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcE-EEEcCCCCcEEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999998899999887655 788888899999999999998
Q ss_pred cCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCccc
Q 001947 737 VGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESI 816 (992)
Q Consensus 737 ~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i 816 (992)
+....|+.||.+|...+++++ .+.||++.++++ ..+|+.
T Consensus 193 ~~t~~~~~r~~~~~~a~~~~~-----------------------------------~~~lr~~~~~~~-----~~l~~~- 231 (350)
T 2cz9_A 193 LASSEYAERKHIAEESLKILG-----------------------------------KGSSKEVREGEL-----SKLPPL- 231 (350)
T ss_dssp --CHHHHHHHHHHHHHHHHHT-----------------------------------CSCGGGCCGGGG-----GGSCHH-
T ss_pred cccchHHHHHHHHHHHHHHhC-----------------------------------hhhhhhCCHHHH-----hhCCHH-
Confidence 777779999888743332221 122344333222 112211
Q ss_pred hhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhh-cCCCCc
Q 001947 817 VGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-CGLGSD 895 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~-~~vs~~ 895 (992)
++++..|++.|+.|+.+++.+|+++ |++.||++|+++|.+|++ +++++|
T Consensus 232 --------------------------~~~~~~~~~~~~~~~~~~~~al~~~----d~~~lg~~~~~~~~~l~~~~~~~~p 281 (350)
T 2cz9_A 232 --------------------------HRKFFGYIVRENARVLEVRDALKEG----NVEEVGKILTTAHWDLAKNYEVSCK 281 (350)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred --------------------------HHHHHHHHhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 2346789999999999999999986 999999999999999998 799999
Q ss_pred hHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCeEEee-cCCCCc
Q 001947 896 GTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-SSPGAG 974 (992)
Q Consensus 896 ~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-~~~Ga~ 974 (992)
++|++++.+++ .|++|+||||+|||||+++|.+++ +++++++++.+.|++.+|+.+.+|.+ +++|++
T Consensus 282 ~l~~l~~~~~~-----------~Ga~ga~lsGaG~G~~v~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ga~ 349 (350)
T 2cz9_A 282 ELDFFVERALK-----------LGAYGARLTGAGFGGSAIALVDKE-DAETIGEEILREYLKRFPWKARHFIVEPSDGVG 349 (350)
T ss_dssp HHHHHHHHHHH-----------TTCSEEEECSSCSSSEEEEEEEGG-GHHHHHHHHHHHHHHHCCSCCEEEEECEECCSB
T ss_pred HHHHHHHHHHH-----------cCCCEEEEecCCCceEEEEEEchh-hHHHHHHHHHHHHHHhhCCCCcEEEecCCCCCC
Confidence 99999999987 689999999999999999887654 34689999999999888999999987 588876
Q ss_pred e
Q 001947 975 K 975 (992)
Q Consensus 975 ~ 975 (992)
+
T Consensus 350 ~ 350 (350)
T 2cz9_A 350 I 350 (350)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-46 Score=424.34 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=227.0
Q ss_pred eEEEEcCcccccccccccc------CCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccc
Q 001947 496 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 569 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy------~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 569 (992)
+++++|||||||+|||+|| +||+||++||++++++++++++|+++++ .|.+
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i---------------------~s~~-- 59 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEI---------------------NAYD-- 59 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEE---------------------EETT--
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEE---------------------EECC--
Confidence 3678999999999999999 8999999999999999999998866544 3321
Q ss_pred cCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHH
Q 001947 570 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 649 (992)
Q Consensus 570 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 649 (992)
+.. ..++++++ + .+...|.||+++++..+. +.+.....|++|.+.|+||.|+||||||
T Consensus 60 ~~~---~~~~~~~~------~------------~~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 60 AQC---CKSYLSMS------Q------------LEIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp TTE---EEEEECCS------S------------CCCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred CCc---eEEEeccc------c------------ccccchHHHHHHHHHHHH-HhcCCCCCCEEEEEecCCCCCCCchHHH
Confidence 100 11223222 0 123689999999999764 4443212799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCC------
Q 001947 650 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 723 (992)
Q Consensus 650 A~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~------ 723 (992)
|++||++.|++.+++.++++++|+++|+++|+.++|.|||+|||+++++||.+.+.+.++++..+ +++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeE-EEEecChhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999987766655555444 56777643
Q ss_pred eEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHH
Q 001947 724 IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHR 803 (992)
Q Consensus 724 ~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~ 803 (992)
+.++|++|+.+|++.. ++.++. +.+
T Consensus 197 ~~lvi~~t~~~~~a~~---------------~l~~~~---------------------------------~~~------- 221 (357)
T 3k85_A 197 SSMVLYFTGRSRSSAA---------------IINEQK---------------------------------KNT------- 221 (357)
T ss_dssp HTEEEECC------------------------------------------------------------------------
T ss_pred ceEEEEECCCcccHHH---------------HHHHHH---------------------------------HHh-------
Confidence 6899999999887531 111100 000
Q ss_pred HHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 001947 804 FEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQC 883 (992)
Q Consensus 804 ~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~s 883 (992)
+..++ ...|+.|.+.| |+.+++++|+++ |++.||++|+++
T Consensus 222 ------~~~~~----------------------------~~~~~~~~i~~--~~~~~~~aL~~~----d~~~lg~lm~~~ 261 (357)
T 3k85_A 222 ------SEGNQ----------------------------TAIEAMHKIKQ--SAIDTKLALLKG----DVGEFARILGEG 261 (357)
T ss_dssp ----------C----------------------------CTTHHHHHHHH--HHHHHHHHHTTT----CHHHHHHHHHHH
T ss_pred ------hcCcH----------------------------HHHHHHHHHHH--HHHHHHHHHHcC----CHHHHHHHHHHH
Confidence 00000 12356677765 788999999986 999999999999
Q ss_pred hhhhhh--cCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCC
Q 001947 884 HYSYSA--CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGY 961 (992)
Q Consensus 884 H~slr~--~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~ 961 (992)
|.++++ ++||+|++|+|++.+++ .|++|+||||||+|||++++.+++. .+++.++.+ +.|.
T Consensus 262 ~~~l~~~~~~vs~p~ld~l~~~a~~-----------~Ga~GaklsGaG~gG~vial~~~~~-----~~~~~~~l~-~~g~ 324 (357)
T 3k85_A 262 WENKKKMAGAITNPMIQEAFDVATG-----------AGAMAGKVSGAGGGGFIMFVVEPTR-----KEEVVRALN-NLNG 324 (357)
T ss_dssp HHHTTC-----------CCSCTTTT-----------SCCSEEEECCCC---CEEEECCHHH-----HHHHHHHHH-TSSS
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHh-----------cCCeEeEecccCCCCEEEEEecHHH-----HHHHHHHHH-HCCC
Confidence 999997 59999999999998876 6999999999999999998876421 234444443 3355
Q ss_pred CCeEEeecCCCCce
Q 001947 962 LPLIIEGSSPGAGK 975 (992)
Q Consensus 962 ~~~~~~~~~~Ga~~ 975 (992)
....+.....|+++
T Consensus 325 ~~~~~~~~~~G~~v 338 (357)
T 3k85_A 325 FVMPFQFIDDGAHG 338 (357)
T ss_dssp CBCCCCBCCCCCEE
T ss_pred eEEEeEEcCCceEE
Confidence 44444446788776
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=1.5e-42 Score=400.41 Aligned_cols=342 Identities=19% Similarity=0.202 Sum_probs=241.0
Q ss_pred eEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 001947 496 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 575 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 575 (992)
.++++|||||+|+|||+||+|++||++||++++++.+++++++++++.+ .+.. .
T Consensus 5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~---------------------~~~~-----~ 58 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNL---------------------PNVG-----I 58 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEE---------------------TTTT-----E
T ss_pred cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEc---------------------CCCC-----c
Confidence 5789999999999999999999999999999999999999876654432 1100 0
Q ss_pred ceeccCCccccC----CCCc---chh-hhhcccC-CCCCCchHHHH-----HHHHHHHHHHhCCC-CCCCEEEEEEeCCC
Q 001947 576 TFDMDLSDFMDE----GKPM---SYE-KAKKYFD-TNPSQKWAAYV-----AGTILVLMTELGVR-FEDSISMLVSSAVP 640 (992)
Q Consensus 576 ~~~~~l~~l~~~----~~~~---~~~-~~~~~~~-~~~~~~w~nyv-----~~~i~~~~~~~g~~-~~~g~~i~i~s~iP 640 (992)
.++++++++... +.|. ... +.-..+. .....+|.||+ ..++..+.+..+.. ...|++|.|.|+||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP 138 (395)
T 1kvk_A 59 KQVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELP 138 (395)
T ss_dssp EEEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSC
T ss_pred eEEEEhHhhhhhhcccccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCC
Confidence 012222221100 0000 000 0000000 00124799994 33333233233441 12699999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHhccccCCCCCccchhhhhccCcceEE
Q 001947 641 EGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLL 705 (992)
Q Consensus 641 ~g~GLgSSAA~~va~~~al~~~~~~-----~l~-------~---~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~ 705 (992)
.|+|||||||++||++.|++.+++. +++ + .+|+++|+.+|+.++|.|||+ ||+++++||. +
T Consensus 139 ~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~---~ 214 (395)
T 1kvk_A 139 PGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA---L 214 (395)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---E
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---E
Confidence 9999999999999999999999999 788 7 456666889999999999997 9999999984 4
Q ss_pred EEeecCccceeeecCCCCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhh
Q 001947 706 AMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVE 785 (992)
Q Consensus 706 ~~~~~~~~~~~~v~~p~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 785 (992)
++ ++..+ ++++++++++|++++++++++|.. +++.+ +
T Consensus 215 ~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~~---------------~~~~~-------------------------~ 251 (395)
T 1kvk_A 215 RY--QQGKM-SSLKRLPALQILLTNTKVPRSTKA---------------LVAGV-------------------------R 251 (395)
T ss_dssp EE--SSSCE-EECSCCCCEEEEEEECCCCCCHHH---------------HHHHH-------------------------H
T ss_pred EE--cCCCc-eeccCCCCcEEEEEECCCCCchHH---------------HHHHH-------------------------H
Confidence 44 34444 677766789999999999988742 11111 0
Q ss_pred HHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHH-HHHH
Q 001947 786 LLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAF-KALL 864 (992)
Q Consensus 786 ~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~-~~~l 864 (992)
.+.+..++.++. +++++.|++.|+.|+... ..+|
T Consensus 252 ---------~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~l~~~~~al 286 (395)
T 1kvk_A 252 ---------SRLIKFPEIMAP------------------------------------LLTSIDAISLECERVLGEMAAAP 286 (395)
T ss_dssp ---------HHHHHSHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------HHHHHCHHHHHH------------------------------------HHHHHHHHHHHHHHHHHhhhccc
Confidence 000000111100 234678899999887766 5666
Q ss_pred hccCChhHHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCccc
Q 001947 865 TAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRS 944 (992)
Q Consensus 865 ~~~~~~~d~~~lG~lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~ 944 (992)
+++ |++.||++|+++|.+|+++++++|++|+|++.+++ .|+ |+||||||||||++++.+++. .
T Consensus 287 ~~~----d~~~lg~lm~~~~~~l~~~~~~~p~l~~l~~~a~~-----------~Ga-ga~~sGaG~Gg~v~~l~~~~~-~ 349 (395)
T 1kvk_A 287 VPE----QYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAA-----------HGL-HSKLTGAGGGGCGITLLKPGL-E 349 (395)
T ss_dssp CHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-----------TTC-EEEECSSCSSSEEEEEECTTC-C
T ss_pred cHH----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----------cCC-ceeeccCCCCCEEEEEecCCC-C
Confidence 664 99999999999999999999999999999999987 588 999999999999998876543 3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEee--cCCCCce
Q 001947 945 SEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 975 (992)
Q Consensus 945 ~~~~~~i~~~y~~~~g~~~~~~~~--~~~Ga~~ 975 (992)
+++++++.+.|++. |+. +|.. .+.|+++
T Consensus 350 ~~~~~~~~~~~~~~-g~~--~~~~~~~~~G~~v 379 (395)
T 1kvk_A 350 RAKVEAAKQALTGC-GFD--CWETSIGAPGVSM 379 (395)
T ss_dssp HHHHHHHHHHHHHT-TCE--EEEEEESCCCSEE
T ss_pred HHHHHHHHHHHHHc-CCE--EEEEecCCCcEEE
Confidence 57888998888854 543 5554 5778754
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=2.2e-41 Score=384.73 Aligned_cols=303 Identities=15% Similarity=0.161 Sum_probs=230.0
Q ss_pred eEEEEcCccccccccccccC-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001947 496 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 574 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy~-gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 574 (992)
+++++|||||+|+|||+||+ ||+||++||+++++++++++++.. |.|.. +..
T Consensus 6 ~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~--~~~-- 58 (365)
T 3k17_A 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPH--YEN-- 58 (365)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTT--CSS--
T ss_pred EEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCcE-----------------------EEecC--CCc--
Confidence 67899999999999999995 999999999999999999997642 22221 100
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCC----CCCCch
Q 001947 575 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGVSS 647 (992)
Q Consensus 575 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~---~~g~~~~~g~~i~i~s~iP~----g~GLgS 647 (992)
.+++++++. + ..+...| ||+++++..+.+ +.|.+. .|++|.|.|+||. ++||||
T Consensus 59 -~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLgS 119 (365)
T 3k17_A 59 -PVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLGS 119 (365)
T ss_dssp -CBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSCH
T ss_pred -ceeeecccC------C----------CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCcccH
Confidence 122332210 0 0123456 999999987543 456665 7999999999996 579999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEe-ec----------------
Q 001947 648 SASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ---------------- 710 (992)
Q Consensus 648 SAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~-~~---------------- 710 (992)
|||++||++.|++.+++.++++++|+++|+.+|+.++|.++| |||+++++||. +++. +.
T Consensus 120 Saa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g-~D~~~~~~Gg~---~~~~~~~~~~~~~~~~~~~l~~l 195 (365)
T 3k17_A 120 SAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSC-GDIASCMYGGW---IAYTTFDQEWVKHRLAYKSLEWF 195 (365)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSE---EEEECCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCc-ccHHHHhcCCE---EEEecCCHHHhhhhcccchhhhh
Confidence 999999999999999999999999999999999999995555 99999999994 4443 11
Q ss_pred ------CccceeeecCCCCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhh
Q 001947 711 ------PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGV 784 (992)
Q Consensus 711 ------~~~~~~~v~~p~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 784 (992)
+..+ +++++|.+ +++++|||++++|.. +++.+
T Consensus 196 ~~~~w~~~~~-~~l~~~~~-~lll~~t~~~~sT~~---------------~~~~v------------------------- 233 (365)
T 3k17_A 196 MKEPWPMLQI-ETLEEPVP-TFSVGWTGTPVSTGK---------------LVSQI------------------------- 233 (365)
T ss_dssp HHSCCTTCEE-EEECCCSS-EEEEEECSCCCCHHH---------------HHHHH-------------------------
T ss_pred hccCCCCcce-eeccCCcc-cEEEEECCCccchHH---------------HHHHH-------------------------
Confidence 2223 56777778 999999999998742 22111
Q ss_pred hHHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhh-hHHHHHHHH
Q 001947 785 ELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYEN-FRVKAFKAL 863 (992)
Q Consensus 785 ~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~-~Rv~~~~~~ 863 (992)
..+++ ..| .+.+|++.|+ .++.+++++
T Consensus 234 ---------~~~~~------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~a 261 (365)
T 3k17_A 234 ---------HAFKQ------------EDS-------------------------------KNYQHFLTRNNEIMKQIIQA 261 (365)
T ss_dssp ---------HHHHH------------HCH-------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHH------------hCh-------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 01111 001 0135667774 467899999
Q ss_pred HhccCChhHHHHHHHHHHHhhhhhhhcCC------CCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEE
Q 001947 864 LTAAASDDQLTSLGELLYQCHYSYSACGL------GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVI 937 (992)
Q Consensus 864 l~~~~~~~d~~~lG~lm~~sH~slr~~~v------s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l 937 (992)
|+++ |++.||++|+++|.+||++++ ++|++|+|++.+++ .|++ +||||||||||+++|
T Consensus 262 L~~g----d~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~-----------~Ga~-ak~sGAGgGg~vial 325 (365)
T 3k17_A 262 FHTK----DEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAEN-----------MGGA-GKSSGSGGGDCGIAF 325 (365)
T ss_dssp HHHT----CHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHH-----------TTSE-EEECTTCSSSEEEEE
T ss_pred HHhC----CHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHh-----------cCCE-EEecCCCCCCEEEEE
Confidence 9986 999999999999999999876 99999999999988 5777 999999999999998
Q ss_pred ccCCcccHHHHHHHHHHHHhhcCCCC
Q 001947 938 GRNSLRSSEQVLEIQQRYKDATGYLP 963 (992)
Q Consensus 938 ~~~~~~~~~~~~~i~~~y~~~~g~~~ 963 (992)
.++. +.++++.++++ +.|+.+
T Consensus 326 ~~~~----~~~~~l~~~l~-~~g~~~ 346 (365)
T 3k17_A 326 SKTK----ELAEKLVNEWE-KLGIKH 346 (365)
T ss_dssp ESSH----HHHHHHHHHHH-HTTCEE
T ss_pred ECCH----HHHHHHHHHHH-HCCCEE
Confidence 8653 24566777776 445543
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=3.6e-41 Score=380.26 Aligned_cols=296 Identities=15% Similarity=0.058 Sum_probs=221.3
Q ss_pred eEEEEcCccccccccccccC-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001947 496 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 574 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy~-gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 574 (992)
++.++|||||+|+|||++++ |+++|++||++++++.++++++.++ .+..
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~i-----------------------~~~~------- 50 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRI-----------------------YSDM------- 50 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEE-----------------------EETT-------
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCEE-----------------------EEeC-------
Confidence 36789999999999999987 9999999999999999999876432 2211
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC---CCCchHHHH
Q 001947 575 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG---KGVSSSASV 651 (992)
Q Consensus 575 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g---~GLgSSAA~ 651 (992)
++..++.. . .....-|.+++..+.. ++++.+..+ +|+++.|.|++|.+ +|||||||+
T Consensus 51 --~~~~~~~~--------~--------~~~~~~~~~~i~~~~~-~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLgSSaa~ 110 (335)
T 3gon_A 51 --FDFAVDLR--------P--------NPDYSLIQETIALMGD-FLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSSGSV 110 (335)
T ss_dssp --SSSCBCSS--------C--------CTTTHHHHHHHHHHHH-HHHHTTCCC-CCEEEEEECCSEETTEECSSCHHHHH
T ss_pred --CCcccccC--------c--------CCCcHHHHHHHHHHHH-HHHHcCCCC-CceEEEEEecCCcccCCCCcchHHHH
Confidence 11111100 0 0011123444444333 456778776 89999999999987 599999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCcc------------------
Q 001947 652 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE------------------ 713 (992)
Q Consensus 652 ~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~------------------ 713 (992)
+||++.|++.+++.++++++++++|+.+|+.++|.+|| |||+++++||. +++...+..
T Consensus 111 ~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~---i~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (335)
T 3gon_A 111 VVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL---VLYQSFDRQKVAAWLEEENLATVLERD 186 (335)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC---EEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe---EEEEeCCccccceeecccchhheeccc
Confidence 99999999999999999999999999999999999999 89999999996 333322110
Q ss_pred ---ceeeecCCCCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHh
Q 001947 714 ---LLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAE 790 (992)
Q Consensus 714 ---~~~~v~~p~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 790 (992)
....++.+..+.+++++++.+++|.. +++.+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~~---------------~v~~v~------------------------------ 221 (335)
T 3gon_A 187 WGFSISQVKPTLECDFLVGWTKEVAVSSH---------------MVQQIK------------------------------ 221 (335)
T ss_dssp CCCEEEECCCCSCCEEEEEECCCCCCHHH---------------HHHHHG------------------------------
T ss_pred ccceeEEcCCccccceEEeecCChhhHHH---------------HHHHHH------------------------------
Confidence 11345556788999999998876531 222110
Q ss_pred hhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCCh
Q 001947 791 ASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASD 870 (992)
Q Consensus 791 ~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~ 870 (992)
+.. ...++...+.+|.+++.+|+++
T Consensus 222 -------------------~~~---------------------------------~~~~~~~~~~~~~~~~~aL~~~--- 246 (335)
T 3gon_A 222 -------------------QNI---------------------------------NQNFLTSSKETVVSLVEALEQG--- 246 (335)
T ss_dssp -------------------GGC---------------------------------CHHHHHHHHHHHHHHHHHHHHT---
T ss_pred -------------------HHh---------------------------------HHHHHHHHHHHHHHHHHHHHhC---
Confidence 000 0112233456788999999986
Q ss_pred hHHHHHHHHHHHhhhhhhhc--CCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHH
Q 001947 871 DQLTSLGELLYQCHYSYSAC--GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQV 948 (992)
Q Consensus 871 ~d~~~lG~lm~~sH~slr~~--~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~ 948 (992)
|++.||+||+++|.+|+++ ++++|++|.|++.+++ .|+ ||||||||||||+++|++++ +..
T Consensus 247 -d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-----------~g~-~akltGAG~Ggc~ial~~~~----~~~ 309 (335)
T 3gon_A 247 -KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-----------LQA-VAKSSGAGGGDCGIALSFDA----QST 309 (335)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-----------SSE-EEEECTTCSSSEEEEEECSH----HHH
T ss_pred -cHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-----------CCc-EEEEccccchheEEEEECCH----HHH
Confidence 9999999999999999994 7899999999999876 564 89999999999999998753 345
Q ss_pred HHHHHHHHhhcCCCC
Q 001947 949 LEIQQRYKDATGYLP 963 (992)
Q Consensus 949 ~~i~~~y~~~~g~~~ 963 (992)
++|.++++ +.|+++
T Consensus 310 ~~i~~~~~-~~Gi~~ 323 (335)
T 3gon_A 310 KTLKNRWA-DLGIEL 323 (335)
T ss_dssp HHHHHHHH-HTTCEE
T ss_pred HHHHHHHH-HCCCcE
Confidence 67777776 447765
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=8.4e-40 Score=368.51 Aligned_cols=295 Identities=17% Similarity=0.121 Sum_probs=222.9
Q ss_pred eEEEEcCcccccccccc-ccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001947 496 IFVARAPGRLDVMGGIA-DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 574 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~-dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 574 (992)
.+.++|||||+|+|||+ ||+|++||++||++++++.++++++ + +|.|..
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~---------------------~i~s~~------- 52 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--Y---------------------RIYSDM------- 52 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--C---------------------EEEETT-------
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--E---------------------EEecCC-------
Confidence 35789999999999999 6779999999999999999998753 2 233321
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHH---hCCCCCCCEEEEEEeCCCCC---CCCchH
Q 001947 575 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTE---LGVRFEDSISMLVSSAVPEG---KGVSSS 648 (992)
Q Consensus 575 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~---~g~~~~~g~~i~i~s~iP~g---~GLgSS 648 (992)
+...++ ..+..+| ||+++++..+.+. .|... .|+++.|.|+||.+ +|||||
T Consensus 53 --~~~~~~-------------------~~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgSS 109 (337)
T 2pg9_A 53 --FDFAVD-------------------LRPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSS 109 (337)
T ss_dssp --SSSCBC-------------------SSCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCHH
T ss_pred --CCceee-------------------ecCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCCCCCCccccHH
Confidence 110110 0123467 8999998876543 35555 79999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeec------------------
Q 001947 649 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ------------------ 710 (992)
Q Consensus 649 AA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~------------------ 710 (992)
||++||++.|++.+++.++++++++++|+.+|++ .|.++|.+|++++++||......+++.
T Consensus 110 aa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~-~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (337)
T 2pg9_A 110 GSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLK-RGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERD 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccc
Confidence 9999999999999999999999999999999965 566667799999999996432212321
Q ss_pred -CccceeeecCCCCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHH
Q 001947 711 -PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEA 789 (992)
Q Consensus 711 -~~~~~~~v~~p~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 789 (992)
+..+ +++++|.+++|++++|+++++|.. +++.+.
T Consensus 189 ~~~~~-~~l~~~~~~~lvl~~~~~~~~T~~---------------~~~~~~----------------------------- 223 (337)
T 2pg9_A 189 WGFSI-SQVKPTLECDFLVGWTKEVAVSSH---------------MVQQIK----------------------------- 223 (337)
T ss_dssp CCCEE-EECCCCSCCEEEEEECCCCCCHHH---------------HHHHHG-----------------------------
T ss_pred cccce-eeecCCCCceEEEEECCCccchHH---------------HHHHHH-----------------------------
Confidence 1123 566777789999999999988642 111110
Q ss_pred hhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchh-hhHHHHHHHHHhccC
Q 001947 790 EASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYE-NFRVKAFKALLTAAA 868 (992)
Q Consensus 790 ~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E-~~Rv~~~~~~l~~~~ 868 (992)
..++ .+.+.+ +.++.+++.+|.++
T Consensus 224 -----~~~~-------------------------------------------------~~~~~~~~~~~~~~~~aL~~~- 248 (337)
T 2pg9_A 224 -----QNIN-------------------------------------------------QNFLTSSKETVVSLVEALEQG- 248 (337)
T ss_dssp -----GGCC-------------------------------------------------HHHHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHHH-------------------------------------------------HHHHHHHHHHHHHHHHHHHcC-
Confidence 0000 001111 34677899999886
Q ss_pred ChhHHHHHHHHHHHhhhhhhhcC--CCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHH
Q 001947 869 SDDQLTSLGELLYQCHYSYSACG--LGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSE 946 (992)
Q Consensus 869 ~~~d~~~lG~lm~~sH~slr~~~--vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~ 946 (992)
|++.||++|+++|.++++++ +++|++|+|++.+++ .|++ +||||||||||+++|.++. +
T Consensus 249 ---d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-----------~Ga~-ak~sGaGgGg~vial~~~~----~ 309 (337)
T 2pg9_A 249 ---KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-----------LQAV-AKSSGAGGGDCGIALSFDA----Q 309 (337)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-----------SSEE-EEECTTCSSSEEEEEECSH----H
T ss_pred ---CHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-----------CCCE-EEEeCCCCccEEEEEECCH----H
Confidence 99999999999999999986 999999999998876 6889 9999999999999888653 2
Q ss_pred HHHHHHHHHHhhcCCCCe
Q 001947 947 QVLEIQQRYKDATGYLPL 964 (992)
Q Consensus 947 ~~~~i~~~y~~~~g~~~~ 964 (992)
.++++.++++ +.|+.+.
T Consensus 310 ~~~~~~~~l~-~~g~~~~ 326 (337)
T 2pg9_A 310 STKTLKNRWA-DLGIELL 326 (337)
T ss_dssp HHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHH-HCCCEEE
Confidence 3456666665 4576653
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=5.1e-37 Score=342.40 Aligned_cols=290 Identities=18% Similarity=0.272 Sum_probs=217.2
Q ss_pred eEEEEcCccccccccccccCCCeeeccccccc-eEEEEEecCcch-hhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001947 496 IFVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSK-QRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 573 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~-~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 573 (992)
...++|||||||+|||+||+|+.+|+++|+.. +++.++++++++ + .+.+..
T Consensus 6 ~~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i---------------------~~~~~~------ 58 (308)
T 2x7i_A 6 KGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYS---------------------SIKSDV------ 58 (308)
T ss_dssp EEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCC---------------------EEEEEE------
T ss_pred ceEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCee---------------------EEEecC------
Confidence 46789999999999999999999999999985 889999876543 2 222110
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHH
Q 001947 574 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 653 (992)
Q Consensus 574 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~v 653 (992)
++.++ ....+|.|++++++..+.+ .. .|++|.+.|+||.++|||||||+++
T Consensus 59 ---~~~~~---------------------~~~~~~~~~v~~~~~~~~~----~~-~g~~i~i~~~iP~g~GLGSSsa~~~ 109 (308)
T 2x7i_A 59 ---YDGML---------------------YDAPDHLKSLVNRFVELNN----IT-EPLAVTIQTNLPPSRGLGSSAAVAV 109 (308)
T ss_dssp ---CSSCC---------------------CCTTSCHHHHHHHHHHHTT----CC-SCEEEEEEECCCTTSSSCHHHHHHH
T ss_pred ---CCCCh---------------------hhhhHHHHHHHHHHHHHHh----hC-CCeEEEEeccCCCCCCccHHHHHHH
Confidence 10011 0113689999998875432 23 5999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEeCCC
Q 001947 654 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 733 (992)
Q Consensus 654 a~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~dsgi 733 (992)
|++.|++.+++.++++++|+++|+.+|+.++|.|||+ |+.++.+||. ++++ +.... ++++++.++.++++++++
T Consensus 110 a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g~~---~~~~-~g~~~-~~~~~~~~~~~vi~~~~~ 183 (308)
T 2x7i_A 110 AFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSGKP---VWFQ-KGHAE-TLKTLSLDGYMVVIDTGV 183 (308)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHTSC---EEEE-TTEEE-ECSCCCBSSEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCCce---EEEE-cCCCc-eEeccCCCceEEEEECcC
Confidence 9999999999999999999999999999999999995 9999999884 5555 33332 566666688999999999
Q ss_pred ccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCC
Q 001947 734 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 813 (992)
Q Consensus 734 ~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 813 (992)
+++|.. .|+. +.. .....+.
T Consensus 184 ~~sT~~-~~~~-----------l~~-------------------------------------~~~~~~~----------- 203 (308)
T 2x7i_A 184 KGSTRQ-AVHD-----------VHK-------------------------------------LCEDPQY----------- 203 (308)
T ss_dssp --CCSC-CCC--------------------------------------------------------CCH-----------
T ss_pred CCCHHH-HHHH-----------HHH-------------------------------------HHhcCch-----------
Confidence 988753 1110 000 0000000
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhhcCCC
Q 001947 814 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG 893 (992)
Q Consensus 814 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~~~vs 893 (992)
+++ ..|+ ..++.++..+|+++ |++.||++|+++|.++++++++
T Consensus 204 -----------------------------~~~-~~~~---~~~~~~~~~al~~~----d~~~l~~~~~~~~~~~~~~~~~ 246 (308)
T 2x7i_A 204 -----------------------------MSH-VKHI---GKLVLRASDVIEHH----KFEALADIFNECHADLKALTVS 246 (308)
T ss_dssp -----------------------------HHH-HHHH---HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----------------------------HHH-HHHH---HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCCC
Confidence 000 1121 23677888899886 9999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001947 894 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 955 (992)
Q Consensus 894 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 955 (992)
+|++|++++.+++ .|++|+||||+|+|||++++.++..+++++.+++.+.|
T Consensus 247 ~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 247 HDKIEQLMKIGKE-----------NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp CHHHHHHHHHHHH-----------TTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH-----------CCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 9999999999987 68999999999999999988765222345555555444
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=4.3e-36 Score=336.14 Aligned_cols=306 Identities=20% Similarity=0.263 Sum_probs=219.0
Q ss_pred ccCCCCCceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecc
Q 001947 488 GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYG 567 (992)
Q Consensus 488 ~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~ 567 (992)
++....+.++.++|||||||+|||+||+||.+|++||++++++.++++++ ++ |.+..
T Consensus 13 ~~~~~~~~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~---------------------i~~~~ 69 (321)
T 4hac_A 13 GLVPRGSHMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--IT---------------------IQSQI 69 (321)
T ss_dssp SCCCCSCCCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EE---------------------EEETT
T ss_pred CCcCCCCCEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EE---------------------EEECC
Confidence 44444466788999999999999999999999999999999999997542 32 32211
Q ss_pred cccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCch
Q 001947 568 SELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSS 647 (992)
Q Consensus 568 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgS 647 (992)
+. ..+ . ....+|.+++..+ +++++ . ..|++|.|.|+||.++||||
T Consensus 70 ---------~~---~~~-------~----------~~~~~~~~~~~~~----l~~~~-~-~~g~~i~i~~~iP~g~GLGS 114 (321)
T 4hac_A 70 ---------GR---TGL-------D----------FEKHPYVSAVIEK----MRKSI-P-INGVFLTVDSDIPVGSGLGS 114 (321)
T ss_dssp ---------EE---ESS-------C----------TTTSHHHHHHHHH----HTTTS-C-CCCEEEEEEECCCSCTTCCH
T ss_pred ---------CC---ccc-------c----------cchhHHHHHHHHH----HHHhC-C-CCCEEEEEECCCCCCCCccH
Confidence 00 000 0 0113555554433 34455 3 27999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEE
Q 001947 648 SASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFW 727 (992)
Q Consensus 648 SAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~v 727 (992)
|||+++|++.|++.+++.++++++|+++|+++|+.++|.++ .+|++++++||. +++ . .. +.+.+| +++++
T Consensus 115 Ssa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~~D~~~~~~Gg~---~~~-~-~~---~~l~~p-~~~~v 184 (321)
T 4hac_A 115 SAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAAS-PTDTYVSTFGGV---VTI-P-ER---RKLKTP-DCGIV 184 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCC-SHHHHHHHHCSE---EEE-T-TC---CEECCC-CCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHcCCe---EEE-c-CC---ceeccC-CCEEE
Confidence 99999999999999999999999999999999999999954 589999999993 444 2 21 234466 89999
Q ss_pred EEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHH
Q 001947 728 GIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEAL 807 (992)
Q Consensus 728 l~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~ 807 (992)
+++++++++|.. +.+.+ +.+++..++.+...
T Consensus 185 lv~p~~~~sT~~---------------~~~~~----------------------------------~~l~~~~~~~~~~~ 215 (321)
T 4hac_A 185 IGDTGVFSSTKE---------------LVANV----------------------------------RQLRESYPDLIEPL 215 (321)
T ss_dssp EEECCCCCCHHH---------------HHHHH----------------------------------HHHHHHCHHHHHHH
T ss_pred EEECCCCccHHH---------------HHHHH----------------------------------HHHHhcCHHHHHHH
Confidence 999999988742 11110 01111111111110
Q ss_pred HhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 001947 808 YAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSY 887 (992)
Q Consensus 808 ~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~sl 887 (992)
+ +.+. ..+.++..+|.++ |++.||++|+++|..+
T Consensus 216 ~----------------------------------------~~~~--~~~~~~~~al~~~----d~~~lg~~~~~~~~~~ 249 (321)
T 4hac_A 216 M----------------------------------------TSIG--KISRIGEQLVLSG----DYASIGRLMNVNQGLL 249 (321)
T ss_dssp H----------------------------------------HHHH--HHHHHHHHHHHHT----CHHHHHHHHHHHHHHH
T ss_pred H----------------------------------------HHHH--HHHHHHHHHHHhC----CHHHHHHHHHHHHHHH
Confidence 0 0011 1245677888886 9999999999999888
Q ss_pred hhcCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCeEEe
Q 001947 888 SACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIE 967 (992)
Q Consensus 888 r~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~ 967 (992)
+++++++|++|++++.+++ .|++|+||||+|+|||++++.+. .+++++.+++ ++ .|. .+|.
T Consensus 250 ~~~~v~~p~l~~l~~~a~~-----------~Ga~ga~~SGaG~GG~v~al~~~-~~a~~~~~~l----~~-~g~--~v~~ 310 (321)
T 4hac_A 250 DALGVNILELSQLIYSARA-----------AGAFGAKITGAGGGGCMVALTAP-EKCNQVAEAV----AG-AGG--KVTI 310 (321)
T ss_dssp HHHTCCCHHHHHHHHHHHH-----------TTCSEEEECSSCSSSEEEEEECS-TTHHHHHHHH----HH-TTC--EEEE
T ss_pred hhcCCCCHHHHHHHHHHHH-----------CCCCEEEECccCCCCEEEEEcCH-HHHHHHHHHH----Hh-CCC--eEEE
Confidence 7799999999999999987 68999999999999999988732 2233444444 32 233 4665
Q ss_pred e--cCCCCce
Q 001947 968 G--SSPGAGK 975 (992)
Q Consensus 968 ~--~~~Ga~~ 975 (992)
. ...|+++
T Consensus 311 ~~~~~~G~~v 320 (321)
T 4hac_A 311 TKPTEQGLKV 320 (321)
T ss_dssp ECBCSCSSEE
T ss_pred EEECCCceec
Confidence 5 5777653
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=5e-36 Score=337.99 Aligned_cols=301 Identities=18% Similarity=0.219 Sum_probs=224.4
Q ss_pred CceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCc-chhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001947 494 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP-SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 572 (992)
Q Consensus 494 ~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 572 (992)
++.+.++|||||||+|||+||+|+.+|.++|++++++.+.++++ .. +.+.+..
T Consensus 11 ~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~---------------------~~~~~~~----- 64 (332)
T 2hfs_A 11 KTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPG---------------------LQVDDQR----- 64 (332)
T ss_dssp BCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCS---------------------EEEEECC-----
T ss_pred CCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCC---------------------eEEEecC-----
Confidence 45578899999999999999999999999999999999998742 21 2222110
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCchHHHH
Q 001947 573 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASV 651 (992)
Q Consensus 573 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~ 651 (992)
..++ ... ....|.+..++..+++..|... ..|++|.+.|+||.++|||||||+
T Consensus 65 ----~~~~----------~~~------------~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~ 118 (332)
T 2hfs_A 65 ----PAIP----------GYI------------AQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASD 118 (332)
T ss_dssp ----CCCT----------THH------------HHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHH
T ss_pred ----cccc----------ccc------------cccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHH
Confidence 0000 000 1235666677777777777542 158999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCcc-ceeeecCCCCeEEEEEe
Q 001947 652 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-LLGVVEIPSHIRFWGID 730 (992)
Q Consensus 652 ~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~-~~~~v~~p~~~~~vl~d 730 (992)
++|++.|++.+++.++++++|+++|+.+|+.++|.|+|. |+.++++||. +++.....+ ..+++++|+++++++++
T Consensus 119 ~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~~~~g~~~~~~~~~~~~~~~vl~~ 194 (332)
T 2hfs_A 119 VVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYRRQNGKSVFKPIAFQQRLYLVVVG 194 (332)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEEECSSSEEEEEECCCSCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEecCCCCcceeeecCCCCcEEEEEE
Confidence 999999999999999999999999999999999999996 9999999994 444332222 23567777789999999
Q ss_pred CCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhh
Q 001947 731 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 810 (992)
Q Consensus 731 sgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 810 (992)
++++++|.. ++.++ ..+++..++.+...
