Query 001950
Match_columns 992
No_of_seqs 243 out of 1112
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 5E-179 2E-183 1652.7 80.3 835 120-992 17-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3E-164 1E-168 1516.4 60.8 833 122-992 11-1046(1046)
3 2yhb_A QDE-2, post-transcripti 100.0 2E-100 5E-105 883.7 24.7 413 542-992 2-437 (437)
4 1yvu_A Hypothetical protein AQ 100.0 5.3E-98 2E-102 903.3 40.4 621 196-949 48-696 (706)
5 1u04_A Argonaute, hypothetical 100.0 3.2E-88 1.1E-92 816.3 40.5 660 142-948 3-758 (771)
6 2yha_A Post-transcriptional ge 100.0 6.9E-83 2.3E-87 727.7 26.8 365 542-992 2-388 (388)
7 3ho1_A Argonaute; argonaute, p 100.0 1E-80 3.5E-85 738.6 46.1 637 142-943 6-668 (685)
8 2w42_A PIWI, putative uncharac 100.0 2E-54 6.8E-59 499.6 14.6 363 516-946 5-405 (427)
9 4g0x_A Protein argonaute 1; MI 99.9 7.9E-28 2.7E-32 238.1 14.3 145 544-688 2-147 (147)
10 1vyn_A Argonaute2; nucleic aci 99.9 1E-27 3.6E-32 235.7 9.1 138 335-475 2-143 (143)
11 4g0o_A Protein argonaute 5; MI 99.9 3.2E-27 1.1E-31 231.4 11.9 138 544-688 2-139 (139)
12 3luc_A Protein argonaute-2; MI 99.9 1.2E-25 4E-30 220.2 13.8 135 544-685 2-138 (138)
13 4g0m_A Protein argonaute 2; MI 99.9 6.4E-26 2.2E-30 225.2 9.7 144 544-688 2-150 (150)
14 3mj0_A Protein argonaute-2; ar 99.9 4.5E-24 1.5E-28 203.8 8.7 119 336-458 1-124 (124)
15 2xfm_A MIWI, PIWI-like protein 99.9 1E-23 3.6E-28 208.8 8.0 134 336-485 1-149 (150)
16 3qir_A PIWI-like protein 2; st 99.9 6.1E-22 2.1E-26 194.4 9.0 130 337-483 2-147 (148)
17 1r6z_P Chimera of maltose-bind 99.8 4.2E-20 1.4E-24 220.0 10.0 130 328-461 375-509 (509)
18 3o7v_X PIWI-like protein 1; PI 99.8 2.3E-19 7.8E-24 170.6 10.1 114 338-467 2-124 (124)
19 2qvw_A GLP_546_48378_50642; di 98.3 1.8E-07 6.1E-12 114.4 4.5 84 364-451 151-252 (756)
20 2nrr_A Uvrabc system protein C 76.5 14 0.00049 35.9 10.1 103 703-844 17-120 (159)
21 2nrt_A Uvrabc system protein C 60.3 31 0.0011 35.4 9.1 97 703-837 22-119 (220)
22 3qbz_A DDK kinase regulatory s 55.7 4 0.00014 39.5 1.5 65 775-839 46-119 (160)
23 3iyo_A Capsid protein; amino a 38.2 41 0.0014 38.5 6.3 38 50-89 15-52 (660)
24 3c65_A Uvrabc system protein C 34.6 1.6E+02 0.0055 30.2 9.7 99 703-837 14-118 (226)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=5e-179 Score=1652.66 Aligned_cols=835 Identities=42% Similarity=0.743 Sum_probs=714.4
Q ss_pred CCCCCCCcccCCCCCCCCCCCCeEEEEeeEEEeecCCCceeeEeEEEccCCCChHHHHHHHHHHHHHhcccccCCCccee
Q 001950 120 GFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAY 199 (992)
Q Consensus 120 ~~~~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~y 199 (992)
+||++++.+.+|+|||+||.|++|.|+||||++++++..+|||||+|.|+..+++++|++++++++.++...|++..+||
T Consensus 17 ~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~af 96 (861)
T 4f3t_A 17 PPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVF 96 (861)
T ss_dssp --------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEE
T ss_pred CCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEE
Confidence 35667788999999999999999999999999999888999999999999888899999999999888666788777899
Q ss_pred eCcceEEEecccCCCceeEEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhh
Q 001950 200 DGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLREL 279 (992)
Q Consensus 200 DG~k~lys~~~Lp~~~~~f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~ 279 (992)
||+++|||+.+||++...+++.+....+ .++++|+|+|++++++++++|.+||+|...+.+.++||+||||||+.