T Consensus 195 ~~~~~~T~~---------------~~~~~----------------------------------~~~~~~~~~~~~~~--- 222 (332)
T 2hfs_A 195 TGINASTAK---------------VVNDV----------------------------------HKMKQQQPVQFKRL--- 222 (332)
T ss_dssp CSCCCCHHH---------------HHHHH----------------------------------HHHHHHCHHHHHHH---
T ss_pred CCCCccHHH---------------HHHHH----------------------------------HHHHHhCHHHHHHH---
Confidence 999888741 11111 01111111111111
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhhc
Q 001947 811 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSAC 890 (992)
Q Consensus 811 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~~ 890 (992)
++++. .++.++..+|+++ |++.||++|+++|..++.+
T Consensus 223 ---------------------------------~~~~~------~~~~~~~~al~~~----d~~~l~~~~~~~~~~l~~~ 259 (332)
T 2hfs_A 223 ---------------------------------YDNYT------HIVSQAREALQKG----DLQRLGQLMNANHDLCRQI 259 (332)
T ss_dssp ---------------------------------HHHHH------HHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------HHHHH------HHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHc
Confidence 11111 2456778888886 9999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001947 891 GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 956 (992)
Q Consensus 891 ~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 956 (992)
++++|++|++++.+++ .|++|+||||+|+|||++++.++...++++.+++.+.|.
T Consensus 260 ~~~~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~ 314 (332)
T 2hfs_A 260 DVSCRELESIVQTCRT-----------YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCP 314 (332)
T ss_dssp TCCCHHHHHHHHHHHH-----------TTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHH-----------cCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHh
Confidence 9999999999999987 688999999999999999887654323466667766654
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=4.8e-34 Score=315.79 Aligned_cols=282 Identities=21% Similarity=0.263 Sum_probs=203.6
Q ss_pred eEEEEcCccccccccccccCCCeeecccc-ccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001947 496 IFVARAPGRLDVMGGIADYSGSLVLQMPI-REACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 574 (992)
Q Consensus 496 ~~~~~APGRv~L~GeH~dy~gg~vl~~aI-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 574 (992)
.+.++|||||||+|||+||+|+.+|.+|| ++++++.+++++ +++++
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i-------------------------------- 51 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRL-------------------------------- 51 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCC--------------------------------
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEE--------------------------------
Confidence 36789999999999999999999999999 999999998763 21110
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHH
Q 001947 575 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 654 (992)
Q Consensus 575 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 654 (992)
... ...|.+..+...+ .++.. .|++|.|.++||.++|||||||+++|
T Consensus 52 -----~~~------------------------~~~~~~~~~~~~~---~~~~~-~g~~i~i~~~iP~g~GLGSSsa~~~a 98 (292)
T 2oi2_A 52 -----YEE------------------------DTLSMAVYASLEY---LNITE-ACIRCEIDSAIPEKRGMGSSAAISIA 98 (292)
T ss_dssp -----CCC------------------------SHHHHHHHHHHHH---HTCSC-CCEEEEEC----CCGGGSCHHHHHHH
T ss_pred -----Eec------------------------CccchhhhhhHHH---hcccC-CceEEEEEecCCCCCCchHHHHHHHH
Confidence 000 0123333333221 25533 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCC-CCeEEEEEeCCC
Q 001947 655 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGI 733 (992)
Q Consensus 655 ~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p-~~~~~vl~dsgi 733 (992)
++.|++.++|.++++++|+++|+.+|+..+|+|||+ |++++++||. +++ ++.... ++++++ +.+ ++++++++
T Consensus 99 ~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~-~~~~~~-~~~~~~~~~~-~~i~~~~~ 171 (292)
T 2oi2_A 99 AIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF-IKNVGF-TELEMDLSAY-LVIADTGV 171 (292)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE-ETTTEE-EECCCCCSCE-EEEEECSS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE-EcCCCc-eeecCCCCCE-EEEEECCC
Confidence 999999999999999999999999999888999995 9999999985 344 343322 555543 345 89999998
Q ss_pred ccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCC
Q 001947 734 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 813 (992)
Q Consensus 734 ~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 813 (992)
+++|.. +.+. +++ ..+
T Consensus 172 ~~sT~~---------------~~~~-------------------------------------l~~------------~~~ 187 (292)
T 2oi2_A 172 YGHTRE---------------AIQV-------------------------------------VQN------------KGK 187 (292)
T ss_dssp CCCHHH---------------HHHH-------------------------------------HHH------------TGG
T ss_pred CCcHHH---------------HHHH-------------------------------------HHH------------HHh
Confidence 887642 0000 000 000
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhhcCCC
Q 001947 814 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG 893 (992)
Q Consensus 814 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~~~vs 893 (992)
..++..|.+.+ .+.++..+|+++ |++.||++|+++|.++++++++
T Consensus 188 -----------------------------~~~~~~~~~~~--~~~~~~~al~~~----d~~~l~~~~~~~~~~l~~~~~~ 232 (292)
T 2oi2_A 188 -----------------------------DALPFLHALGE--LTQQAEIAISQK----DAEGLGQILSQAHLHLKEIGVS 232 (292)
T ss_dssp -----------------------------GGHHHHHHHHH--HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------------------hhHHHHHHHHH--HHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhcCCC
Confidence 00001111211 255777888886 9999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcC
Q 001947 894 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATG 960 (992)
Q Consensus 894 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g 960 (992)
+|++|++++.+++ .|++|+||||+|+|||++++.++..+.+++.+++++.|.+.+|
T Consensus 233 ~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~~~~~ 288 (292)
T 2oi2_A 233 SLEADSLVETALS-----------HGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGAVQTW 288 (292)
T ss_dssp CHHHHHHHHHHHT-----------TTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHHh-----------CCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCcceec
Confidence 9999999999986 6899999999999999998876532234566666655543333
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=8.3e-34 Score=317.75 Aligned_cols=291 Identities=16% Similarity=0.233 Sum_probs=207.0
Q ss_pred ceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001947 495 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 574 (992)
Q Consensus 495 ~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 574 (992)
+.+.++|||||||+|||+||+|+.+|++||++++++.++++++.++ ++.+... +
T Consensus 4 ~~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i---------------------~i~~~~~---~-- 57 (317)
T 1kkh_A 4 SHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEI---------------------ILNLNDL---N-- 57 (317)
T ss_dssp CCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEE---------------------EEEETTT---T--
T ss_pred CCEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeE---------------------EEEeCCC---C--
Confidence 3468899999999999999999999999999999999998866433 3322210 0
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHH---HHhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001947 575 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLM---TELGVRFEDSISMLVSSAVPEGKGVSSSASV 651 (992)
Q Consensus 575 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~---~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 651 (992)
...++++.+.. .....+| +++..++..+. +.++.....|++|.+.++||.++|||||||+
T Consensus 58 ~~~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~ 120 (317)
T 1kkh_A 58 KSLGLNLNEIK----------------NINPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASI 120 (317)
T ss_dssp EEEEEETTTGG----------------GCCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHH
T ss_pred CceEEEeccCC----------------ccCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHH
Confidence 01122221100 0112456 55555555432 2234332369999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCC--C----CeE
Q 001947 652 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP--S----HIR 725 (992)
Q Consensus 652 ~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p--~----~~~ 725 (992)
++|++.|++.+++.++++++|+++|+.+|+.+||.+|| +|+.++++||. +++ ++... ++++++ + ++.
T Consensus 121 ~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~--~~~~~-~~~~~~~~~~l~~~~~ 193 (317)
T 1kkh_A 121 TIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI--KNNKF-RKIKGEFEEFLKNCKF 193 (317)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE--SSSCE-EEECHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE--cCCCc-eEecCCcccccccCcE
Confidence 99999999999999999999999999999999999988 79999999984 333 33333 455432 1 258
Q ss_pred EEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHH
Q 001947 726 FWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFE 805 (992)
Q Consensus 726 ~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~ 805 (992)
+++++++++++|.. +.+.+. .+++. +
T Consensus 194 ~vl~~~~~~~~T~~---------------~~~~~~----------------------------------~~~~~-~---- 219 (317)
T 1kkh_A 194 LIVYAEKRKKKTAE---------------LVNEVA----------------------------------KIENK-D---- 219 (317)
T ss_dssp EEEEEECCCSCHHH---------------HHHHHH----------------------------------TCTTH-H----
T ss_pred EEEEECCCcCcHHH---------------HHHHHH----------------------------------Hhhcc-H----
Confidence 99999999887642 111100 00000 0
Q ss_pred HHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 001947 806 ALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHY 885 (992)
Q Consensus 806 ~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~ 885 (992)
..+.+..+ ...++++.+ |++.||++|+++|.
T Consensus 220 -------------------------------------------~~~~~~~~--~~~~a~~~~----d~~~l~~~~~~~~~ 250 (317)
T 1kkh_A 220 -------------------------------------------EIFKEIDK--VIDEALKIK----NKEDFGKLMTKNHE 250 (317)
T ss_dssp -------------------------------------------HHHHHHHH--HHHHHHHCC----SHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHH--HHHHHHHcC----CHHHHHHHHHHHHH
Confidence 00111111 133456665 89999999999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHH
Q 001947 886 SYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEI 951 (992)
Q Consensus 886 slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i 951 (992)
+++++++++|++|++++.+++ .| +|+||||+|+|||++++.+++. ++++.+++
T Consensus 251 ~~~~~~~~~p~l~~~~~~~~~-----------~G-~ga~~sGaG~GG~v~~l~~~~~-~~~~~~~l 303 (317)
T 1kkh_A 251 LLKKLNISTPKLDRIVDIGNR-----------FG-FGAKLTGAGGGGCVIILVNEEK-EKELLKEL 303 (317)
T ss_dssp HHHTTTCCCHHHHHHHHHHHH-----------HS-SEEEECSSSSSEEEEEECCGGG-HHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHh-----------cC-ceeEEeecCCCCEEEEEechhh-HHHHHHHH
Confidence 999999999999999999987 58 9999999999999998876432 23444333
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=2.8e-29 Score=278.18 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=211.6
Q ss_pred EEEEcCccccccccccccCCCeeeccccccc-eEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 001947 497 FVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 575 (992)
Q Consensus 497 ~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 575 (992)
+.++||+|++.+|++.| ++++++|.+ .++.+.++++++ +.+.+
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~---------------------~~i~~---------- 46 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKE---------------------IIIEV---------- 46 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSS---------------------EEEEE----------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCe---------------------EEEEE----------
Confidence 57899999999999766 889999984 445555554322 22211
Q ss_pred ceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHH
Q 001947 576 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 655 (992)
Q Consensus 576 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~ 655 (992)
+-.+ -+...|.||++.++..+.+..|.+ .|++|.+.++||.++|||||||.++|+
T Consensus 47 ----~~~~-------------------~~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGSSsa~~~a~ 101 (296)
T 1h72_C 47 ----DDKN-------------------IPTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGSSAASSAGT 101 (296)
T ss_dssp ----SCTT-------------------SCCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCHHHHHHHHH
T ss_pred ----cCCc-------------------CCCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccHHHHHHHHH
Confidence 0001 112338999999999877767765 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEeCCCcc
Q 001947 656 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 735 (992)
Q Consensus 656 ~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~dsgi~~ 735 (992)
+.|++.++|.++++++|+++|+++|...+|.|++ .|-.++++||. +++.++.+... +++++|+++.+++++++++.
T Consensus 102 ~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~-ddv~~~~~gg~--~~~~~~~~~~~-~~~~~~~~~~~vl~~p~~~~ 177 (296)
T 1h72_C 102 AYAINELFKLNLDKLKLVDYASYGELASSGAKHA-DNVAPAIFGGF--TMVTNYEPLEV-LHIPIDFKLDILIAIPNISI 177 (296)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC-TTHHHHHHCSE--EEEEETTTTEE-EEECCCSCCCEEEECCSSCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc-cchHHHHhCCE--EEEEeCCceEE-EEEcCCCCeEEEEEeCCCCc
Confidence 9999999999999999999999999999999986 24445899995 23333333223 67777778999999998765
Q ss_pred ccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCcc
Q 001947 736 SVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPES 815 (992)
Q Consensus 736 ~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~ 815 (992)
+|.. +. +.+|+.
T Consensus 178 ~T~~---------------~~-----------------------------------------------------~~l~~~ 189 (296)
T 1h72_C 178 NTKE---------------AR-----------------------------------------------------EILPKA 189 (296)
T ss_dssp CHHH---------------HH-----------------------------------------------------HTSCSC
T ss_pred cHHH---------------HH-----------------------------------------------------HhccCc
Confidence 4421 00 112210
Q ss_pred chhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHH--HHhhhhhhhcCCC
Q 001947 816 IVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELL--YQCHYSYSACGLG 893 (992)
Q Consensus 816 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm--~~sH~slr~~~vs 893 (992)
.+..|.+.|+.|+.++..+|.++ |++.||++| |+.|++++. ++
T Consensus 190 -----------------------------~~~~~~~~~~~~~~~~~~al~~~----d~~~~~~~~~~n~~h~~~~~--~~ 234 (296)
T 1h72_C 190 -----------------------------VGLKDLVNNVGKACGMVYALYNK----DKSLFGRYMMSDKVIEPVRG--KL 234 (296)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHTTCCSSHHHHH--TT
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHhcCcchhhhhh--cc
Confidence 02346777888888899999886 999999999 678999987 49
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCeEEeecCCCC
Q 001947 894 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEGSSPGA 973 (992)
Q Consensus 894 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~~~~Ga 973 (992)
+|++|++++.+++ . ++|+||||+|+ |+++|.+. .+++++.+++.+.|.. ..+... +.|+
T Consensus 235 ~p~l~~~~~~~~~-----------~-a~ga~~sGsG~--~v~~l~~~-~~~~~~~~~l~~~~~~-----~~~~~~-~~Ga 293 (296)
T 1h72_C 235 IPNYFKIKEEVKD-----------K-VYGITISGSGP--SIIAFPKE-EFIDEVENILRDYYEN-----TIRTEV-GKGV 293 (296)
T ss_dssp STTHHHHHHHHTT-----------T-EEEEEECTTSS--CEEEEECG-GGHHHHHHHHHHHCSC-----EEEECB-CCCC
T ss_pred CccHHHHHHHHHh-----------h-cceEEEecCCh--heEEEecH-HHHHHHHHHHHHhccC-----ceeccC-CCCe
Confidence 9999999998876 5 68999999995 88766632 2335666666655542 122222 6776
Q ss_pred ce
Q 001947 974 GK 975 (992)
Q Consensus 974 ~~ 975 (992)
++
T Consensus 294 ~v 295 (296)
T 1h72_C 294 EV 295 (296)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 17
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.96 E-value=1.3e-28 Score=281.15 Aligned_cols=317 Identities=14% Similarity=0.023 Sum_probs=200.1
Q ss_pred cCCC-cccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccccccccChHHHHHHHHHHhhc
Q 001947 23 TGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVA 101 (992)
Q Consensus 23 ~g~G-~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (992)
++.| .||++||++||++|+++||+|+|++.... +..+.++..++.+.... ..++.. ......+...+
T Consensus 8 ~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g-~e~~~v~~~g~~~~~i~-~~~~~~--------~~~~~~~~~~~-- 75 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQARGYAVHWLGTPRG-IENDLVPKAGLPLHLIQ-VSGLRG--------KGLKSLVKAPL-- 75 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSS-THHHHTGGGTCCEEECC-----------------------CHH--
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCch-HhhchhhhcCCcEEEEE-CCCcCC--------CCHHHHHHHHH--
Confidence 3445 39999999999999999999999986432 21222221112222210 001110 00001111000
Q ss_pred cHHHhHHHHHHHHHcCCCcEEEECCCc---hHHHHHHHcCCcEEEE-ecCchhHHHHHHHhhhccchHHHHHHHHhhccc
Q 001947 102 PRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSH 177 (992)
Q Consensus 102 ~~~~~l~~~~~~L~~~kPDlVVsD~~~---~a~~aA~~~gIP~v~i-s~~~~~~~~~~~~~~~~~~~~~i~~~l~~~y~~ 177 (992)
.....+.+..++|++++||+||++..+ .+.++|+.++||++.+ .|..... .+++...+
T Consensus 76 ~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~G~----------------~nr~l~~~-- 137 (365)
T 3s2u_A 76 ELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAGT----------------ANRSLAPI-- 137 (365)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSCCH----------------HHHHHGGG--
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhhhh----------------HHHhhccc--
Confidence 111134456788999999999998633 3567889999999987 3432110 11111122
Q ss_pred cceee-ecCCCCCCCCCCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-Hh---hC-CCCcE
Q 001947 178 CEFLI-RLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---YL-PSGWK 249 (992)
Q Consensus 178 ~d~ll-~~~~~~~~p~~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~--~~ll-~~---l~-~~~~~ 249 (992)
++.++ .++...+......+++.|+....... .+...++++++++|++++||++.. .+.+ +. +. ...+.
T Consensus 138 a~~v~~~~~~~~~~~~k~~~~g~pvr~~~~~~----~~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~ 213 (365)
T 3s2u_A 138 ARRVCEAFPDTFPASDKRLTTGNPVRGELFLD----AHARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPA 213 (365)
T ss_dssp CSEEEESSTTSSCC---CEECCCCCCGGGCCC----TTSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCE
T ss_pred cceeeecccccccCcCcEEEECCCCchhhccc----hhhhcccCCCCcEEEEECCcCCccccchhhHHHHHhcccccceE
Confidence 22222 22221111111223334433221111 122445677888999999999874 2222 22 22 22343
Q ss_pred -EEEeCCCCCC--------CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChHHHHH
Q 001947 250 -CLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRN 318 (992)
Q Consensus 250 -~Vv~G~~~~~--------l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~--~~EQ~~NA~ 318 (992)
++++|.+..+ ++.++.+.+|+++|+++|++||++||++|++|++|++++|+|+|++|.+. ..+|..||+
T Consensus 214 vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~ 293 (365)
T 3s2u_A 214 IRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAE 293 (365)
T ss_dssp EEEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHH
T ss_pred EEEecCccccccccceecccccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHH
Confidence 3467876432 57789999999999999999999999999999999999999999999764 357999999
Q ss_pred HHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHHcc
Q 001947 319 MLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETAIG 373 (992)
Q Consensus 319 ~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~I~~~~~~ 373 (992)
.+++.|+|+.+..++++++.|.++|.++++++..+. ...++++++++.|++++.|
T Consensus 294 ~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 294 FLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred HHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999886422 5789999999999999876
No 18
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.95 E-value=1.1e-26 Score=267.35 Aligned_cols=335 Identities=16% Similarity=0.082 Sum_probs=190.0
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcc---ccc-ccccCh-
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV---QAD-ALTVDR- 88 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~---~~~-~~~~~~- 88 (992)
+.|+|+|+ +.++.||++|+++||++|+++||+|+|++.... ..... ....+.+...+.... ... ....+.
T Consensus 21 ~~MRIL~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (400)
T 4amg_A 21 QSMRALFI-TSPGLSHILPTVPLAQALRALGHEVRYATGGDI---RAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTDPM 95 (400)
T ss_dssp CCCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECSST---HHHHT-TTCEEEESSTTCCSHHHHSCCC-------
T ss_pred CCCeEEEE-CCCchhHHHHHHHHHHHHHHCCCEEEEEeCcch---hhHHh-cCCeeEecCCchhHhhhcccccccccccc
Confidence 45778764 677899999999999999999999999986531 11111 011111111111110 000 000000
Q ss_pred ---HHHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCch--hHHHHHHHhhhcc
Q 001947 89 ---LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--DFIYAEYVMAAGH 162 (992)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~~--~~~~~~~~~~~~~ 162 (992)
......+...+.......+....+.+++++||+||+|. .+++..+|+.+|||.+.+....+ ...+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~---- 171 (400)
T 4amg_A 96 HSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIR---- 171 (400)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHH----
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHHH----
Confidence 00001111111112223445567788899999999996 77888999999999987632111 011111110
Q ss_pred chHHHHHHHHhhccc-----cceeeec-CCC--CCCCC---CCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcC
Q 001947 163 HHRSIVWQIAEDYSH-----CEFLIRL-PGY--CPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (992)
Q Consensus 163 ~~~~i~~~l~~~y~~-----~d~ll~~-~~~--~~~p~---~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~G 231 (992)
. ........+.. ....+.. +.. ...+. .+........... ......+++...+++++|||++|
T Consensus 172 --~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~G 245 (400)
T 4amg_A 172 --R-AMSKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTLG 245 (400)
T ss_dssp --H-HTHHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECCC
T ss_pred --H-HHHHHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCccccccc---ccccCcccccccCCCcEEEEeCC
Confidence 0 00111111110 0000100 000 00000 0111111110000 00111234556678899999999
Q ss_pred CCCCh-------hhHHHhhCCCCcEEEEe-CCCCCC----CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcC
Q 001947 232 GQPAG-------WKLKEEYLPSGWKCLVC-GASDSQ----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (992)
Q Consensus 232 g~~~~-------~~ll~~l~~~~~~~Vv~-G~~~~~----l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~G 299 (992)
|.... ..+++.+...++.+++. +..... +|+|+.+.+|++ +.++|++||+||||||+||++|++++|
T Consensus 246 s~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~G 324 (400)
T 4amg_A 246 SIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAAG 324 (400)
T ss_dssp SCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHHT
T ss_pred cccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecC-HHHHhhhhhheeccCCccHHHHHHHhC
Confidence 97652 12344455566666654 333221 789999998764 568999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 001947 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (992)
Q Consensus 300 vP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~I~~~ 370 (992)
+|+|++| .+.||+.||+++++.|+|+.++..+++ .++|+++|+++.... ...+|..++|+.|+++
T Consensus 325 vP~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~----~~al~~lL~d~~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 325 VPQCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLG----AEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp CCEEECC--C---CHHHHHHHHHHTSEEECCTTTCS----HHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCEEEec--CcccHHHHHHHHHHCCCEEEcCCCCch----HHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 9999999 567999999999999999999987776 457778887664211 3455777777777764
No 19
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.94 E-value=6.8e-26 Score=263.52 Aligned_cols=348 Identities=16% Similarity=0.134 Sum_probs=211.8
Q ss_pred CCCCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeeccc--CCcccccccccC
Q 001947 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVD 87 (992)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~ 87 (992)
+.+|+.++|++ ++.++.||++|+++||++|+++||+|+|++.... ...+...++.+.+...+ .+.........+
T Consensus 7 ~~~m~~~~Il~-~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
T 2iya_A 7 SASVTPRHISF-FNIPGHGHVNPSLGIVQELVARGHRVSYAITDEF---AAQVKAAGATPVVYDSILPKESNPEESWPED 82 (424)
T ss_dssp ----CCCEEEE-ECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHHTCEEEECCCCSCCTTCTTCCCCSS
T ss_pred cCCcccceEEE-EeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEecCccccccccchhhcchh
Confidence 34466667766 4777899999999999999999999999987531 11111111222222111 010000000111
Q ss_pred hHHHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-----hhHHHH----HH-
Q 001947 88 RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-----WDFIYA----EY- 156 (992)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~-----~~~~~~----~~- 156 (992)
....+..+. ........+..+++++.+||+||+|. .+++..+|+.+|||++.+.... |..... .+
T Consensus 83 ~~~~~~~~~----~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (424)
T 2iya_A 83 QESAMGLFL----DEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTA 158 (424)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccccc
Confidence 111111111 12233455667788889999999998 5678889999999999884221 210000 00
Q ss_pred -------Hhh-hc---------cchHHH---HHHHHhhcc----------ccceeee-cCCCCCCC--CC-CceeecCcc
Q 001947 157 -------VMA-AG---------HHHRSI---VWQIAEDYS----------HCEFLIR-LPGYCPMP--AF-RDVIDVPLV 202 (992)
Q Consensus 157 -------~~~-~~---------~~~~~i---~~~l~~~y~----------~~d~ll~-~~~~~~~p--~~-~~v~~vp~~ 202 (992)
.+. .. ...... ...+...+. ..+..+. .+.....+ .+ ++++.+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~ 238 (424)
T 2iya_A 159 DRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPT 238 (424)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCC
T ss_pred ccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCC
Confidence 000 00 000111 111111110 1222221 22222111 11 246667764
Q ss_pred cccCCCChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEE-EeCCCCC-----CCCCCeEEcCCCC
Q 001947 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDA 271 (992)
Q Consensus 203 ~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~V-v~G~~~~-----~l~~nv~v~~f~~ 271 (992)
... +.+..+++..++++++||+++||.+.. . .+++.+...++.++ ++|.+.. .+++|+++.+|++
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 314 (424)
T 2iya_A 239 YGD----RSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVP 314 (424)
T ss_dssp CCC----CGGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEESSCC
T ss_pred CCC----cccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEecCCC
Confidence 321 111112222235678999999998742 2 23445655667664 5676432 1678999999887
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 001947 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (992)
Q Consensus 272 ~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~ 351 (992)
.+ ++|++||+||+|+|+||++|++++|+|+|++|. ..||..|++++++.|+|+.+..++++++.+.++|+++++++.
T Consensus 315 ~~-~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 315 QL-DILTKASAFITHAGMGSTMEALSNAVPMVAVPQ--IAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp HH-HHHTTCSEEEECCCHHHHHHHHHTTCCEEECCC--SHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HH-HHHhhCCEEEECCchhHHHHHHHcCCCEEEecC--ccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 65 899999999999999999999999999999994 569999999999999999998888889999999999998764
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHHc
Q 001947 352 CYE---------GGINGGEVAAHILQETAI 372 (992)
Q Consensus 352 ~~~---------~~~~G~~~aA~~I~~~~~ 372 (992)
... ...+|.+++++.|++++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 392 VAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 311 357899999999988763
No 20
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.94 E-value=9.7e-26 Score=261.14 Aligned_cols=346 Identities=14% Similarity=0.097 Sum_probs=209.8
Q ss_pred CCCCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccc--cccccC
Q 001947 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA--DALTVD 87 (992)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~--~~~~~~ 87 (992)
...| ++|+|+ +..|.||++|+++||++|+++||+|+|++... +...+...++.+.....+...... .....+
T Consensus 17 ~~~m--~rIl~~-~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
T 3rsc_A 17 GRHM--AHLLIV-NVASHGLILPTLTVVTELVRRGHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVFGSDD 90 (415)
T ss_dssp --CC--CEEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSS
T ss_pred cccC--CEEEEE-eCCCccccccHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhcCCEEEeccccccccccchhhcccc
Confidence 4456 455444 45689999999999999999999999998542 111111112233332111110000 000001
Q ss_pred hHHHHHH-HHHHhhccHHHhHHHHHHHHHcCCCcEEEEC-C-CchHHHHHHHcCCcEEEEecCc-----hhH--HHHHHH
Q 001947 88 RLASLEK-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS-----WDF--IYAEYV 157 (992)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~a~~aA~~~gIP~v~is~~~-----~~~--~~~~~~ 157 (992)
....+.. +.. .....+.+..+++++++||+||+| + .+++.++|+.+|||++.+.... |.. ....+.
T Consensus 91 ~~~~~~~~~~~----~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T 3rsc_A 91 LGVRPHLMYLR----ENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLA 166 (415)
T ss_dssp SCHHHHHHHHH----HHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccccccccccc
Confidence 1011111 111 122345566788899999999999 4 6667888999999999874211 111 000000
Q ss_pred -hhhccchHH---HHHHHHhhccc-----------cceee-ecCCCCCCCC---CCceeecCcccccCCCChHHHHHHhC
Q 001947 158 -MAAGHHHRS---IVWQIAEDYSH-----------CEFLI-RLPGYCPMPA---FRDVIDVPLVVRRLHKSRKEVRKELG 218 (992)
Q Consensus 158 -~~~~~~~~~---i~~~l~~~y~~-----------~d~ll-~~~~~~~~p~---~~~v~~vp~~~~~~~~~r~e~r~~l~ 218 (992)
...+..... ..+.+...+.. .+..+ .++.....+. ...++.+|+..... .+..++..
T Consensus 167 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~----~~~~~~~~ 242 (415)
T 3rsc_A 167 GTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR----RFLGEWTR 242 (415)
T ss_dssp TCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCC----GGGCCCCC
T ss_pred ccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCc----ccCcCccc
Confidence 000000011 11112122211 02222 2332222110 12355665543211 11111222
Q ss_pred CCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEE-eCCCCC-----CCCCCeEEcCCCCCHHHHHhhcCEEEecC
Q 001947 219 IEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (992)
Q Consensus 219 ~~~d~~~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~Vv-~G~~~~-----~l~~nv~v~~f~~~~p~lL~aaDlvIt~~ 287 (992)
..+++++|++++||.+.. . .+++.+...++.+++ +|.+.. .+++|+++.+|++++ ++|++||++|+|+
T Consensus 243 ~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~ 321 (415)
T 3rsc_A 243 PADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHV-KVLEQATVCVTHG 321 (415)
T ss_dssp CSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHH-HHHHHEEEEEESC
T ss_pred cCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHH-HHHhhCCEEEECC
Confidence 346788999999998653 1 233345444576665 676432 168899999998765 9999999999999
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCC
Q 001947 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGIN 358 (992)
Q Consensus 288 G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~ 358 (992)
|++|++|++++|+|+|++|. ..||..|++++++.|+|+.+..++++++.+.++|.++++++.... ...+
T Consensus 322 G~~t~~Ea~~~G~P~v~~p~--~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 399 (415)
T 3rsc_A 322 GMGTLMEALYWGRPLVVVPQ--SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAG 399 (415)
T ss_dssp CHHHHHHHHHTTCCEEECCC--SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhCCCEEEeCC--cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999984 679999999999999999999888889999999999998764321 3578
Q ss_pred HHHHHHHHHHHHHc
Q 001947 359 GGEVAAHILQETAI 372 (992)
Q Consensus 359 G~~~aA~~I~~~~~ 372 (992)
|++++++.|++++.
T Consensus 400 ~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 400 GAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988763
No 21
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.94 E-value=2.5e-25 Score=255.88 Aligned_cols=343 Identities=18% Similarity=0.118 Sum_probs=208.9
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCccc--ccccccChHHHHH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ--ADALTVDRLASLE 93 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~ 93 (992)
++|+|+ +..+.||++|+++||++|+++||+|+|++... +...+...++.+.....+..... ......+....+.
T Consensus 5 ~~il~~-~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 5 RHILFA-NVQGHGHVYPSLGLVSELARRGHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred CEEEEE-eCCCCcccccHHHHHHHHHhCCCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHHHH
Confidence 356554 45689999999999999999999999998642 11111111222322211110000 0001111111111
Q ss_pred H-HHHHhhccHHHhHHHHHHHHHcCCCcEEEEC-C-CchHHHHHHHcCCcEEEEecCc--h---hH--HHHHHHhhhcc-
Q 001947 94 K-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS--W---DF--IYAEYVMAAGH- 162 (992)
Q Consensus 94 ~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~a~~aA~~~gIP~v~is~~~--~---~~--~~~~~~~~~~~- 162 (992)
. +.. .....+.+..+++++++||+||+| + .+++..+|+.+|||++.+.... | .. ...........
T Consensus 81 ~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
T 3ia7_A 81 LVYVR----ENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA 156 (402)
T ss_dssp HHHHH----HHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG
T ss_pred HHHHH----HHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh
Confidence 1 111 222345667788899999999999 4 6677888999999999874321 1 11 00000000000
Q ss_pred chHHH---HHHHHhhccc-----------cceee-ecCCCCCCC--C-CCceeecCcccccCCCChHHHHHHhCCCCCCc
Q 001947 163 HHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--A-FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVK 224 (992)
Q Consensus 163 ~~~~i---~~~l~~~y~~-----------~d~ll-~~~~~~~~p--~-~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~ 224 (992)
..... ...+...+.. .+..+ .++.....+ . ..+++.+|+.... +.+...+....++++
T Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~----~~~~~~~~~~~~~~~ 232 (402)
T 3ia7_A 157 DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTG----RDGQPGWQPPRPDAP 232 (402)
T ss_dssp GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC--------CCCCCSSTTCC
T ss_pred hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCC----cccCCCCcccCCCCC
Confidence 00111 1111111111 02122 222221111 0 1235556553321 111112222246788
Q ss_pred EEEEEcCCCCCh-h----hHHHhhCCCCcEEE-EeCCCCC-----CCCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHH
Q 001947 225 LLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (992)
Q Consensus 225 ~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~V-v~G~~~~-----~l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~ 293 (992)
+|++++|+.+.. . .+++.+...++.++ ++|.+.. .+++|+++.+|++++ ++|++||++|+|+|++|++
T Consensus 233 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~G~~t~~ 311 (402)
T 3ia7_A 233 VLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFH-SVLAHARACLTHGTTGAVL 311 (402)
T ss_dssp EEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHH-HHHTTEEEEEECCCHHHHH
T ss_pred EEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHH-HHHhhCCEEEECCCHHHHH
Confidence 999999998763 1 23334544456555 4676432 168899999998876 9999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHH
Q 001947 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAA 364 (992)
Q Consensus 294 Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA 364 (992)
|++++|+|+|++|.+ ..||..|++.+++.|+|+.+..++++++.|.+++.++++++.... ...+|.++++
T Consensus 312 Ea~~~G~P~v~~p~~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (402)
T 3ia7_A 312 EAFAAGVPLVLVPHF-ATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSGGPARAA 390 (402)
T ss_dssp HHHHTTCCEEECGGG-CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHhCCCEEEeCCC-cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCChHHHHH
Confidence 999999999999852 579999999999999999999888889999999999998764321 4678999999
Q ss_pred HHHHHHHc
Q 001947 365 HILQETAI 372 (992)
Q Consensus 365 ~~I~~~~~ 372 (992)
+.|++++.
T Consensus 391 ~~i~~~~~ 398 (402)
T 3ia7_A 391 DEVEAYLG 398 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 22
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.93 E-value=8.5e-25 Score=255.84 Aligned_cols=347 Identities=15% Similarity=0.116 Sum_probs=205.8
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccC---Cccccc--cc----
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC---GAVQAD--AL---- 84 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---g~~~~~--~~---- 84 (992)
..|+|+|+ ++++.||++|+++||++|+++||+|+|++... + ...+...++.+.....+. +..... ..
T Consensus 19 ~~mrIl~~-~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~-~--~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~ 94 (441)
T 2yjn_A 19 SHMRVVFS-SMASKSHLFGLVPLAWAFRAAGHEVRVVASPA-L--TEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYV 94 (441)
T ss_dssp CCCEEEEE-CCSCHHHHTTTHHHHHHHHHTTCEEEEEECGG-G--HHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHHH
T ss_pred CccEEEEE-cCCCcchHhHHHHHHHHHHHCCCeEEEEeCch-h--HHHHHhCCCceeecCCccchHHHhhhhhccccccc
Confidence 33677766 77778999999999999999999999998653 1 222211222232321111 110000 00
Q ss_pred -ccC-----hH----HHHHH----HHHHhhccH-HH-hHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-
Q 001947 85 -TVD-----RL----ASLEK----YSETAVAPR-KS-ILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN- 146 (992)
Q Consensus 85 -~~~-----~~----~~~~~----~~~~~~~~~-~~-~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~- 146 (992)
..+ .. ..+.. +...+.... .. .+.++.+++++++||+||+|. .+++..+|+.+|||++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~ 174 (441)
T 2yjn_A 95 RSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWG 174 (441)
T ss_dssp TTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSS
T ss_pred ccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecC
Confidence 000 00 01101 111111001 01 456677788899999999997 67788899999999998832
Q ss_pred Cchh-HHHHHHHhhh---c-----cchHHHHHHHHhhccc---------cceeee-cCCCCCCC-CCC--ceeecCcccc
Q 001947 147 FSWD-FIYAEYVMAA---G-----HHHRSIVWQIAEDYSH---------CEFLIR-LPGYCPMP-AFR--DVIDVPLVVR 204 (992)
Q Consensus 147 ~~~~-~~~~~~~~~~---~-----~~~~~i~~~l~~~y~~---------~d~ll~-~~~~~~~p-~~~--~v~~vp~~~~ 204 (992)
.... .....+.... + .........+.+.+.. .+..+. ++.....+ ..+ .+.++|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 252 (441)
T 2yjn_A 175 PDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYN-- 252 (441)
T ss_dssp CCHHHHHHHHHHHHGGGSCTTTCCCHHHHHHHHHHHHTTCCCCCGGGTSCSSEEECSCGGGSCCCCCCEEECCCCCCC--
T ss_pred CCcchhhhhhhhhhccccccccccchHHHHHHHHHHHcCCCCCCccccCCCeEEEecCccccCCCCCCCCceeeeCCC--
Confidence 1111 1111111100 0 0001112222222211 111221 11111111 111 11111110
Q ss_pred cCCCChHHHHHHhCCCCCCcEEEEEcCCCCCh--------hhHHHhhCCCCcEEEEe-CCCCCC----CCCCeEEcCCCC
Q 001947 205 RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--------WKLKEEYLPSGWKCLVC-GASDSQ----LPPNFIKLPKDA 271 (992)
Q Consensus 205 ~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~--------~~ll~~l~~~~~~~Vv~-G~~~~~----l~~nv~v~~f~~ 271 (992)
.+.++.++++..+++++||+++||.+.. ..+++++...++.+++. |....+ +++|+++.+|++
T Consensus 253 ----~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~ 328 (441)
T 2yjn_A 253 ----GPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVP 328 (441)
T ss_dssp ----SSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTSSCSSCCSSEEECCSCC
T ss_pred ----CCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchhhhccCCCCEEEecCCC
Confidence 1112334555456778999999998742 13344454456776654 433221 578999999887
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 001947 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (992)
Q Consensus 272 ~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~ 351 (992)
. .++|++||+||+|+|+||++|++++|+|+|++|. ..||..|++++++.|+|+.+..++++++.|.++|.++++++.
T Consensus 329 ~-~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 405 (441)
T 2yjn_A 329 M-HALLPTCAATVHHGGPGSWHTAAIHGVPQVILPD--GWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPA 405 (441)
T ss_dssp H-HHHGGGCSEEEECCCHHHHHHHHHTTCCEEECCC--SHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHH
T ss_pred H-HHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeCC--cccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHH
Confidence 5 7899999999999999999999999999999994 679999999999999999999888889999999999998764
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHHcc
Q 001947 352 CYE---------GGINGGEVAAHILQETAIG 373 (992)
Q Consensus 352 ~~~---------~~~~G~~~aA~~I~~~~~~ 373 (992)
... ...+|++++++.|++++..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 406 HRAGAARMRDDMLAEPSPAEVVGICEELAAG 436 (441)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 321 4678999999999988743
No 23
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.93 E-value=1.4e-24 Score=250.06 Aligned_cols=335 Identities=16% Similarity=0.115 Sum_probs=186.4
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCc---------cccccc
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGA---------VQADAL 84 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~---------~~~~~~ 84 (992)
..|+|+|+. ..+.||++++++|+++|+++||+|++++... +...+...++.+.....+... ......
T Consensus 14 ~~MrIl~~~-~~~~gh~~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T 4fzr_A 14 SHMRILVIA-GCSEGFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTM 89 (398)
T ss_dssp -CCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEEEGG---GHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCC
T ss_pred CceEEEEEc-CCCcchHHHHHHHHHHHHHCCCEEEEEcCHH---HHHHHHhCCCeeEecCCccchHhhhhhhccCccccc
Confidence 346787654 4589999999999999999999999998642 111111011111111100000 000000
Q ss_pred ccChHHHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-Cc-hhHHHHHHHhhhc
Q 001947 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMAAG 161 (992)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~-~~-~~~~~~~~~~~~~ 161 (992)
.......+......+.......+.++.+++++++||+||+|. .+++.++|+.+|||++.+.. +. +.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~----- 164 (398)
T 4fzr_A 90 PREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAG----- 164 (398)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHH-----
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHH-----
Confidence 011111122222222222333556677888999999999986 67788899999999988732 21 11111100
Q ss_pred cchHHHHHHHHhhccc-----cceee-ecCCCCCCCCCC---ceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCC
Q 001947 162 HHHRSIVWQIAEDYSH-----CEFLI-RLPGYCPMPAFR---DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG 232 (992)
Q Consensus 162 ~~~~~i~~~l~~~y~~-----~d~ll-~~~~~~~~p~~~---~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg 232 (992)
...+. .....|.. .+..+ ..+.....+... .+..+|... .+.++.+++..++++++||+++|+
T Consensus 165 --~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~v~~G~ 236 (398)
T 4fzr_A 165 --VGELA-PELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNG-----RNDQVPSWVFEERKQPRLCLTFGT 236 (398)
T ss_dssp --HHHTH-HHHHTTTCSSCCCCSEEEECSCGGGC----CCCEECCCCCCCC-----SSCCCCHHHHSCCSSCEEECC---
T ss_pred --HHHHH-HHHHHcCCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCCC-----CCCCCchhhhcCCCCCEEEEEccC
Confidence 01111 11222211 12112 122111111000 011122110 111112223334577899999998
Q ss_pred CCC---------h----hhHHHhhCCCCcEEEEe-CCCCC----CCCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHH
Q 001947 233 QPA---------G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSE 294 (992)
Q Consensus 233 ~~~---------~----~~ll~~l~~~~~~~Vv~-G~~~~----~l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~E 294 (992)
... . ..+++.+...++.+++. |.... .+++|+++.+|++ ++++|+.||+||+|+|++|++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~gG~~t~~E 315 (398)
T 4fzr_A 237 RVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFP-LSAIMPACDVVVHHGGHGTTLT 315 (398)
T ss_dssp -------------CCSHHHHHHHGGGGTCEEEECCCC--------CCTTEEEESCCC-HHHHGGGCSEEEECCCHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccCCCcEEEeCcCC-HHHHHhhCCEEEecCCHHHHHH
Confidence 842 1 23344454446766665 33322 1688999999984 7899999999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHH
Q 001947 295 ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAH 365 (992)
Q Consensus 295 al~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~ 365 (992)
|+++|+|+|++| ...||..|++++++.|+|+.+..++++++.|.++|.++++++.... ...++.+++++
T Consensus 316 a~~~G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (398)
T 4fzr_A 316 CLSEGVPQVSVP--VIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVR 393 (398)
T ss_dssp HHHTTCCEEECC--CSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999998 4679999999999999999999888888999999999998764311 34555655555
Q ss_pred HHH
Q 001947 366 ILQ 368 (992)
Q Consensus 366 ~I~ 368 (992)
.|+
T Consensus 394 ~l~ 396 (398)
T 4fzr_A 394 LIE 396 (398)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 24
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.92 E-value=9.4e-24 Score=244.94 Aligned_cols=337 Identities=10% Similarity=0.019 Sum_probs=200.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccC-CcccccccccChHHHHHH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 94 (992)
|+|+++ ++++.||++|+++||++|+++||+|+|++... +...+...++.+....... .... .........
T Consensus 1 M~Il~~-~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~i~~~~~~~~~--~~~~~~~~~--- 71 (415)
T 1iir_A 1 MRVLLA-TCGSRGDTEPLVALAVRVRDLGADVRMCAPPD---CAERLAEVGVPHVPVGPSARAPIQ--RAKPLTAED--- 71 (415)
T ss_dssp CEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCCEEECCC---------CCSCCCHHH---
T ss_pred CeEEEE-cCCCchhHHHHHHHHHHHHHCCCeEEEEcCHH---HHHHHHHcCCeeeeCCCCHHHHhh--cccccchHH---
Confidence 356555 67789999999999999999999999998754 1111111122222211110 0000 000011111
Q ss_pred HHHHhhccHHHhHHHH-HHHHH-cCCCcEEEECC--Cch--HHHHHHHcCCcEEEEecCc-hhH------------H---
Q 001947 95 YSETAVAPRKSILKDE-VEWLN-SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDF------------I--- 152 (992)
Q Consensus 95 ~~~~~~~~~~~~l~~~-~~~L~-~~kPDlVVsD~--~~~--a~~aA~~~gIP~v~is~~~-~~~------------~--- 152 (992)
+..++. ....+. .++++ ..+||+||+|. .++ +..+|+.+|||++.+.... +.. .
T Consensus 72 ~~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~ 147 (415)
T 1iir_A 72 VRRFTT----EAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQD 147 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC--------
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccch
Confidence 111111 111222 22222 68999999996 556 7788999999999884322 100 0
Q ss_pred -HHHHHhhh--cc----chHHHHHHHHhhcccc------------ceeeecCCCC---CCCCCCceeecCccccc-CCCC
Q 001947 153 -YAEYVMAA--GH----HHRSIVWQIAEDYSHC------------EFLIRLPGYC---PMPAFRDVIDVPLVVRR-LHKS 209 (992)
Q Consensus 153 -~~~~~~~~--~~----~~~~i~~~l~~~y~~~------------d~ll~~~~~~---~~p~~~~v~~vp~~~~~-~~~~ 209 (992)
........ .. .+....+.+...+... -.+...++.. +.+.. ++..+|+.... ....
T Consensus 148 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~vG~~~~~~~~~~ 226 (415)
T 1iir_A 148 TIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDL-DAVQTGAWILPDERPL 226 (415)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSS-CCEECCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCCCEEEeeChhhcCCCcccC-CeEeeCCCccCcccCC
Confidence 00000000 00 0000011121111100 0122222222 11222 56677776543 2123
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch---hhHHHhhCCCCcEEE-EeCCCCCC---CCCCeEEcCCCCCHHHHHhhcC
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKEEYLPSGWKCL-VCGASDSQ---LPPNFIKLPKDAYTPDFMAASD 281 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~-~~---~~ll~~l~~~~~~~V-v~G~~~~~---l~~nv~v~~f~~~~p~lL~aaD 281 (992)
+.++.++++ .++++||+++||.+ .. ..+++.+...++.++ ++|..... +++|+++.+|++. .++|++||
T Consensus 227 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~-~~~l~~~d 303 (415)
T 1iir_A 227 SPELAAFLD--AGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNH-QVLFGRVA 303 (415)
T ss_dssp CHHHHHHHH--TSSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCH-HHHGGGSS
T ss_pred CHHHHHHHh--hCCCeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCcccccCCCCCEEEeCcCCh-HHHHhhCC
Confidence 456666654 44578999999985 32 123344433345454 45754432 5789999998764 58899999
Q ss_pred EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-------
Q 001947 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (992)
Q Consensus 282 lvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~------- 354 (992)
+||+|+|+||++|++++|+|+|++|. +.||..||+++++.|+|+.++.++++++.+.++|.++ +++....
T Consensus 304 ~~v~~~G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~ 380 (415)
T 1iir_A 304 AVIHHGGAGTTHVAARAGAPQILLPQ--MADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAG 380 (415)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECCC--STTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHH
T ss_pred EEEeCCChhHHHHHHHcCCCEEECCC--CCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 99999999999999999999999994 6799999999999999999988888899999999999 7653211
Q ss_pred --CCCCHHHHHHHHHHHHHc
Q 001947 355 --GGINGGEVAAHILQETAI 372 (992)
Q Consensus 355 --~~~~G~~~aA~~I~~~~~ 372 (992)
...+|++++++.|++++.
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 381 TIRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp HSCSCHHHHHHHHHHHHHHT
T ss_pred HHhhcChHHHHHHHHHHHHh
Confidence 468999999999999874
No 25
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.92 E-value=2.4e-24 Score=249.09 Aligned_cols=338 Identities=13% Similarity=0.056 Sum_probs=198.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCccc-ccccc-cChHHHHH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ-ADALT-VDRLASLE 93 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~ 93 (992)
|+|+++. ....||++|+++||++|+++||+|+|++... +...+...++.+.+...+..... ..... ......+
T Consensus 1 MrIli~~-~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~---~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 75 (404)
T 3h4t_A 1 MGVLITG-CGSRGDTEPLVALAARLRELGADARMCLPPD---YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVV- 75 (404)
T ss_dssp -CEEEEE-ESSHHHHHHHHHHHHHHHHTTCCEEEEECGG---GHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGH-
T ss_pred CeEEEEe-CCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHH-
Confidence 3455443 3457999999999999999999999998643 11111111112222111110000 00000 0000111
Q ss_pred HHHHHhhccHHHhHHHHHHHHHcCCCcEEEECCC-chH---HHHHHHcCCcEEEEecCchhHHHHHH------Hhh-hcc
Q 001947 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV-PVA---CRAAADAGIRSVCVTNFSWDFIYAEY------VMA-AGH 162 (992)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~-~~a---~~aA~~~gIP~v~is~~~~~~~~~~~------~~~-~~~ 162 (992)
.. .....+.+..+.+ .+||+||+|.. +.+ ..+|+.+|||++.+....|......+ ... ...
T Consensus 76 --~~----~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 147 (404)
T 3h4t_A 76 --TE----VVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADR 147 (404)
T ss_dssp --HH----HHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHH
T ss_pred --HH----HHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHH
Confidence 11 1111222223333 37999998853 333 67889999999987543331000000 000 000
Q ss_pred chHHHHHHHHhhccc-----------cc-eeeecCCCC-CCCC-CCceeecCccccc-CCCChHHHHHHhCCCCCCcEEE
Q 001947 163 HHRSIVWQIAEDYSH-----------CE-FLIRLPGYC-PMPA-FRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLI 227 (992)
Q Consensus 163 ~~~~i~~~l~~~y~~-----------~d-~ll~~~~~~-~~p~-~~~v~~vp~~~~~-~~~~r~e~r~~l~~~~d~~~Vl 227 (992)
.+....+.....+.- .+ .++...+.. +.+. ..++..+|....+ ....+++++++++ +++++||
T Consensus 148 ~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~~G~~~~~~~~~~~~~l~~~l~--~~~~~Vl 225 (404)
T 3h4t_A 148 LFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLR--AGSPPVY 225 (404)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHHH--TSSCCEE
T ss_pred HhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCCCCCCCCeEEeCccccCCCCCCCHHHHHHHh--cCCCeEE
Confidence 001111111111110 00 111111111 1111 1234445543322 2234566777664 5678899
Q ss_pred EEcCCCCCh----hhHHHhhCCCCcEEEE-eCCCCCC---CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcC
Q 001947 228 LNFGGQPAG----WKLKEEYLPSGWKCLV-CGASDSQ---LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (992)
Q Consensus 228 vs~Gg~~~~----~~ll~~l~~~~~~~Vv-~G~~~~~---l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~G 299 (992)
|++||.+.. ..+++.+...++.+++ +|..... .++|+++.+|.+ ..++|+.||+||||+|+||++|++++|
T Consensus 226 v~~Gs~~~~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~~d~~v~~gG~~t~~Eal~~G 304 (404)
T 3h4t_A 226 VGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVN-HQVLFGRVAAVVHHGGAGTTTAVTRAG 304 (404)
T ss_dssp ECCTTSCCCTTHHHHHHHHHHHTTCCEEEECTTTTCCCSSCCTTEEEESSCC-HHHHGGGSSEEEECCCHHHHHHHHHHT
T ss_pred EECCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCcccccccCCCCEEEecCCC-HHHHHhhCcEEEECCcHHHHHHHHHcC
Confidence 999998732 2334444334565554 4644322 588999999875 478999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 001947 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (992)
Q Consensus 300 vP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~I~~~ 370 (992)
+|+|++| .+.||+.|++++++.|+|+.+...+++++.+.++|.++++ +.... .. +|++++++.|++.
T Consensus 305 vP~v~~p--~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 380 (404)
T 3h4t_A 305 APQVVVP--QKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTIRT-DGTTVAAKLLLEA 380 (404)
T ss_dssp CCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred CCEEEcC--CcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 9999998 4679999999999999999999888889999999999997 43211 45 9999999999999
Q ss_pred Hcc
Q 001947 371 AIG 373 (992)
Q Consensus 371 ~~~ 373 (992)
+..
T Consensus 381 ~~~ 383 (404)
T 3h4t_A 381 ISR 383 (404)
T ss_dssp HHC
T ss_pred Hhh
Confidence 864
No 26
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.92 E-value=8.4e-25 Score=252.12 Aligned_cols=328 Identities=14% Similarity=0.097 Sum_probs=195.4
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccc---c----------
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA---D---------- 82 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~---~---------- 82 (992)
|+|+|+.. .+.||++++++||++|+++||+|+|++. . +...+...++.+.....+..+... .
T Consensus 21 MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~-~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
T 3oti_A 21 MRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA-E---HADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAET 95 (398)
T ss_dssp CEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES-S---CHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHT
T ss_pred CEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc-c---hHHHHHhCCCeeEecCCccCHHHHhhhcccCCcccccc
Confidence 67776654 5899999999999999999999999987 3 222221122233222111000000 0
Q ss_pred ---ccccChHHHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEe-cCchhHHHHHHH
Q 001947 83 ---ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVT-NFSWDFIYAEYV 157 (992)
Q Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is-~~~~~~~~~~~~ 157 (992)
............+.. .....+.+..+++++++||+||+|. .+++.++|+.+|||++.+. .+.....+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~ 171 (398)
T 3oti_A 96 VATRPAIDLEEWGVQIAA----VNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSI 171 (398)
T ss_dssp GGGSCCCSGGGGHHHHHH----HHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTHHHHH
T ss_pred ccCChhhhHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccchhhHH
Confidence 000000000111111 1123456677889999999999986 6668889999999998763 221100000000
Q ss_pred hhhccchHHHHHHHHhhccc----cceee-ecCCCCCCCC---CCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEE
Q 001947 158 MAAGHHHRSIVWQIAEDYSH----CEFLI-RLPGYCPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILN 229 (992)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~----~d~ll-~~~~~~~~p~---~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs 229 (992)
. ... ....+.|.. .+..+ ..+.....+. ...+..+|.. .+.....++...+++++||++
T Consensus 172 ~---~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~v~ 238 (398)
T 3oti_A 172 A---SFL----TDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYG------GGAVLGDRLPPVPARPEVAIT 238 (398)
T ss_dssp H---TTC----HHHHHHTTCCCCCCSEEECSSCGGGGTTSCCCSBCCCCCCCC------CCEECCSSCCCCCSSCEEEEC
T ss_pred H---HHH----HHHHHHcCCCCCCCCeEEEeCCHHHCCCCCCCCCCccccCCC------CCcCCchhhhcCCCCCEEEEE
Confidence 0 001 111222211 11111 1111111110 0001111110 011111233445678899999
Q ss_pred cCCCCC-----h--hhHHHhhCCCCcEEEEe-CCCCCC----CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHH
Q 001947 230 FGGQPA-----G--WKLKEEYLPSGWKCLVC-GASDSQ----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297 (992)
Q Consensus 230 ~Gg~~~-----~--~~ll~~l~~~~~~~Vv~-G~~~~~----l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~ 297 (992)
+|+... . ..+++.+...++.+++. |..... +++|+++.+|+ ++.++|++||+||+|+|+||++||++
T Consensus 239 ~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~-~~~~ll~~ad~~v~~~G~~t~~Eal~ 317 (398)
T 3oti_A 239 MGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWT-PLHTLLRTCTAVVHHGGGGTVMTAID 317 (398)
T ss_dssp CTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSC-CHHHHHTTCSEEEECCCHHHHHHHHH
T ss_pred cCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccC-CHHHHHhhCCEEEECCCHHHHHHHHH
Confidence 999843 1 12334454456766654 443321 68899999998 68899999999999999999999999
Q ss_pred cCCcEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHH
Q 001947 298 YKLPFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (992)
Q Consensus 298 ~GvP~V~iP~~~~~EQ~~NA--~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~ 366 (992)
+|+|+|++|. ..||..|+ +++++.|+|+.++.++++++.+. ++++++.... ...+|.+++++.
T Consensus 318 ~G~P~v~~p~--~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (398)
T 3oti_A 318 AGIPQLLAPD--PRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRR 391 (398)
T ss_dssp HTCCEEECCC--TTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred hCCCEEEcCC--CchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999984 67899999 99999999999988777755554 7776654311 467888888888
Q ss_pred HHHHHc
Q 001947 367 LQETAI 372 (992)
Q Consensus 367 I~~~~~ 372 (992)
|++++.
T Consensus 392 l~~l~~ 397 (398)
T 3oti_A 392 IVERIS 397 (398)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 888753
No 27
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.91 E-value=3.5e-23 Score=240.13 Aligned_cols=337 Identities=10% Similarity=0.005 Sum_probs=201.3
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccC-CcccccccccChHHHHHH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 94 (992)
|+|+++ ++++.||++|+++||++|+++||+|+|++... +...+...++.+.....+. +.... .........+
T Consensus 1 MrIl~~-~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 73 (416)
T 1rrv_A 1 MRVLLS-VCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQE-GMPPPPPEEE-- 73 (416)
T ss_dssp CEEEEE-EESCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSCCGGGCCCT-TSCCCCHHHH--
T ss_pred CeEEEE-ecCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCeeeecCCCHHHHHhh-ccccchhHHH--
Confidence 356665 66789999999999999999999999998753 1111111112222211110 11000 0000111111
Q ss_pred HHHHhhccHHHhHHHHHHHHH--cCCCcEEEECC--Cch--HHHHHHHcCCcEEEEecCc-hhH----------------
Q 001947 95 YSETAVAPRKSILKDEVEWLN--SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDF---------------- 151 (992)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~--~~~--a~~aA~~~gIP~v~is~~~-~~~---------------- 151 (992)
..++. ....+..+.++ ..+||+||+|. .++ +..+|+.+|||++.+.... +..
T Consensus 74 -~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~p~~~~~~~~~~r 148 (416)
T 1rrv_A 74 -QRLAA----MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGV 148 (416)
T ss_dssp -HHHHH----HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTC
T ss_pred -HHHHH----HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcccCCCCCCCCCchH
Confidence 11111 11122233333 67999999985 455 7788999999999873321 110
Q ss_pred HHHHH----Hhhhc-cchHHHHHHHHhhccc------------cceeeecCCCCC--CCCCCceeecCcccccC-CCChH
Q 001947 152 IYAEY----VMAAG-HHHRSIVWQIAEDYSH------------CEFLIRLPGYCP--MPAFRDVIDVPLVVRRL-HKSRK 211 (992)
Q Consensus 152 ~~~~~----~~~~~-~~~~~i~~~l~~~y~~------------~d~ll~~~~~~~--~p~~~~v~~vp~~~~~~-~~~r~ 211 (992)
..... ..... .......+.+...+.. .-.+...+.... .+.. ++..+|+..... ...+.
T Consensus 149 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~vG~~~~~~~~~~~~ 227 (416)
T 1rrv_A 149 TDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDV-DAVQTGAWLLSDERPLPP 227 (416)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSC-CCEECCCCCCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCCCeEEccCccccCCCCCC-CeeeECCCccCccCCCCH
Confidence 00000 00000 0000001111111110 001222222221 1122 566677655431 12245
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCC--hhh----HHHhhCCCCcEEE-EeCCCCC---CCCCCeEEcCCCCCHHHHHhhcC
Q 001947 212 EVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASD 281 (992)
Q Consensus 212 e~r~~l~~~~d~~~Vlvs~Gg~~~--~~~----ll~~l~~~~~~~V-v~G~~~~---~l~~nv~v~~f~~~~p~lL~aaD 281 (992)
++.+++. .++++|||++||.+. ..+ +++.+...++.++ ++|.... .+++|+.+.+|++ +.++|++||
T Consensus 228 ~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~~d 304 (416)
T 1rrv_A 228 ELEAFLA--AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVN-FQALFRRVA 304 (416)
T ss_dssp HHHHHHH--SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCC-HHHHGGGSS
T ss_pred HHHHHHh--cCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccccccCCCCCEEEeccCC-hHHHhccCC
Confidence 5666653 345789999999874 222 3334433355554 4576532 2678999999886 678999999
Q ss_pred EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc--------
Q 001947 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY-------- 353 (992)
Q Consensus 282 lvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~-------- 353 (992)
+||||||+||++|++++|+|+|++|. +.||..||+++++.|+|+.+..++++++.+.++|+++ +++...
T Consensus 305 ~~v~~~G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 305 AVIHHGSAGTEHVATRAGVPQLVIPR--NTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAVAG 381 (416)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECCC--SBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHHTT
T ss_pred EEEecCChhHHHHHHHcCCCEEEccC--CCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 99999999999999999999999994 6799999999999999999988788889999999999 765321
Q ss_pred -cCCCCHHHHHHHHH-HHHHc
Q 001947 354 -EGGINGGEVAAHIL-QETAI 372 (992)
Q Consensus 354 -~~~~~G~~~aA~~I-~~~~~ 372 (992)
....+|. ++++.| ++++.
T Consensus 382 ~~~~~~~~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 382 MVLTDGAA-AAADLVLAAVGR 401 (416)
T ss_dssp TCCCCHHH-HHHHHHHHHHHC
T ss_pred HHhhcCcH-HHHHHHHHHHhc
Confidence 1467888 999999 88764
No 28
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.91 E-value=2.1e-24 Score=241.38 Aligned_cols=301 Identities=10% Similarity=0.037 Sum_probs=192.0
Q ss_pred CceEEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001947 494 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 573 (992)
Q Consensus 494 ~~~~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 573 (992)
.....++|||||+|+|+|+||++|+++|+.....+.+. ....+-+++ ..+.. +.
T Consensus 6 ~~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~---------------------~~~~~--~~-- 59 (317)
T 2gs8_A 6 PNVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVS---------------------FLPDT--AT-- 59 (317)
T ss_dssp CCEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE---------------------ECCTT--CC--
T ss_pred CCcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEE---------------------EEcCC--CC--
Confidence 34568999999999999999999999998887665553 233221111 10000 00
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHH
Q 001947 574 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 653 (992)
Q Consensus 574 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~v 653 (992)
..++.++.. .....|.|+++.++..+.+..+ .|++|.+.++||.++|||||||.+|
T Consensus 60 --~~~~~~~g~------------------~~~~~~~n~v~~~~~~~~~~~~----~g~~I~i~~~IP~~~GLGSSaA~~v 115 (317)
T 2gs8_A 60 --SDQFYINGI------------------LQNDEEHTKISAIIDQFRQPGQ----AFVKMETQNNMPTAAGLSSSSSGLS 115 (317)
T ss_dssp --SCEEEETTE------------------ECCHHHHHHHHHHHTTTCCTTC----CCEEEEEECCSCGGGCCCHHHHHHH
T ss_pred --eEEEEECCC------------------ccccchHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCCCchHHHHHHHH
Confidence 011121110 0113699999888775432222 5899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEE--EEeC
Q 001947 654 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFW--GIDS 731 (992)
Q Consensus 654 a~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~v--l~ds 731 (992)
|++.|++.++|.+++++||+++|+.+|. +...+++||. ++...+.... ...++|.++.++ ++++
T Consensus 116 A~~~al~~l~g~~ls~~el~~la~~~~G----------~~~~~~~GG~---~~~~~~~~~~-~~~~~~~~~~~~v~i~~~ 181 (317)
T 2gs8_A 116 ALVKACDQLFDTQLDQKALAQKAKFASG----------SSSRSFFGPV---AAWDKDSGAI-YKVETDLKMAMIMLVLNA 181 (317)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHG----------GGGGGGSCSE---EEECTTTCCE-EECCCCCCEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcc----------hhHhhhcCCh---heEeeCCCce-eEEEccccccEEEEEEEC
Confidence 9999999999999999999999998753 2356889994 3333222222 234555566643 3365
Q ss_pred CCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhc
Q 001947 732 GIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKN 811 (992)
Q Consensus 732 gi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 811 (992)
+.++......|+. .
T Consensus 182 ~~~~~~tt~~~~~------------------------------------------------------------------~ 195 (317)
T 2gs8_A 182 AKKPISSREGMKL------------------------------------------------------------------C 195 (317)
T ss_dssp SSCCSCHHHHHHH------------------------------------------------------------------H
T ss_pred CCcCcccHHHHHH------------------------------------------------------------------H
Confidence 5443221111110 0
Q ss_pred CCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhh-c
Q 001947 812 IPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-C 890 (992)
Q Consensus 812 lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~-~ 890 (992)
+|... ...+++.| ...|+..++.+|.++ |++.||++|+++|..|.+ +
T Consensus 196 ~~~~~-------------------------~~~~~~~~---~~~~~~~~~~al~~~----d~~~lg~~~~~~~~~l~~~~ 243 (317)
T 2gs8_A 196 RDTST-------------------------TFDQWVEQ---SAIDYQHMLTYLKTN----NFEKVGQLTEANALAMHATT 243 (317)
T ss_dssp HHHCT-------------------------THHHHHHH---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCH-------------------------HHHHHHHH---HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHh
Confidence 00000 00112222 256788999999986 999999999999888887 3
Q ss_pred CCCCch-------HHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCC
Q 001947 891 GLGSDG-------TDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLP 963 (992)
Q Consensus 891 ~vs~~~-------lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~ 963 (992)
..++|+ +.++.+.+.++. ..|+.|+.|+|+| +|++++.+++. .+++.+++. + .+
T Consensus 244 ~~~~p~~~~l~~~~~~i~~~~~~~~--------~~G~~~~~~SGaG--ptv~~l~~~~~-~~~v~~~l~----~----~~ 304 (317)
T 2gs8_A 244 KTANPPFSYLTKESYQAMEAVKELR--------QEGFACYFTMDAG--PNVKVLCLEKD-LAQLAERLG----K----NY 304 (317)
T ss_dssp TTSSSCCCSCCHHHHHHHHHHHHHH--------HTTCCEEEECCSS--SCEEEEEEGGG-HHHHHHHHH----T----TS
T ss_pred hccCCCceeEhHHHHHHHHHHHHHH--------hcCCcEEEEecCC--CeEEEEEcHHH-HHHHHHHHh----c----CC
Confidence 444454 456655444321 1478889999887 99988875432 234444443 2 47
Q ss_pred eEEee-cCCCCce
Q 001947 964 LIIEG-SSPGAGK 975 (992)
Q Consensus 964 ~~~~~-~~~Ga~~ 975 (992)
+++++ .++|+++
T Consensus 305 ~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 305 RIIVSKTKDLPDV 317 (317)
T ss_dssp EEEEEEBCCCCCC
T ss_pred eEEEEecCCCCCC
Confidence 88887 7999864
No 29
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.91 E-value=1.6e-23 Score=239.94 Aligned_cols=334 Identities=11% Similarity=0.039 Sum_probs=198.9
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccC--Cccc------ccccccC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC--GAVQ------ADALTVD 87 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--g~~~------~~~~~~~ 87 (992)
|+|+++ ++.+.||++++++|+++|+++||+|+|++... + ...+...++.+....... +... +.....+
T Consensus 1 MrIl~~-~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 2p6p_A 1 MRILFV-AAGSPATVFALAPLATAARNAGHQVVMAANQD-M--GPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSD 76 (384)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEECGG-G--HHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCS
T ss_pred CEEEEE-eCCccchHhHHHHHHHHHHHCCCEEEEEeCHH-H--HHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcc
Confidence 356654 56778999999999999999999999998643 1 111111112222211111 0000 0000000
Q ss_pred hHHHHHHH-HHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEe-cCchhHHHHHHHhhhccch
Q 001947 88 RLASLEKY-SETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVT-NFSWDFIYAEYVMAAGHHH 164 (992)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is-~~~~~~~~~~~~~~~~~~~ 164 (992)
. .....+ ..++.......+.+..+++++++||+||+|. .+++..+|+.+|||++.+. +..+...+..++
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~------- 148 (384)
T 2p6p_A 77 P-VAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGA------- 148 (384)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCTTTHHHH-------
T ss_pred h-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccchhhHHH-------
Confidence 0 111111 1111111122455667788899999999996 6677888999999998873 221100000000
Q ss_pred HHHHHHHHhhccc-----cceeee-cCCCCCCC-CCC--ceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCCCC
Q 001947 165 RSIVWQIAEDYSH-----CEFLIR-LPGYCPMP-AFR--DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (992)
Q Consensus 165 ~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p-~~~--~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~ 235 (992)
....+++...+.. ++..+. .+.....+ ..+ .+..+|.. .. .+..+++...+++++||+++|+.+.
T Consensus 149 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~v~v~~Gs~~~ 222 (384)
T 2p6p_A 149 DAELRPELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVATS--RQ----CPLEPWMYTRDTRQRVLVTSGSRVA 222 (384)
T ss_dssp HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTSCCCEECCCCCCC--CC----CBCCHHHHCCCSSCEEEEECSSSSS
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCCCCCCceEecCCC--CC----CCCCchhhcCCCCCEEEEECCCCCc
Confidence 0011122222211 222221 11111111 011 12222211 00 1111233223567899999999864
Q ss_pred h----------hhHHHhhCCCCcEEEEe-CCCCCC----CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCC
Q 001947 236 G----------WKLKEEYLPSGWKCLVC-GASDSQ----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (992)
Q Consensus 236 ~----------~~ll~~l~~~~~~~Vv~-G~~~~~----l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~Gv 300 (992)
. ..+++++...++.+++. |....+ +++|+.+ +|++ +.++|++||+||+|+|+||++||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~-~~~~l~~~d~~v~~~G~~t~~Ea~~~G~ 300 (384)
T 2p6p_A 223 KESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARV-GWTP-LDVVAPTCDLLVHHAGGVSTLTGLSAGV 300 (384)
T ss_dssp CCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTSEE-ECCC-HHHHGGGCSEEEECSCTTHHHHHHHTTC
T ss_pred cccccccHHHHHHHHHHHhcCCcEEEEEeCCCCHHhhCCCCCceEE-cCCC-HHHHHhhCCEEEeCCcHHHHHHHHHhCC
Confidence 2 13344454456776654 532111 5789999 9884 6799999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001947 301 PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (992)
Q Consensus 301 P~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~I~~~~ 371 (992)
|+|++|. ..||..|++++++.|+|+.+..++++++.+.++|.++++++.... ...+|++++++.|+.++
T Consensus 301 P~v~~p~--~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 301 PQLLIPK--GSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp CEEECCC--SHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CEEEccC--cccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999994 679999999999999999998877888999999999998764311 46678888888887765
No 30
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.91 E-value=5.7e-24 Score=232.34 Aligned_cols=166 Identities=13% Similarity=0.140 Sum_probs=131.2
Q ss_pred eEEEEcCccccc----cccccc-cCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 001947 496 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 570 (992)
Q Consensus 496 ~~~~~APGRv~L----~GeH~d-y~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 570 (992)
++.++||||||| +|+|.| |++..++.++|+++.++ +++ +.++ ++.+
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i---------------------~i~~----- 54 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVL---------------------RVET----- 54 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSC---------------------EEEE-----
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeE---------------------EEEe-----
Confidence 567899999999 899999 99999999999999999 887 3221 1211
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHH
Q 001947 571 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 650 (992)
Q Consensus 571 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 650 (992)
..+ ...|.|+++.++..+.+..|.. .|++|.|+++||.++|||||||
T Consensus 55 -----------~~~--------------------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGsSsa 101 (271)
T 2v8p_A 55 -----------NIG--------------------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGGGSS 101 (271)
T ss_dssp -----------SSC--------------------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCHHHH
T ss_pred -----------CCC--------------------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCchHHH
Confidence 010 1257899999998887777764 6999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEe
Q 001947 651 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 730 (992)
Q Consensus 651 ~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~d 730 (992)
.++|++.|++++++.++++++|+++|.++|. |..++++||. ++...+.... +++++|.++.+++++
T Consensus 102 ~a~a~l~al~~l~~~~l~~~el~~la~~~e~----------dv~~~~~gg~---~~~~g~g~~~-~~l~~~~~~~~vl~~ 167 (271)
T 2v8p_A 102 NLAVVLKKVNELLGSPLSEEELRELVGSISA----------DAPFFLLGKS---AIGRGKGEVL-EPVETEISGKITLVI 167 (271)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT----------TTGGGGTCSE---EEEETTTTEE-EECCCCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHHhcCCe---EEEEEcCCEE-EEccCCCCcEEEEEe
Confidence 9999999999999999999999999999982 6678888884 3333233222 556644489999999
Q ss_pred CCCcccc
Q 001947 731 SGIRHSV 737 (992)
Q Consensus 731 sgi~~~~ 737 (992)
++++.+|
T Consensus 168 p~~~~sT 174 (271)
T 2v8p_A 168 PQVSSST 174 (271)
T ss_dssp CSSCCCH
T ss_pred CCCCCCH
Confidence 8765443
No 31
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.91 E-value=4.4e-23 Score=240.07 Aligned_cols=343 Identities=15% Similarity=0.105 Sum_probs=202.0
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeeccc--CCcccccccccChHH
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLA 90 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~ 90 (992)
|+.++|+|+ ++++.||++++++|+++|+++||+|+|++.... ...+...++.+...... .+.........+...
T Consensus 5 m~m~kIl~~-~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (430)
T 2iyf_A 5 TTPAHIAMF-SIAAHGHVNPSLEVIRELVARGHRVTYAIPPVF---ADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLD 80 (430)
T ss_dssp ---CEEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGG---HHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHH
T ss_pred cccceEEEE-eCCCCccccchHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEEcCCcCccccccccccchhhHH
Confidence 444677664 667899999999999999999999999986531 11111112223222111 111100000111111
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc--hhHHHH----HHH------
Q 001947 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS--WDFIYA----EYV------ 157 (992)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~--~~~~~~----~~~------ 157 (992)
.+..+.. .....+....+++++++||+||+|+ .+++..+|+.+|||++.+.... |..... .+.
T Consensus 81 ~~~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (430)
T 2iyf_A 81 NVEPFLN----DAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQT 156 (430)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHS
T ss_pred HHHHHHH----HHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccc
Confidence 1111111 1223455667888999999999997 4678889999999998874322 210000 000
Q ss_pred hhhccchHHHHHHHHhhc----------cccceeeec-CCCCCCC--CC-Cc-eeecCcccccCCCChHHHHHHhCCCCC
Q 001947 158 MAAGHHHRSIVWQIAEDY----------SHCEFLIRL-PGYCPMP--AF-RD-VIDVPLVVRRLHKSRKEVRKELGIEDD 222 (992)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y----------~~~d~ll~~-~~~~~~p--~~-~~-v~~vp~~~~~~~~~r~e~r~~l~~~~d 222 (992)
+.. .......+.+...+ ..++.++.. +.....+ .+ .+ ++.+|+.... +.+..++....++
T Consensus 157 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~----~~~~~~~~~~~~~ 231 (430)
T 2iyf_A 157 ERG-RAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGD----RAEEGGWQRPAGA 231 (430)
T ss_dssp HHH-HHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC---------CCCCCCCTTC
T ss_pred hHH-HHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCC----CCCCCCCccccCC
Confidence 000 00000111111111 122333321 1111110 11 23 5666652211 0000011111346
Q ss_pred CcEEEEEcCCCCCh-hh----HHHhhCC-CCcEE-EEeCCCCC-----CCCCCeEEcCCCCCHHHHHhhcCEEEecCChh
Q 001947 223 VKLLILNFGGQPAG-WK----LKEEYLP-SGWKC-LVCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYG 290 (992)
Q Consensus 223 ~~~Vlvs~Gg~~~~-~~----ll~~l~~-~~~~~-Vv~G~~~~-----~l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~ 290 (992)
+++||+++|+.+.. .+ +++.+.. +++.+ +++|.+.. .+++|+++.+|++++ ++|++||+||+|+|++
T Consensus 232 ~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~-~~l~~ad~~v~~~G~~ 310 (430)
T 2iyf_A 232 EKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQL-AILRQADLFVTHAGAG 310 (430)
T ss_dssp SEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHH-HHHTTCSEEEECCCHH
T ss_pred CCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHH-HHhhccCEEEECCCcc
Confidence 78999999998732 22 3334544 36766 46776532 157899999998776 8999999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHH
Q 001947 291 TVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGE 361 (992)
Q Consensus 291 Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~ 361 (992)
|++||+++|+|+|++|. ..||..|++.+++.|+|+.+..++++++.|.++|.++++++.... ...+|.+
T Consensus 311 t~~Ea~~~G~P~i~~p~--~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
T 2iyf_A 311 GSQEGLATATPMIAVPQ--AVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR 388 (430)
T ss_dssp HHHHHHHTTCCEEECCC--SHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCCCEEECCC--ccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999984 468999999999999999998887788999999999998654211 2346888
Q ss_pred HHHHHHHHHH
Q 001947 362 VAAHILQETA 371 (992)
Q Consensus 362 ~aA~~I~~~~ 371 (992)
++++.|++++
T Consensus 389 ~~~~~i~~~~ 398 (430)
T 2iyf_A 389 RAADLIEAEL 398 (430)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 32
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.91 E-value=1.6e-23 Score=240.50 Aligned_cols=338 Identities=12% Similarity=0.063 Sum_probs=197.5
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeee-cccCCcc--------cc-cccc
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKV-LLDCGAV--------QA-DALT 85 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~~--------~~-~~~~ 85 (992)
|+|+|++. .+.||++++++|+++|+++||+|+|++... + ...+...++.+... +.+.... .. ....