T Consensus 97 DG~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~ 171 (861)
T 4f3t_A 97 DGRKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL 171 (861)
T ss_dssp CSSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH
T ss_pred cCcceEEECCcCCCCCcceEEEEecCCC-----CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh
Confidence 9999999999999865433333321111 24678999999999999999999999998888899999999999999
Q ss_pred hcCCccccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeecccccccccccHHHHHHHHhcCCcc---CCC
Q 001950 280 STKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVL---SRT 356 (992)
Q Consensus 280 ~~~~~~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~---~r~ 356 (992)
+++++..+||+||+++.+...++++|+|+|+||++|||+++++|+||||+++++||++++|+|+|.++++.++. .++
T Consensus 172 ~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~ 251 (861)
T 4f3t_A 172 PSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKP 251 (861)
T ss_dssp HHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CC
T ss_pred ccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccc
Confidence 98899999999998765545689999999999999999999999999999999999999999999999875432 345
Q ss_pred CChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecC-CCC--cceeHHHHHHHHhCccccCCCCCcee
Q 001950 357 LSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVD-DNS--TMKSVVEYFQEMYGFTIQHTHLPCLQ 433 (992)
Q Consensus 357 l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~-~~g--~~iSV~eYF~~~Y~i~L~~p~lPll~ 433 (992)
+++.++.+++++|+|++|.++|.++.+|+|+|.||++.++.+.+|.++ ++| .++||+|||+++|||+|+||+||||+
T Consensus 252 ~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~ 331 (861)
T 4f3t_A 252 LTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQ 331 (861)
T ss_dssp CCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEE
T ss_pred cCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEE
Confidence 778889999999999999999976556789999999988989999753 233 36899999999999999999999999
Q ss_pred eCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHHHHhccCCccccccccceEEcccceEEE
Q 001950 434 VGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVE 513 (992)
Q Consensus 434 ~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~ 513 (992)
+|++++++|||||||.|+|||++.++|+++|+++|||+|+.+|.+|.+.|.++++.++++.+++|++|||+|+++|++|+
T Consensus 332 ~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~ 411 (861)
T 4f3t_A 332 VGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVT 411 (861)
T ss_dssp ESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEE
T ss_pred ecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEE
Confidence 99888899999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred eEEcCCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCC--cchHHHHHHHHHHHHHHHhcCcccCCC
Q 001950 514 ARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRS--VQESVARGFCNELAQMCQVSGMEFNPE 591 (992)
Q Consensus 514 aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~--~~~~~~~~f~~~L~~~~~~~Gm~i~~~ 591 (992)
|||||||+|.|+++.+ ....|.+|+||+++++|+.++++++|++++++.. ..++.+++|++.|.+.|+.+||.+..+
T Consensus 412 gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~ 490 (861)
T 4f3t_A 412 GRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQ 490 (861)
T ss_dssp EEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSC
T ss_pred EEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCC
Confidence 9999999999986432 2346789999999999999999999999998742 356789999999999999999999865
Q ss_pred CcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHH
Q 001950 592 PVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLA 671 (992)
Q Consensus 592 p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~ 671 (992)
|.+.......+.++..++.+.+.. .+++|||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.
T Consensus 491 p~~~~~~~~~~~~~~~~~~l~~~~------~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 491 PCFCKYAQGADSVEPMFRHLKNTY------AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHS------TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred CeEEEecCchHHHHHHHHHHHhhc------CCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 644222223345565555554321 3689999999965 578999999999999999999999999888999999
Q ss_pred HHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchh
Q 001950 672 NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 751 (992)
Q Consensus 672 Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E 751 (992)
||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+|+ ..++|.+.+++|.+++|
T Consensus 564 ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E 639 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDA-HPNRYCATVRVQQHRQE 639 (861)
T ss_dssp HHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSS-SSCCEEEEEEEESTTCC
T ss_pred HHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCC-CcceEEEEEEEcCCCcc
Confidence 99999999999999988643 234455679999999999999886678999999999997 79999999999999999
Q ss_pred hhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEE
Q 001950 752 LIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF 831 (992)
Q Consensus 752 ~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~ 831 (992)
+|++| ++|+.++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++.++|+|+|||
T Consensus 640 ~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~ 706 (861)
T 4f3t_A 640 IIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITF 706 (861)
T ss_dssp SCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred HHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHH
Q 001950 832 IIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSL 911 (992)
Q Consensus 832 Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~l 911 (992)
|||+||||+|||+.+.++ ..++.+|++||||||++||||.+||||||||.++|||||||||+||+||+++++|+||+|
T Consensus 707 Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~l 784 (861)
T 4f3t_A 707 IVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQIL 784 (861)
T ss_dssp EEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHH
T ss_pred EEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHH
Confidence 999999999999987532 346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCccccCCC--CCCCCCCCccccccccCCCCCCCcccccccccCCe
Q 001950 912 TNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENG--STDGSGHTSTKSTRAVGESGVRPLPALKENVKRVM 989 (992)
Q Consensus 912 Ty~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 989 (992)
||+|||+|+|||++|||||||||||++|+|||+||.+...+++ ++.++++. +. ... +...+..||++++++|
T Consensus 785 ty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~~~vh~~~~~~M 858 (861)
T 4f3t_A 785 TYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN--GR---DHQ-ALAKAVQVHQDTLRTM 858 (861)
T ss_dssp HHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC------------------C---CST-THHHHTCCCHHHHTTT
T ss_pred HHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCc--cc---chh-hhhhhhhhhhhhccCc
Confidence 9999999999999999999999999999999999987553222 22111110 01 000 0012346999999999
Q ss_pred eeC
Q 001950 990 FYC 992 (992)
Q Consensus 990 ~y~ 992 (992)
|||
T Consensus 859 ~y~ 861 (861)
T 4f3t_A 859 YFA 861 (861)
T ss_dssp TTC
T ss_pred eeC
Confidence 997
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.9e-164 Score=1516.36 Aligned_cols=833 Identities=24% Similarity=0.384 Sum_probs=656.7
Q ss_pred CCCCCcccCCCCCCCCCCCCeEEEEeeEEEeecCCC---------------------ceeeEeEEEccCCC---------
Q 001950 122 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDK---------------------DLNQYDVTITPEVA--------- 171 (992)
Q Consensus 122 ~~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~---------------------~iy~YdV~i~p~~~--------- 171 (992)
|.+...+.+|.||+|||.|++|.|+||||.+.+.+. .||+|+|+|.|+..