T Consensus 2 MrIl~~~~-~~~gh~~~~~~la~~L~~~GheV~v~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (391)
T 3tsa_A 2 MRVLVVPL-PYPTHLMAMVPLCWALQASGHEVLIAAPPE-L--QATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFG 77 (391)
T ss_dssp CEEEEECC-SCHHHHHTTHHHHHHHHHTTCEEEEEECHH-H--HHHHHHBTCEEEEC--------------CCSCCGGGG
T ss_pred cEEEEEcC-CCcchhhhHHHHHHHHHHCCCEEEEecChh-h--HHHHHhCCCceeeecCCccchhhhhhhcccccccccc
Confidence 67877654 589999999999999999999999998632 1 11110001111111 1100000 00 0000
Q ss_pred cChHHHHHH-HHHHh---hccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-CchhHHHHHHHhh
Q 001947 86 VDRLASLEK-YSETA---VAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FSWDFIYAEYVMA 159 (992)
Q Consensus 86 ~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~-~~~~~~~~~~~~~ 159 (992)
......+.. +.... ....+..+.+..+++++++||+||+|. .+.+.++|+.+|||++.+.. +... ...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~--~~~~~~- 154 (391)
T 3tsa_A 78 QRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPT--AGPFSD- 154 (391)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCT--TTHHHH-
T ss_pred cccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccc--cccccc-
Confidence 000011111 11110 001111266778889999999999996 66678889999999988732 2110 000000
Q ss_pred hccchHHHHHHHHhhcccc-----ceeee-cCCCCCCCC--C-CceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEc
Q 001947 160 AGHHHRSIVWQIAEDYSHC-----EFLIR-LPGYCPMPA--F-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (992)
Q Consensus 160 ~~~~~~~i~~~l~~~y~~~-----d~ll~-~~~~~~~p~--~-~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~ 230 (992)
....++...+ ..|... +..+. .+.....+. . ..++.+|... ......++..++++++|++++
T Consensus 155 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~vlv~~ 225 (391)
T 3tsa_A 155 --RAHELLDPVC-RHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNG------SGAFPAWGAARTSARRVCICM 225 (391)
T ss_dssp --HHHHHHHHHH-HHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCCC------CEECCGGGSSCCSSEEEEEEC
T ss_pred --hHHHHHHHHH-HHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCCC------CcCCCchhhcCCCCCEEEEEc
Confidence 0011111122 222111 22222 222111110 0 0111222110 001112334456788999999
Q ss_pred CCCCC---h-hhHHHh---hCC-CCcEEEEeCCCC-C----CCCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHH
Q 001947 231 GGQPA---G-WKLKEE---YLP-SGWKCLVCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297 (992)
Q Consensus 231 Gg~~~---~-~~ll~~---l~~-~~~~~Vv~G~~~-~----~l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~ 297 (992)
|+... . ..+++. ... +++.+++.+... . .+++|+++.+|.+ ..++|++||+||+|+|++|++||++
T Consensus 226 G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~~G~~t~~Ea~~ 304 (391)
T 3tsa_A 226 GRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP-LNLFLRTCELVICAGGSGTAFTATR 304 (391)
T ss_dssp CHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCC-GGGTGGGCSEEEECCCHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcchhhcccCCCCEEEeccCC-HHHHHhhCCEEEeCCCHHHHHHHHH
Confidence 98743 1 222322 123 367777664332 1 1578999999875 4688999999999999999999999
Q ss_pred cCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec--CCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHH
Q 001947 298 YKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR--RDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (992)
Q Consensus 298 ~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~--~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~ 366 (992)
+|+|+|++|. ..||..|++.+++.|+|+.+.. ++.+++.|.+++.++++++.... ...++.+++++.
T Consensus 305 ~G~P~v~~p~--~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 3tsa_A 305 LGIPQLVLPQ--YFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRT 382 (391)
T ss_dssp TTCCEEECCC--STTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred hCCCEEecCC--cccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999984 6799999999999999999987 67788999999999998764321 467788889998
Q ss_pred HHHHHc
Q 001947 367 LQETAI 372 (992)
Q Consensus 367 I~~~~~ 372 (992)
|++++.
T Consensus 383 i~~~~~ 388 (391)
T 3tsa_A 383 LENTAA 388 (391)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887653
No 33
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.90 E-value=3.2e-22 Score=232.92 Aligned_cols=326 Identities=12% Similarity=0.074 Sum_probs=199.2
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHCC--CcEEEEeCCC--Ccccccc-cCCCceeeeeecccCCcccccccccCh
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP--DFVFTSE-IQSPRLFIRKVLLDCGAVQADALTVDR 88 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--heV~~~~~~~--~~~~~~~-i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (992)
++.+|++ ++.++.||++|.+.||+.|..+| +.|+|++... ..+.... ...+.+.+... ..|+........+.
T Consensus 12 ~~~hvv~-~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~i--pdglp~~~~~~~~~ 88 (454)
T 3hbf_A 12 NLLHVAV-LAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV--HDGLPKGYVSSGNP 88 (454)
T ss_dssp CCCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEEC--CCCCCTTCCCCSCT
T ss_pred CCCEEEE-EcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEec--CCCCCCCccccCCh
Confidence 3455543 57899999999999999999999 9999997641 1111111 00123444432 12322110001121
Q ss_pred HHHHHHHHHHhhccHHHhHHHHH-HHHHc--CCCcEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHHHH-------
Q 001947 89 LASLEKYSETAVAPRKSILKDEV-EWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAE------- 155 (992)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~-~~L~~--~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~~~--~~~~~------- 155 (992)
...+..+.... ...+++.. +++++ .+||+||+|. .+|+..+|+.+|||.+.+...... ..+.+
T Consensus 89 ~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~ 164 (454)
T 3hbf_A 89 REPIFLFIKAM----QENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREK 164 (454)
T ss_dssp THHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhh
Confidence 11222222211 11222222 23332 4789999997 778999999999999987332211 00000
Q ss_pred -------------HHhhhcc------------c-hHHHHH---HHHhhccccceeeecCCCCC--------CCCCCceee
Q 001947 156 -------------YVMAAGH------------H-HRSIVW---QIAEDYSHCEFLIRLPGYCP--------MPAFRDVID 198 (992)
Q Consensus 156 -------------~~~~~~~------------~-~~~i~~---~l~~~y~~~d~ll~~~~~~~--------~p~~~~v~~ 198 (992)
+++..+. . .....+ ...+....++.++..++... .+.++++..
T Consensus 165 ~~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~ 244 (454)
T 3hbf_A 165 TGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLN 244 (454)
T ss_dssp CCHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEE
T ss_pred cCCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEE
Confidence 0110000 0 001111 12223333444443222111 123467888
Q ss_pred cCccccc-C---CCChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEE-eCCCCC-----C----
Q 001947 199 VPLVVRR-L---HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS-----Q---- 259 (992)
Q Consensus 199 vp~~~~~-~---~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~Vv-~G~~~~-----~---- 259 (992)
|||+... . .....++.+|++..+++++|||++||.+.. . +++..|...++.+++ +|.... .
T Consensus 245 vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~~~~lp~~~~~~ 324 (454)
T 3hbf_A 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLER 324 (454)
T ss_dssp CCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCHHHHSCTTHHHH
T ss_pred ECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhcCCHhHHhh
Confidence 9987542 1 112346778888777889999999998863 1 233345444555543 454321 1
Q ss_pred CCCCeEEcCCCCCHHHHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCCCh
Q 001947 260 LPPNFIKLPKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDLLT 336 (992)
Q Consensus 260 l~~nv~v~~f~~~~p~lL~aaD--lvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~-G~Gi~v~~~~~~~ 336 (992)
.++|+.+++|.+. .++|++++ +||||||+||++|++++|+|+|++| .+.||+.||+++++. |+|+.+...+++.
T Consensus 325 ~~~~~~vv~w~Pq-~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P--~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~ 401 (454)
T 3hbf_A 325 TKTKGKIVAWAPQ-VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRP--FFGDQGLNTILTESVLEIGVGVDNGVLTK 401 (454)
T ss_dssp TTTTEEEESSCCH-HHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTSCSEEECGGGSCCH
T ss_pred cCCceEEEeeCCH-HHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCc--ccccHHHHHHHHHHhhCeeEEecCCCCCH
Confidence 3568888876543 37899988 9999999999999999999999999 578999999999994 9999999888999
Q ss_pred hhHHHHHHHHhhC
Q 001947 337 GHWKPYLERAISL 349 (992)
Q Consensus 337 ~~l~~al~~ll~~ 349 (992)
+.+.++|++++++
T Consensus 402 ~~l~~av~~ll~~ 414 (454)
T 3hbf_A 402 ESIKKALELTMSS 414 (454)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999964
No 34
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.90 E-value=4e-23 Score=238.67 Aligned_cols=343 Identities=15% Similarity=0.124 Sum_probs=202.4
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecc--cCCcc--------cccc
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL--DCGAV--------QADA 83 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~g~~--------~~~~ 83 (992)
.+|+|+|+ ++.+.||++++++|+++|+++||+|+|++... +...+...++.+..... ..++. ....
T Consensus 19 ~~MrIl~~-~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 3otg_A 19 RHMRVLFA-SLGTHGHTYPLLPLATAARAAGHEVTFATGEG---FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSP 94 (412)
T ss_dssp CSCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCC
T ss_pred ceeEEEEE-cCCCcccHHHHHHHHHHHHHCCCEEEEEccHH---HHHHHHhcCCceeecCcccccchhhhhhhhhcccCC
Confidence 34778765 46688999999999999999999999998742 12111111222222110 00000 0000
Q ss_pred cccChHHHHHHHHHHhhcc-HHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcEEEEe-cCc-hhHHHHHHHhh
Q 001947 84 LTVDRLASLEKYSETAVAP-RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVT-NFS-WDFIYAEYVMA 159 (992)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is-~~~-~~~~~~~~~~~ 159 (992)
...+....+..+...+... ....+.+..+++++++||+||+|. .+.+.++|+.+|||+|.+. ++. |.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~--- 171 (412)
T 3otg_A 95 EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRSI--- 171 (412)
T ss_dssp TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHHHH---
T ss_pred ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhHHH---
Confidence 0001111111111111111 122346667888999999999996 5667788899999998873 221 21111110
Q ss_pred hccchHHHHHHHHhhc----------cccceeee-cCCCCCCCC-CCceeecCcccccCCCChHHHHHH-hCCCCCCcEE
Q 001947 160 AGHHHRSIVWQIAEDY----------SHCEFLIR-LPGYCPMPA-FRDVIDVPLVVRRLHKSRKEVRKE-LGIEDDVKLL 226 (992)
Q Consensus 160 ~~~~~~~i~~~l~~~y----------~~~d~ll~-~~~~~~~p~-~~~v~~vp~~~~~~~~~r~e~r~~-l~~~~d~~~V 226 (992)
... .......+ ..++..+. .+.....+. .....+.|....... .+.+..++ ...++++++|
T Consensus 172 ----~~~-~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 245 (412)
T 3otg_A 172 ----EEE-VRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFA-EQGDLPAWLSSRDTARPLV 245 (412)
T ss_dssp ----HHH-HHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCC-CCCCCCGGGGGSCTTSCEE
T ss_pred ----HHH-HHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCC-CCCCCCCccccccCCCCEE
Confidence 001 11111111 11222222 211111000 000111111111100 01111122 1335678899
Q ss_pred EEEcCCCCCh-hh----HHHhhCCCCcEEEE-eCCCC-CC----CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHH
Q 001947 227 ILNFGGQPAG-WK----LKEEYLPSGWKCLV-CGASD-SQ----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEA 295 (992)
Q Consensus 227 lvs~Gg~~~~-~~----ll~~l~~~~~~~Vv-~G~~~-~~----l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Ea 295 (992)
++++|+.+.. .. +++.+...++.+++ +|... .+ +++|+++.+|+ +++++|+.||+||+++|++|++||
T Consensus 246 lv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~-~~~~~l~~ad~~v~~~g~~t~~Ea 324 (412)
T 3otg_A 246 YLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV-PQAALLPHVDLVVHHGGSGTTLGA 324 (412)
T ss_dssp EEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCC-CHHHHGGGCSEEEESCCHHHHHHH
T ss_pred EEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCC-CHHHHHhcCcEEEECCchHHHHHH
Confidence 9999998532 22 23334344665554 45443 21 57899999999 689999999999999999999999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHH
Q 001947 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (992)
Q Consensus 296 l~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~---------~~~~G~~~aA~~ 366 (992)
+++|+|+|++|. ..||..|++.+++.|+|..+..++++++.|.++|.++++++.... ...++.+++++.
T Consensus 325 ~a~G~P~v~~p~--~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
T 3otg_A 325 LGAGVPQLSFPW--AGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRL 402 (412)
T ss_dssp HHHTCCEEECCC--STTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTT
T ss_pred HHhCCCEEecCC--chhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999985 478999999999999999999888888999999999998764321 345678888888
Q ss_pred HHHHHc
Q 001947 367 LQETAI 372 (992)
Q Consensus 367 I~~~~~ 372 (992)
|++++.
T Consensus 403 ~~~l~~ 408 (412)
T 3otg_A 403 LPGFAS 408 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887763
No 35
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.90 E-value=7.9e-22 Score=232.76 Aligned_cols=318 Identities=14% Similarity=0.089 Sum_probs=188.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHC-CCcEEEEeCCCCcccccccC------CCceeeeeecccCCcccccccc-cC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAPDFVFTSEIQ------SPRLFIRKVLLDCGAVQADALT-VD 87 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~-GheV~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~-~~ 87 (992)
++|++ ++.++.||++|.++||++|.++ ||+|+|++..... +...+. .+.+.+..... +.. ++... .+
T Consensus 7 ~~vl~-~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~~~i~~~~l~~--~~~-~~~~~~~~ 81 (480)
T 2vch_A 7 PHVAI-IPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP-PSKAQRTVLDSLPSSISSVFLPP--VDL-TDLSSSTR 81 (480)
T ss_dssp CEEEE-ECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSS-CC-CHHHHHC-CCTTEEEEECCC--CCC-TTSCTTCC
T ss_pred cEEEE-ecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcc-hhhhhhhhccccCCCceEEEcCC--CCC-CCCCCchh
Confidence 44543 5778999999999999999998 9999999875421 111111 12344444211 111 01000 11
Q ss_pred hHHHHHHHHHHhhccHHHhHHHHHHHHHc----CCC-cEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHHH--H-H
Q 001947 88 RLASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYA--E-Y 156 (992)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~a~~aA~~~gIP~v~is~~~~~--~~~~--~-~ 156 (992)
. ...+..... . ......+++++ .+| |+||+|. .+++..+|+.+|||.+.+...... ..+. . .
T Consensus 82 ~---~~~~~~~~~-~---~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 154 (480)
T 2vch_A 82 I---ESRISLTVT-R---SNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL 154 (480)
T ss_dssp H---HHHHHHHHH-T---THHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHH-h---hhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHH
Confidence 1 111111111 1 11222333433 578 9999997 677888999999999887433211 0100 0 0
Q ss_pred ----------------Hhhhc--------cch-H---HHHHH---HHhhccccceeeecCCCC-----------CCCCCC
Q 001947 157 ----------------VMAAG--------HHH-R---SIVWQ---IAEDYSHCEFLIRLPGYC-----------PMPAFR 194 (992)
Q Consensus 157 ----------------~~~~~--------~~~-~---~i~~~---l~~~y~~~d~ll~~~~~~-----------~~p~~~ 194 (992)
.+... ..+ + ..... ....+..+..++..++.. +.+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~ 234 (480)
T 2vch_A 155 DETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKP 234 (480)
T ss_dssp HHHCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCC
T ss_pred HhcCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCC
Confidence 00000 000 0 01111 111222232222212211 111135
Q ss_pred ceeecCcccccCC-----CChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEE-eCCCC------
Q 001947 195 DVIDVPLVVRRLH-----KSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD------ 257 (992)
Q Consensus 195 ~v~~vp~~~~~~~-----~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~Vv-~G~~~------ 257 (992)
++..+||+..... ..+.++.+|++-.+++++|||+|||.... . ++++++...++.+++ ++...
T Consensus 235 ~v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~ 314 (480)
T 2vch_A 235 PVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSS 314 (480)
T ss_dssp CEEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTT
T ss_pred cEEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCcccccccc
Confidence 7888988754321 12346777777656789999999998752 2 334445445665553 34321
Q ss_pred -------C----CCCCCe--------EEc-CCCCCHHHHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHH
Q 001947 258 -------S----QLPPNF--------IKL-PKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPF 315 (992)
Q Consensus 258 -------~----~l~~nv--------~v~-~f~~~~p~lL~aaD--lvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~ 315 (992)
. .+|+|+ .++ +|.+.+ ++|++++ +||||||+||++|++++|||||++| .+.||+.
T Consensus 315 ~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~-~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P--~~~DQ~~ 391 (480)
T 2vch_A 315 YFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQA-QVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP--LYAEQKM 391 (480)
T ss_dssp TTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHH-HHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHH
T ss_pred ccccccccchhhhcCHHHHHHhCCCeEEEeCccCHH-HHhCCCCcCeEEecccchhHHHHHHcCCCEEecc--ccccchH
Confidence 1 267775 333 354322 7998877 8999999999999999999999999 5789999
Q ss_pred HHHHH-HHcCcEEEEecC---CCChhhHHHHHHHHhh
Q 001947 316 LRNML-EFYQGGVEMIRR---DLLTGHWKPYLERAIS 348 (992)
Q Consensus 316 NA~~l-e~~G~Gi~v~~~---~~~~~~l~~al~~ll~ 348 (992)
||+++ ++.|+|+.+... .++++.+.++|+++++
T Consensus 392 na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 392 NAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhc
Confidence 99997 799999999765 6889999999999996
No 36
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.90 E-value=1.4e-22 Score=224.48 Aligned_cols=289 Identities=16% Similarity=0.182 Sum_probs=206.6
Q ss_pred eEEEEcCccccc----cccccc-cCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 001947 496 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 570 (992)
Q Consensus 496 ~~~~~APGRv~L----~GeH~d-y~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 570 (992)
.+.++||+|+|| .|.+.| |+.-..+-++|+.+-++.+.+.++.. +.+...
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~---------------------i~~~g~---- 59 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLS---------------------LELVGE---- 59 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCE---------------------EEEEST----
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCE---------------------EEEeCC----
Confidence 367899999999 999999 99888888999999888888764321 222100
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHH
Q 001947 571 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 650 (992)
Q Consensus 571 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 650 (992)
. ..++ + .+..|+++.++..+++.+|.. .|++|.|.++||.++|||||||
T Consensus 60 ------~---~~~~-------------------p-~~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~~~GLGsssa 108 (306)
T 3pyf_A 60 ------G---ADQL-------------------P-TDERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPVAGGMAGGSA 108 (306)
T ss_dssp ------T---GGGS-------------------C-CSTTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCTTSSSCHHHH
T ss_pred ------C---ccCC-------------------C-CCCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCCCCCcchHHH
Confidence 0 0011 1 123789999998887777865 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEe
Q 001947 651 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 730 (992)
Q Consensus 651 ~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~d 730 (992)
.++|++.|++.+++.++++++|+++|.++| .|..++++||. .+...+... ..+++.++++.+++++
T Consensus 109 ~a~a~l~al~~~~~~~l~~~~l~~la~~~~----------~Dv~~~~~Gg~---~~~~g~ge~-~~~l~~~~~~~~vl~~ 174 (306)
T 3pyf_A 109 DAAAVLVAMNSLWELNVPRRDLRMLAARLG----------SDVPFALHGGT---ALGTGRGEE-LATVLSRNTFHWVLAF 174 (306)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHC----------TTHHHHHHBSE---EEECSSSSC-CEEECCSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCCceeecCce---EEEEeeCCe-EEEccCCCCcEEEEEE
Confidence 999999999999999999999999999987 28889999994 333333323 3667777789999999
Q ss_pred CCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhh
Q 001947 731 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 810 (992)
Q Consensus 731 sgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 810 (992)
++++.+|.. .| +.+. ..++ . .
T Consensus 175 P~~~vsT~~-a~------------------------------------------~~l~------~~~~-------~---~ 195 (306)
T 3pyf_A 175 ADSGLLTSA-VY------------------------------------------NELD------RLRE-------V---G 195 (306)
T ss_dssp CSSCCCHHH-HH------------------------------------------HHHH------HHHH-------H---S
T ss_pred CCCCCcHHH-HH------------------------------------------Hhhh------hhcc-------c---c
Confidence 887766531 00 0000 0000 0 0
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhhc
Q 001947 811 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSAC 890 (992)
Q Consensus 811 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~~ 890 (992)
.++ ...++..+..+|.++ |++.||++|.+.-+.++.
T Consensus 196 ~~~---------------------------------------~~~~~~~~~~al~~~----d~~~l~~~l~n~le~~~~- 231 (306)
T 3pyf_A 196 DPP---------------------------------------RLGEPGPVLAALAAG----DPDQLAPLLGNEMQAAAV- 231 (306)
T ss_dssp CCC---------------------------------------CCCCHHHHHHHHHHT----CHHHHGGGCEETTHHHHH-
T ss_pred ccc---------------------------------------cccCHHHHHHHHHhC----CHHHHHHHhccchHHHHH-
Confidence 000 001356777888876 999999988422233332
Q ss_pred CCCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCeEEee--
Q 001947 891 GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-- 968 (992)
Q Consensus 891 ~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-- 968 (992)
..+|+++++++.+++ .|++|++|||+| +|++++.++. +..+++.+..+ +.|....++..
T Consensus 232 -~~~P~l~~i~~~~~~-----------~Ga~ga~mSGsG--ptvfal~~~~----~~a~~~~~~l~-~~g~~~~v~~~~~ 292 (306)
T 3pyf_A 232 -SLDPALARALRAGVE-----------AGALAGIVSGSG--PTCAFLCTSA----SSAIDVGAQLS-GAGVCRTVRVATG 292 (306)
T ss_dssp -HHCTHHHHHHHHHHH-----------TTCSEEEECTTS--SEEEEEESSH----HHHHHHHHHHH-HTTSSSEEEEEEE
T ss_pred -HhChHHHHHHHHHHh-----------cCCCEEEEcCcc--hhheEEeCCH----HHHHHHHHHHH-hcCCcceEEEeec
Confidence 258999999999987 699999999998 9999887653 23455555555 44666777775
Q ss_pred cCCCCcee
Q 001947 969 SSPGAGKF 976 (992)
Q Consensus 969 ~~~Ga~~~ 976 (992)
+..|+++.
T Consensus 293 ~~~Ga~v~ 300 (306)
T 3pyf_A 293 PVPGARVV 300 (306)
T ss_dssp CCBCSEEC
T ss_pred CCCCCEEe
Confidence 68888764
No 37
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.89 E-value=3e-22 Score=234.88 Aligned_cols=325 Identities=12% Similarity=0.116 Sum_probs=188.9
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcE--EEEeCCC--CcccccccC--CCceeeeeecccCCcccccccccChH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDV--HVVTGAP--DFVFTSEIQ--SPRLFIRKVLLDCGAVQADALTVDRL 89 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV--~~~~~~~--~~~~~~~i~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (992)
.+|++ ++.++.||++|.++||+.|.++||.| +|++... ......... .+.+.+... ..|+........+..
T Consensus 8 ~hvv~-~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i--~~glp~~~~~~~~~~ 84 (456)
T 2c1x_A 8 PHVAV-LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDI--SDGVPEGYVFAGRPQ 84 (456)
T ss_dssp CEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEEC--CCCCCTTCCCCCCTT
T ss_pred CEEEE-EcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeC--CCCCCCcccccCChH
Confidence 34433 57889999999999999999998776 5565421 111111000 123333332 112221100000111
Q ss_pred HHHHHHHHHhhccHHHhHHHHH-HHHH--cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCch--h--HHHHHH-----
Q 001947 90 ASLEKYSETAVAPRKSILKDEV-EWLN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--D--FIYAEY----- 156 (992)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~-~~L~--~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~~--~--~~~~~~----- 156 (992)
..+..+... ....+++.. ++++ ..+||+||+|. .+++..+|+.+|||.+.+..... . ..+..+
T Consensus 85 ~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c1x_A 85 EDIELFTRA----APESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKI 160 (456)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHH----hHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhcc
Confidence 112222111 111122222 2232 36899999997 56888899999999998843321 1 000000
Q ss_pred ---------------Hhhhcc-------------c----hHHHHHHHHhhccccceeeecCCCCC--------CCCCCce
Q 001947 157 ---------------VMAAGH-------------H----HRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRDV 196 (992)
Q Consensus 157 ---------------~~~~~~-------------~----~~~i~~~l~~~y~~~d~ll~~~~~~~--------~p~~~~v 196 (992)
++.... . ...+...+......++.++..++... .+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~~ 240 (456)
T 2c1x_A 161 GVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240 (456)
T ss_dssp CSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCE
T ss_pred CCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCCE
Confidence 000000 0 00111111122233343332222111 1123568
Q ss_pred eecCcccccC-CC---ChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEE-EeCCCCCC-C-----
Q 001947 197 IDVPLVVRRL-HK---SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDSQ-L----- 260 (992)
Q Consensus 197 ~~vp~~~~~~-~~---~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~-~----~ll~~l~~~~~~~V-v~G~~~~~-l----- 260 (992)
..+||+.... .. ...++.++++..+++++|||++||.+.. . +++..+...++.++ ++|..... +
T Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~ 320 (456)
T 2c1x_A 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFL 320 (456)
T ss_dssp EECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHH
T ss_pred EEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHH
Confidence 8888865421 11 1123667777667889999999998863 2 23334433455444 45654211 2
Q ss_pred ---CCCeEEcCCCCCHHHHHh--hcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCC
Q 001947 261 ---PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDL 334 (992)
Q Consensus 261 ---~~nv~v~~f~~~~p~lL~--aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~-G~Gi~v~~~~~ 334 (992)
++|+.+++|.+. .++|+ ++|+||||||+||++|++++|+|+|++| .+.||+.||+++++. |+|+.+...++
T Consensus 321 ~~~~~~~~v~~w~pq-~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P--~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 321 EKTRGYGMVVPWAPQ-AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP--FFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp HHHTTTEEEESCCCH-HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred hhcCCceEEecCCCH-HHHhcCCcCCEEEecCCcchHHHHHHhCceEEecC--ChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 468888876654 37888 7899999999999999999999999999 578999999999999 99999988888
Q ss_pred ChhhHHHHHHHHhhCC
Q 001947 335 LTGHWKPYLERAISLK 350 (992)
Q Consensus 335 ~~~~l~~al~~ll~~~ 350 (992)
+.+.+.++|+++++++
T Consensus 398 ~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQE 413 (456)
T ss_dssp CHHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHCCC
Confidence 9999999999999754
No 38
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.89 E-value=4.1e-22 Score=235.71 Aligned_cols=330 Identities=10% Similarity=0.061 Sum_probs=193.7
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCC-cccccccC------CCceeeeeecccCCcccccccc
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQ------SPRLFIRKVLLDCGAVQADALT 85 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~-~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~ 85 (992)
|++++|++ ++.++.||++|.+.||++|.++||+|+|++.... ........ .+.+.+.... .++..... .
T Consensus 6 ~~~~~vl~-~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~lp~~~~-~ 81 (482)
T 2pq6_A 6 NRKPHVVM-IPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP--DGLTPMEG-D 81 (482)
T ss_dssp --CCEEEE-ECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC--CCCC------
T ss_pred CCCCEEEE-ecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC--CCCCCccc-c
Confidence 44456654 4688999999999999999999999999976421 11111100 0234443321 12211000 0
Q ss_pred cChHHHHHHHHHHhhccHHHhHHHHHHHHH----cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHH---H-
Q 001947 86 VDRLASLEKYSETAVAPRKSILKDEVEWLN----SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY---A- 154 (992)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~----~~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~~~--~~~---~- 154 (992)
.+....+..+...+.......++++.+.++ ..+||+||+|. .+|+..+|+.+|||.+.+...... ..+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (482)
T 2pq6_A 82 GDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRS 161 (482)
T ss_dssp ----CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHH
T ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHH
Confidence 000001112222221223334455555454 25899999997 678888999999999988443211 000 0
Q ss_pred ----HHHhhh----------ccc-----------h-------------HHHHH---HHHhhccccceeeecCCC-CC---
Q 001947 155 ----EYVMAA----------GHH-----------H-------------RSIVW---QIAEDYSHCEFLIRLPGY-CP--- 189 (992)
Q Consensus 155 ----~~~~~~----------~~~-----------~-------------~~i~~---~l~~~y~~~d~ll~~~~~-~~--- 189 (992)
.|.+.. ... . ....+ ...+....++.++...+. ..
T Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~ 241 (482)
T 2pq6_A 162 FVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241 (482)
T ss_dssp HHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHH
T ss_pred HHhcCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHH
Confidence 011100 000 0 00000 011112223333321111 10
Q ss_pred ----CCCCCceeecCccccc--CC-----------C---ChHHHHHHhCCCCCCcEEEEEcCCCCCh-----hhHHHhhC
Q 001947 190 ----MPAFRDVIDVPLVVRR--LH-----------K---SRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYL 244 (992)
Q Consensus 190 ----~p~~~~v~~vp~~~~~--~~-----------~---~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~-----~~ll~~l~ 244 (992)
.+.+++++.|||+... .. . ...++.+|++-.+++++|||++||.+.. .+++..|.
T Consensus 242 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~ 321 (482)
T 2pq6_A 242 INALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLA 321 (482)
T ss_dssp HHHHHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHH
Confidence 1233568889886432 11 0 1124567777666789999999998752 13333454
Q ss_pred CCCcEEEE-eCCCC--------CC-----CCCCeEEcCCCCCHHHHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCC
Q 001947 245 PSGWKCLV-CGASD--------SQ-----LPPNFIKLPKDAYTPDFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRD 308 (992)
Q Consensus 245 ~~~~~~Vv-~G~~~--------~~-----l~~nv~v~~f~~~~p~lL~a--aDlvIt~~G~~Tv~Eal~~GvP~V~iP~~ 308 (992)
..++.+++ +|... ++ +++|+.+++|++.+ ++|++ +++||||||+||++|++++|||+|++|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~-~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P-- 398 (482)
T 2pq6_A 322 NCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD-KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP-- 398 (482)
T ss_dssp HTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--
T ss_pred hcCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHH-HHhcCCCCCEEEecCCcchHHHHHHcCCCEEecC--
Confidence 45666654 45321 11 25789998876543 68855 667999999999999999999999999
Q ss_pred CCCChHHHHHHHH-HcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 309 YFNEEPFLRNMLE-FYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 309 ~~~EQ~~NA~~le-~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
.+.||+.||++++ +.|+|+.+. .+++++.+.++|+++++++
T Consensus 399 ~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 399 FFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAGD 440 (482)
T ss_dssp CSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHHHHHHHTSH
T ss_pred cccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHHHHHHHHcCC
Confidence 4689999999997 799999998 6789999999999999754
No 39
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.89 E-value=1.9e-22 Score=225.88 Aligned_cols=304 Identities=13% Similarity=0.073 Sum_probs=196.3
Q ss_pred EEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001947 497 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 576 (992)
Q Consensus 497 ~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 576 (992)
..++||+||+|+|+|.||+++.+||+.....+++. .+..+-++ +. +. ++.. ..
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v---------------------~~-~~--~~~~--~~ 62 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKV---------------------TF-DP--DFTE--DC 62 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEE---------------------EE-ET--TCSS--CE
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEE---------------------EE-cC--CCCc--cE
Confidence 47899999999999999999999999888777765 22322111 10 10 0000 11
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001947 577 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 656 (992)
Q Consensus 577 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 656 (992)
+.++ . .....+|.|+++.++..+.+.++.+ .|++|.+.++||.++|||||||..+|++
T Consensus 63 ~~i~--g------------------~~~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~~~GLgSSaa~~~a~~ 120 (332)
T 3qt5_A 63 LILN--G------------------NEVNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPTAAGLASSASAYAALA 120 (332)
T ss_dssp EEET--T------------------EECCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCGGGTCCCHHHHHHHHH
T ss_pred EEEC--C------------------ccCCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHH
Confidence 2221 1 0012358999999999887777765 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEee-cCcc--ceeeec---CCCCeEEEEEe
Q 001947 657 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVC-QPAE--LLGVVE---IPSHIRFWGID 730 (992)
Q Consensus 657 ~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~-~~~~--~~~~v~---~p~~~~~vl~d 730 (992)
.|++.+++.+++++||.++|.++|. |-.++++||. +.... .... +..+++ .+++++++++.
T Consensus 121 ~a~~~l~~~~l~~~el~~la~~~~g----------~~~~~~~GG~---~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~v 187 (332)
T 3qt5_A 121 AACNEALSLNLSDTDLSRLARRGSG----------SASRSIFGGF---AEWEKGHDDLTSYAHGINSNGWEKDLSMIFVV 187 (332)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHCG----------GGGGGGSCSE---EEEECCSSTTTCEEEEECCTTGGGGEEEEEEC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcC----------CchhhhcCCe---EEEecCCCCccceeeecccccCCCCcEEEEEE
Confidence 9999999999999999999998753 4467889995 33322 1111 113343 23578877764
Q ss_pred CCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhh
Q 001947 731 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 810 (992)
Q Consensus 731 sgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 810 (992)
.....++..+ | ..+ . .
T Consensus 188 p~~~~~~~ss-----~-------~~~----------------------------~--------------------~---- 203 (332)
T 3qt5_A 188 INNQSKKVSS-----R-------SGM----------------------------S--------------------L---- 203 (332)
T ss_dssp CCCCCCC--C-----H-------HHH----------------------------H--------------------H----
T ss_pred EcCCCCCCch-----H-------HHH----------------------------H--------------------H----
Confidence 3322111110 0 000 0 0
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchhhh-HHHHHHHHHhccCChhHHHHHHHHHHH----hhh
Q 001947 811 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENF-RVKAFKALLTAAASDDQLTSLGELLYQ----CHY 885 (992)
Q Consensus 811 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~-Rv~~~~~~l~~~~~~~d~~~lG~lm~~----sH~ 885 (992)
.++... ...+.+.+.. |+..++.+|.++ |++.||++|.+ -|+
T Consensus 204 ~~~~s~-----------------------------~~~~~v~~~~~~~~~l~~Al~~~----D~~~l~~~~~~d~~~lh~ 250 (332)
T 3qt5_A 204 TRDTSR-----------------------------FYQYWLDHVDEDLNEAKEAVKNQ----DFQRLGEVIEANGLRMHA 250 (332)
T ss_dssp HHHHCT-----------------------------THHHHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHH
T ss_pred hhhcCh-----------------------------hHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 000000 0111222233 788899999986 99999999973 477
Q ss_pred hhhhc--C--CCCchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCC
Q 001947 886 SYSAC--G--LGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGY 961 (992)
Q Consensus 886 slr~~--~--vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~ 961 (992)
.+++- . ...|+++++++.++++.+ .|++|+.++|+| +||++|.+++ +++++.+++++.| .
T Consensus 251 ~~~~~~p~~~yl~p~~~~i~~~~~~~~~--------~Ga~~a~~SGaG--Ptv~~l~~~~-~a~~v~~~l~~~~-----~ 314 (332)
T 3qt5_A 251 TNLGAQPPFTYLVQESYDAMAIVEQCRK--------ANLPCYFTMDAG--PNVKVLVEKK-NKQAVMEQFLKVF-----D 314 (332)
T ss_dssp HHHTSSSCCCSCCHHHHHHHHHHHHHHH--------TTCCEEEECCSS--SCEEEEEEHH-HHHHHHHHHHTTS-----C
T ss_pred HhcccCCCceeeChHHHHHHHHHHHHHh--------CCCcEEEEeCCC--CcEEEEECHH-HHHHHHHHHHHhC-----C
Confidence 77762 1 147999999999864311 689999999776 9999887642 2344444444333 2
Q ss_pred CCeEEee--cCCCCce
Q 001947 962 LPLIIEG--SSPGAGK 975 (992)
Q Consensus 962 ~~~~~~~--~~~Ga~~ 975 (992)
..+++++ .++|+..
T Consensus 315 ~~~~~v~~~~g~G~~~ 330 (332)
T 3qt5_A 315 ESKIIASDIISSGVEI 330 (332)
T ss_dssp GGGEEEEEBCSSCCEE
T ss_pred CceEEEeccccCCcEe
Confidence 3467665 4677643
No 40
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.87 E-value=7.1e-21 Score=223.73 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=191.9
Q ss_pred ccEEEEEeccCCCcccHHHHHHHHHHHHHC--CCcEEEEeCCCCc--ccccccC-----CCceeeeeecccCCccccccc
Q 001947 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF--VFTSEIQ-----SPRLFIRKVLLDCGAVQADAL 84 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--GheV~~~~~~~~~--~~~~~i~-----~~~~~~~~~~~~~g~~~~~~~ 84 (992)
++++|++ +++++.||++|.++||+.|..+ ||+|+|++..... .+...+. .+.+.+.... .+.......
T Consensus 8 ~~~~vv~-~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~~ 84 (463)
T 2acv_A 8 KNSELIF-IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLP--EVEPPPQEL 84 (463)
T ss_dssp HCEEEEE-ECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECC--CCCCCCGGG
T ss_pred CCCEEEE-EcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECC--CCCCCcccc
Confidence 3456654 5778899999999999999999 9999999765321 1111110 1234444421 111100000
Q ss_pred ccChHHHHHHHHHHhhccHHHhHHHHHHHHHc---CCCcEEEECC-CchHHHHHHHcCCcEEEEecCch-h-HHHHHH--
Q 001947 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS---IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYAEY-- 156 (992)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---~kPDlVVsD~-~~~a~~aA~~~gIP~v~is~~~~-~-~~~~~~-- 156 (992)
..+. ... +... .........++|++ .+||+||+|. .+++..+|+.+|||.+.+..... . ..+..+
T Consensus 85 ~~~~-~~~--~~~~----~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (463)
T 2acv_A 85 LKSP-EFY--ILTF----LESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN 157 (463)
T ss_dssp GGSH-HHH--HHHH----HHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGG
T ss_pred cCCc-cHH--HHHH----HHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHh
Confidence 0111 111 1111 11222334555655 7899999997 67788899999999887632221 1 001000
Q ss_pred ------------------Hhhh-cc----chH-HH------HHH---HHhhccccceeeecCCCC------------CCC
Q 001947 157 ------------------VMAA-GH----HHR-SI------VWQ---IAEDYSHCEFLIRLPGYC------------PMP 191 (992)
Q Consensus 157 ------------------~~~~-~~----~~~-~i------~~~---l~~~y~~~d~ll~~~~~~------------~~p 191 (992)
++.. .. ... .+ ... ....+..++.++..++.. ..|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p 237 (463)
T 2acv_A 158 RQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237 (463)
T ss_dssp SCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTT
T ss_pred hcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhcccc
Confidence 0000 00 000 00 000 011122222222111110 001
Q ss_pred CCCceeecCcccccC--C------CChHHHHHHhCCCCCCcEEEEEcCCCC-Ch-h----hHHHhhCCCCcEEE-EeCCC
Q 001947 192 AFRDVIDVPLVVRRL--H------KSRKEVRKELGIEDDVKLLILNFGGQP-AG-W----KLKEEYLPSGWKCL-VCGAS 256 (992)
Q Consensus 192 ~~~~v~~vp~~~~~~--~------~~r~e~r~~l~~~~d~~~Vlvs~Gg~~-~~-~----~ll~~l~~~~~~~V-v~G~~ 256 (992)
.+++..+||+.... . ..+.++.+|++..+++++|||++||.+ .. . +++..|...++.++ ++|.+
T Consensus 238 -~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 316 (463)
T 2acv_A 238 -IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE 316 (463)
T ss_dssp -SCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred -CCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34678888875432 1 113467788877678899999999998 42 1 23334444456555 45653
Q ss_pred ---CCC-----C--CCCeEEcCCCCCHHHHHh--hcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHc
Q 001947 257 ---DSQ-----L--PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFY 323 (992)
Q Consensus 257 ---~~~-----l--~~nv~v~~f~~~~p~lL~--aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~l-e~~ 323 (992)
.++ . ++|+.+++|.+.+ ++|+ ++|+||||||+||++|++++|+|+|++| .+.||+.||+++ ++.