T Consensus 11 ~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~ 90 (1046)
T 4f1n_A 11 EDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPV 90 (1046)
T ss_dssp -CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-------------
T ss_pred CCccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccC
Confidence 335577899999999999999999999999999544 79999999998633
Q ss_pred -----ChHHHHHHHHHHHHHhc-ccccCCCcceeeCcceEEEecccC---CCceeEEEEee-----ccccC---------
Q 001950 172 -----SRTVNRAIMAELVRLYK-ESDLGMRLPAYDGRKSLYTAGELP---FVWKEFKIKLV-----DELDG--------- 228 (992)
Q Consensus 172 -----~k~~~r~i~~~l~~~~~-~~~~~~~~~~yDG~k~lys~~~Lp---~~~~~f~V~l~-----~~~~~--------- 228 (992)
+++.++.|+..|+++.. ...++. .+||||+++|||..+|| +....+.|++. ++.++
T Consensus 91 ~~~~~~~~k~~~ii~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 169 (1046)
T 4f1n_A 91 PPQELSKPKKYELIEALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQ 169 (1046)
T ss_dssp ----CCHHHHHHHHHHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC-----------------------
T ss_pred cccccchhHHHHHHHHHHHhcchhhhcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCccccccccccc
Confidence 24567788988887611 112544 48999999999999999 44445777766 22221
Q ss_pred --CCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCc-----hHHHHHHHHHHHhhhcCC---ccccc-cccCCCC-C
Q 001950 229 --INGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAP-----QEALQILDIVLRELSTKR---YCPIG-RSFFSPS-I 296 (992)
Q Consensus 229 --~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~-----~~~iq~LniIlr~~~~~~---~~~vG-rsFF~~~-~ 296 (992)
.....++++|+|+|++++++++.+|.+||.|...+.+ .+++++|++||++.+... ..++| ++||..+ .
T Consensus 170 ~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~ 249 (1046)
T 4f1n_A 170 KKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNF 249 (1046)
T ss_dssp --------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTT
T ss_pred ccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCC
Confidence 0112567889999999999999999999999865421 679999999999987443 24555 4588543 2
Q ss_pred CCCccCCCCEEEEeeeeeeeeeccceeEeeeeccccccccc-----------------ccHHHHHHHHhcCCc-------
Q 001950 297 RTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEP-----------------LPVIEFVAQLLGKDV------- 352 (992)
Q Consensus 297 ~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~-----------------~~lld~i~~~~~~~~------- 352 (992)
+...+||+|+|+|+|||+||||++++|+||||+++++||+. ++|+|+|.++++..+
T Consensus 250 ~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~ 329 (1046)
T 4f1n_A 250 AKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRY 329 (1046)
T ss_dssp CCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSC
T ss_pred CccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccc
Confidence 33578999999999999999999999999999999999984 799999999886211
Q ss_pred ---cCCCCChhHH-------HHHHHHhcceEEEEeecC-------C-----ccceEEEecccCCCCCCeeeecCCC----
Q 001950 353 ---LSRTLSDSDR-------VKIKKALRGVKVEVTHRG-------T-----VRRKYRVSGLTSQPTRELVFPVDDN---- 406 (992)
Q Consensus 353 ---~~r~l~~~~~-------~~l~~~LkGlkV~~~~~~-------~-----~~r~~rI~gi~~~~a~~~~F~~~~~---- 406 (992)
..+.++..++ .+++++|+||+|+++|.+ + ..+.++|.||+..++.+.+|+++++
T Consensus 330 ~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~ 409 (1046)
T 4f1n_A 330 NPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKK 409 (1046)
T ss_dssp TTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC----------
T ss_pred cccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccc
Confidence 1233333444 789999999999999974 1 1246999999999999999987643
Q ss_pred ------C---cceeHHHHHHHHhCccccCCCCCceeeCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCch
Q 001950 407 ------S---TMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477 (992)
Q Consensus 407 ------g---~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~ 477 (992)
| +.+||+|||+++|||+|+||+||||++|++ .+|||||||.|+|||+|+++|++ +++|||+||++|.
T Consensus 410 ~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~ 485 (1046)
T 4f1n_A 410 NSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRPT 485 (1046)
T ss_dssp -------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCHH
T ss_pred cccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCcH
Confidence 1 468999999999999999999999999975 38999999999999999999997 4799999999999
Q ss_pred hhHHHHHHHHH-----hccCCccccccccceEEcccceEEEeEEcCCCceeccCCCCc-------cccCCCCcccccccc
Q 001950 478 DRENDILQTVQ-----QNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE-------KDCLPQVGQWNMMNK 545 (992)
Q Consensus 478 ~R~~~I~~~~~-----~~~~~~~~~l~~fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~-------~~~~p~~G~Wnl~~~ 545 (992)
+|++.|.+... .+.++.+++|++|| +|+.+|++|+|||||||.|.|+++... ....|++|.|||+++
T Consensus 486 eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~ 564 (1046)
T 4f1n_A 486 EKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGH 564 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTC
T ss_pred HHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCC
Confidence 99999998642 23345678999999 999999999999999999999874311 013567899999999
Q ss_pred eeecCce-eceeEEEEeCCC------cchHHHHHHHHHHHHHHHhcCcccCCC--Cccc---------ccCC--------
Q 001950 546 KMINGMT-VSRWACINFSRS------VQESVARGFCNELAQMCQVSGMEFNPE--PVIP---------IHNA-------- 599 (992)
Q Consensus 546 kf~~~~~-i~~W~vv~~~~~------~~~~~~~~f~~~L~~~~~~~Gm~i~~~--p~~~---------~~~~-------- 599 (992)
+|+.++. +..|.++++... ...+.++.|++.|.+.|+.+||.+..+ |.+. +...
T Consensus 565 kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~ 644 (1046)
T 4f1n_A 565 QFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGR 644 (1046)
T ss_dssp CCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-------------
T ss_pred EEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccccccccc
Confidence 9999874 567766654321 134678999999999999999999753 3221 0000
Q ss_pred ------------------ChhHHHHHHHHHHHhhcccccCCCceEEEEEecCC-CCchhhhHHHHhhhccCceeeeEeec
Q 001950 600 ------------------RPDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLYGDLKRICETDLGIISQCCLTK 660 (992)
Q Consensus 600 ------------------~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~-~~~~Y~~IK~~~~~~~GI~TQci~~~ 660 (992)
..++.+..|.++++.+ .+++|||||||++ +.++|+.||++||+++||+||||+.+
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~ 718 (1046)
T 4f1n_A 645 GSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI------PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWD 718 (1046)
T ss_dssp ---------------CCCBCCTTHHHHHHHHHTC------CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHH
T ss_pred ccccccccccccccccccccchHHHHHHHHHHhc------CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehh
Confidence 0023455566666542 3689999999997 67899999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHhhcCCcccccccccccCCCccc----CCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCc
Q 001950 661 HVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVS----DIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEV 736 (992)
Q Consensus 661 ~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~----~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~ 736 (992)
++.|.+.||+.||+||||+||||+||.|.+.. ++.+. ..+|||||+||+|++++. .+||||||||+|+ .+
T Consensus 719 t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d~-~~ 792 (1046)
T 4f1n_A 719 NFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYDD-KF 792 (1046)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCSS-SC
T ss_pred hhccccHHHHHHHHHHHHHhcCCeeeeccccc---cccccccccCCceEEEeeeeecCCCCC--CCeeeEEEEEECC-Cc
Confidence 99998999999999999999999999997531 23222 347999999999953332 4699999999997 89
Q ss_pred ceeeeEEEeecc-chhhhhhhhccccCCCcCcchhHHHHHHHHHHHHH-cCCCCceEEEEeCCCChhhHHHHHHHHHHHH
Q 001950 737 TKYAGLVCAQAH-RQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKA-TGQKPLRIIFYRDGVSEGQFYQVLLYELDAI 814 (992)
Q Consensus 737 ~~y~~~~~~Q~~-~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~-~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i 814 (992)
++|.+.+++|.+ ++|+|++| ++||.++|+.|++. ++.+|++|||||||||||||.+|+++||++|
T Consensus 793 t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~I 859 (1046)
T 4f1n_A 793 TQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSI 859 (1046)
T ss_dssp CCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHH
T ss_pred CeEeeEEEEecCCCccHHHHH-------------HHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHH
Confidence 999999999998 99999999 99999999999997 7999999999999999999999999999999