T Consensus 317 ~~~l~~~~~~~~~~~~~~~v~~w~pq~-~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P--~~~dQ~~Na~~lv~~~ 393 (463)
T 2acv_A 317 KKVFPEGFLEWMELEGKGMICGWAPQV-EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP--IYAEQQLNAFRLVKEW 393 (463)
T ss_dssp GGGSCTTHHHHHHHHCSEEEESSCCHH-HHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECC--CSTTHHHHHHHHHHTS
T ss_pred cccCChhHHHhhccCCCEEEEccCCHH-HHhCCCccCeEEecCCchhHHHHHHcCCCeeecc--chhhhHHHHHHHHHHc
Confidence 111 2 5678888766543 6775 6999999999999999999999999999 578999999995 899
Q ss_pred CcEEEE-e---cC--CCChhhHHHHHHHHhh
Q 001947 324 QGGVEM-I---RR--DLLTGHWKPYLERAIS 348 (992)
Q Consensus 324 G~Gi~v-~---~~--~~~~~~l~~al~~ll~ 348 (992)
|+|+.+ . .. .++.+.+.++|+++++
T Consensus 394 g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp CCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred CeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 999999 3 34 6788999999999995
No 41
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.87 E-value=1.9e-22 Score=221.33 Aligned_cols=168 Identities=14% Similarity=0.146 Sum_probs=131.2
Q ss_pred EEEcCccccc----cccccc-cCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001947 498 VARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 572 (992)
Q Consensus 498 ~~~APGRv~L----~GeH~d-y~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 572 (992)
.++||||||| +|+|+| |+++.++++||+++.++.+++++++++ ++.+.
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i---------------------~i~~~------ 56 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDI---------------------RLLTP------ 56 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCE---------------------EECSC------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcE---------------------EEEeC------
Confidence 4689999999 899999 999999999999999999998765432 22100
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHh------CCCCCCCEEEEEEeCCCCCCCCc
Q 001947 573 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTEL------GVRFEDSISMLVSSAVPEGKGVS 646 (992)
Q Consensus 573 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~------g~~~~~g~~i~i~s~iP~g~GLg 646 (992)
. ..+ + ...|+++.++..+.+.. |.. .|++|.+.++||.++|||
T Consensus 57 ----~----~~~-------------------~--~~~nlv~~a~~~~~~~~~~~~~~g~~--~g~~i~i~~~IP~g~GLG 105 (283)
T 2ww4_A 57 ----V----EGV-------------------E--HEDNLIVRAARLLMKTAADSGRLPTG--SGANISIDKRLPMGGGLG 105 (283)
T ss_dssp ----B----TTB-------------------C--GGGSHHHHHHHHHHHHHHHTTCSCTT--CEEEEEEECCCC-CTTSC
T ss_pred ----C----CCC-------------------C--CcccHHHHHHHHHHHHhhhhcccCCC--CceEEEEEeCCCCCCCcc
Confidence 0 011 1 12689999988877666 753 699999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEE
Q 001947 647 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF 726 (992)
Q Consensus 647 SSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~ 726 (992)
||||.++|++.|++.+++.++++++++++|.++|. |..++++||. ++....... .+++++| ++.+
T Consensus 106 sSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~----------dv~~~~~gg~---~~~~g~g~~-~~~l~~~-~~~~ 170 (283)
T 2ww4_A 106 GGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA----------DVPVFVRGHA---AFAEGVGEI-LTPVDPP-EKWY 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT----------THHHHHHTBC---EEEETTTTE-EEECCCC-CCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHhhcCCe---EEEEecCcc-ceEcCCC-CcEE
Confidence 99999999999999999999999999999998873 7788999995 333333322 2566655 7889
Q ss_pred EEEeCCCccccC
Q 001947 727 WGIDSGIRHSVG 738 (992)
Q Consensus 727 vl~dsgi~~~~~ 738 (992)
++++++++.+|.
T Consensus 171 vl~~p~~~~sT~ 182 (283)
T 2ww4_A 171 LVAHPGVSIPTP 182 (283)
T ss_dssp EEECCSCCCCHH
T ss_pred EEEeCCCCCchH
Confidence 999988866653
No 42
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.86 E-value=1.5e-21 Score=213.66 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=124.1
Q ss_pred EEEcCccccc----cccccc-cCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001947 498 VARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 572 (992)
Q Consensus 498 ~~~APGRv~L----~GeH~d-y~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 572 (992)
.+ ||||||| .|+|.| |++..++.++|+++.++.+.+ + ++++ ..
T Consensus 3 ~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~--~-~~~i---------------------~~------- 50 (275)
T 1uek_A 3 RL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP--V-SSGL---------------------HF------- 50 (275)
T ss_dssp EE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE--E-SSCE---------------------EE-------
T ss_pred ee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE--C-cEEE---------------------EE-------
Confidence 45 9999999 699999 999999999999999999987 2 3211 10
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHH
Q 001947 573 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVE 652 (992)
Q Consensus 573 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 652 (992)
+- ++ + ..|+++.++..+++..|.. .|++|.+.++||.++|||||||.+
T Consensus 51 -------~~-~~-------------------~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGSSsa~a 98 (275)
T 1uek_A 51 -------QG-PY-------------------G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPEGAGLGGGSSDA 98 (275)
T ss_dssp -------ES-TT-------------------G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCSSSSSCHHHHHH
T ss_pred -------cC-CC-------------------C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCCcCcccHHHHHH
Confidence 00 10 1 2688888888877776753 699999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccceeeecCCCCeEEEEEeCC
Q 001947 653 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSG 732 (992)
Q Consensus 653 va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~~p~~~~~vl~dsg 732 (992)
+|++.|++++++.++ +++++|.++|. |..++++||. ++...+... .++++ ++++++++++++
T Consensus 99 ~a~l~al~~l~~~~l---~l~~la~~~g~----------dv~~~~~Gg~---~~~~g~g~~-~~~l~-~~~~~~vl~~p~ 160 (275)
T 1uek_A 99 AQVLLALQALYPAEV---DLFALARTLGA----------DVPFFLLGRG---AEARGVGER-LKPLA-LPPVPAVVFFPG 160 (275)
T ss_dssp HHHHHHHHHHSCSCC---CHHHHHHHHCT----------THHHHHHCSE---EEEETTTTE-EEEEC-CCCEEEEEEECC
T ss_pred HHHHHHHHHHcCCCh---HHHHHHHHhCC----------ChHHHhcCCe---EEEEccCce-eEEcc-CCCcEEEEEeCC
Confidence 999999999999998 89999998862 8889999994 344333323 35666 568999999988
Q ss_pred Ccccc
Q 001947 733 IRHSV 737 (992)
Q Consensus 733 i~~~~ 737 (992)
++.+|
T Consensus 161 ~~~sT 165 (275)
T 1uek_A 161 LRVPT 165 (275)
T ss_dssp CCCCH
T ss_pred CCCch
Confidence 76654
No 43
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.85 E-value=4.1e-20 Score=204.11 Aligned_cols=282 Identities=13% Similarity=0.149 Sum_probs=184.9
Q ss_pred EEEEcCccccccccccccCCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001947 497 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 576 (992)
Q Consensus 497 ~~~~APGRv~L~GeH~dy~gg~vl~~aI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 576 (992)
+.+++|++.--+|- |..+|-+||+.+.++.+.+..+ + +.+....
T Consensus 3 ~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~~-~---------------------~~i~~~~--------- 46 (298)
T 3hul_A 3 LRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEAD-S---------------------WYIEHNI--------- 46 (298)
T ss_dssp EEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEECS-S---------------------CEEECCC---------
T ss_pred EEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcCC-c---------------------eEEEecC---------
Confidence 57899999887887 7778889999998888875322 1 1221100
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCchHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001947 577 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 656 (992)
Q Consensus 577 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~w~nyv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 656 (992)
-..++ .+ =.|.++.++..+++ .. .|++|.|.++||.++|||||||.++|++
T Consensus 47 ----~~~~p----------------~~----~~nlv~~a~~~~~~----~~-~g~~i~i~~~iP~~~GLGsssa~~~a~~ 97 (298)
T 3hul_A 47 ----GGGIP----------------HD----ETNVIIETALNLAP----NL-TPHHLVMTCDIPPARGLGSSSAAVVAGI 97 (298)
T ss_dssp ----CTTCC----------------SS----TTSHHHHHHHHHCT----TC-CCEEEEEEECSCTTSSSSHHHHHHHHHH
T ss_pred ----cccCC----------------CC----CCcHHHHHHHHHhc----cC-CceEEEEecCCCCCCCccHHHHHHHHHH
Confidence 00110 01 13556555554432 22 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEeecCccc-eeeecCCCCeEEEEEeCCCcc
Q 001947 657 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAEL-LGVVEIPSHIRFWGIDSGIRH 735 (992)
Q Consensus 657 ~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~~v~~p~~~~~vl~dsgi~~ 735 (992)
.|++.+++.++++++|+++|..+|.+ | .|-.++++||. .+........ ..++++| ++.+++++++...
T Consensus 98 ~al~~~~~~~l~~~el~~la~~~eg~----~---ddv~~~~~GG~---~~~~g~ge~~~~~~~~~p-~~~~vlv~p~~~~ 166 (298)
T 3hul_A 98 ELANTLAELNLSKEEKVRIAAEIEGH----P---DNVAPAVLGNW---VVGAKLDGEDFYVRHLFP-DCALIAFIPKAEL 166 (298)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHSC----S---TTHHHHHHCSE---EEEEEETTEEEEEEECCC--CEEEEEECCCCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcCC----c---ccCcccccCCE---EEEEeCCCcEEEEEcCCC-CeEEEEEECCCCC
Confidence 99999999999999999999999943 2 13346789995 2222222221 1245555 5899999887765
Q ss_pred ccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCcc
Q 001947 736 SVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPES 815 (992)
Q Consensus 736 ~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~ 815 (992)
+|.. .| +.+|+.
T Consensus 167 sT~~-a~-------------------------------------------------------------------~~l~~~ 178 (298)
T 3hul_A 167 LTSE-SR-------------------------------------------------------------------GVLPDT 178 (298)
T ss_dssp C----------------------------------------------------------------------------CCE
T ss_pred CcHH-HH-------------------------------------------------------------------HHHhhh
Confidence 5432 01 011110
Q ss_pred chhhhhhhhcCCCCCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHH--hhhhhhhcCCC
Q 001947 816 IVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQ--CHYSYSACGLG 893 (992)
Q Consensus 816 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~--sH~slr~~~vs 893 (992)
+. ....+.+..|+..+..+|.++ |++.||++|+. .|+.++.. .
T Consensus 179 ~~-----------------------------~~~~~~~~~~~~~~~~al~~~----d~~~l~~~l~nd~~~e~~~~~--~ 223 (298)
T 3hul_A 179 LP-----------------------------FKEAVQASSIANVMIAAILRN----DMTLAGEMMERDLWHEKYRSQ--L 223 (298)
T ss_dssp EE-----------------------------HHHHHHHHHHHHHHHHHHTTT----CHHHHHHHHTCCCC-----CT--T
T ss_pred cc-----------------------------HHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHhhhHHHHHHHHh--h
Confidence 00 011233445677888889886 99999999973 48988875 5
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCCcccceeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCeEEee--cCC
Q 001947 894 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSP 971 (992)
Q Consensus 894 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~ 971 (992)
+|+++++++.+++ .|++|++|||+| +|++++.+ ..+ .+++.+.++ +.+....++.+ ...
T Consensus 224 ~p~l~~l~~~~~~-----------~Ga~ga~~SGsG--ptv~al~~-~~~----a~~v~~~l~-~~~~~~~~~~~~~~~~ 284 (298)
T 3hul_A 224 VPHLAQIRDVAKN-----------QGAYAACLSGAG--PTVLVFAP-RNL----ANKLQTSLQ-TLEIDADVLLLDVEGS 284 (298)
T ss_dssp GGGHHHHHHHHHT-----------TTCCEEEECTTS--SCEEEEEC-GGG----HHHHHHHHH-TTCCSSEEEEEEBCCC
T ss_pred CchHHHHHHHHHH-----------CCCEEEEEeccc--hheEEEEC-HHH----HHHHHHHHH-hcCCCcEEEEcccCCC
Confidence 8999999999886 689999999998 78887776 222 345555554 44555666665 678
Q ss_pred CCcee
Q 001947 972 GAGKF 976 (992)
Q Consensus 972 Ga~~~ 976 (992)
|+++.
T Consensus 285 Ga~v~ 289 (298)
T 3hul_A 285 GAEVF 289 (298)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 87664
No 44
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.82 E-value=6.3e-19 Score=199.76 Aligned_cols=320 Identities=16% Similarity=0.038 Sum_probs=197.5
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccccccccChHHHHHHH
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (992)
|+|+++..+.| ||..++..|+++|.++||+|++++...... ...+...++.+...... ++. .......+...
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~~~g~~~~~~~~~-~~~-----~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADLVPKHGIEIDFIRIS-GLR-----GKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHHGGGGTCEEEECCCC-CCT-----TCCHHHHHTCH
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCCEEEEEecCCcch-hhhccccCCceEEecCC-ccC-----cCccHHHHHHH
Confidence 67877766555 999999999999999999999998754211 11111111222221000 000 00001111000
Q ss_pred HHHhhccHHHhHHHHHHHHHcCCCcEEEECCCc---hHHHHHHHcCCcEEEEecCchhHHHHHHHhhhccchHHHHHHHH
Q 001947 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (992)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~a~~aA~~~gIP~v~is~~~~~~~~~~~~~~~~~~~~~i~~~l~ 172 (992)
.. ....+....+++++++||+|+++... .+..+++..++|++....-.+..... ..
T Consensus 79 ~~-----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~---------------~~- 137 (364)
T 1f0k_A 79 LR-----IFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTN---------------KW- 137 (364)
T ss_dssp HH-----HHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHHH---------------HH-
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCCcHHH---------------HH-
Confidence 11 11123455678889999999998632 34567788899998653322110000 11
Q ss_pred hhccccceeeecCCCCCCCCCCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-Hh---hCCC
Q 001947 173 EDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---YLPS 246 (992)
Q Consensus 173 ~~y~~~d~ll~~~~~~~~p~~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~--~~ll-~~---l~~~ 246 (992)
.+..++.++..... ..+ ...+.+.|+........ ..++.+++++++++|++++|+.... ..++ +. +..
T Consensus 138 -~~~~~d~v~~~~~~-~~~-~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~- 211 (364)
T 1f0k_A 138 -LAKIATKVMQAFPG-AFP-NAEVVGNPVRTDVLALP--LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD- 211 (364)
T ss_dssp -HTTTCSEEEESSTT-SSS-SCEECCCCCCHHHHTSC--CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG-
T ss_pred -HHHhCCEEEecChh-hcC-CceEeCCccchhhcccc--hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC-
Confidence 12233444432111 111 11233333322111111 1245667777778888888887653 2222 32 322
Q ss_pred CcE-EEEeCCCCCC--------CC-CCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC-CChHH
Q 001947 247 GWK-CLVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF-NEEPF 315 (992)
Q Consensus 247 ~~~-~Vv~G~~~~~--------l~-~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~-~EQ~~ 315 (992)
++. ++++|....+ ++ +|+++.+++++++++|+.||++|+++|.+++.||+++|+|+|+.+.++. .+|..
T Consensus 212 ~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 212 SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred CcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 566 4567876521 22 5899999998899999999999999999999999999999999987654 57899
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHHHHc
Q 001947 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY---------EGGINGGEVAAHILQETAI 372 (992)
Q Consensus 316 NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~---------~~~~~G~~~aA~~I~~~~~ 372 (992)
|++.+.+.|.|..++..+++++.|.++|.++ ++..+ .....+.+++++.+++...
T Consensus 292 ~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 292 NALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVAR 355 (364)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 9999999999999998887778899998877 33211 1356788888888888764
No 45
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.81 E-value=1.8e-18 Score=188.69 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=150.2
Q ss_pred cCCCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccccccccChHHHHHHHHHHhhcc
Q 001947 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP 102 (992)
Q Consensus 23 ~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (992)
...|+||++||++||++|+ +|.|+|........+.+ ++.+.. .. ..+
T Consensus 11 ~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~---g~~v~~-------l~----~~d--------------- 57 (282)
T 3hbm_A 11 SQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEI---PYPVYE-------LS----SES--------------- 57 (282)
T ss_dssp TTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGC---CSCEEE-------CS----SSC---------------
T ss_pred CCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHC---CCeEEE-------cC----ccC---------------
Confidence 4578999999999999998 79999875322111111 111111 00 001
Q ss_pred HHHhHHHHHHHHHcCCCcEEEECCCchHHHHH---HH-cCCcEEEEecCchhHHHHHHHhhhccchHHHHHHHHhhcccc
Q 001947 103 RKSILKDEVEWLNSIKADLVVSDVVPVACRAA---AD-AGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (992)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~~~~a~~aA---~~-~gIP~v~is~~~~~~~~~~~~~~~~~~~~~i~~~l~~~y~~~ 178 (992)
..+..+++++.+||+||.|++.....+- +. .++++++++|+.- .+ .+
T Consensus 58 ----~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~~-----~~--------------------~~ 108 (282)
T 3hbm_A 58 ----IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDEIK-----PH--------------------HC 108 (282)
T ss_dssp ----HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECSSCC-----CC--------------------CC
T ss_pred ----HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEecCCC-----cc--------------------cC
Confidence 1223455677899999999855443332 22 4889999987641 00 12
Q ss_pred ceeeecCCCC-------CCCCCCceeecCcccccCCCChHHHHHHhC-CCCCCcEEEEEcCCCCCh---hhHHHhhCCCC
Q 001947 179 EFLIRLPGYC-------PMPAFRDVIDVPLVVRRLHKSRKEVRKELG-IEDDVKLLILNFGGQPAG---WKLKEEYLPSG 247 (992)
Q Consensus 179 d~ll~~~~~~-------~~p~~~~v~~vp~~~~~~~~~r~e~r~~l~-~~~d~~~Vlvs~Gg~~~~---~~ll~~l~~~~ 247 (992)
|.++...... ..|. ......|+... ..|++..+.-. ..+..+.|+|++||.+.. ..+++.+....
T Consensus 109 Dllin~~~~~~~~~Y~~~~p~-~~~~l~G~~Y~---~lR~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~~~ 184 (282)
T 3hbm_A 109 DILLNVNAYAKASDYEGLVPF-KCEVRCGFSYA---LIREEFYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTK 184 (282)
T ss_dssp SEEEECSTTCCGGGGTTTCC--CCEEEESGGGC---CCCHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSCTTS
T ss_pred CEEEeCCcccchhhccccCCC-CCeEeeCCccc---ccCHHHHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhhcCC
Confidence 2222111000 0010 00112233111 12334332211 123456899999987653 24555554433
Q ss_pred cEEEEeCCCCCC---------CCCCeEEcCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHH
Q 001947 248 WKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRN 318 (992)
Q Consensus 248 ~~~Vv~G~~~~~---------l~~nv~v~~f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~ 318 (992)
...|++|++.+. -.+|+++.+|+++|+++|+.||++||+|| +|++|++++|+|+|++|. ..+|..||+
T Consensus 185 ~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG-~T~~E~~~~g~P~i~ip~--~~~Q~~nA~ 261 (282)
T 3hbm_A 185 IISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICY--VKNQESTAT 261 (282)
T ss_dssp CEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESS-HHHHHHHHTTCCEEEECC--SGGGHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCc-HHHHHHHHcCCCEEEEeC--CCCHHHHHH
Confidence 455778887653 13589999999999999999999999888 899999999999999995 467899999
Q ss_pred HHHHcCcEEEEec
Q 001947 319 MLEFYQGGVEMIR 331 (992)
Q Consensus 319 ~le~~G~Gi~v~~ 331 (992)
.+++.|+++.+..
T Consensus 262 ~l~~~G~~~~~~~ 274 (282)
T 3hbm_A 262 WLAKKGYEVEYKY 274 (282)
T ss_dssp HHHHTTCEEECGG
T ss_pred HHHHCCCEEEcch
Confidence 9999999988864
No 46
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.75 E-value=3.3e-17 Score=188.90 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHhCC------CC----CCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 001947 609 AAYVAGTILVLMTELGV------RF----EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQK 678 (992)
Q Consensus 609 ~nyv~~~i~~~~~~~g~------~~----~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~ 678 (992)
.|+++.++..+.+..+. .. ..|++|.+.++||.++|||||||.++|++.|++.++|.+++++||+++|..
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~ 171 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARK 171 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 46777777765544443 00 268999999999999999999999999999999999999999999999988
Q ss_pred HhccccCCCCCccchhhhhccCcceEEEEeecC-----ccceeeecC---CCCeE--EEEEeCCCccccCCCCCcchhhh
Q 001947 679 VENHIVGAPCGVMDQMASACGEANKLLAMVCQP-----AELLGVVEI---PSHIR--FWGIDSGIRHSVGGADYGSVRAG 748 (992)
Q Consensus 679 ~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~-----~~~~~~v~~---p~~~~--~vl~dsgi~~~~~~~~y~~rr~~ 748 (992)
++. +...+++||. +..+... .....+++. .+++. +++.+++.++......|+.+
T Consensus 172 g~G----------s~~~sl~GG~---v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~--- 235 (416)
T 1fi4_A 172 GSG----------SACRSLFGGY---VAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT--- 235 (416)
T ss_dssp HHG----------GGGGGGSSSE---EEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH---
T ss_pred cCC----------chheEeeCCc---EEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH---
Confidence 753 3467899995 2332211 011123332 24666 44555443322111111000
Q ss_pred hhcchhhhhhhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCC
Q 001947 749 AFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDH 828 (992)
Q Consensus 749 ~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~ 828 (992)
+.. -|
T Consensus 236 -----------------------------------------------~~~-------------~~--------------- 240 (416)
T 1fi4_A 236 -----------------------------------------------VAT-------------SE--------------- 240 (416)
T ss_dssp -----------------------------------------------HHH-------------CS---------------
T ss_pred -----------------------------------------------hhc-------------CH---------------
Confidence 000 00
Q ss_pred CCCceecCCCccccccccccccchhhhHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhhh-----c---CCCCchHHHH
Q 001947 829 NDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-----C---GLGSDGTDRL 900 (992)
Q Consensus 829 ~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~sH~slr~-----~---~vs~~~lD~l 900 (992)
...+++.++. ..|+..++.+|.++ |++.||++|.++|..+.. + ..-.|.+..+
T Consensus 241 -------------~~~~~~~~i~--~~~~~~l~~AL~~g----D~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i 301 (416)
T 1fi4_A 241 -------------LFKERIEHVV--PKRFEVMRKAIVEK----DFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRI 301 (416)
T ss_dssp -------------HHHHHHHTHH--HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHH
T ss_pred -------------hHHHHHHHHH--HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHH
Confidence 0001222221 25788899999986 999999999776665543 1 2245677888
Q ss_pred HHHHHHHhhhccccCCCCC-cccceeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001947 901 VQLVQEIQHSKVSKSKDGT-LFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 956 (992)
Q Consensus 901 v~~a~~~~~~~~~~~~~~g-~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 956 (992)
++.+.++.. ..| +.++.|+|+| +|+++|.+++ +.+++.+++.+.|.
T Consensus 302 ~~~~~~~r~-------~~Ga~~~a~~SGaG--Ptv~al~~~~-~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 302 ISWCHTINQ-------FYGETIVAYTFDAG--PNAVLYYLAE-NESKLFAFIYKLFG 348 (416)
T ss_dssp HHHHHHHHH-------HHTSCCEEEEECSS--SCEEEEEEGG-GHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-------hcCCceEEEEecCC--CcEEEEECHH-HHHHHHHHHHHhcc
Confidence 877765311 015 6778899888 9998777543 23567788887775
No 47
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=155.64 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=111.0
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCC--hh----hHHHhhCCCCcEEEE-eCCCCCC-CCCCeEEcCCCCCHHHHH--hh
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQPA--GW----KLKEEYLPSGWKCLV-CGASDSQ-LPPNFIKLPKDAYTPDFM--AA 279 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~~--~~----~ll~~l~~~~~~~Vv-~G~~~~~-l~~nv~v~~f~~~~p~lL--~a 279 (992)
+.++.+++...+++++||+++|+.+. .. .+++++...++.+++ +|..... +++|+++.+|++. .++| ++
T Consensus 8 ~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 86 (170)
T 2o6l_A 8 PKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQ-NDLLGHPK 86 (170)
T ss_dssp CHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCTTCCTTEEEESSCCH-HHHHTSTT
T ss_pred CHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcccCCCcEEEecCCCH-HHHhcCCC
Confidence 45777777655677899999999863 22 344455444566654 4443333 7889999998765 5788 89
Q ss_pred cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 280 aDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
||+||+|+|++|++|++++|+|+|++|. ..||..|++++++.|+|+.++.++++++.|.++|.++++++
T Consensus 87 ad~~I~~~G~~t~~Ea~~~G~P~i~~p~--~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 87 TRAFITHGGANGIYEAIYHGIPMVGIPL--FADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp EEEEEECCCHHHHHHHHHHTCCEEECCC--STTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred cCEEEEcCCccHHHHHHHcCCCEEeccc--hhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 9999999999999999999999999995 57999999999999999999988888899999999999754
No 48
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.51 E-value=5.6e-13 Score=147.13 Aligned_cols=216 Identities=12% Similarity=0.043 Sum_probs=138.5
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHhccccCCCC
Q 001947 614 GTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM----SAIAAAHGLNI-HPRDLALLCQKVENHIVGAPC 688 (992)
Q Consensus 614 ~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~----~al~~~~~~~l-~~~el~~la~~~E~~~~G~~~ 688 (992)
..+..++++++.+ .|++|.+.++||.++|||||||..||++ .|+++++|+++ +++||.++|..++.
T Consensus 78 ~~i~~~l~~~~~~--~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsG------- 148 (323)
T 3lto_A 78 DHLVRLKEYFGYV--GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSG------- 148 (323)
T ss_dssp HHHHHHHHHHTCC--CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCG-------
T ss_pred HHHHHHHHHhCCC--CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC-------
Confidence 3455567777754 6999999999999999999999999999 99999999999 99999999976542
Q ss_pred CccchhhhhccCcceEEEEeecCccceeeec-CCCCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCcc
Q 001947 689 GVMDQMASACGEANKLLAMVCQPAELLGVVE-IPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQS 767 (992)
Q Consensus 689 G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~v~-~p~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~ 767 (992)
+-..|+|||. +.... . +...+. .++++.++++.-.-+.....+ .
T Consensus 149 ---saa~si~GG~---v~~~~-g--~~~~l~~~~~~l~~~v~vi~~~~~~vsT----~---------------------- 193 (323)
T 3lto_A 149 ---SSCRSFYAPW---ALWTG-D--KVSAIDLPYKDLLHQVIVISSQEKEIPS----R---------------------- 193 (323)
T ss_dssp ---GGGGGGSCSE---EEEET-T--EEEECCCSCCSCEEEEEECCCCTTCCCH----H----------------------
T ss_pred ---CcchhhhCCE---EEEec-C--cEEEccCCCCCCeEEEEEECCCCCCCCC----H----------------------
Confidence 3367999994 32321 1 113332 224666644421111100000 0
Q ss_pred CCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccc
Q 001947 768 LPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPV 847 (992)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 847 (992)
.+.+ .++.. + ..
T Consensus 194 --------------~~~~-------------------------~l~~~---------------~--------------~~ 205 (323)
T 3lto_A 194 --------------VAHK-------------------------LVKTS---------------P--------------FY 205 (323)
T ss_dssp --------------HHHH-------------------------HGGGS---------------T--------------TT
T ss_pred --------------HHHh-------------------------hcccC---------------h--------------hH
Confidence 0000 01000 0 01
Q ss_pred cccch-hhhHHHHHHHHHhccCChhHHHHHHHHHHH----hhhhhhh----cCCCCchHHHHHHHHHHHhhhccccCCCC
Q 001947 848 CHPIY-ENFRVKAFKALLTAAASDDQLTSLGELLYQ----CHYSYSA----CGLGSDGTDRLVQLVQEIQHSKVSKSKDG 918 (992)
Q Consensus 848 ~h~v~-E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~----sH~slr~----~~vs~~~lD~lv~~a~~~~~~~~~~~~~~ 918 (992)
.+.+. ...|+..++++|+++ |++.||++|.. -|..+++ .-.-.|++.++++.++++.+ ..
T Consensus 206 ~~~~~~~~~~~~~l~~AL~~g----D~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~-------~~ 274 (323)
T 3lto_A 206 ETRSERAEANLKLLLNAFENK----DWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWN-------EK 274 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHhHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHH-------hC
Confidence 12222 235788999999997 99999998653 4776665 12257888888888876421 14
Q ss_pred CcccceeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001947 919 TLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 955 (992)
Q Consensus 919 g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 955 (992)
|++|+.++||| ++++++.+.+. .+++.+.+.+.+
T Consensus 275 G~~~~~tsgAG--Pnv~~l~~~~~-~~~v~~~l~~~~ 308 (323)
T 3lto_A 275 GDGPVVTMDAG--PNVHLLYRSDQ-TDLARQFKSDHL 308 (323)
T ss_dssp SCCCEEECCSS--SCEEEEECGGG-HHHHHHHHHHHT
T ss_pred CCeEEEEECCC--CCeEEEEeccc-HHHHHHHHHHHh
Confidence 78999999999 77776665432 245666665444
No 49
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.49 E-value=7e-14 Score=146.46 Aligned_cols=151 Identities=16% Similarity=0.086 Sum_probs=104.6
Q ss_pred HhCCCCCCcEEEEEcCCCCChhhHH---------HhhCCCC-c-EEEEeCCCCC---C-----C---------C------
Q 001947 216 ELGIEDDVKLLILNFGGQPAGWKLK---------EEYLPSG-W-KCLVCGASDS---Q-----L---------P------ 261 (992)
Q Consensus 216 ~l~~~~d~~~Vlvs~Gg~~~~~~ll---------~~l~~~~-~-~~Vv~G~~~~---~-----l---------~------ 261 (992)
+++.++++|+|||++||+.....++ +.|...+ + .++.+|.... . . |
T Consensus 21 ~~~~~~~~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 100 (224)
T 2jzc_A 21 MLEGIIEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGC 100 (224)
T ss_dssp ---CCCCSCCEEEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCT
T ss_pred ccCCCCCCCEEEEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhccccccccccccccc
Confidence 3456678899999999985322222 3443444 4 4456787543 1 1 2
Q ss_pred -----------C--CeEEcCCCCCHHHHHh-hcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCc
Q 001947 262 -----------P--NFIKLPKDAYTPDFMA-ASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQG 325 (992)
Q Consensus 262 -----------~--nv~v~~f~~~~p~lL~-aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~--~~EQ~~NA~~le~~G~ 325 (992)
. ++.+++|+++|+++|+ +||+||||+|+||++|++++|+|+|++|.+. ..+|..||+++++.|+
T Consensus 101 ~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~ 180 (224)
T 2jzc_A 101 GDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGY 180 (224)
T ss_dssp TCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSC
T ss_pred cccccccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCC
Confidence 1 4568899999999999 9999999999999999999999999999763 3579999999999999
Q ss_pred EEEEecCCCChhhHHHHHHHHhhCCCCcc-CCCCHHHHHHHHHHHHH
Q 001947 326 GVEMIRRDLLTGHWKPYLERAISLKPCYE-GGINGGEVAAHILQETA 371 (992)
Q Consensus 326 Gi~v~~~~~~~~~l~~al~~ll~~~~~~~-~~~~G~~~aA~~I~~~~ 371 (992)
++.++ ++.|.++|.++......+. .+..+....+++|.+.+
T Consensus 181 ~~~~~-----~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (224)
T 2jzc_A 181 VWSCA-----PTETGLIAGLRASQTEKLKPFPVSHNPSFERLLVETI 222 (224)
T ss_dssp CCEEC-----SCTTTHHHHHHHHTTCCCCSCCCSSSCTHHHHHHHHC
T ss_pred EEEcC-----HHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHh
Confidence 98773 3556678888743232222 22223345566666543
No 50
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.44 E-value=1.8e-12 Score=147.83 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCC
Q 001947 609 AAYVAGTILVLMTELGVR-FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 687 (992)
Q Consensus 609 ~nyv~~~i~~~~~~~g~~-~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~ 687 (992)
.|.+..++..+.+..+.. ...|++|.++++||.++|||||||..+|++.|++.++|.+ ++|+++|...+.
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~G------ 145 (380)
T 2hke_A 75 TPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSG------ 145 (380)
T ss_dssp CHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCG------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCc------
Confidence 466666666554333430 0268999999999999999999999999999999999987 889999987642
Q ss_pred CCccchhhhhccCcceEEEEeecC-----ccceeeecCC---CCeEEEEE--eCCCccccCCCCCcchhhhhhcchhhhh
Q 001947 688 CGVMDQMASACGEANKLLAMVCQP-----AELLGVVEIP---SHIRFWGI--DSGIRHSVGGADYGSVRAGAFMGRKMIK 757 (992)
Q Consensus 688 ~G~~D~~~~~~Gg~~~~~~~~~~~-----~~~~~~v~~p---~~~~~vl~--dsgi~~~~~~~~y~~rr~~~~~~~~~i~ 757 (992)
|..+++|||. +...... .....+++.+ +++.++++ +++.+..... .
T Consensus 146 ----sva~s~~GG~---v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst-------~---------- 201 (380)
T 2hke_A 146 ----SACRSAFGGF---VIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSST-------K---------- 201 (380)
T ss_dssp ----GGGGGGSSSE---EEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHH-------H----------
T ss_pred ----ceeeehhCCe---EEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCH-------H----------
Confidence 4468999995 2332211 1112344332 35654443 3222111000 0
Q ss_pred hhccccCCccCCCCCCCCCCCcchhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCC
Q 001947 758 STASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDP 837 (992)
Q Consensus 758 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~ 837 (992)
..+ . .+|...
T Consensus 202 -------------------------------------~~r--------~----~~~~~~--------------------- 211 (380)
T 2hke_A 202 -------------------------------------GMQ--------Q----SLKTSP--------------------- 211 (380)
T ss_dssp -------------------------------------HHH--------H----HHHHCT---------------------
T ss_pred -------------------------------------HHH--------H----HHhcCh---------------------
Confidence 000 0 000000
Q ss_pred Cccccccccccccch--hhhHHHHHHHHHhccCChhHHHHHHHHHHH----hhhhhhh----cCCCCchHHHHHHHHHHH
Q 001947 838 KRTYFVRAPVCHPIY--ENFRVKAFKALLTAAASDDQLTSLGELLYQ----CHYSYSA----CGLGSDGTDRLVQLVQEI 907 (992)
Q Consensus 838 ~~~~~~~~r~~h~v~--E~~Rv~~~~~~l~~~~~~~d~~~lG~lm~~----sH~slr~----~~vs~~~lD~lv~~a~~~ 907 (992)
. ..+.+. ...|+..++.+|.++ |++.||++|.+ -|+.+++ +..-.|++.++++.++++
T Consensus 212 -----~---~~~~~~~~~~~~~~~l~~Al~~~----D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~ 279 (380)
T 2hke_A 212 -----L---MKKRISETVPERMKIASRAIKAR----DFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAY 279 (380)
T ss_dssp -----T---HHHHHHTHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHH
T ss_pred -----h---HHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHH
Confidence 0 011122 134678889999886 99999999954 4655444 133678888998887764
Q ss_pred hhhccccCCCC-C-cccceeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001947 908 QHSKVSKSKDG-T-LFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 956 (992)
Q Consensus 908 ~~~~~~~~~~~-g-~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 956 (992)
.. . | ++++.|+|+| .+++++.+++ +.+++.+.+++.|.
T Consensus 280 ~~--------~~Ga~~~a~~SGaG--Ptv~~l~~~~-~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 280 NA--------KKGRTALAYTFDAG--ANCFLFVLKE-DLPEAVAMLMEHFP 319 (380)
T ss_dssp HH--------HHTSCCEEEECCSS--SCEEEEEEGG-GHHHHHHHHHHHSC
T ss_pred HH--------hcCCcceEEEECCC--CcEEEEECHH-HHHHHHHHHHHhcc
Confidence 21 2 6 6778999776 8888777543 23567777776664
No 51
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.31 E-value=7.7e-11 Score=136.55 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=92.6
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hC---C-CCcEEEEeCC----CCC-C----------CCCCeEE
Q 001947 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL---P-SGWKCLVCGA----SDS-Q----------LPPNFIK 266 (992)
Q Consensus 212 e~r~~l~~~~d~~~Vlvs~Gg~~~~---~~ll~~---l~---~-~~~~~Vv~G~----~~~-~----------l~~nv~v 266 (992)
.+++.++++.+++ ++++.|+.... ..+++. +. + .++.++++|. +.. . +.++|.+
T Consensus 232 ~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~ 310 (438)
T 3c48_A 232 RSRRELGIPLHTK-VVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310 (438)
T ss_dssp HHHHHTTCCSSSE-EEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEE
T ss_pred hhHHhcCCCCCCc-EEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEE
Confidence 4788888876665 56677776542 223332 21 1 2678888887 321 1 3578999
Q ss_pred cCCC--CCHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 001947 267 LPKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (992)
Q Consensus 267 ~~f~--~~~p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~ 340 (992)
.+++ ++++++|+.||++|..+ ..+++.|||++|+|+|+.+..+ +.+.+++.+.|+.++..+ ++.|.
T Consensus 311 ~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~------~~e~i~~~~~g~~~~~~d--~~~la 382 (438)
T 3c48_A 311 LDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG------LPIAVAEGETGLLVDGHS--PHAWA 382 (438)
T ss_dssp ECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTT------HHHHSCBTTTEEEESSCC--HHHHH
T ss_pred cCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCC------hhHHhhCCCcEEECCCCC--HHHHH
Confidence 9998 45779999999999754 2468999999999999987432 344566667898887655 57899
Q ss_pred HHHHHHhhCCC
Q 001947 341 PYLERAISLKP 351 (992)
Q Consensus 341 ~al~~ll~~~~ 351 (992)
++|.++++++.
T Consensus 383 ~~i~~l~~~~~ 393 (438)
T 3c48_A 383 DALATLLDDDE 393 (438)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHcCHH
Confidence 99999998653
No 52
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.28 E-value=3.1e-11 Score=135.87 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=132.5
Q ss_pred CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCccchhhhhccCcceEEEEe
Q 001947 629 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 708 (992)
Q Consensus 629 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~ 708 (992)
.|++|.+.++||.++|||||||..+|++.|++.++++ ++++.++|..++. +-..|+|||. +...