Q ss_pred HHHHHhhC------CCCCCCEEEEEEeecccccccccCCCCCCCC------CCCCCCcceeeecCccccCCcceEEEeec
Q 001950 815 RKACASLE------PNYQPPVTFIIVQKRHHTRLFANNHRDRSST------DRSGNILPGTVVDSKICHPTEFDFYLCSH 882 (992)
Q Consensus 815 ~~A~~~~~------~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~------~~~~N~~pGTVVD~~It~p~~~dFyL~Sh 882 (992)
++||.++. ++|+|+||||||+||||+|||+.+.++.+.. ++.+|++||||||++||||.+||||||||
T Consensus 860 k~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh 939 (1046)
T 4f1n_A 860 KESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSH 939 (1046)
T ss_dssp HHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECS
T ss_pred HHHHHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEcc
Confidence 99999985 5799999999999999999999764321111 13689999999999999999999999999
Q ss_pred CCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCcccc----CCCCCCC
Q 001950 883 AGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQ----ENGSTDG 958 (992)
Q Consensus 883 ~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~----~~~~~~~ 958 (992)
.++|||||||||+|||||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+|+...+. ++++.++
T Consensus 940 ~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~ 1019 (1046)
T 4f1n_A 940 QALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKG 1019 (1046)
T ss_dssp CCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC-----
T ss_pred ccCCCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999987542 2222111
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001950 959 SGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
+. +. ......++|+.||+|++++||||
T Consensus 1020 ~~---~~----~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1020 SK---DQ----PTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp ------------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred Cc---cc----cccCcccccchhhhhhccceeeC
Confidence 11 00 11111245889999999999997
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.6e-100 Score=883.68 Aligned_cols=413 Identities=30% Similarity=0.514 Sum_probs=290.7
Q ss_pred cccceeec-CceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCc---ccccCCChhHHHHHHHHHHHhhcc
Q 001950 542 MMNKKMIN-GMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPV---IPIHNARPDQVEKALKHVYHSSMS 617 (992)
Q Consensus 542 l~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~---~~~~~~~~~~~~~~l~~~~~~~~~ 617 (992)
|++++|++ ++++++|++++++...+...++.|++.|.+.|+.+||.++.+.. +.......+.+ .+++....
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence 56789999 78999999999964334557899999999999999999987531 11112222222 22333211
Q ss_pred cccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchh--hHHHHHHHHHhhcCCcccccccccccC
Q 001950 618 KTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQ--YLANVSLKINVKMGGRNTVLLDAISCR 695 (992)
Q Consensus 618 ~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~n~~l~~~~~~~ 695 (992)
.+++|||||||+++.++|+.||++||+++||+||||..+++.|.++| |+.||+||||+||||+||.|.+ .
T Consensus 77 ----~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~ 148 (437)
T 2yhb_A 77 ----SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----P 148 (437)
T ss_dssp ----HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----C
T ss_pred ----CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----c
Confidence 36899999999988889999999999999999999999999888888 9999999999999999999975 2
Q ss_pred CCcccCCCeEEEEEeecCCC---CC--CCCCCceEEEEeccCCCCcceeeeEEEeec-cchhhhhhhhccccCCCcCcch
Q 001950 696 IPLVSDIPTIIFGADVTHPE---NG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLYKTWHDPVRGTVS 769 (992)
Q Consensus 696 ~p~~~~~~tmiiG~DV~Hp~---~~--~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~d~~~~~~~ 769 (992)
+|++.+.+|||||+||+||+ |+ ....|||||||||+|. ..++|.+.++.|. +++|+|++|
T Consensus 149 ~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l------------- 214 (437)
T 2yhb_A 149 IPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF------------- 214 (437)
T ss_dssp CHHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH-------------
T ss_pred ccccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecCC-CcCeeeeEEEEcCCcchhHHHHH-------------
Confidence 45555678999999999998 76 3467999999999995 8999999999999 999999999
Q ss_pred hHHHHHHHHHHHH---HcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEeeccccccccc
Q 001950 770 GGMIRDLLISFRK---ATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFIIVQKRHHTRLFAN 845 (992)
Q Consensus 770 ~~~i~~~L~~f~~---~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y-~P~it~Ivv~KrhhtRff~~ 845 (992)
++|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.++.++| +|+||||||+||||+|||+.
T Consensus 215 ~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~ 294 (437)
T 2yhb_A 215 TDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPT 294 (437)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------
T ss_pred HHHHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccC
Confidence 9999999999999 8899999999999999999999999999999999999998888 89999999999999999998
Q ss_pred CCCCCCCCC-CCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCC------CCCHHHHHHHHHHhhhh
Q 001950 846 NHRDRSSTD-RSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------NFTADGIQSLTNNLCYT 918 (992)
Q Consensus 846 ~~~~~~~~~-~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~------~~~~d~Lq~lTy~LC~~ 918 (992)
+..+ .+ +.+|++||||||++||||.+||||||||.++|||||||||+||+||+ ++++|+||+|||+|||+
T Consensus 295 ~~~~---~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~ 371 (437)
T 2yhb_A 295 DPKH---IHFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYL 371 (437)
T ss_dssp ------------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC
T ss_pred Cccc---cccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHh
Confidence 7543 23 68999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred ccccCCCccccchhhhHHHHHHHhhhhcCccccCCCCCCCCCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001950 919 YARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 919 y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
|+|||++||||||+||||++|+|||+||.+..++.++++++++ + .. .. . ..+..+|++|+++||||
T Consensus 372 y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~-~-~~--~~--~--~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 372 FGRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKT-D-DF--AR--W--GNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp ----------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCH-H-HH--HH--H--HHHTSCCGGGTTSCTTC
T ss_pred hccccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCC-C-Cc--cc--c--ccccccCHhhcCCceeC
Confidence 9999999999999999999999999999865422211111110 0 00 00 0 11457999999999997
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=5.3e-98 Score=903.27 Aligned_cols=621 Identities=15% Similarity=0.121 Sum_probs=469.8
Q ss_pred cceeeCcceEEEecccCCCceeEEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHH
Q 001950 196 LPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIV 275 (992)
Q Consensus 196 ~~~yDG~k~lys~~~Lp~~~~~f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniI 275 (992)
.+.|-...-+|++++...+.. -.+..+ +. .|+|++++++.. ..-..+.+++|+++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 104 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEKDTL--YLTLSN----------GE--IVELKRVGEEEF---------RGFQNERECQELFRDF 104 (706)
T ss_dssp SCEEEETTEEEESSCCTTCCC--EEEECS----------SS--CEEEEECCCEEC---------CCCSCHHHHHHHHHHH
T ss_pred CccccccccceeccccccceE--EEEcCC----------CC--EEEEEEEEEeec---------cCCCCCHHHHHHHHHH
Confidence 356666678899988766532 222211 11 566999998761 0012457899999999
Q ss_pred HHhhhcCCccccccccCCCCCCCCccC---CCCEEEEeeeeeeeeecc-ceeEeeeecccccccccccHHHHHHHHhcCC
Q 001950 276 LRELSTKRYCPIGRSFFSPSIRTPQRL---GDGLESWCGFYQSIRPTQ-MGLSLNIDMASAAFIEPLPVIEFVAQLLGKD 351 (992)
Q Consensus 276 lr~~~~~~~~~vGrsFF~~~~~~~~~l---g~Gle~w~Gf~~SvR~~~-~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~ 351 (992)
|+.. ...+..+||+||++... ..+ .++||+|+||.+||+..+ ++++||+|++|+ |++..+|+|+|.+ ....
T Consensus 105 ~~~~-~l~~~~igr~~~~~~~~--~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~~ 179 (706)
T 1yvu_A 105 LTKT-KVKDKFISDFYKKFRDK--ITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDFN 179 (706)
T ss_dssp HHHT-CHHHHHHHHHHHHHHHH--HEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCCC
T ss_pred HHHc-CChHhhhCccccCcccc--ccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHH-hhhc
Confidence 9987 44556899999987532 334 567999999999999998 999999999999 7999999999998 4421
Q ss_pred ccCCCCChhHHHHHHHHhcceEEEEeecCCccceE--EEecc-cCCCCCCeeeecCCCCcceeHHHHHHHHhCcc-----
Q 001950 352 VLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKY--RVSGL-TSQPTRELVFPVDDNSTMKSVVEYFQEMYGFT----- 423 (992)
Q Consensus 352 ~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~--rI~gi-~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~----- 423 (992)
+ -.+..+|. +.+| +|++| +++..+..+|. + |..+| ||+++|++.