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sG----------s~~~s~~GG~---v~w~ 185 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSG----------SACRSLYGGF---VEWQ 185 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCG----------GGGGGGSSSE---EEEC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCC----------CcchHhhCCE---EEEE
Confidence 4899999999999999999999999999999999998 4688888887643 3367999995 3332
Q ss_pred ec----Ccc-ceeeecCC---CCeEEEEEeCCCccccCCCCCcchhhhhhcchhhhhhhccccCCccCCCCCCCCCCCcc
Q 001947 709 CQ----PAE-LLGVVEIP---SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPE 780 (992)
Q Consensus 709 ~~----~~~-~~~~v~~p---~~~~~vl~dsgi~~~~~~~~y~~rr~~~~~~~~~i~~~a~~~l~~~~~~~~~~~~~~~~ 780 (992)
.. ... +..+++.+ ++++++++-......+..+ |
T Consensus 186 ~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-----T---------------------------------- 226 (414)
T 3f0n_A 186 MGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-----T---------------------------------- 226 (414)
T ss_dssp CCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-----H----------------------------------
T ss_pred eccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-----h----------------------------------
Confidence 11 111 11233321 4677766641111111110 0
Q ss_pred hhhhhHHHHhhhhHHHhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccccccchh--hhHHH
Q 001947 781 VDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYE--NFRVK 858 (992)
Q Consensus 781 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E--~~Rv~ 858 (992)
+.++ ..+|... ...+.+.+ ..|+.
T Consensus 227 -------------~~mr------------~~l~ts~-----------------------------~~~~~v~~~~~~~~~ 252 (414)
T 3f0n_A 227 -------------VGMQ------------TSVETST-----------------------------LLKFRAESVVPERMK 252 (414)
T ss_dssp -------------HHHH------------HHHHHCH-----------------------------HHHHHHHHTHHHHHH
T ss_pred -------------HHHH------------hhcccCc-----------------------------cHHHHHHHHHHHHHH
Confidence 0000 0000000 01222332 35788
Q ss_pred HHHHHHhccCChhHHHHHHHHHH-H---hhhhhhh----cCCCCchHHHHHHHHHHHhhhccccCCCCCcccceeecccc
Q 001947 859 AFKALLTAAASDDQLTSLGELLY-Q---CHYSYSA----CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGS 930 (992)
Q Consensus 859 ~~~~~l~~~~~~~d~~~lG~lm~-~---sH~slr~----~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~ 930 (992)
.++++|.++ |++.||++|. + -|..|++ +-.-.|++.++++.++++.+. ..|++++.++|||
T Consensus 253 ~l~~AL~~g----D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~------~~g~~~~~tsdAG- 321 (414)
T 3f0n_A 253 EMTRCIQEQ----DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH------HGQTKVAYTFDAG- 321 (414)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHH------HTSCCEEEECCSS-
T ss_pred HHHHHHHcC----CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHh------cCCceEEEEECCC-
Confidence 999999997 9999999865 3 5887776 123588999999998875210 0378899999999
Q ss_pred CceEEEEccCCcccHHHHHHHHHHHHh
Q 001947 931 GGTICVIGRNSLRSSEQVLEIQQRYKD 957 (992)
Q Consensus 931 GG~vi~l~~~~~~~~~~~~~i~~~y~~ 957 (992)
.+|+++.+++ +.+++.+.+.+.|..
T Consensus 322 -Pnv~vl~~~~-~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 322 -PNAVIFTLED-TVAEFVAAVRHSFPP 346 (414)
T ss_dssp -SCEEEEEEHH-HHHHHHHHHHHHSCC
T ss_pred -CCEEEEEecc-cHHHHHHHHHHhcCC
Confidence 8777766532 235677777665654
No 53
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.27 E-value=7.6e-11 Score=134.10 Aligned_cols=289 Identities=12% Similarity=0.042 Sum_probs=161.3
Q ss_pred ccEEEEEeccC---CCcccHHHHHHHHHHHHHCCCcEEEEeCCCCccc-ccccCCCceeeeeecccCCcccccccccChH
Q 001947 14 KHLVFAYYVTG---HGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF-TSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (992)
Q Consensus 14 ~~~~Il~~v~g---~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (992)
++|+|+|+... ...|+...+..++++| +||+|++++....... ........+.+...... .....
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~- 71 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRS--------VMLPT- 71 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSS--------SCCSC-
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEcccc--------ccccc-
Confidence 44666666542 2368888999999999 6999999977643210 10001111222111000 00000
Q ss_pred HHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-Cc--hHHHHHHHcCCcEEEEecCchhH------HHH----HH
Q 001947 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP--VACRAAADAGIRSVCVTNFSWDF------IYA----EY 156 (992)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~--~a~~aA~~~gIP~v~is~~~~~~------~~~----~~ 156 (992)
........+++++.+||+|+... .+ ....+++..++|.+.++...... ... ..
T Consensus 72 --------------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~ 137 (394)
T 3okp_A 72 --------------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKI 137 (394)
T ss_dssp --------------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHH
T ss_pred --------------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHH
Confidence 01233446778899999999865 22 33445678899844432212110 000 00
Q ss_pred Hhhhc---cchHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCccccc----CCCChHHHHHHhCCCCCCcEEEEE
Q 001947 157 VMAAG---HHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR----LHKSRKEVRKELGIEDDVKLLILN 229 (992)
Q Consensus 157 ~~~~~---~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~vp~~~~~----~~~~r~e~r~~l~~~~d~~~Vlvs 229 (992)
..... .......+.+.+.+...+.+ .+.+.|+.... ....+.++++.++++++++ ++++
T Consensus 138 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~-------------~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 203 (394)
T 3okp_A 138 GTEVDVLTYISQYTLRRFKSAFGSHPTF-------------EHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTP-VIAC 203 (394)
T ss_dssp HHHCSEEEESCHHHHHHHHHHHCSSSEE-------------EECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCC-EEEE
T ss_pred HHhCCEEEEcCHHHHHHHHHhcCCCCCe-------------EEecCCcCHHHcCCCCchhhHHHHHhcCCCcCce-EEEE
Confidence 00000 00011111222222111111 11222222111 1112457788899876655 4567
Q ss_pred cCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCCC---------CCCCeEEcCCC--CCHHHHHhhcCEEEe-----
Q 001947 230 FGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFIKLPKD--AYTPDFMAASDCMLG----- 285 (992)
Q Consensus 230 ~Gg~~~~---~~ll~~---l~--~~~~~~Vv~G~~~~~---------l~~nv~v~~f~--~~~p~lL~aaDlvIt----- 285 (992)
.|+.... ..+++. +. .+++.++++|..... +.+++++.+++ ++++++|+.||++|.
T Consensus 204 ~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~ 283 (394)
T 3okp_A 204 NSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTR 283 (394)
T ss_dssp ESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCB
T ss_pred EeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccc
Confidence 7776542 223332 21 257888889875531 35789999998 467799999999997
Q ss_pred ------cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 286 ------KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 286 ------~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
-+..+++.|||++|+|+|+.+.++..|. +.+ |.|..++..+ ++.|.++|.++++++
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~------i~~-~~g~~~~~~d--~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPET------VTP-ATGLVVEGSD--VDKLSELLIELLDDP 345 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGG------CCT-TTEEECCTTC--HHHHHHHHHHHHTCH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHH------Hhc-CCceEeCCCC--HHHHHHHHHHHHhCH
Confidence 4455799999999999999876554443 334 4888887655 589999999999755
No 54
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.26 E-value=6.9e-10 Score=126.75 Aligned_cols=132 Identities=18% Similarity=0.146 Sum_probs=94.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hC-CCCcEEEEeCCCCCC-----------CCCCeEEcCCCC
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL-PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~~~---~~ll~~---l~-~~~~~~Vv~G~~~~~-----------l~~nv~v~~f~~ 271 (992)
+.++++.++++++.+ ++++.|+.... ..++++ +. ..++.++++|..... +.++|.+.++.+
T Consensus 198 ~~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~ 276 (394)
T 2jjm_A 198 MTQLKKEYGISESEK-ILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQD 276 (394)
T ss_dssp CHHHHHHTTCC---C-EEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCS
T ss_pred hHHHHHHcCCCCCCe-EEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchh
Confidence 456788888866655 45566776542 223332 21 235788888865431 357898999888
Q ss_pred CHHHHHhhcCEEEe----cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 001947 272 YTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (992)
Q Consensus 272 ~~p~lL~aaDlvIt----~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll 347 (992)
+++++|+.||++|. -+..+++.|||++|+|+|+.+.++..|. +++.+.|..++..+ ++.|.++|.+++
T Consensus 277 ~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~------v~~~~~g~~~~~~d--~~~la~~i~~l~ 348 (394)
T 2jjm_A 277 NVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEV------IQHGDTGYLCEVGD--TTGVADQAIQLL 348 (394)
T ss_dssp CTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTT------CCBTTTEEEECTTC--HHHHHHHHHHHH
T ss_pred hHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHH------hhcCCceEEeCCCC--HHHHHHHHHHHH
Confidence 89999999999994 3445789999999999999987665554 55557898887655 588999999999
Q ss_pred hCC
Q 001947 348 SLK 350 (992)
Q Consensus 348 ~~~ 350 (992)
+++
T Consensus 349 ~~~ 351 (394)
T 2jjm_A 349 KDE 351 (394)
T ss_dssp HCH
T ss_pred cCH
Confidence 865
No 55
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.25 E-value=6.8e-11 Score=136.19 Aligned_cols=148 Identities=10% Similarity=-0.027 Sum_probs=100.6
Q ss_pred HHHHHhCCCCCCcEEEEEcCCC---CCh-hhHHHh---hC--CCCcEEEEe-CCCCC--C-------CCCCeEEcCCCC-
Q 001947 212 EVRKELGIEDDVKLLILNFGGQ---PAG-WKLKEE---YL--PSGWKCLVC-GASDS--Q-------LPPNFIKLPKDA- 271 (992)
Q Consensus 212 e~r~~l~~~~d~~~Vlvs~Gg~---~~~-~~ll~~---l~--~~~~~~Vv~-G~~~~--~-------l~~nv~v~~f~~- 271 (992)
+.++.+ ++++++++++|.. +.+ ..++++ +. .+++.+++. |++.. + ..++++++++..
T Consensus 216 ~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~ 292 (403)
T 3ot5_A 216 PILENL---GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDA 292 (403)
T ss_dssp HHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred HHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCH
Confidence 445544 4567788876642 222 233332 21 245666665 65421 1 246899998876
Q ss_pred -CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 272 -YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 272 -~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
+++.+|++||++|+.+|. ...||+++|+|+|+++.. .+++. +.+.|.++.+.. +++.+.+++.++++++
T Consensus 293 ~~~~~l~~~ad~vv~~SGg-~~~EA~a~g~PvV~~~~~--~~~~e----~v~~g~~~lv~~---d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 293 IDFHNFLRKSYLVFTDSGG-VQEEAPGMGVPVLVLRDT--TERPE----GIEAGTLKLIGT---NKENLIKEALDLLDNK 362 (403)
T ss_dssp HHHHHHHHHEEEEEECCHH-HHHHGGGTTCCEEECCSS--CSCHH----HHHHTSEEECCS---CHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcCEEEECCcc-HHHHHHHhCCCEEEecCC--Ccchh----heeCCcEEEcCC---CHHHHHHHHHHHHcCH
Confidence 577999999999999874 348999999999999632 23322 346788887763 4688999999998765
Q ss_pred CCc---------cCCCCHHHHHHHHHHHHHc
Q 001947 351 PCY---------EGGINGGEVAAHILQETAI 372 (992)
Q Consensus 351 ~~~---------~~~~~G~~~aA~~I~~~~~ 372 (992)
..+ ....+.++++++.|.+.+.
T Consensus 363 ~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 363 ESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 321 1578889999999998764
No 56
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.25 E-value=6.9e-11 Score=135.84 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHHHHHhC-CCCCCcEEEEEcC---CCCCh-hhHHHh---hC--CCCcEEEEe-CCCCC--C-------CCCCeEEcCCC
Q 001947 211 KEVRKELG-IEDDVKLLILNFG---GQPAG-WKLKEE---YL--PSGWKCLVC-GASDS--Q-------LPPNFIKLPKD 270 (992)
Q Consensus 211 ~e~r~~l~-~~~d~~~Vlvs~G---g~~~~-~~ll~~---l~--~~~~~~Vv~-G~~~~--~-------l~~nv~v~~f~ 270 (992)
+++++.++ +++++++|+++++ +.+.+ ..++++ +. .+++.+++. |++.. + ..++++++++.
T Consensus 217 ~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~l 296 (396)
T 3dzc_A 217 ATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQ 296 (396)
T ss_dssp HHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCC
T ss_pred HHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCC
Confidence 56777888 5677888888873 33333 233333 22 246766664 65421 1 24689988776
Q ss_pred C--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 001947 271 A--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (992)
Q Consensus 271 ~--~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~ 348 (992)
. +++.+|++||++|+.+| +++.||+++|+|+|+++. ..+.+ .+.+.|.++.+.. +++.|.+++.++++
T Consensus 297 g~~~~~~l~~~ad~vv~~SG-g~~~EA~a~G~PvV~~~~--~~~~~----e~v~~G~~~lv~~---d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 297 QYLPFVYLMDRAHIILTDSG-GIQEEAPSLGKPVLVMRE--TTERP----EAVAAGTVKLVGT---NQQQICDALSLLLT 366 (396)
T ss_dssp CHHHHHHHHHHCSEEEESCS-GGGTTGGGGTCCEEECCS--SCSCH----HHHHHTSEEECTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCEEEECCc-cHHHHHHHcCCCEEEccC--CCcch----HHHHcCceEEcCC---CHHHHHHHHHHHHc
Confidence 4 46699999999999998 666899999999999752 33432 2456688876653 36889999999997
Q ss_pred CCCCc---------cCCCCHHHHHHHHHH
Q 001947 349 LKPCY---------EGGINGGEVAAHILQ 368 (992)
Q Consensus 349 ~~~~~---------~~~~~G~~~aA~~I~ 368 (992)
++..+ ....+.++++++.|.
T Consensus 367 d~~~~~~m~~~~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 367 DPQAYQAMSQAHNPYGDGKACQRIADILA 395 (396)
T ss_dssp CHHHHHHHHTSCCTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCcCChHHHHHHHHHh
Confidence 65421 146777888877764
No 57
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.24 E-value=1.9e-10 Score=132.72 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=92.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch---hhHHHh---hCC----CCcEEEEeCCCCCC-----------CCCCeEEc
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKEE---YLP----SGWKCLVCGASDSQ-----------LPPNFIKL 267 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~-~~---~~ll~~---l~~----~~~~~Vv~G~~~~~-----------l~~nv~v~ 267 (992)
+.++++.++++++ .++++.|+.. .. ..++++ +.. +++.++++|..... ++.++.+.
T Consensus 239 ~~~~~~~~~~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~ 316 (439)
T 3fro_A 239 KKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316 (439)
T ss_dssp HHHHHHHHTCCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHcCCCCC--cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEc
Confidence 4578888998766 5677888877 42 233332 322 57788899876521 35445567
Q ss_pred CCCC--CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 001947 268 PKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (992)
Q Consensus 268 ~f~~--~~p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~ 341 (992)
++.+ .++++|+.||++|..+ -.+++.|||++|+|+|+.+.+ ...+.++ .|.|..++..+ ++.|.+
T Consensus 317 g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~------~~~e~~~-~~~g~~~~~~d--~~~la~ 387 (439)
T 3fro_A 317 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG------GLRDIIT-NETGILVKAGD--PGELAN 387 (439)
T ss_dssp SCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESST------HHHHHCC-TTTCEEECTTC--HHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCC------CcceeEE-cCceEEeCCCC--HHHHHH
Confidence 7664 4678999999999643 236899999999999998643 2333343 46899888765 589999
Q ss_pred HHHHHhh-CCCC
Q 001947 342 YLERAIS-LKPC 352 (992)
Q Consensus 342 al~~ll~-~~~~ 352 (992)
+|.++++ ++..
T Consensus 388 ~i~~ll~~~~~~ 399 (439)
T 3fro_A 388 AILKALELSRSD 399 (439)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHhcCHHH
Confidence 9999998 6543
No 58
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.22 E-value=5.8e-10 Score=125.91 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=97.8
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHhh---C---CCCcEEEEeCCCCCC----------CCCCeEEcCCC
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY---L---PSGWKCLVCGASDSQ----------LPPNFIKLPKD 270 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~~~---~~ll~~l---~---~~~~~~Vv~G~~~~~----------l~~nv~v~~f~ 270 (992)
+.++++.++++++++ ++++.|+.... ..+++.+ . .+++.++++|..... +.+++++.++.
T Consensus 183 ~~~~~~~~~~~~~~~-~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~ 261 (374)
T 2iw1_A 183 REIYRQKNGIKEQQN-LLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGR 261 (374)
T ss_dssp HHHHHHHTTCCTTCE-EEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCC
T ss_pred HHHHHHHhCCCCCCe-EEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCHHHHHHHHHHcCCCCcEEECCCc
Confidence 456788898876654 56677766542 2344432 1 136788888875532 35789999998
Q ss_pred CCHHHHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe-cCCCChhhHHHHHHH
Q 001947 271 AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI-RRDLLTGHWKPYLER 345 (992)
Q Consensus 271 ~~~p~lL~aaDlvIt~----~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~-~~~~~~~~l~~al~~ 345 (992)
++++++|+.||++|.. +..+++.|||++|+|+|+.+..+.. +.+++.+.|..+. ..+ ++.+.++|.+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~------e~i~~~~~g~~~~~~~~--~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA------HYIADANCGTVIAEPFS--QEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT------HHHHHHTCEEEECSSCC--HHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCch------hhhccCCceEEeCCCCC--HHHHHHHHHH
Confidence 8999999999999973 3557899999999999999865443 3477788999997 434 5889999999
Q ss_pred HhhCC
Q 001947 346 AISLK 350 (992)
Q Consensus 346 ll~~~ 350 (992)
+++++
T Consensus 334 l~~~~ 338 (374)
T 2iw1_A 334 ALTQS 338 (374)
T ss_dssp HHHCH
T ss_pred HHcCh
Confidence 99865
No 59
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.20 E-value=1.1e-09 Score=125.95 Aligned_cols=299 Identities=13% Similarity=0.026 Sum_probs=164.3
Q ss_pred CCccEEEEEeccCCC-cccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCCcccccccccChHH
Q 001947 12 SSKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLA 90 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G-~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (992)
.|++|+|+++..... .|+-..+..++++|.++||+|++++............ . +... . .+. ....... .
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~--~--~~~~-~-~~~---~~~~~~~-~ 106 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTK--T--FHNA-L-QGN---ESLKLTE-E 106 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHH--H--HHHH-H-TTC---CSCCCCH-H
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhc--c--ccee-e-ccc---ccccccH-H
Confidence 467788888877654 6778888899999999999999887653211000000 0 0000 0 000 0001111 0
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECCCchHHHHH-HHcCCcEEEEecCchhHHHHHHHhhhccchHHHHH
Q 001947 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA-ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (992)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~~aA-~~~gIP~v~is~~~~~~~~~~~~~~~~~~~~~i~~ 169 (992)
....+. .......+++++.+||+|+++.......++ ....+|+|...+..+...... ...
T Consensus 107 ~~~~~~--------~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-----------~~~ 167 (416)
T 2x6q_A 107 MKELYL--------NVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRCHIDLSSPNRE-----------FWE 167 (416)
T ss_dssp HHHHHH--------HHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSCCCSCEEEECCSCCSSCCHH-----------HHH
T ss_pred HHHHHH--------HHHHHHHHHHhhcCCCEEEEeccchhhHHHHHHhcCCEEEEEccccCCccHH-----------HHH
Confidence 111111 122334556778899999987633222111 112388877633221100000 001
Q ss_pred HHHhhccccceee-ecCCCC--CCC-CCCceeecCcccccC---CC---ChHHHHHHhCCCCCCcEEEEEcCCCCCh---
Q 001947 170 QIAEDYSHCEFLI-RLPGYC--PMP-AFRDVIDVPLVVRRL---HK---SRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (992)
Q Consensus 170 ~l~~~y~~~d~ll-~~~~~~--~~p-~~~~v~~vp~~~~~~---~~---~r~e~r~~l~~~~d~~~Vlvs~Gg~~~~--- 236 (992)
.+...+..++.++ ..+... ..+ ....+.+.|+..... .. .+.++++.+++++++++ +++.|.....
T Consensus 168 ~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-i~~vGrl~~~Kg~ 246 (416)
T 2x6q_A 168 FLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPI-ITQVSRFDPWKGI 246 (416)
T ss_dssp HHHHHHTTSSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCE-EEEECCCCTTSCH
T ss_pred HHHHHHHhCCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcE-EEEEeccccccCH
Confidence 1111222333332 211110 011 111233333322111 11 23467888898777664 5566766542
Q ss_pred hhHHHh---hC--CCCcEEEEeCCCCC----------C------CCCCeEEcCCCC-----CHHHHHhhcCEEEecC---
Q 001947 237 WKLKEE---YL--PSGWKCLVCGASDS----------Q------LPPNFIKLPKDA-----YTPDFMAASDCMLGKI--- 287 (992)
Q Consensus 237 ~~ll~~---l~--~~~~~~Vv~G~~~~----------~------l~~nv~v~~f~~-----~~p~lL~aaDlvIt~~--- 287 (992)
..+++. +. .+++.++++|.... . +.++|++.++.+ +++++|+.||++|..+
T Consensus 247 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E 326 (416)
T 2x6q_A 247 FDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRE 326 (416)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcC
Confidence 223332 21 24788888887632 0 357899988654 5778999999999765
Q ss_pred -ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 288 -GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 288 -G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
..+++.|||++|+|+|+.+. ..+.+.+++.+.|..++ +++.|.++|.++++++
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~------~g~~e~i~~~~~g~l~~----d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAV------GGIKFQIVDGETGFLVR----DANEAVEVVLYLLKHP 380 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESC------HHHHHHCCBTTTEEEES----SHHHHHHHHHHHHHCH
T ss_pred CCccHHHHHHHcCCCEEEccC------CCChhheecCCCeEEEC----CHHHHHHHHHHHHhCH
Confidence 34789999999999999863 34566677777898886 4688999999999765
No 60
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.16 E-value=5e-10 Score=127.30 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=101.7
Q ss_pred HHHHHhC-CCCCCcEEEEEcCCCCC---h-hhHHHh---hC--CCCcEEEEe-CCCCC--C-------CCCCeEEcCCC-
Q 001947 212 EVRKELG-IEDDVKLLILNFGGQPA---G-WKLKEE---YL--PSGWKCLVC-GASDS--Q-------LPPNFIKLPKD- 270 (992)
Q Consensus 212 e~r~~l~-~~~d~~~Vlvs~Gg~~~---~-~~ll~~---l~--~~~~~~Vv~-G~~~~--~-------l~~nv~v~~f~- 270 (992)
++++.++ +++++++++++.|.... + ..++++ +. .+++.+++. |.+.. + ..+++++.++.
T Consensus 193 ~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~ 272 (384)
T 1vgv_A 193 ELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQE 272 (384)
T ss_dssp HHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 4566677 76677788888886442 2 223333 21 246766654 64321 1 13689885544
Q ss_pred -CCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 001947 271 -AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (992)
Q Consensus 271 -~~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~ 349 (992)
.+++++|+.||++|+.+| +++.||+++|+|+|+.+..+... .+.+.|.|+.++. +++.|.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~~------e~v~~g~g~lv~~---d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 273 YLPFVWLMNHAWLILTDSG-GIQEEAPSLGKPVLVMRDTTERP------EAVTAGTVRLVGT---DKQRIVEEVTRLLKD 342 (384)
T ss_dssp HHHHHHHHHHCSEEEESSS-TGGGTGGGGTCCEEEESSCCSCH------HHHHHTSEEEECS---SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCc-chHHHHHHcCCCEEEccCCCCcc------hhhhCCceEEeCC---CHHHHHHHHHHHHhC
Confidence 357799999999999986 56899999999999998522221 1345579998865 468999999999986
Q ss_pred CCCc---------cCCCCHHHHHHHHHHHHHc
Q 001947 350 KPCY---------EGGINGGEVAAHILQETAI 372 (992)
Q Consensus 350 ~~~~---------~~~~~G~~~aA~~I~~~~~ 372 (992)
+..+ .......+++++.+++...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (384)
T 1vgv_A 343 ENEYQAMSRAHNPYGDGQACSRILEALKNNRI 374 (384)
T ss_dssp HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCC
T ss_pred hHHHhhhhhccCCCcCCCHHHHHHHHHHHHHH
Confidence 6321 1356778888888887653
No 61
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.08 E-value=7.6e-10 Score=125.58 Aligned_cols=141 Identities=12% Similarity=-0.073 Sum_probs=94.0
Q ss_pred CCcEEEEEcCCCCC--h-hhHHHh---hC--CCCcEEEE-eCCCCC--C-------CCCCeEEcCCCC--CHHHHHhhcC
Q 001947 222 DVKLLILNFGGQPA--G-WKLKEE---YL--PSGWKCLV-CGASDS--Q-------LPPNFIKLPKDA--YTPDFMAASD 281 (992)
Q Consensus 222 d~~~Vlvs~Gg~~~--~-~~ll~~---l~--~~~~~~Vv-~G~~~~--~-------l~~nv~v~~f~~--~~p~lL~aaD 281 (992)
++++|+++.|.... + ..++++ +. .+++.+++ +|.+.. + ..+++++.++.. +++++|++||
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad 276 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASL 276 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEE
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCc
Confidence 45677777774421 2 223333 21 24577666 475431 1 135898885443 5679999999
Q ss_pred EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc--------
Q 001947 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY-------- 353 (992)
Q Consensus 282 lvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~-------- 353 (992)
++|+.+| +.+.||+++|+|+|+.+..+..+ . +.+.|.|+.+.. +++.|.++|.++++++..+
T Consensus 277 ~~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~--~----~~~~g~g~lv~~---d~~~la~~i~~ll~d~~~~~~~~~~~~ 346 (376)
T 1v4v_A 277 LLVTDSG-GLQEEGAALGVPVVVLRNVTERP--E----GLKAGILKLAGT---DPEGVYRVVKGLLENPEELSRMRKAKN 346 (376)
T ss_dssp EEEESCH-HHHHHHHHTTCCEEECSSSCSCH--H----HHHHTSEEECCS---CHHHHHHHHHHHHTCHHHHHHHHHSCC
T ss_pred EEEECCc-CHHHHHHHcCCCEEeccCCCcch--h----hhcCCceEECCC---CHHHHHHHHHHHHhChHhhhhhcccCC
Confidence 9999885 55779999999999986433222 2 345688888752 5789999999999865321
Q ss_pred -cCCCCHHHHHHHHHHHHHc
Q 001947 354 -EGGINGGEVAAHILQETAI 372 (992)
Q Consensus 354 -~~~~~G~~~aA~~I~~~~~ 372 (992)
-...+.++++++.+++.+.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 1356788888888888764
No 62
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.06 E-value=6.2e-09 Score=122.94 Aligned_cols=131 Identities=17% Similarity=0.054 Sum_probs=92.0
Q ss_pred HHHHHHhC-----CCCCCcEEEEEcCCCCCh---hhHHHhhC------CCCcEEEEeCC--CC--------------CC-
Q 001947 211 KEVRKELG-----IEDDVKLLILNFGGQPAG---WKLKEEYL------PSGWKCLVCGA--SD--------------SQ- 259 (992)
Q Consensus 211 ~e~r~~l~-----~~~d~~~Vlvs~Gg~~~~---~~ll~~l~------~~~~~~Vv~G~--~~--------------~~- 259 (992)
.++++.++ ++.+++ ++++.|+.... ..+++++. +..+.++++|. .. .+
T Consensus 245 ~~~r~~~~~~~~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~ 323 (499)
T 2r60_A 245 AKITKYLERDLGSERMELP-AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK 323 (499)
T ss_dssp HHHHHHHHHHSCGGGTTSC-EEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCc-EEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHH
Confidence 56777777 666665 46777877653 23444321 12346778887 21 11
Q ss_pred ---------CCCCeEEcCCC--CCHHHHHhhc----CEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 001947 260 ---------LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (992)
Q Consensus 260 ---------l~~nv~v~~f~--~~~p~lL~aa----DlvIt~~---G-~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~l 320 (992)
+.++|++.|++ ++++++|+.| |++|..+ | .+++.|||++|+|+|+.+.. ...+.+
T Consensus 324 l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~------g~~e~v 397 (499)
T 2r60_A 324 IIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG------GPAEIL 397 (499)
T ss_dssp HHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB------HHHHHT
T ss_pred HHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC------CHHHHh
Confidence 35789999997 4678999999 9999643 2 36899999999999998632 345556
Q ss_pred HHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 321 EFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 321 e~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
.....|..++..+ ++.|.++|.++++++
T Consensus 398 ~~~~~g~l~~~~d--~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 398 DGGKYGVLVDPED--PEDIARGLLKAFESE 425 (499)
T ss_dssp GGGTSSEEECTTC--HHHHHHHHHHHHSCH
T ss_pred cCCceEEEeCCCC--HHHHHHHHHHHHhCH
Confidence 6666888887655 578999999999754
No 63
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.02 E-value=3.1e-10 Score=126.98 Aligned_cols=260 Identities=15% Similarity=0.104 Sum_probs=146.8
Q ss_pred CccEEEEEeccC---------------CCcccHHHHHHHHHHHHHCCCcEEEEeCCCCcccccccCCCceeeeeecccCC
Q 001947 13 SKHLVFAYYVTG---------------HGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCG 77 (992)
Q Consensus 13 m~~~~Il~~v~g---------------~G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g 77 (992)
|+.|+|+++... .+.|.-..+..++++|.++||+|++++........ ..+.+..
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-----~~~~~~~------ 69 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR-----PGLTVVP------ 69 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----TTEEECS------
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----Ccceecc------
Confidence 566788887766 23677888889999999999999999765422111 1111100
Q ss_pred cccccccccChHHHHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchh--HHHHH
Q 001947 78 AVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD--FIYAE 155 (992)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~~aA~~~gIP~v~is~~~~~--~~~~~ 155 (992)
... . ....+++++.+||+|++........+++..++| |...+-.+. .....
T Consensus 70 --------~~~---~---------------~~l~~~l~~~~~Dvi~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~~~d~ 122 (342)
T 2iuy_A 70 --------AGE---P---------------EEIERWLRTADVDVVHDHSGGVIGPAGLPPGTA-FISSHHFTTRPVNPVG 122 (342)
T ss_dssp --------CCS---H---------------HHHHHHHHHCCCSEEEECSSSSSCSTTCCTTCE-EEEEECSSSBCSCCTT
T ss_pred --------CCc---H---------------HHHHHHHHhcCCCEEEECCchhhHHHHhhcCCC-EEEecCCCCCcccceE
Confidence 000 0 023456778899999988743333346667899 654221111 00000
Q ss_pred HHhhhccchHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCCCC
Q 001947 156 YVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (992)
Q Consensus 156 ~~~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~ 235 (992)
.+.. .. ...+.+.. +....+.+.|+........+. .. ++++ ++++.|+...
T Consensus 123 ii~~----S~----~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~------~~-~~~~-~i~~vG~~~~ 173 (342)
T 2iuy_A 123 CTYS----SR----AQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD------QV-AKED-FLLFMGRVSP 173 (342)
T ss_dssp EEES----CH----HHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT------CC-CCCS-CEEEESCCCG
T ss_pred EEEc----CH----HHHHHHhc-------------CCceEEEcCCCChhhcCcccc------cC-CCCC-EEEEEecccc
Confidence 0000 01 11111111 001122222322111111000 11 2333 4556777664
Q ss_pred h---hhHHHhhCCCCcEEEEeCCCCCC---------CCCCeEEcCCCCCH--HHHHhhcCEEEecC--------------
Q 001947 236 G---WKLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYT--PDFMAASDCMLGKI-------------- 287 (992)
Q Consensus 236 ~---~~ll~~l~~~~~~~Vv~G~~~~~---------l~~nv~v~~f~~~~--p~lL~aaDlvIt~~-------------- 287 (992)
. ..+++.+...++.++++|..... +.+++++.+++++. +++|+.||++|..+
T Consensus 174 ~Kg~~~li~a~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~ 253 (342)
T 2iuy_A 174 HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEP 253 (342)
T ss_dssp GGTHHHHHHHHHHHTCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCC
T ss_pred ccCHHHHHHHHHhcCcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccC
Confidence 2 23444332226778888876431 35899999999754 79999999999532
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH--cCcEEEEecCCCChhhHHHHHHHHhh
Q 001947 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF--YQGGVEMIRRDLLTGHWKPYLERAIS 348 (992)
Q Consensus 288 G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~--~G~Gi~v~~~~~~~~~l~~al~~ll~ 348 (992)
-.+++.|||++|+|+|+.+..+ +.+.+++ ...|..++. +.+.|.++|.++++
T Consensus 254 ~~~~~~EAma~G~PvI~s~~~~------~~e~~~~~~~~~g~~~~~---d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 254 GATVVSEAAVSGTPVVGTGNGC------LAEIVPSVGEVVGYGTDF---APDEARRTLAGLPA 307 (342)
T ss_dssp CCHHHHHHHHTTCCEEECCTTT------HHHHGGGGEEECCSSSCC---CHHHHHHHHHTSCC
T ss_pred ccHHHHHHHhcCCCEEEcCCCC------hHHHhcccCCCceEEcCC---CHHHHHHHHHHHHH
Confidence 2468999999999999987432 4455666 567777765 36788888888764
No 64
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.98 E-value=8.3e-09 Score=117.75 Aligned_cols=291 Identities=14% Similarity=0.063 Sum_probs=156.2
Q ss_pred cEEEEEeccCC---CcccHHHHHHHHHHHHHCCCcEEEEeCCCCcc-cccccCCCceeeeeecccCCcccccccccChHH
Q 001947 15 HLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV-FTSEIQSPRLFIRKVLLDCGAVQADALTVDRLA 90 (992)
Q Consensus 15 ~~~Il~~v~g~---G~GHv~r~laLA~~L~~~GheV~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (992)
.|+|+|+.... ..|+-..+..++++|.++||+|++++...... ..... . ..+ . .. ......
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------~-~~~-~--~~-----~~~~~~ 84 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYV------V-SGG-K--AV-----PIPYNG 84 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTE------E-ECC-C--CC-----------
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccc------c-cCC-c--EE-----eccccC
Confidence 46777776542 25777899999999999999999998764221 11110 0 000 0 00 000000
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC---CchHHHHHHHcCCcEEEEec--CchhHHHHHHHhhhccchH
Q 001947 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCVTN--FSWDFIYAEYVMAAGHHHR 165 (992)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~a~~aA~~~gIP~v~is~--~~~~~~~~~~~~~~~~~~~ 165 (992)
....+.. .. .......+++++.+||+|++.. ...+..+++..++|+|...+ +........+. ..
T Consensus 85 ---~~~~~~~-~~-~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~----~~-- 153 (406)
T 2gek_A 85 ---SVARLRF-GP-ATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQ----GI-- 153 (406)
T ss_dssp ---------C-CH-HHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSHHHHHHHH----ST--
T ss_pred ---Ccccccc-cH-HHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhhhhHHHHH----HH--
Confidence 0000000 11 1234456778889999999764 23355666777999987632 21111111000 00
Q ss_pred HHHHHHHhhccccceeeecCCCC------CCCCCCc-eeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCC-CCh-
Q 001947 166 SIVWQIAEDYSHCEFLIRLPGYC------PMPAFRD-VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQ-PAG- 236 (992)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~~~~~------~~p~~~~-v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~-~~~- 236 (992)
+...+..++.++...... ..+. .+ +.+.|+........+ ...+++.++ .++++.|+. ...
T Consensus 154 -----~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~vi~~~v~~~~~~~~~----~~~~~~~~~-~~i~~~G~~~~~~K 222 (406)
T 2gek_A 154 -----LRPYHEKIIGRIAVSDLARRWQMEALGS-DAVEIPNGVDVASFADAP----LLDGYPREG-RTVLFLGRYDEPRK 222 (406)
T ss_dssp -----THHHHTTCSEEEESSHHHHHHHHHHHSS-CEEECCCCBCHHHHHTCC----CCTTCSCSS-CEEEEESCTTSGGG
T ss_pred -----HHHHHhhCCEEEECCHHHHHHHHHhcCC-CcEEecCCCChhhcCCCc----hhhhccCCC-eEEEEEeeeCcccc
Confidence 001111222222111000 0000 01 111121111000000 001222233 466777877 442
Q ss_pred --hhHHHh---hC--CCCcEEEEeCCCCCC--------CCCCeEEcCCCCCH--HHHHhhcCEEEecCC-----hhHHHH
Q 001947 237 --WKLKEE---YL--PSGWKCLVCGASDSQ--------LPPNFIKLPKDAYT--PDFMAASDCMLGKIG-----YGTVSE 294 (992)
Q Consensus 237 --~~ll~~---l~--~~~~~~Vv~G~~~~~--------l~~nv~v~~f~~~~--p~lL~aaDlvIt~~G-----~~Tv~E 294 (992)
..+++. +. .+++.++++|..... +.+++++.+++++. +++|..||++|..+. .+++.|
T Consensus 223 g~~~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~E 302 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVE 302 (406)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHH
Confidence 223332 32 247888889876531 25789999998754 799999999997642 458999
Q ss_pred HHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 295 ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 295 al~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
|+++|+|+|+.+. ....+.+.+...|..++..+ ++.|.++|.++++++
T Consensus 303 a~a~G~PvI~~~~------~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 303 AMAAGTAVVASDL------DAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDD 350 (406)
T ss_dssp HHHHTCEEEECCC------HHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCH
T ss_pred HHHcCCCEEEecC------CcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 9999999999753 34566677777888887655 578999999999865
No 65
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.90 E-value=6.9e-08 Score=109.00 Aligned_cols=147 Identities=12% Similarity=-0.001 Sum_probs=94.5
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCC---hh-hHHHh---hC--CCCcEEEEe-CCCC--CC-----CC--CCeEEcCCCC-
Q 001947 212 EVRKELGIEDDVKLLILNFGGQPA---GW-KLKEE---YL--PSGWKCLVC-GASD--SQ-----LP--PNFIKLPKDA- 271 (992)
Q Consensus 212 e~r~~l~~~~d~~~Vlvs~Gg~~~---~~-~ll~~---l~--~~~~~~Vv~-G~~~--~~-----l~--~nv~v~~f~~- 271 (992)
++++.+ +++++++++.|.... +. .++++ +. .+++.+++. |+.. .+ +. +++++.++..
T Consensus 197 ~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 273 (375)
T 3beo_A 197 PVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLDV 273 (375)
T ss_dssp HHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred HHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCCH
Confidence 455544 345677788886542 22 23333 21 245665554 3321 01 12 6899866654
Q ss_pred -CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 272 -YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 272 -~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
+++++|+.||++|+.+| +++.||+++|+|+|+.+..+.. ..+.+.|.|..++. +++.|.++|.++++++
T Consensus 274 ~~~~~~~~~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~------~e~v~~g~g~~v~~---d~~~la~~i~~ll~~~ 343 (375)
T 3beo_A 274 IDFHNVAARSYLMLTDSG-GVQEEAPSLGVPVLVLRDTTER------PEGIEAGTLKLAGT---DEETIFSLADELLSDK 343 (375)
T ss_dssp HHHHHHHHTCSEEEECCH-HHHHHHHHHTCCEEECSSCCSC------HHHHHTTSEEECCS---CHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCcEEEECCC-ChHHHHHhcCCCEEEecCCCCC------ceeecCCceEEcCC---CHHHHHHHHHHHHhCh
Confidence 56789999999999885 6799999999999998531221 12345678988863 4689999999999765
Q ss_pred CCc---------cCCCCHHHHHHHHHHHHH
Q 001947 351 PCY---------EGGINGGEVAAHILQETA 371 (992)
Q Consensus 351 ~~~---------~~~~~G~~~aA~~I~~~~ 371 (992)
..+ .......+++++.+++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 344 EAHDKMSKASNPYGDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHHCCCCCTTCCSCHHHHHHHHHHHHT
T ss_pred HhHhhhhhcCCCCCCCcHHHHHHHHHHHHh
Confidence 321 124567777777777654
No 66
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.88 E-value=1.5e-08 Score=115.80 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=137.6
Q ss_pred hHHHHHHHHHcCCCcEEEE--CC-CchHHHHHHHcCCcEEEE-ecC-chh-----HHHHHHHhhhcc----chHHHHHHH
Q 001947 106 ILKDEVEWLNSIKADLVVS--DV-VPVACRAAADAGIRSVCV-TNF-SWD-----FIYAEYVMAAGH----HHRSIVWQI 171 (992)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVs--D~-~~~a~~aA~~~gIP~v~i-s~~-~~~-----~~~~~~~~~~~~----~~~~i~~~l 171 (992)
.+.+..++|+++|||+|++ |. ..++.++|+..|||++.+ ... ++. ...+..+..... ..+...+.+
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~te~~~~~l 161 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITLTEHARRYL 161 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEESSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCCccccccCcHHHHHHHHHhhhceeecCCHHHHHHH
Confidence 4556678899999999996 33 334478889999998766 221 111 011111100000 000011111
Q ss_pred HhhccccceeeecCCCCCCCCCCceeecCccccc-C---CCChHHHHHHhCCCCCCcEEEEEcCCCCC---h---hhHHH
Q 001947 172 AEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-L---HKSRKEVRKELGIEDDVKLLILNFGGQPA---G---WKLKE 241 (992)
Q Consensus 172 ~~~y~~~d~ll~~~~~~~~p~~~~v~~vp~~~~~-~---~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~---~---~~ll~ 241 (992)
.+.... +....+++.|.+... . ...+.++++.+++++ +++|++++|.... . ..+++
T Consensus 162 ~~~G~~-------------~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~ 227 (385)
T 4hwg_A 162 IAEGLP-------------AELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLN 227 (385)
T ss_dssp HHTTCC-------------GGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHH
T ss_pred HHcCCC-------------cCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHH
Confidence 111100 111123333332211 0 112345778889865 5688888875431 1 12333
Q ss_pred hh---CCC-CcEEEEe-CCCCC----CC------CCCeEEcCCCC--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEE
Q 001947 242 EY---LPS-GWKCLVC-GASDS----QL------PPNFIKLPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (992)
Q Consensus 242 ~l---~~~-~~~~Vv~-G~~~~----~l------~~nv~v~~f~~--~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~ 304 (992)
++ ... ++.+++. ++... +. .+|+++++... ++..+|+.||++|+.+|. .+.||+++|+|+|+
T Consensus 228 al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~SGg-v~~EA~alG~Pvv~ 306 (385)
T 4hwg_A 228 SLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDSGT-ITEEASILNLPALN 306 (385)
T ss_dssp HHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECCTT-HHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECCcc-HHHHHHHcCCCEEE
Confidence 32 111 4555543 43211 12 25788876554 356899999999999985 57999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc----------CCCCHHHHHHHHHHHHH
Q 001947 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQETA 371 (992)
Q Consensus 305 iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~~~~----------~~~~G~~~aA~~I~~~~ 371 (992)
++.. .|.+. ..+.|.++.+.. +++.+.+++.++++++..+. .+++.++++++.|.+.+
T Consensus 307 ~~~~--ter~e----~v~~G~~~lv~~---d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 307 IREA--HERPE----GMDAGTLIMSGF---KAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp CSSS--CSCTH----HHHHTCCEECCS---SHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCC--ccchh----hhhcCceEEcCC---CHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 9742 23111 255688777653 36889999999998765421 46788888988888764
No 67
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.80 E-value=2e-08 Score=118.01 Aligned_cols=130 Identities=19% Similarity=0.089 Sum_probs=92.3
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hCCCCcEEEEeCCCCC---C--------CCCCeE-EcCCCC
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YLPSGWKCLVCGASDS---Q--------LPPNFI-KLPKDA 271 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~~~--~-~ll~~---l~~~~~~~Vv~G~~~~---~--------l~~nv~-v~~f~~ 271 (992)
+.++++.++++.+...++++.|..... . .++++ +...++.++++|.... + +++++. +.++..
T Consensus 277 ~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~ 356 (485)
T 1rzu_A 277 KKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNE 356 (485)
T ss_dssp HHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCH
T ss_pred HHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCH
Confidence 457888899887633367788887653 2 23332 3224788888887642 1 457887 688864
Q ss_pred CH-HHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCChh
Q 001947 272 YT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLTG 337 (992)
Q Consensus 272 ~~-p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~---------G~Gi~v~~~~~~~~ 337 (992)
+. +++|+.||++|..+ ..+++.|||++|+|+|+.+. ..+.+.+.+. +.|..++..+ ++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~ 428 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART------GGLADTVIDANHAALASKAATGVQFSPVT--LD 428 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEESSCS--HH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCC------CChhheecccccccccccCCcceEeCCCC--HH
Confidence 44 68999999999643 34689999999999999863 2445555554 6898887655 57
Q ss_pred hHHHHHHHHh
Q 001947 338 HWKPYLERAI 347 (992)
Q Consensus 338 ~l~~al~~ll 347 (992)
.|.++|.+++
T Consensus 429 ~la~~i~~ll 438 (485)
T 1rzu_A 429 GLKQAIRRTV 438 (485)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999999998
No 68
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.67 E-value=8.7e-08 Score=112.52 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=89.7
Q ss_pred hHHHHHHhCCCC--CCcEEEEEcCCCCCh--h-hHHHh---hCCCCcEEEEeCCCCC---C--------CCCCeE-EcCC
Q 001947 210 RKEVRKELGIED--DVKLLILNFGGQPAG--W-KLKEE---YLPSGWKCLVCGASDS---Q--------LPPNFI-KLPK 269 (992)
Q Consensus 210 r~e~r~~l~~~~--d~~~Vlvs~Gg~~~~--~-~ll~~---l~~~~~~~Vv~G~~~~---~--------l~~nv~-v~~f 269 (992)
+.++++.+++++ +. .++++.|..... . .++++ +...++.+++.|.... + ++.++. +.++
T Consensus 277 ~~~~r~~~~~~~~~~~-~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~ 355 (485)
T 2qzs_A 277 KRQLQIAMGLKVDDKV-PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY 355 (485)
T ss_dssp HHHHHHHHTCCCCTTS-CEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC
T ss_pred HHHHHHHcCCCCCCCC-eEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC
Confidence 457888899875 44 455666765542 2 23333 3224788888876531 1 457886 7788
Q ss_pred CCCH-HHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCC
Q 001947 270 DAYT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLL 335 (992)
Q Consensus 270 ~~~~-p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~---------G~Gi~v~~~~~~ 335 (992)
..+. +++|+.||++|..+ ..+++.|||++|+|+|+... ..+.+.+.+. +.|..++..+
T Consensus 356 ~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d-- 427 (485)
T 2qzs_A 356 HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT------GGLADTVSDCSLENLADGVASGFVFEDSN-- 427 (485)
T ss_dssp CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEECSSS--
T ss_pred CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC------CCccceeccCccccccccccceEEECCCC--
Confidence 5443 68999999999644 24689999999999999863 2344555554 6898888665
Q ss_pred hhhHHHHHHHHh
Q 001947 336 TGHWKPYLERAI 347 (992)
Q Consensus 336 ~~~l~~al~~ll 347 (992)
++.|.++|.+++
T Consensus 428 ~~~la~~i~~ll 439 (485)
T 2qzs_A 428 AWSLLRAIRRAF 439 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999999998
No 69
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.61 E-value=5e-06 Score=95.48 Aligned_cols=135 Identities=7% Similarity=-0.092 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChhhHHHhhC--CCCcEEEEeCCCCC-C--CCCCeEEcCCCC--CHHHHHhhcCEEEec----CChh
Q 001947 222 DVKLLILNFGGQPAGWKLKEEYL--PSGWKCLVCGASDS-Q--LPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYG 290 (992)
Q Consensus 222 d~~~Vlvs~Gg~~~~~~ll~~l~--~~~~~~Vv~G~~~~-~--l~~nv~v~~f~~--~~p~lL~aaDlvIt~----~G~~ 290 (992)
+.+.++++.|.......++..+. .+++.+++.|.+.. . +.+||++.|+++ .++++|++||++|.. +-.+
T Consensus 220 ~~~~~i~~vGrl~~~Kg~~~~l~~~~~~~~l~ivG~g~~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~ 299 (406)
T 2hy7_A 220 AEGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPV 299 (406)
T ss_dssp CSSEEEEEECCTTBCHHHHHHHHHHCTTEEEEEESCSSCCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCT
T ss_pred CCCcEEEEEeccccccCHHHHHHHhCCCeEEEEEeCchHHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCch
Confidence 34357778888776433343331 35788888886532 2 578999999985 578999999999953 2336
Q ss_pred HHHHHH-------HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhhCCCCccCCCCHHHH
Q 001947 291 TVSEAL-------AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLKPCYEGGINGGEV 362 (992)
Q Consensus 291 Tv~Eal-------~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~-v~~~~~~~~~l~~al~~ll~~~~~~~~~~~G~~~ 362 (992)
++.||+ ++|+|+|+.+. +.....|.. +..++ ++.|.++|.++++++.........-+.
T Consensus 300 ~~lEAm~Kl~eYla~G~PVIas~~------------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~~~~~~~~sw~~ 365 (406)
T 2hy7_A 300 YLADSSMKLLQYDFFGLPAVCPNA------------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPRVRYRQCLNWSD 365 (406)
T ss_dssp THHHHCHHHHHHHHHTCCEEEEGG------------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCCCCCSCCCBHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEehh------------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcchhhhhcCCHHH
Confidence 799999 99999999863 444456877 77665 589999999999877532233344455
Q ss_pred HHHHHHHH
Q 001947 363 AAHILQET 370 (992)
Q Consensus 363 aA~~I~~~ 370 (992)
+++.++++
T Consensus 366 ~a~~~~~~ 373 (406)
T 2hy7_A 366 TTDRVLDP 373 (406)
T ss_dssp HHHHHHCG
T ss_pred HHHHHHHh
Confidence 55555443
No 70
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.57 E-value=1.4e-07 Score=108.08 Aligned_cols=131 Identities=12% Similarity=0.008 Sum_probs=85.0
Q ss_pred HHHHHhCCCC-CCcEEEEEcCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCC-------C----------CCCC--
Q 001947 212 EVRKELGIED-DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-------Q----------LPPN-- 263 (992)
Q Consensus 212 e~r~~l~~~~-d~~~Vlvs~Gg~~~~---~~ll~~---l~--~~~~~~Vv~G~~~~-------~----------l~~n-- 263 (992)
..++.+++++ +...++++.|+.... ..++++ +. .+++.+++.|.... . +.++
T Consensus 171 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~ 250 (413)
T 3oy2_A 171 DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFT 250 (413)
T ss_dssp THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccc
Confidence 4567778765 134567788876543 223333 21 25677777765432 1 3333
Q ss_pred -----eEEcCCCC--CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCc-------
Q 001947 264 -----FIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG------- 325 (992)
Q Consensus 264 -----v~v~~f~~--~~p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~------- 325 (992)
+.+.++++ .++++|+.||++|..+ ..+++.|||++|+|+|+.+.. .+.+.+.+...
T Consensus 251 ~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~------g~~e~v~~~~~~~i~~~~ 324 (413)
T 3oy2_A 251 HLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVG------GADDYFSGDCVYKIKPSA 324 (413)
T ss_dssp HHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCH------HHHHHSCTTTSEEECCCE
T ss_pred cccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCC------ChHHHHccCccccccccc
Confidence 66778876 6779999999999643 345899999999999998632 33444443332
Q ss_pred --------EE--EEecCCCChhhHHHHHHHHhhCCC
Q 001947 326 --------GV--EMIRRDLLTGHWKPYLERAISLKP 351 (992)
Q Consensus 326 --------Gi--~v~~~~~~~~~l~~al~~ll~~~~ 351 (992)
|. .+...+ ++.|.++| ++++++.
T Consensus 325 ~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 325 WISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp EEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHH
T ss_pred ccccccccCcceeeCCCC--HHHHHHHH-HHhcCHH
Confidence 55 666554 68999999 9987653
No 71
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.45 E-value=5.9e-07 Score=107.71 Aligned_cols=132 Identities=10% Similarity=-0.009 Sum_probs=87.9
Q ss_pred HHHHhCCCCCCcEEEEEcCCCCCh--hhHHHh---h--CCCCcEEEEeC-CCCCC-----------CC-CCeEEcCCCC-
Q 001947 213 VRKELGIEDDVKLLILNFGGQPAG--WKLKEE---Y--LPSGWKCLVCG-ASDSQ-----------LP-PNFIKLPKDA- 271 (992)
Q Consensus 213 ~r~~l~~~~d~~~Vlvs~Gg~~~~--~~ll~~---l--~~~~~~~Vv~G-~~~~~-----------l~-~nv~v~~f~~- 271 (992)
.++.++++++.. |+ ..|+.... ..+++. + ..+++++++.| ..... +. ++|++.|+++
T Consensus 367 ~r~~~~~~~~~~-v~-~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~ 444 (568)
T 2vsy_A 367 SRTQCGLPEQGV-VL-CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPH 444 (568)
T ss_dssp CTGGGTCCTTSC-EE-EECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCH
T ss_pred CccccCCCCCCE-EE-EeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCH
Confidence 456778866553 43 44554432 223332 2 13578888888 43310 34 7899999986
Q ss_pred -CHHHHHhhcCEEEec---CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 001947 272 -YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (992)
Q Consensus 272 -~~p~lL~aaDlvIt~---~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll 347 (992)
+++++|+.||++|.. ++.+++.|||++|+|+|+++...+.- ...+..+...|....+.. +++.|.+++.+++
T Consensus 445 ~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s-~~~~~~l~~~g~~e~v~~---~~~~la~~i~~l~ 520 (568)
T 2vsy_A 445 PQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAA-RVAGSLNHHLGLDEMNVA---DDAAFVAKAVALA 520 (568)
T ss_dssp HHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGG-SHHHHHHHHHTCGGGBCS---SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchH-HHHHHHHHHCCChhhhcC---CHHHHHHHHHHHh
Confidence 678999999999943 44578999999999999976432211 123556677777665543 4688999999998
Q ss_pred hCC
Q 001947 348 SLK 350 (992)
Q Consensus 348 ~~~ 350 (992)
+++
T Consensus 521 ~~~ 523 (568)
T 2vsy_A 521 SDP 523 (568)
T ss_dssp HCH
T ss_pred cCH
Confidence 765
No 72
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.43 E-value=5.3e-06 Score=102.70 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=107.5
Q ss_pred HHhCC--CCCCcEEEEEcCCCCCh--h-hHHHhh---C--CCCcEEEEeCCCCC-------------C---------CCC
Q 001947 215 KELGI--EDDVKLLILNFGGQPAG--W-KLKEEY---L--PSGWKCLVCGASDS-------------Q---------LPP 262 (992)
Q Consensus 215 ~~l~~--~~d~~~Vlvs~Gg~~~~--~-~ll~~l---~--~~~~~~Vv~G~~~~-------------~---------l~~ 262 (992)
+.+++ +++++ ++++.|..... . .+++++ . .+++.++++|.... . +.+
T Consensus 562 ~~lg~l~~~~~~-vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKKP-ILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTSC-EEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHhcccCCCCCe-EEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC
Confidence 34454 44454 56777877653 2 234432 1 13578888887651 0 357
Q ss_pred CeEEcCCCCC------HHHHHh-hcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 001947 263 NFIKLPKDAY------TPDFMA-ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (992)
Q Consensus 263 nv~v~~f~~~------~p~lL~-aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~ 331 (992)
+|.+.|++.+ ++.+|. ++|++|..+ -..++.|||+||+|+|+....+ ....+.+...|+.++.
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG------~~EiV~dg~~Gllv~p 714 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG------PAEIIVHGKSGFHIDP 714 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBT------HHHHCCBTTTBEEECT
T ss_pred cEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCC------hHHHHccCCcEEEeCC
Confidence 8999998753 345666 689999643 3368999999999999986433 3344666678999987
Q ss_pred CCCChhhHHHHHHHHh----hCCCCcc----------CCCCHHHHHHHHHHHHHc---cCccccCCCCccchhhHhhhhh
Q 001947 332 RDLLTGHWKPYLERAI----SLKPCYE----------GGINGGEVAAHILQETAI---GKNYASDKLSGARRLRDAIIFG 394 (992)
Q Consensus 332 ~~~~~~~l~~al~~ll----~~~~~~~----------~~~~G~~~aA~~I~~~~~---~~~~~s~~~~g~~~Lr~a~~~~ 394 (992)
.+ ++.|.++|.+++ .++..+. ...-.-+.+++.+.++.. --+..+... ....|..+++-
T Consensus 715 ~D--~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~--r~~~~ryle~~ 790 (816)
T 3s28_A 715 YH--GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLD--RLEARRYLEMF 790 (816)
T ss_dssp TS--HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhhhcchhh--hHHHHHHHHHH
Confidence 65 578888886665 6654221 122334444555544331 112223332 45666678888
Q ss_pred hhhcccC
Q 001947 395 YELQRVP 401 (992)
Q Consensus 395 ~~~q~~~ 401 (992)
|.+|+-|
T Consensus 791 ~~l~~~~ 797 (816)
T 3s28_A 791 YALKYRP 797 (816)
T ss_dssp HHHTHHH
T ss_pred HHHhhhh
Confidence 8888755
No 73
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.39 E-value=1.8e-06 Score=99.50 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=72.1
Q ss_pred CcEEEEeCCCCCC----CCCCeEEcCCCC--CHHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHH
Q 001947 247 GWKCLVCGASDSQ----LPPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFL 316 (992)
Q Consensus 247 ~~~~Vv~G~~~~~----l~~nv~v~~f~~--~~p~lL~aaDlvIt~~---G~-~Tv~Eal~~GvP~V~iP~~~~~EQ~~N 316 (992)
++.+++.|..... +..++++.|+++ .++++|++||++|..+ |+ +++.|||+||+|+|+ ...+..|-
T Consensus 276 ~~~l~ivG~~~~~~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g~~e~--- 351 (413)
T 2x0d_A 276 EWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYENKDL--- 351 (413)
T ss_dssp GCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBTTBCG---
T ss_pred ceEEEEEcCCchhhhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCCcchh---
Confidence 3788888875433 456888889874 5789999999999632 33 478999999999999 44444443
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 001947 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (992)
Q Consensus 317 A~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~ 351 (992)
++....|+.++..+ ++.|.++|.++++++.
T Consensus 352 ---v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~ 381 (413)
T 2x0d_A 352 ---SNWHSNIVSLEQLN--PENIAETLVELCMSFN 381 (413)
T ss_dssp ---GGTBTTEEEESSCS--HHHHHHHHHHHHHHTC
T ss_pred ---hhcCCCEEEeCCCC--HHHHHHHHHHHHcCHH
Confidence 45556798888766 5789999999998653
No 74
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.28 E-value=3.5e-05 Score=87.39 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCeEEcCCCCCHHHHHhhcCEEEec-----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 001947 262 PNFIKLPKDAYTPDFMAASDCMLGK-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (992)
Q Consensus 262 ~nv~v~~f~~~~p~lL~aaDlvIt~-----~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~ 336 (992)
.++.+.++.++++.+|+.||+++.. .|..++.|||++|+|+|+-|..+.. ......+.+.|+++.. ++ +
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~--~e~~~~~~~~G~l~~~--~d--~ 333 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKV--NDLKEFLEKEGAGFEV--KN--E 333 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTS--HHHHHHHHHTTCEEEC--CS--H
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccCh--HHHHHHHHHCCCEEEe--CC--H
Confidence 3577778788999999999996642 3457899999999999986533322 3345555567877655 33 5
Q ss_pred hhHHHHHHHHhhCCCC
Q 001947 337 GHWKPYLERAISLKPC 352 (992)
Q Consensus 337 ~~l~~al~~ll~~~~~ 352 (992)
+.|.++|.+++++ ..
T Consensus 334 ~~La~ai~~ll~d-~~ 348 (374)
T 2xci_A 334 TELVTKLTELLSV-KK 348 (374)
T ss_dssp HHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHHhH-HH
Confidence 7899999999987 54
No 75
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.16 E-value=1.2e-05 Score=80.72 Aligned_cols=124 Identities=14% Similarity=-0.017 Sum_probs=87.8
Q ss_pred CCCCCCcEEEEEcCCCCCh---hhHHHhhCC-CCcEEEEeCCCCC--C-----------CCCCeEEcCCCCC--HHHHHh
Q 001947 218 GIEDDVKLLILNFGGQPAG---WKLKEEYLP-SGWKCLVCGASDS--Q-----------LPPNFIKLPKDAY--TPDFMA 278 (992)
Q Consensus 218 ~~~~d~~~Vlvs~Gg~~~~---~~ll~~l~~-~~~~~Vv~G~~~~--~-----------l~~nv~v~~f~~~--~p~lL~ 278 (992)
.++.+++ ++++.|+.... ..+++.+.. +++.++++|.... . +++|+++.+++++ ++++|+
T Consensus 18 ~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 96 (177)
T 2f9f_A 18 KFKCYGD-FWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYS 96 (177)
T ss_dssp CCCCCCS-CEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHH
T ss_pred ccCCCCC-EEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHH
Confidence 3445555 45677777653 233443211 4677788876543 1 3569999999876 789999
Q ss_pred hcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 001947 279 ASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (992)
Q Consensus 279 aaDlvIt~----~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~~ 351 (992)
.||++|.. +...++.|||++|+|+|+.+. ..+...+++.+.|..+ ..+ .+.|.++|.++++++.
T Consensus 97 ~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~------~~~~e~i~~~~~g~~~-~~d--~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 97 RCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE------GGFKETVINEKTGYLV-NAD--VNEIIDAMKKVSKNPD 164 (177)
T ss_dssp HCSEEEECCSSCCSCHHHHHHHHTTCCEEEESS------HHHHHHCCBTTTEEEE-CSC--HHHHHHHHHHHHHCTT
T ss_pred hCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC------CCHHHHhcCCCccEEe-CCC--HHHHHHHHHHHHhCHH
Confidence 99999972 233589999999999999863 3455667777789888 444 6899999999998764
No 76
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=98.02 E-value=0.00014 Score=86.59 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=84.1
Q ss_pred HHHHHHhCCC--CCCcEEEEEcCCCCCh--h-hHHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEcCCCC
Q 001947 211 KEVRKELGIE--DDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (992)
Q Consensus 211 ~e~r~~l~~~--~d~~~Vlvs~Gg~~~~--~-~ll~---~l~~~~~~~Vv~G~~~~~-----------l~~nv~v~~f~~ 271 (992)
..+++.+|++ ++.| ++++.|..... . -+++ .+...++.+++.|.+... ++.++.+....+
T Consensus 313 ~~l~~~~gl~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (536)
T 3vue_A 313 EALQAEAGLPVDRKIP-LIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFN 391 (536)
T ss_dssp HHHHHHTTSCCCTTSC-EEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCC
T ss_pred HHHHHhcCCCCCCCCc-EEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEecc
Confidence 4566777876 3445 55667777653 2 2333 345567788888765421 477887766543
Q ss_pred --CHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--------CChh
Q 001947 272 --YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--------LLTG 337 (992)
Q Consensus 272 --~~p~lL~aaDlvIt~~---G-~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~--------~~~~ 337 (992)
.++.+|+.||++|..+ | ..+++|||++|+|+|+.... ...+.+.+...|..+.... .+++
T Consensus 392 ~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g------G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~ 465 (536)
T 3vue_A 392 APLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTG------GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVK 465 (536)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCT------HHHHHCCBTTTEEECCCCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCC------CchheeeCCCCccccccCCCceeEECCCCHH
Confidence 2457899999999753 2 25899999999999997643 3344466555666443221 1246
Q ss_pred hHHHHHHHHhh
Q 001947 338 HWKPYLERAIS 348 (992)
Q Consensus 338 ~l~~al~~ll~ 348 (992)
.|.++|++++.
T Consensus 466 ~la~ai~ral~ 476 (536)
T 3vue_A 466 KVAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888775
No 77
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.95 E-value=4.3e-05 Score=77.80 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=92.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch--h-hHHH---hhC--C--CCcEEEEeCCCC--C--C-------CCCCeEE-
Q 001947 210 RKEVRKELGIEDDVKLLILNFGGQP-AG--W-KLKE---EYL--P--SGWKCLVCGASD--S--Q-------LPPNFIK- 266 (992)
Q Consensus 210 r~e~r~~l~~~~d~~~Vlvs~Gg~~-~~--~-~ll~---~l~--~--~~~~~Vv~G~~~--~--~-------l~~nv~v- 266 (992)
+..+++.++++++ + ++++.|+.. .. . .+++ .+. . +++.++++|... . . ++ ++++
T Consensus 24 ~~~~r~~~~~~~~-~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~ 100 (200)
T 2bfw_A 24 KKSLLSKFGMDEG-V-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI 100 (200)
T ss_dssp HHHHHHHTTCCSC-E-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEE
T ss_pred HHHHHHHcCCCCC-C-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEE
Confidence 4578888998643 4 566778777 42 2 2333 232 2 467888888765 1 1 34 8999
Q ss_pred cCCCC--CHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 001947 267 LPKDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (992)
Q Consensus 267 ~~f~~--~~p~lL~aaDlvIt~~---G-~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~ 340 (992)
.++++ .++++|+.||++|... | .+++.|||++|+|+|+.+. ..+...+ ..+.|..++..+ ++.|.
T Consensus 101 ~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~------~~~~e~~-~~~~g~~~~~~~--~~~l~ 171 (200)
T 2bfw_A 101 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV------GGLRDII-TNETGILVKAGD--PGELA 171 (200)
T ss_dssp CSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC------HHHHHHC-CTTTCEEECTTC--HHHHH
T ss_pred eccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC------CChHHHc-CCCceEEecCCC--HHHHH
Confidence 99987 6789999999999754 2 3689999999999999753 2445556 667888887655 57899
Q ss_pred HHHHHHhh-CC
Q 001947 341 PYLERAIS-LK 350 (992)
Q Consensus 341 ~al~~ll~-~~ 350 (992)
++|.++++ ++
T Consensus 172 ~~i~~l~~~~~ 182 (200)
T 2bfw_A 172 NAILKALELSR 182 (200)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHhcCH
Confidence 99999987 54
No 78
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.27 E-value=0.00045 Score=67.91 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCh---hhHHHhh--CC--CCcEEEEeCCCCCC---------CCCCeEEcCCCC--CHHHHHhhcCEEEe
Q 001947 224 KLLILNFGGQPAG---WKLKEEY--LP--SGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDCMLG 285 (992)
Q Consensus 224 ~~Vlvs~Gg~~~~---~~ll~~l--~~--~~~~~Vv~G~~~~~---------l~~nv~v~~f~~--~~p~lL~aaDlvIt 285 (992)
|+++++.|+.... ..+++.+ +. +++.+++.|..... ++.++++ ++++ +++++|+.||++|.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 5678888887653 2334432 12 46788888875431 2347777 8874 46689999999997
Q ss_pred cC----ChhHHHHHHHcCC-cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 001947 286 KI----GYGTVSEALAYKL-PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 286 ~~----G~~Tv~Eal~~Gv-P~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~~ 350 (992)
.+ ...++.|||++|+ |+|+....+...+ .+.+.+. .+...+ ++.+.++|.++++++
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~-----~~~~~~~--~~~~~~--~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQ-----FALDERS--LFEPNN--AKDLSAKIDWWLENK 141 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG-----GCSSGGG--EECTTC--HHHHHHHHHHHHHCH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhh-----hccCCce--EEcCCC--HHHHHHHHHHHHhCH
Confidence 43 3469999999997 9999543222222 1222333 454443 688999999998754
No 79
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.14 E-value=0.0063 Score=67.58 Aligned_cols=255 Identities=10% Similarity=0.040 Sum_probs=124.9
Q ss_pred EEEEeccCCCcccHHHHHHHHHHHHHC--CCcEEEEeCCCCcccccccC-CCce-eeeeecccCCcccccccccChHHHH
Q 001947 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEIQ-SPRL-FIRKVLLDCGAVQADALTVDRLASL 92 (992)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~--GheV~~~~~~~~~~~~~~i~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 92 (992)
+|++ +.+.+.|-+.-+.++.++|+++ +.++++++... ....+. .|.+ .+.. .+.....
T Consensus 2 kILi-i~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~---~~~l~~~~p~i~~v~~--------------~~~~~~~ 63 (348)
T 1psw_A 2 KILV-IGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAW---CRPLLSRMPEVNEAIP--------------MPLGHGA 63 (348)
T ss_dssp EEEE-ECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGG---GHHHHTTCTTEEEEEE--------------C------
T ss_pred eEEE-EeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhcCCccCEEEE--------------ecCCccc
Confidence 4543 5667889998899999999987 88999987642 111111 1211 1111 0100000
Q ss_pred HHHHHHhhccHHHhHHHHHHHHHcCCCcEEEECC-CchHHHHHHHcCCcE-EEEec-CchhHHHHHHHhhhccchHHHHH
Q 001947 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRS-VCVTN-FSWDFIYAEYVMAAGHHHRSIVW 169 (992)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~~aA~~~gIP~-v~is~-~~~~~~~~~~~~~~~~~~~~i~~ 169 (992)
. .+. ...+..+.|++.+||+||.-+ ..-...++...++|. +.+.. ..|.. +..............++
T Consensus 64 ~--------~~~-~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (348)
T 1psw_A 64 L--------EIG-ERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGL-LNDVRVLDKEAWPLMVE 133 (348)
T ss_dssp ---------CHH-HHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEEECTTTCTTT-CTEEECCCTTTCCSHHH
T ss_pred c--------chH-HHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEeccCCCccccc-ccccccCCCCCCchHHH
Confidence 0 011 123345567888999999433 344556777889997 44422 11110 00000000000000122
Q ss_pred HHHhhccccceeeecCCCCCCCCCCceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCC-CCC-h-h------hHH
Q 001947 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG-QPA-G-W------KLK 240 (992)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg-~~~-~-~------~ll 240 (992)
+....... ++..... ..++...+.|.+. ......+++++.++++.++++|.+..|+ ... . | ++.
T Consensus 134 ~~~~l~~~----~g~~~~~--~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~ 206 (348)
T 1psw_A 134 RYIALAYD----KGIMRTA--QDLPQPLLWPQLQ-VSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELA 206 (348)
T ss_dssp HHHHTTSC----GGGCSSG--GGSCSSCCCCCCC-CCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHH
T ss_pred HHHHHHhh----ccccccc--ccCCcccCCceee-cCHHHHHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHH
Confidence 21111100 0000000 0000000111111 0111234566778877677888888887 322 2 2 222
Q ss_pred HhhCCCCcEEEEeCCCCCC---------CC----CCeE-EcCCCC--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEE
Q 001947 241 EEYLPSGWKCLVCGASDSQ---------LP----PNFI-KLPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (992)
Q Consensus 241 ~~l~~~~~~~Vv~G~~~~~---------l~----~nv~-v~~f~~--~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~ 304 (992)
+.|...++.++++|...+. ++ .++. +.+..+ .+..+|+.||++|+.-. +++..|.++|+|+|.
T Consensus 207 ~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds-g~~HlAaa~g~P~v~ 285 (348)
T 1psw_A 207 KQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-GLMHVAAALNRPLVA 285 (348)
T ss_dssp HHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-HHHHHHHHTTCCEEE
T ss_pred HHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEE
Confidence 3343347788888754431 22 2454 344332 33478899999999743 467779999999999
Q ss_pred EeC
Q 001947 305 VRR 307 (992)
Q Consensus 305 iP~ 307 (992)
+=.
T Consensus 286 lfg 288 (348)
T 1psw_A 286 LYG 288 (348)
T ss_dssp EES
T ss_pred EEC
Confidence 853
No 80
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.11 E-value=0.015 Score=65.04 Aligned_cols=248 Identities=15% Similarity=0.156 Sum_probs=123.2
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHC--CCcEEEEeCCCC-cccccccCCCce-eeeeecccCCcccccccccCh
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPD-FVFTSEIQSPRL-FIRKVLLDCGAVQADALTVDR 88 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--GheV~~~~~~~~-~~~~~~i~~~~~-~~~~~~~~~g~~~~~~~~~~~ 88 (992)
++++.| +...+.|-+.-+.++.++|+++ +.+|++++.... .++.. .|.+ ++.. .+.
T Consensus 8 ~~~iLv---i~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~---~p~vd~vi~--------------~~~ 67 (349)
T 3tov_A 8 YKRIVV---TFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEY---NPNIDELIV--------------VDK 67 (349)
T ss_dssp TCEEEE---ECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSS---CTTCSEEEE--------------ECC
T ss_pred CCEEEE---EecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhc---CCCccEEEE--------------eCc
Confidence 444444 4567899999999999999987 788998876531 11111 1111 0111 010
Q ss_pred HHHHHHHHHHhhccHHHhHHHHHHHHHcCCC-cEEEECC-CchHHHHHHHcCCcE-EEEecCchhHHHHHHHhh--h-cc
Q 001947 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKA-DLVVSDV-VPVACRAAADAGIRS-VCVTNFSWDFIYAEYVMA--A-GH 162 (992)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kP-DlVVsD~-~~~a~~aA~~~gIP~-v~is~~~~~~~~~~~~~~--~-~~ 162 (992)
......+.. +.+..+.|++.++ |+||.-+ ..-..+++...|+|. +.+....+...|....+. . .+
T Consensus 68 ~~~~~~~~~---------~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~riG~~~~~~~~~~~~~~~~~~~~~h 138 (349)
T 3tov_A 68 KGRHNSISG---------LNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITTGMSHFLFRPFMTKYTRLDRKTRH 138 (349)
T ss_dssp SSHHHHHHH---------HHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEEECCCTTTGGGCSEECCCCTTTSC
T ss_pred ccccccHHH---------HHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEEecCCCCccccccccccCCCCCcc
Confidence 000011111 1223445677899 9999655 444566778889996 444332211111111110 0 01
Q ss_pred chHHHHHHHHhhccccceeeecCCCCCCCCC-CceeecCcccccCCCChHHHHHHhCCCCCCcEEEEEcCCCCC-h-h--
Q 001947 163 HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAF-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA-G-W-- 237 (992)
Q Consensus 163 ~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~-~~v~~vp~~~~~~~~~r~e~r~~l~~~~d~~~Vlvs~Gg~~~-~-~-- 237 (992)
..+.... +.+.. +.+. .+.. ..+ .++.... ....++.+.+++++++++|.+..|+... . |
T Consensus 139 ~v~r~~~-ll~~l-------g~~~---~~~~~~~l-~~~~~~~---~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~ 203 (349)
T 3tov_A 139 AADMYIN-VLEQL-------GVTD---TSNSGLHI-EICEEWR---CQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPA 203 (349)
T ss_dssp HHHHHHH-HHHHT-------TCCC---CCCCCCCC-CCCHHHH---HHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCH
T ss_pred HHHHHHH-HHHHh-------CCCc---cCCCceee-eCCHHHH---HHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCH
Confidence 1111111 11111 1110 0000 000 0110000 0011233445777778899888886543 2 2
Q ss_pred ----hHHHhhCCCCcEEEEeCCCCCC---------CCCCeEE-cCCCC--CHHHHHhhcCEEEec-CChhHHHHHHHcCC
Q 001947 238 ----KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIK-LPKDA--YTPDFMAASDCMLGK-IGYGTVSEALAYKL 300 (992)
Q Consensus 238 ----~ll~~l~~~~~~~Vv~G~~~~~---------l~~nv~v-~~f~~--~~p~lL~aaDlvIt~-~G~~Tv~Eal~~Gv 300 (992)
++.+.+...++.+++.|...+. ++.++.. .+..+ .+..+|+.||++|+. +| ++.=|.++|+
T Consensus 204 ~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG--~~HlAaa~g~ 281 (349)
T 3tov_A 204 ERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITNDSG--PMHVGISQGV 281 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEESSH--HHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECCCC--HHHHHHhcCC
Confidence 2233343346777777654331 3344333 33322 234788999999997 44 4444999999
Q ss_pred cEEEEe
Q 001947 301 PFVFVR 306 (992)
Q Consensus 301 P~V~iP 306 (992)
|+|++=
T Consensus 282 P~v~lf 287 (349)
T 3tov_A 282 PIVALY 287 (349)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 999985
No 81
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.38 E-value=0.0097 Score=66.20 Aligned_cols=110 Identities=13% Similarity=-0.044 Sum_probs=77.5
Q ss_pred cEEEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC-CCCCeEEcCCCC--CHHHHHhhcCEEEec-CC----------h
Q 001947 224 KLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDA--YTPDFMAASDCMLGK-IG----------Y 289 (992)
Q Consensus 224 ~~Vlvs~Gg~~~~~~ll~~l~~~~~~~Vv~G~~~~~-l~~nv~v~~f~~--~~p~lL~aaDlvIt~-~G----------~ 289 (992)
+.+++..|+.+. .+++..+ .+++.+++.|.+... ++ ||+..|+.+ .+|.+|+.+|+.+.. .| .