T Consensus 180 ------~-------------~~~~~~y~---n~ty~~riddi~~~~~~P~~~f~-~--g~~iS---Yyk~~~~~~q~ll~ 231 (706)
T 1yvu_A 180 ------P-------------KRIRVKPI---GIDFVGRVQDVFKAKEKGEEFFR-L--CMERS---THKSSKKAWEELLK 231 (706)
T ss_dssp ------C-------------TTCEEEET---TCCCCEEEEEEEESTTSCHHHHH-H--HHHTC---SSHHHHHHHHHHHH
T ss_pred ------c-------------hhHHhhcc---cceeccccCcccccCCCcceEec-C--CCCcc---eEecccCcchhhhh
Confidence 0 12345564 2347 99998 99999999996 2 44468 999988776
Q ss_pred ---ccCCCCCceeeCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHHHHhccCCccccccc
Q 001950 424 ---IQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKE 500 (992)
Q Consensus 424 ---L~~p~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~ 500 (992)
.+.+.+|+++.+. +. .|+++|.. -.+.++|+++|+++|+++|+.+|++|.+.|.++++.. ++.|++
T Consensus 232 ~r~~~~~~~~~~v~~~--~~--~p~~lL~p---lc~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~ 300 (706)
T 1yvu_A 232 NRELREKAFLVVLEKG--YT--YPATILKP---VLTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRD 300 (706)
T ss_dssp CHHHHHHCEEEEETTS--CE--EEGGGEEE---CCCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHT
T ss_pred ccccccCCceEEeccC--CC--CCceeecc---ccccCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHH
Confidence 4445555555433 22 13443322 1134689999999999999999999999999988753 578999
Q ss_pred cceEEcccceEEEeEEcCCCceeccCCCCccccCCCCcccccccceeecCceece---eEEEEeCCCcchHHHHHHHHHH
Q 001950 501 FGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSR---WACINFSRSVQESVARGFCNEL 577 (992)
Q Consensus 501 fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~---W~vv~~~~~~~~~~~~~f~~~L 577 (992)
|||+|+++|++|+|||||+|+|.++.+.......+..|.|++. .+|+.++.++. |.+++..+ +..++.|++.|
T Consensus 301 fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i~~~~---~~~~~~f~~~L 376 (706)
T 1yvu_A 301 YGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSVYKKL---EWRKEEFLKEL 376 (706)
T ss_dssp TTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHH
T ss_pred cCCEECCceeecccEEcCCceeecCCCCcceeccCCccccccc-CceecccccccceEEEEEecch---hHHHHHHHHHH
Confidence 9999999999999999999999864432111222334566654 45888888999 85554322 22689999999
Q ss_pred HHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCC-------CCchhhhHHHHhhhcc
Q 001950 578 AQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-------NGSLYGDLKRICETDL 650 (992)
Q Consensus 578 ~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~-------~~~~Y~~IK~~~~~~~ 650 (992)
.+.|+.+||+++.++.......+.+ ..++.+.+... ...++|++|||+|++ +.++|+.||++|+ +.
T Consensus 377 ~~~~~~~G~~i~~p~~~~~~~~~~~---~~~~~l~~~~~---~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~ 449 (706)
T 1yvu_A 377 INFLKNKGIKLKIKGKSLILAQTRE---EAKEKLIPVIN---KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KK 449 (706)
T ss_dssp HHHHHTTTCEEEEEEEEEEECSSTT---HHHHHHHHHHT---TTSSCSEEEEEEC----------CHHHHHHHHHHH-HT
T ss_pred HHHHHHcCceecCCccccccchhHH---HHHHHHHHHhc---ccCCCcEEEEEECCccccccccCccHHHHHHHHHh-cC
Confidence 9999999999986533322233333 34444433221 124789999999998 7789999999965 99
Q ss_pred CceeeeEeecccccc-chhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEe
Q 001950 651 GIISQCCLTKHVFKI-SKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVA 729 (992)
Q Consensus 651 GI~TQci~~~~~~k~-~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVa 729 (992)
||+||||..+++.+. ..|++.||+||||+||||+||.|.. | ...+|||||+||+||+.+. ..||++|+||
T Consensus 450 GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~va 520 (706)
T 1yvu_A 450 MIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTK 520 (706)
T ss_dssp TCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEE
T ss_pred CCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeecc------C--CCCceEEEEEEEeccCCCC-CCceEEEEEE
Confidence 999999999998764 6799999999999999999999864 2 2357999999999997443 3599999999
Q ss_pred ccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHH
Q 001950 730 SQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLL 808 (992)
Q Consensus 730 S~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~ 808 (992)
|+|. ...++|.+....|. ++|++++| +..+|+.|++.++.+|++|||||||||| +
T Consensus 521 s~d~~g~~~~~~~~~~~q~-~~ei~~~l----------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~ 576 (706)
T 1yvu_A 521 IFNSKGELVRYYLTSYPAF-GEKLTEKA----------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------R 576 (706)
T ss_dssp EECTTSCEEEEEEEEECSC-TTHHHHHH----------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------H
T ss_pred EEcCCCCEEEEEEEecccc-cchHHHHH----------------HHHHHHHHHHhcCCCCcEEEEEeCCCCc-------H
Confidence 9994 13577887765554 78887654 4455677887888999999999999999 8
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCC-ccc
Q 001950 809 YELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAG-IQG 887 (992)
Q Consensus 809 ~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~-~qG 887 (992)
+|+++|++||.+ |.|+||||||+||||+|||+. +||+||||||. ..+||||++|.+ +||
T Consensus 577 ~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~-----------~np~pGTvVD~-----~~~~ffL~ss~~~~qG 636 (706)
T 1yvu_A 577 DEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSN-----------EKFIKGYFYKL-----SEDSVILATYNQVYEG 636 (706)
T ss_dssp HHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECS-----------CSCCTTEEEEB-----SSSEEEECCSCCCSTT
T ss_pred HHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECC-----------CCCCCeEEEEc-----CCCeEEEEecCCccCC
Confidence 999999999987 479999999999999999985 25999999994 468999998776 999
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCcc
Q 001950 888 TSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPD 949 (992)
Q Consensus 888 TarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~ 949 (992)
|+||+||+|+++|. ++|+||+|||+|||+|+|||++||||+|+||||++|+||+.++.+.