T Consensus 178 ~~~i~yaG~l~k-~~~L~~l-~~~~~f~ivG~G~~~~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P 254 (339)
T 3rhz_A 178 KREIHFPGNPER-FSFVKEW-KYDIPLKVYTWQNVELPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCS 254 (339)
T ss_dssp EEEEEECSCTTT-CGGGGGC-CCSSCEEEEESCCCCCCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCC
T ss_pred CcEEEEeCCcch-hhHHHhC-CCCCeEEEEeCCcccCcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcCh
Confidence 457788888875 2445454 367888888877654 66 999999885 467888766655542 33 2
Q ss_pred hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001947 290 GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (992)
Q Consensus 290 ~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~l 346 (992)
+.+.|+|++|+|+|+.+.. .+++.+++.++|+.++. .+++.+.|.++
T Consensus 255 ~Kl~eymA~G~PVI~~~~~------~~~~~v~~~~~G~~~~~----~~e~~~~i~~l 301 (339)
T 3rhz_A 255 YKLGSFLAAGIPVIVQEGI------ANQELIENNGLGWIVKD----VEEAIMKVKNV 301 (339)
T ss_dssp HHHHHHHHHTCCEEEETTC------TTTHHHHHHTCEEEESS----HHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEccCh------hHHHHHHhCCeEEEeCC----HHHHHHHHHHh
Confidence 4689999999999987632 34567889999999862 35566666654
No 82
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=90.00 E-value=0.27 Score=58.38 Aligned_cols=86 Identities=9% Similarity=0.024 Sum_probs=56.7
Q ss_pred CCCeEEcCCCCCH--HHHHhhcCEEEec---CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE-EEecCCC
Q 001947 261 PPNFIKLPKDAYT--PDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV-EMIRRDL 334 (992)
Q Consensus 261 ~~nv~v~~f~~~~--p~lL~aaDlvIt~---~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi-~v~~~~~ 334 (992)
.+.+.+.+..+.. ...+..||+++-. +|.+|++|||++|+|+|+.+...+... .-+..+...|+.. .+.. +
T Consensus 498 ~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asR-vgaSlL~~~GLpE~LIA~-d- 574 (631)
T 3q3e_A 498 GDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIAN-T- 574 (631)
T ss_dssp GGGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHH-HHHHHHHHTTCCGGGEES-S-
T ss_pred CccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHH-hHHHHHHhcCCCcceecC-C-
Confidence 4677788776532 2556899999953 577999999999999999985433322 3456677888864 2332 1
Q ss_pred ChhhHHHHHHHHhhCC
Q 001947 335 LTGHWKPYLERAISLK 350 (992)
Q Consensus 335 ~~~~l~~al~~ll~~~ 350 (992)
.+...+..-++.+++
T Consensus 575 -~eeYv~~Av~La~D~ 589 (631)
T 3q3e_A 575 -VDEYVERAVRLAENH 589 (631)
T ss_dssp -HHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHhCCH
Confidence 344445555555544
No 83
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=89.15 E-value=0.44 Score=55.44 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=56.1
Q ss_pred eEE-cCCCC--CHHHHHhhcCEEEecC---Chh-HHHHHHHcCC-----cEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 001947 264 FIK-LPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYKL-----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (992)
Q Consensus 264 v~v-~~f~~--~~p~lL~aaDlvIt~~---G~~-Tv~Eal~~Gv-----P~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~ 331 (992)
++. .++++ .++.+|++||++|..+ |+| ++.|||+||+ |+|+....+..++ + ..|+.+++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~------l---~~g~lv~p 403 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE------L---TSALIVNP 403 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT------C---TTSEEECT
T ss_pred EEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHH------h---CCeEEECC
Confidence 553 45553 5678999999999755 555 8999999998 7777665555555 2 25678887
Q ss_pred CCCChhhHHHHHHHHhhCC
Q 001947 332 RDLLTGHWKPYLERAISLK 350 (992)
Q Consensus 332 ~~~~~~~l~~al~~ll~~~ 350 (992)
.+ ++.+.++|.++++++
T Consensus 404 ~d--~~~lA~ai~~lL~~~ 420 (482)
T 1uqt_A 404 YD--RDEVAAALDRALTMS 420 (482)
T ss_dssp TC--HHHHHHHHHHHHTCC
T ss_pred CC--HHHHHHHHHHHHcCC
Confidence 66 578999999999764
No 84
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=88.11 E-value=0.43 Score=57.15 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=45.6
Q ss_pred CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-------CcEEEEec-CCCChhhH
Q 001947 272 YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-------QGGVEMIR-RDLLTGHW 339 (992)
Q Consensus 272 ~~p~lL~aaDlvIt~~----G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~-------G~Gi~v~~-~~~~~~~l 339 (992)
+++++|+.||++|..+ -..+++||++||+|+|+....+..| .+.+. +.|+.+.. +...++.+
T Consensus 511 d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d------~V~dg~~~~~~~~tG~lV~~rd~~d~ee~ 584 (725)
T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGS------YMEDLIETNQAKDYGIYIVDRRFKAPDES 584 (725)
T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHH------HHHTTSCHHHHHHTTEEEECCSSSCHHHH
T ss_pred HHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhh------hhhccccccCCCCceEEEeCCCCCCHHHH
Confidence 3578999999999754 2369999999999999987654332 23321 35766643 33334444
Q ss_pred HHHHHHHh
Q 001947 340 KPYLERAI 347 (992)
Q Consensus 340 ~~al~~ll 347 (992)
.++|.+++
T Consensus 585 aeaLa~aL 592 (725)
T 3nb0_A 585 VEQLVDYM 592 (725)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555444
No 85
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=87.99 E-value=2 Score=45.21 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
|+|++| ...-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 1 Mp~ILl---TNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~ 36 (251)
T 2wqk_A 1 MPTFLL---VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp -CEEEE---ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CCEEEE---EcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeC
Confidence 677777 666663 3333458899999988 58877554
No 86
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=86.29 E-value=0.9 Score=52.71 Aligned_cols=79 Identities=13% Similarity=-0.017 Sum_probs=59.0
Q ss_pred CeEEcCCCC--CHHHHHhhcCEEEecC---Chh-HHHHHHHcC---CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC
Q 001947 263 NFIKLPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYK---LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD 333 (992)
Q Consensus 263 nv~v~~f~~--~~p~lL~aaDlvIt~~---G~~-Tv~Eal~~G---vP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~ 333 (992)
.|++.++++ .++.+|++||++|..+ |+| +..|+++|| .|+|+-...+..++ |. ..|+.+++.+
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~------l~--~~allVnP~D 424 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEV------LG--EYCRSVNPFD 424 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHH------HG--GGSEEECTTB
T ss_pred CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHH------hC--CCEEEECCCC
Confidence 477666653 3568999999999765 777 678999996 78887765554444 32 2478898876
Q ss_pred CChhhHHHHHHHHhhCCC
Q 001947 334 LLTGHWKPYLERAISLKP 351 (992)
Q Consensus 334 ~~~~~l~~al~~ll~~~~ 351 (992)
.+.++++|.++|+++.
T Consensus 425 --~~~lA~AI~~aL~m~~ 440 (496)
T 3t5t_A 425 --LVEQAEAISAALAAGP 440 (496)
T ss_dssp --HHHHHHHHHHHHHCCH
T ss_pred --HHHHHHHHHHHHcCCH
Confidence 5799999999998763
No 87
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=84.26 E-value=1.8 Score=46.99 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCCCCh--h------hHHHhhCCCCcEEEEe-CCCCCC--------CCCCeEEcCCCC--CHHHHHhhcC
Q 001947 221 DDVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVC-GASDSQ--------LPPNFIKLPKDA--YTPDFMAASD 281 (992)
Q Consensus 221 ~d~~~Vlvs~Gg~~~~--~------~ll~~l~~~~~~~Vv~-G~~~~~--------l~~nv~v~~f~~--~~p~lL~aaD 281 (992)
.++++|.+..|+.... | ++.+.|...++.++++ |...+. ..+++.+.+..+ .+..+|+.||
T Consensus 176 ~~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~ 255 (326)
T 2gt1_A 176 DAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAK 255 (326)
T ss_dssp TTTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCS
T ss_pred cCCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCC
Confidence 3567788877765432 2 2333454457777776 532211 123555555332 2347889999
Q ss_pred EEEec-CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEe-----cCCCChhhHHHHHHHHhhC
Q 001947 282 CMLGK-IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMI-----RRDLLTGHWKPYLERAISL 349 (992)
Q Consensus 282 lvIt~-~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G-~Gi~v~-----~~~~~~~~l~~al~~ll~~ 349 (992)
++||. +| ++.=|.++|+|+|++=.+...+. ..=.+ ....+. .++++++.+.+++.++++.
T Consensus 256 l~I~~DSG--~~HlAaa~g~P~v~lfg~t~p~~------~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 256 FVVSVDTG--LSHLTAALDRPNITVYGPTDPGL------IGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEEESSH--HHHHHHHTTCCEEEEESSSCHHH------HCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEEecCCc--HHHHHHHcCCCEEEEECCCChhh------cCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 99997 55 44447789999999843221111 10011 112221 2467778888888887754
No 88
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=82.80 E-value=4.4 Score=49.50 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCC-----------C--h--hhHHHhhCCCCcEEEEeCCCC----C---CCCCCeEEcC
Q 001947 211 KEVRKELGIEDDVKLLILNFGGQP-----------A--G--WKLKEEYLPSGWKCLVCGASD----S---QLPPNFIKLP 268 (992)
Q Consensus 211 ~e~r~~l~~~~d~~~Vlvs~Gg~~-----------~--~--~~ll~~l~~~~~~~Vv~G~~~----~---~l~~nv~v~~ 268 (992)
.++++.++++.++++||.+- +.- . . .+.+...+..++.+++-.... . ..+..+..+.
T Consensus 526 ~~~~~~~~~~~~kk~ILyaP-T~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~Hp~~~~~~~~~~~~~~~~~~~ 604 (729)
T 3l7i_A 526 DEIRTHLNLPSDKKVIMYAP-TWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMHYLISNALDLSGYENFAIDVS 604 (729)
T ss_dssp HHHHHHTTCCSSCEEEEECC-CCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECCCHHHHTTCCCTTCTTTEEECT
T ss_pred HHHHHHhCCCCCCeEEEEee-eeeCCccccccccccchhhHHHHHHHHcCCCeEEEEecCcchhccccccccCCcEEeCC
Confidence 45778899988888877753 111 0 0 111222224567666543210 0 1233444343
Q ss_pred CCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC-------CChhhHHH
Q 001947 269 KDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD-------LLTGHWKP 341 (992)
Q Consensus 269 f~~~~p~lL~aaDlvIt~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~-------~~~~~l~~ 341 (992)
--.++.++|..||++||--. +.+.|.+.+++|+|+.... .|+..+ . --|...+..+ -+.++|.+
T Consensus 605 ~~~di~~ll~~aD~lITDyS-Sv~fD~~~l~kPiif~~~D--~~~Y~~-----~-~rg~y~d~~~~~pg~~~~~~~eL~~ 675 (729)
T 3l7i_A 605 NYNDVSELFLISDCLITDYS-SVMFDYGILKRPQFFFAYD--IDKYDK-----G-LRGFYMNYMEDLPGPIYTEPYGLAK 675 (729)
T ss_dssp TCSCHHHHHHTCSEEEESSC-THHHHHGGGCCCEEEECTT--TTTTTS-----S-CCSBSSCTTSSSSSCEESSHHHHHH
T ss_pred CCcCHHHHHHHhCEEEeech-HHHHhHHhhCCCEEEecCC--HHHHhh-----c-cCCcccChhHhCCCCeECCHHHHHH
Confidence 33467799999999999765 6899999999999999743 233111 0 0122222111 12346666
Q ss_pred HHHHHhhCCCCc-------------cCCCCHHHHHHHHHHHHHc
Q 001947 342 YLERAISLKPCY-------------EGGINGGEVAAHILQETAI 372 (992)
Q Consensus 342 al~~ll~~~~~~-------------~~~~~G~~~aA~~I~~~~~ 372 (992)
+|.+....+..+ ..+++.++++++.|.+...
T Consensus 676 ~i~~~~~~~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~ 719 (729)
T 3l7i_A 676 ELKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIK 719 (729)
T ss_dssp HHTTHHHHHHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred HHhhhhccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCc
Confidence 666554311110 1467889999999887654
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=72.67 E-value=3 Score=50.94 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCeEEcCCCCCHHHHH---hhcCEEEe---cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCC
Q 001947 261 PPNFIKLPKDAYTPDFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334 (992)
Q Consensus 261 ~~nv~v~~f~~~~p~lL---~aaDlvIt---~~G~~Tv~Eal~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~ 334 (992)
++.+.+.+..+ ..++| ..+|+++- -+|.+|++|||.+|||+|.++-..+.- ..-+..|...|+...+.
T Consensus 579 ~~r~~f~~~~~-~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~s-R~~~s~l~~~gl~e~ia---- 652 (723)
T 4gyw_A 579 QNRIIFSPVAP-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLAS-RVAASQLTCLGCLELIA---- 652 (723)
T ss_dssp GGGEEEEECCC-HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGG-THHHHHHHHHTCGGGBC----
T ss_pred cCeEEECCCCC-HHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccH-hHHHHHHHHcCCccccc----
Confidence 34577776654 24444 67999995 467799999999999999998444333 34567788888764432
Q ss_pred ChhhHHHHHHHHh
Q 001947 335 LTGHWKPYLERAI 347 (992)
Q Consensus 335 ~~~~l~~al~~ll 347 (992)
....++++..+
T Consensus 653 --~~~~~Y~~~a~ 663 (723)
T 4gyw_A 653 --KNRQEYEDIAV 663 (723)
T ss_dssp --SSHHHHHHHHH
T ss_pred --CCHHHHHHHHH
Confidence 33445555544
No 90
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=71.19 E-value=7.7 Score=40.73 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 11 ASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 11 ~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
..+++|+||. ...-|. |..=..+|+++|++ +|+|+++.+.
T Consensus 7 ~~~~~m~ILl-TNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~ 46 (261)
T 3ty2_A 7 TATPKLRLLL-SNDDGV-YAKGLAILAKTLAD-LGEVDVVAPD 46 (261)
T ss_dssp ----CCEEEE-ECSSCT-TCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred ccCCCCeEEE-EcCCCC-CCHHHHHHHHHHHh-cCCEEEEecC
Confidence 3445677754 566664 44445688999987 7999998664
No 91
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=69.31 E-value=21 Score=37.30 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=23.8
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
|+||. ...-|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 36 (251)
T 2phj_A 2 PTFLL-VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CEEEE-ECCCCC-CCHHHHHHHHHHHhcC-CEEEEecC
Confidence 34532 566653 4444568999999987 99988664
No 92
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=66.24 E-value=24 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
+|+++. ++..-.|.|=.+-+.++|..|.++|++|.++...+
T Consensus 24 ~~~~i~--v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYI--MFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEE--EEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEE--EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 454443 45666779999999999999999999999998765
No 93
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.31 E-value=47 Score=35.85 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.1
Q ss_pred EEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
+|+++..-.|.|=.+-+.++|.+|.++|++|.++...+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34446667789999999999999999999999997765
No 94
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=51.98 E-value=57 Score=34.05 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=23.1
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
|+||. ...-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~ 36 (254)
T 2v4n_A 2 MRILL-SNDDGV-HAPGIQTLAKALREFA-DVQVVAPD 36 (254)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeC
Confidence 34533 566654 4444568999998875 99988664
No 95
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=48.31 E-value=62 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCcEEEE-CC--CchHHHHHHHcCCcEEEEec
Q 001947 117 IKADLVVS-DV--VPVACRAAADAGIRSVCVTN 146 (992)
Q Consensus 117 ~kPDlVVs-D~--~~~a~~aA~~~gIP~v~is~ 146 (992)
..||+||. |. ...+..=|..+|||+|++.|
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 189 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCC
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEec
Confidence 37999985 54 56677788999999999843
No 96
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=47.87 E-value=40 Score=37.38 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=29.6
Q ss_pred EEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
|+++..-.|.|-.+-+..+|..|.++|..|.++.. +
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~ 39 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-A 39 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-S
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-C
Confidence 43455555699999999999999999999999876 5
No 97
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=46.00 E-value=73 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=20.8
Q ss_pred ccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
...-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 6 TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 35 (247)
T 1j9j_A 6 TNDDGI-QSKGIIVLAELLSEEH-EVFVVAPD 35 (247)
T ss_dssp ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 455553 3333568999999887 89988654
No 98
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=44.75 E-value=38 Score=36.95 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=32.6
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
.+|+++..-.|.|=.+-+.++|..|.++|.+|.++...+
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 344456667779999999999999999999999997764
No 99
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=42.53 E-value=41 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHhhcCEEEe-cCChhHHHHHH---------HcCCcEEEEeCCCCCCh
Q 001947 276 FMAASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEE 313 (992)
Q Consensus 276 lL~aaDlvIt-~~G~~Tv~Eal---------~~GvP~V~iP~~~~~EQ 313 (992)
++..||+||. .+|+||+-|.. .+++|++++...++.+.
T Consensus 105 m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~ 152 (189)
T 3sbx_A 105 MEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDG 152 (189)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHH
T ss_pred HHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchH
Confidence 4578999997 56788877764 25999999987666654
No 100
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=40.59 E-value=2.9 Score=47.64 Aligned_cols=47 Identities=13% Similarity=-0.154 Sum_probs=31.9
Q ss_pred cCCCcccccccccccccccccCCCCCCCCCCCCCCCcc--ccccceeecCCCC
Q 001947 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVK--FTEDFEILHGDCQ 450 (992)
Q Consensus 400 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 450 (992)
..+|.+..|.-++|+...+..+.+.|.+. +++|| |+||.|||..||+
T Consensus 378 ~~~sli~~p~~~~h~~~~~~~~~~~g~~~----~liRlsvG~E~~~dl~~dl~ 426 (430)
T 3ri6_A 378 DNKSLILSPYHVIYALNSHEERLKLEISP----AMMRLSVGIEEIEDLKEDIL 426 (430)
T ss_dssp CSSCEEECTGGGC---------CGGGSCT----TEEEEECCSSCHHHHHHHHH
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHH
Confidence 34557889999999988777776677777 99999 8999999999985
No 101
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=39.67 E-value=32 Score=35.09 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHhhcCEEEe-cCChhHHHHHH---------HcCCcEEEEeCCCCCCh
Q 001947 276 FMAASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEE 313 (992)
Q Consensus 276 lL~aaDlvIt-~~G~~Tv~Eal---------~~GvP~V~iP~~~~~EQ 313 (992)
++..||+||. .+|+||+-|.. .+++|++++...++.+.
T Consensus 102 ~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~ 149 (216)
T 1ydh_A 102 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNN 149 (216)
T ss_dssp HHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHH
T ss_pred HHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchH
Confidence 4467999987 56788977666 47999999986555543
No 102
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=38.73 E-value=19 Score=34.51 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=41.7
Q ss_pred HHHhhcCEEEec---CChhHHHH---HHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 001947 275 DFMAASDCMLGK---IGYGTVSE---ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (992)
Q Consensus 275 ~lL~aaDlvIt~---~G~~Tv~E---al~~GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~ 348 (992)
+.|..||++|.- ...||.+| |.+.|+|++++-.+.. +. ....++.-..-|-.+...+...+++...|.+.+.
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~-~~-~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQS-GR-VLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGG-SC-CCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCc-cc-hhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 678899999974 46789988 5889999999864321 11 1233444332111111111112566777776654
No 103
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=38.56 E-value=35 Score=33.11 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.8
Q ss_pred HHHhhcCEEEec---CChhHHHH---HHHcCCcEEEEeCC
Q 001947 275 DFMAASDCMLGK---IGYGTVSE---ALAYKLPFVFVRRD 308 (992)
Q Consensus 275 ~lL~aaDlvIt~---~G~~Tv~E---al~~GvP~V~iP~~ 308 (992)
.+|..||+||.- ...||.+| |.+.|+|++++-..
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~ 112 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRP 112 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcC
Confidence 678999999864 46789999 57789999998643
No 104
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=36.02 E-value=35 Score=33.24 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.4
Q ss_pred HHHhhcCEEEe-----cCChhHHHH---HHHcCCcEEEEe
Q 001947 275 DFMAASDCMLG-----KIGYGTVSE---ALAYKLPFVFVR 306 (992)
Q Consensus 275 ~lL~aaDlvIt-----~~G~~Tv~E---al~~GvP~V~iP 306 (992)
..|..||++|. ..-.||.+| |.+.|+|++++.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 57789999998 567789998 678999999995
No 105
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.70 E-value=1.9e+02 Score=28.77 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=29.0
Q ss_pred ccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
.+|.|.|-.+-++.+|-+...+|..|.|+...+
T Consensus 34 ~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 34 FTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp EESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 478999999999999999999999999985443
No 106
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=34.60 E-value=75 Score=34.76 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.5
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHH--HCCCcEEEEeCCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLI--SAGHDVHVVTGAP 54 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~--~~GheV~~~~~~~ 54 (992)
.+|+++..-.|.|-.+-+..+|..|. ++|++|.++...+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 34555666778999999999999999 8999999997764
No 107
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=34.60 E-value=40 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=27.9
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHC-CC-cEEEEe
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA-GH-DVHVVT 51 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh-eV~~~~ 51 (992)
|+++.|++.....|.-....++.+|..+.+. || +|.++-
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff 41 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFL 41 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEE
Confidence 5566664433333566788899999999999 99 997653
No 108
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=33.27 E-value=41 Score=33.75 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHhhcCEEEe-cCChhHHHHH---HH------cCCcEEEEeCCCCCCh
Q 001947 276 FMAASDCMLG-KIGYGTVSEA---LA------YKLPFVFVRRDYFNEE 313 (992)
Q Consensus 276 lL~aaDlvIt-~~G~~Tv~Ea---l~------~GvP~V~iP~~~~~EQ 313 (992)
++..||++|. .+|+||+-|. +. +++|++++...++.+.
T Consensus 114 m~~~sda~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~ 161 (199)
T 3qua_A 114 MEHRSDAFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDG 161 (199)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHH
T ss_pred HHHhcCccEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcCCccchH
Confidence 4478999997 5678887665 44 5999999986556543
No 109
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=32.09 E-value=43 Score=31.09 Aligned_cols=40 Identities=5% Similarity=-0.057 Sum_probs=28.4
Q ss_pred CCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEe
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~ 51 (992)
.|+++.|.+....++......++.+|......||+|.++-
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf 53 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFF 53 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3556666433222267788899999999999999998653
No 110
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=31.39 E-value=92 Score=31.87 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHC--CCcEE-EEeC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVH-VVTG 52 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~--GheV~-~~~~ 52 (992)
++|+|+++|.| +. +.++.++|.+. +++|. ++|.
T Consensus 23 ~rI~~l~SG~g--~~--~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 23 IRIGVLISGSG--TN--LQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp EEEEEEESSCC--HH--HHHHHHHHHTTSSSEEEEEEEES
T ss_pred cEEEEEEeCCc--HH--HHHHHHHHHhCCCCCeEEEEEcC
Confidence 56766766554 43 67788888876 56775 4454
No 111
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=31.07 E-value=33 Score=33.74 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=27.7
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
.+|++.++ |......+..+.+.|++.|++|+++...
T Consensus 6 k~IllgvT--Gs~aa~k~~~ll~~L~~~g~~V~vv~T~ 41 (175)
T 3qjg_A 6 ENVLICLC--GSVNSINISHYIIELKSKFDEVNVIAST 41 (175)
T ss_dssp CEEEEEEC--SSGGGGGHHHHHHHHTTTCSEEEEEECT
T ss_pred CEEEEEEe--CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 46656666 4456667999999999999999977554
No 112
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=30.91 E-value=60 Score=29.41 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=28.2
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEE
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~ 50 (992)
|+++.|++..+.+|.-...-++.+|.++...+|+|.++
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vf 38 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVF 38 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEE
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 77777755544455445677899999999999999755
No 113
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=30.36 E-value=50 Score=31.99 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.9
Q ss_pred HHHhhcCEEEec-----CChhHHHH---HHHcCCcEEEEeC
Q 001947 275 DFMAASDCMLGK-----IGYGTVSE---ALAYKLPFVFVRR 307 (992)
Q Consensus 275 ~lL~aaDlvIt~-----~G~~Tv~E---al~~GvP~V~iP~ 307 (992)
..|..||++|.- ...||.+| |.+.|+|++++-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~ 105 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYT 105 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEc
Confidence 567899999973 24789999 5889999999863
No 114
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=29.96 E-value=50 Score=35.00 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=26.8
Q ss_pred CCccEEEEEeccCCCcccHHHHH--HHHHHHHHCCCcEEEEeC
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVV--EVVRNLISAGHDVHVVTG 52 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~l--aLA~~L~~~GheV~~~~~ 52 (992)
.|+.|+||++...+-....+.++ .+++.|++.||+|.++-.
T Consensus 19 ~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ---CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred hhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 36666776665555445555554 678889999999998854
No 115
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=29.35 E-value=74 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=26.9
Q ss_pred HHhhcCEEEe-cCChhHHH---HHHH------cCCcEEEEeCCCCCC
Q 001947 276 FMAASDCMLG-KIGYGTVS---EALA------YKLPFVFVRRDYFNE 312 (992)
Q Consensus 276 lL~aaDlvIt-~~G~~Tv~---Eal~------~GvP~V~iP~~~~~E 312 (992)
+...||++|. .+|+||+- |++. +++|++++...++.+
T Consensus 94 ~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~ 140 (191)
T 1t35_A 94 MSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFE 140 (191)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTH
T ss_pred HHHHCCEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccc
Confidence 4467999997 56778854 5664 889999998645554
No 116
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=28.66 E-value=81 Score=32.79 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=39.5
Q ss_pred hcCEEEecCChhHHHHHHHc---CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 001947 279 ASDCMLGKIGYGTVSEALAY---KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (992)
Q Consensus 279 aaDlvIt~~G~~Tv~Eal~~---GvP~V~iP~~~~~EQ~~NA~~le~~G~Gi~v~~~~~~~~~l~~al~~ll~~ 349 (992)
.+|++|+-||-||+.+++.. ++|++.++. +. .|.- . ++.++.+.++++++++.
T Consensus 41 ~~D~vv~~GGDGTll~~a~~~~~~~PilGIn~-G~------------~Gfl--~---~~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 41 TADLIVVVGGDGTVLKAAKKAADGTPMVGFKA-GR------------LGFL--T---SYTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CCSEEEEEECHHHHHHHHTTBCTTCEEEEEES-SS------------CCSS--C---CBCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEeCcHHHHHHHHHhCCCCCEEEEEC-CC------------CCcc--C---cCCHHHHHHHHHHHHcC
Confidence 58999999999999999887 899999983 21 1221 1 23467788888888754
No 117
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=28.49 E-value=56 Score=30.53 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=27.9
Q ss_pred CCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEE
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~ 50 (992)
.|+++.|++.-+.+|.-....++.+|.++...||+|.++
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vf 42 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVL 42 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEE
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 476666655444454446777899999999999999765
No 118
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=28.48 E-value=67 Score=32.84 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHHcCCCcEEEECC---CchHHHHHHH----cCCcEEEEec
Q 001947 112 EWLNSIKADLVVSDV---VPVACRAAAD----AGIRSVCVTN 146 (992)
Q Consensus 112 ~~L~~~kPDlVVsD~---~~~a~~aA~~----~gIP~v~is~ 146 (992)
++-++|+||+||.-. ...+...|+. .|+|+|.+++
T Consensus 58 ~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 58 DIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcC
Confidence 334899999999654 3345555543 5999999976
No 119
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=28.18 E-value=65 Score=29.58 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEEEeccC--CCcccHHHHHHHHHHHHHCCCcE-EEE
Q 001947 17 VFAYYVTG--HGFGHATRVVEVVRNLISAGHDV-HVV 50 (992)
Q Consensus 17 ~Il~~v~g--~G~GHv~r~laLA~~L~~~GheV-~~~ 50 (992)
++++.+++ .|.-....++.+|.++.+.||+| .++
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vf 38 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVF 38 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEE
Confidence 34445555 44456888999999999999999 655
No 120
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.07 E-value=1.1e+02 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEEeccCCCcccHHHHHHHHHHHHHCCC--cEE-EEeCC
Q 001947 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGH--DVH-VVTGA 53 (992)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh--eV~-~~~~~ 53 (992)
++|+|+++|.| + -+.++.++|.+.++ +|. ++|..
T Consensus 2 ~rI~vl~SG~g--~--~~~~~l~~l~~~~~~~~i~~Vvs~~ 38 (216)
T 2ywr_A 2 LKIGVLVSGRG--S--NLQAIIDAIESGKVNASIELVISDN 38 (216)
T ss_dssp EEEEEEECSCC--H--HHHHHHHHHHTTSSCEEEEEEEESC
T ss_pred CEEEEEEeCCc--H--HHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 35655666554 3 36788889988777 665 44543
No 121
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=27.84 E-value=51 Score=31.84 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=27.0
Q ss_pred HHHhhcCEEEec--------CChhHHHH---HHHcCCcEEEEeC
Q 001947 275 DFMAASDCMLGK--------IGYGTVSE---ALAYKLPFVFVRR 307 (992)
Q Consensus 275 ~lL~aaDlvIt~--------~G~~Tv~E---al~~GvP~V~iP~ 307 (992)
..|..||+||.- .-.||.+| |.+.|+|++++..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 678899999975 34679999 5789999999863
No 122
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=27.66 E-value=55 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=29.1
Q ss_pred ccEEEEEeccCCCcccHH-HHHHHHHHHHHCCCcEEEEeCC
Q 001947 14 KHLVFAYYVTGHGFGHAT-RVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~-r~laLA~~L~~~GheV~~~~~~ 53 (992)
+..+|++.++| .+... .+..+.+.|+++|++|+++.+.
T Consensus 6 ~~k~I~lgiTG--s~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 6 AGKHVGFGLTG--SHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TTCEEEEECCS--CGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEEEC--hHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 34566667765 36667 8999999999999999987544
No 123
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.77 E-value=1.9e+02 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHHHHcCCCcEEEECCCchHHHHHHHcCCcEEEE
Q 001947 111 VEWLNSIKADLVVSDVVPVACRAAADAGIRSVCV 144 (992)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~~a~~aA~~~gIP~v~i 144 (992)
.+++++.+||++|++.. ...+|+++|||.+.+
T Consensus 368 e~~i~~~~pDllig~~~--~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 368 EHAARAGQAQLVIGNSH--ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHTCSEEEECTT--HHHHHHHTTCCEEEC
T ss_pred HHHHHhcCCCEEEEChh--HHHHHHHcCCCEEEe
Confidence 45678889999999865 456788999999876
No 124
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=24.74 E-value=63 Score=31.05 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHhhcCEEEec-----CChhHHHH---HHHcCCcEEEEeC
Q 001947 275 DFMAASDCMLGK-----IGYGTVSE---ALAYKLPFVFVRR 307 (992)
Q Consensus 275 ~lL~aaDlvIt~-----~G~~Tv~E---al~~GvP~V~iP~ 307 (992)
..|..||++|.- .-.||.+| |.+.|+|++++-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 567899999865 35689999 6889999999964
No 125
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.59 E-value=72 Score=32.17 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCChhhHHHhhCCCC-cEEEEeCCCCCC----CCCCeEEc--CCCC--CHHHHHhhcCEEEecCCh
Q 001947 223 VKLLILNFGGQPAGWKLKEEYLPSG-WKCLVCGASDSQ----LPPNFIKL--PKDA--YTPDFMAASDCMLGKIGY 289 (992)
Q Consensus 223 ~~~Vlvs~Gg~~~~~~ll~~l~~~~-~~~Vv~G~~~~~----l~~nv~v~--~f~~--~~p~lL~aaDlvIt~~G~ 289 (992)
.+.|+|++|+.+.+..+.+.|+..+ +.+++...+... ...++.++ +..+ .+..++..+|++|..+|.
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4578899877666667888887777 776666544322 34466543 2222 233567789999987774
No 126
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=24.59 E-value=47 Score=30.43 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCcEEEECCCch---HHHHH---HHcCCcEEEEecC
Q 001947 108 KDEVEWLNSIKADLVVSDVVPV---ACRAA---ADAGIRSVCVTNF 147 (992)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~~~---a~~aA---~~~gIP~v~is~~ 147 (992)
.++.+++++.+||+|+.|...+ |..++ +..++|+|.+|.+
T Consensus 43 ~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecC
Confidence 4556778899999999997221 22222 3457998776543
No 127
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=24.48 E-value=83 Score=31.74 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred CccEEEEEeccCCCcccHHHHHHHHHHHHHC--CCcEEE-EeC
Q 001947 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHV-VTG 52 (992)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--GheV~~-~~~ 52 (992)
|+|+.| +++ |.|+. +.++.++|.+. +++|.. +|.
T Consensus 3 m~ki~v--l~s--G~g~~--~~~~l~~l~~~~l~~~I~~Vit~ 39 (212)
T 3av3_A 3 MKRLAV--FAS--GSGTN--FQAIVDAAKRGDLPARVALLVCD 39 (212)
T ss_dssp CEEEEE--ECC--SSCHH--HHHHHHHHHTTCCCEEEEEEEES
T ss_pred CcEEEE--EEE--CCcHH--HHHHHHHHHhCCCCCeEEEEEeC
Confidence 655555 444 44553 66778888876 678864 454
No 128
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=24.39 E-value=68 Score=31.91 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC---CCCCeEEcCCC-CC---HHHHHhhcCEEEecCCh
Q 001947 224 KLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ---LPPNFIKLPKD-AY---TPDFMAASDCMLGKIGY 289 (992)
Q Consensus 224 ~~Vlvs~Gg~~~~~~ll~~l~~~~~~~Vv~G~~~~~---l~~nv~v~~f~-~~---~p~lL~aaDlvIt~~G~ 289 (992)
..|+|++|+...+..+.+.|...++.+++....... +..++.++... .+ +.+++..+|++|..+|.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 468888766555567777777777877766654332 44666654321 22 23567789999987763
No 129
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=23.75 E-value=1.2e+02 Score=29.56 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=24.2
Q ss_pred HHhhcCEEEe-cCChhH---HHHHHHcCCcEEEEeC
Q 001947 276 FMAASDCMLG-KIGYGT---VSEALAYKLPFVFVRR 307 (992)
Q Consensus 276 lL~aaDlvIt-~~G~~T---v~Eal~~GvP~V~iP~ 307 (992)
+...+|++|. .+|+|| +.|++..++|++++|.
T Consensus 104 m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~ 139 (176)
T 2iz6_A 104 NALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGT 139 (176)
T ss_dssp CGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcC
Confidence 3456898886 456665 5577789999999984
No 130
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=22.39 E-value=1.5e+02 Score=29.82 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCccEEEEEeccCCCcccHHHHHHHHHHHHHCC--CcEEE-EeCC
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHV-VTGA 53 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--heV~~-~~~~ 53 (992)
.|.+++|+++++|. ||. ..+|.+++++.+ ++|.. +|..
T Consensus 4 ~m~~~ri~vl~SG~--gsn--l~all~~~~~~~l~~~I~~Visn~ 44 (209)
T 4ds3_A 4 SMKRNRVVIFISGG--GSN--MEALIRAAQAPGFPAEIVAVFSDK 44 (209)
T ss_dssp --CCEEEEEEESSC--CHH--HHHHHHHHTSTTCSEEEEEEEESC
T ss_pred cCCCccEEEEEECC--cHH--HHHHHHHHHcCCCCcEEEEEEECC
Confidence 47777887777755 554 456677776543 57764 4543
No 131
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=22.20 E-value=1.1e+02 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCccEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCC
Q 001947 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (992)
Q Consensus 12 ~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~ 53 (992)
.++|+.+ .++ |..-+.-+..+++.|++.|++|+++...
T Consensus 3 ~~k~Ill--gvT--Gaiaa~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 3 GPERITL--AMT--GASGAQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp SCSEEEE--EEC--SSSCHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCCEEEE--EEE--CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3445444 555 4345666999999999999999987553
No 132
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.18 E-value=98 Score=31.35 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCHH---H-HHhhcCEEEe-cCChhHHHHHH---H------cCCcEEEEeCCCCCC
Q 001947 271 AYTP---D-FMAASDCMLG-KIGYGTVSEAL---A------YKLPFVFVRRDYFNE 312 (992)
Q Consensus 271 ~~~p---~-lL~aaDlvIt-~~G~~Tv~Eal---~------~GvP~V~iP~~~~~E 312 (992)
.+++ . +...||+||. .+|+||+-|.. . +++|++++...++.+
T Consensus 97 ~~f~~Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~ 152 (215)
T 2a33_A 97 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 152 (215)
T ss_dssp SSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTH
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhH
Confidence 3566 2 4467999886 56788876665 3 389999998665554
No 133
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=21.90 E-value=5.7 Score=44.66 Aligned_cols=47 Identities=17% Similarity=-0.001 Sum_probs=35.7
Q ss_pred CCCcccccccccccccccccCCCCCCCCCCCCCCCcc--ccccceeecCCCCC
Q 001947 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVK--FTEDFEILHGDCQG 451 (992)
Q Consensus 401 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 451 (992)
.++.+..|.-++|....+..+.+.|.+. +++|+ |+||.|||.+||+.
T Consensus 346 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~----~liRlsvGle~~~dli~dl~~ 394 (400)
T 3nmy_A 346 VESLVNHPAVMTHASIPVARREQLGISD----ALVRLSVGIEDLGDLRGDLER 394 (400)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHH
T ss_pred CcceeeCccccccccCCHHHHHhcCCCc----CeEEEEeCcCCHHHHHHHHHH
Confidence 4456778888888877665555556666 89998 89999999998653
No 134
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.42 E-value=2.6e+02 Score=26.97 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCHH---HHH-hhcCEEEe-cCChhHH---HHHHH-------cCCcEEEEe
Q 001947 271 AYTP---DFM-AASDCMLG-KIGYGTV---SEALA-------YKLPFVFVR 306 (992)
Q Consensus 271 ~~~p---~lL-~aaDlvIt-~~G~~Tv---~Eal~-------~GvP~V~iP 306 (992)
.+++ .+| ..||++|. .+|+||+ .|++. +++| +++.
T Consensus 85 ~~f~~Rk~~~~~~sda~ivlpGG~GTl~El~e~lt~~q~g~~~~kP-vll~ 134 (171)
T 1weh_A 85 ATLPQRIGRLLDLGAGYLALPGGVGTLAELVLAWNLLYLRRGVGRP-LAVD 134 (171)
T ss_dssp SSHHHHHHHHHHHEEEEEECSCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhCccCCCe-EEEC
Confidence 4566 333 57999887 5678885 46666 7899 8886
No 135
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.21 E-value=1.4e+02 Score=30.55 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=32.5
Q ss_pred cEEEEEeccCCCcccHHHHHHHHHHHHHCCCcEEEEeCCC
Q 001947 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (992)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~GheV~~~~~~~ 54 (992)
+++| |+...+|.|=.+-++.+|.+|.++|++|.++...+
T Consensus 6 ~l~I-~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKV-FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEE-EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEE-EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5666 45677889999999999999999999998876554
No 136
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=21.01 E-value=82 Score=32.48 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=41.9
Q ss_pred cEEEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC-CCCCeEEc--CCCC--CHHHHHhhcCEEEecCCh
Q 001947 224 KLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKL--PKDA--YTPDFMAASDCMLGKIGY 289 (992)
Q Consensus 224 ~~Vlvs~Gg~~~~~~ll~~l~~~~~~~Vv~G~~~~~-l~~nv~v~--~f~~--~~p~lL~aaDlvIt~~G~ 289 (992)
++|+|++|+.+-+..+.+.|...++.+++....... ...++..+ +..+ .+..++..+|++|..+|.
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~ 74 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI 74 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence 468899877666667777777667776666554332 23455443 2222 133567789999998885
Done!