T Consensus 637 T~rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 637 THQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp CCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred CCCCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCCcc
Confidence 99999999444444 9999999999999999999999999999999999999999998753
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.2e-88 Score=816.30 Aligned_cols=660 Identities=15% Similarity=0.095 Sum_probs=474.4
Q ss_pred eEEEEeeEEEeec---CCCceeeEeEEEccCCCChHHHHHHHHHHHHHhcccccCCCcceeeCcc-eEEEecccCCCcee
Q 001950 142 KCIVKANHFFAEL---PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRK-SLYTAGELPFVWKE 217 (992)
Q Consensus 142 ~i~l~tN~f~i~~---~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~k-~lys~~~Lp~~~~~ 217 (992)
+..|.+|||++.. |+ .+|+|+|+++|++..+ ++..++..+. ..+| ..+|||.. .||++++|+.+
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~~-----~~~g--~~~fdg~~~~l~~~~~l~~~--- 70 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRLA-----YENV--GIVIDPENLIIATTKELEYE--- 70 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHHH-----HHTT--EEEEETTTTEEEESSCCCCS---
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHHH-----hhcC--cEEecCcceeeeccceeccC---
Confidence 6789999999976 66 9999999999997755 4444443332 2455 56999964 29999998721
Q ss_pred EEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhhh-cCC-----cccccccc
Q 001950 218 FKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS-TKR-----YCPIGRSF 291 (992)
Q Consensus 218 f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~~-~~~-----~~~vGrsF 291 (992)
+..+.|+++.+++++ +|++|+|+|... ..+ +..+||+|
T Consensus 71 -----------------~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~ 114 (771)
T 1u04_A 71 -----------------GEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKF 114 (771)
T ss_dssp -----------------SCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTT
T ss_pred -----------------CCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHHhhhc
Confidence 123777777776653 789999999986 445 77899999
Q ss_pred CCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeecccccccccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcc
Q 001950 292 FSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRG 371 (992)
Q Consensus 292 F~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkG 371 (992)
|++. .+ +.+++|+|+.+||+..+++++|++|++|++ .+..+|+|+|.++. ...+.+...+.|
T Consensus 115 ~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~-----------~~~~~~~~~~~g 176 (771)
T 1u04_A 115 RKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP-----------KELEEFLMTHKE 176 (771)
T ss_dssp SCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH-----------HHHHHHHHHSTT
T ss_pred CCCc-----cc-cccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHHHH-----------HHHHHHHHhccC
Confidence 9872 22 468999999999999999999999999998 78899999987532 244556667777
Q ss_pred eEEEEe--------ecCCccceEEEecccCCCCCCe--ee---ecCCC-CcceeHHHHHHHHhCccccCCCCCceeeCCC
Q 001950 372 VKVEVT--------HRGTVRRKYRVSGLTSQPTREL--VF---PVDDN-STMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ 437 (992)
Q Consensus 372 lkV~~~--------~~~~~~r~~rI~gi~~~~a~~~--~F---~~~~~-g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~ 437 (992)
.-|.+. |+.|.+ .|++++ .++..+.. +| ..+++ ++. ++.+||.++|++ ++++||+|+...+
T Consensus 177 ~~~~~~~~~~~~~vy~~n~~-~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~y~i--~d~~QPllvs~~~ 251 (771)
T 1u04_A 177 NLMLKDIASPLKTVYKPCFE-EYTKKP-KLDHNQEIVKYWYNYHIERYWNTP-EAKLEFYRKFGQ--VDLKQPAILAKFA 251 (771)
T ss_dssp TCEEEETTSTTCCEEEECBC-TTSSCB-CEECCHHHHHHHHHHHHHHHCCSH-HHHHHHHHHHCS--CCTTSCEEEEEES
T ss_pred cEEeeeccccceeEeecccc-eeecCC-ccccCCCChhheeceeecCCCCCc-chhHHHHHhcCc--CcCCCCeEEecch
Confidence 766666 543323 366665 54444444 55 53321 444 777777799995 8999999999643
Q ss_pred -------CccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHHHHhc-----cCC--ccccccccce
Q 001950 438 -------KKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQN-----AYD--QDLYAKEFGI 503 (992)
Q Consensus 438 -------~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~-----~~~--~~~~l~~fGi 503 (992)
.+.+||.||||.++. ...+++.+.+++|..++...|.+|.+.|.++++.+ .-+ ....|+.||
T Consensus 252 ~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~- 327 (771)
T 1u04_A 252 SKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEKIAQ- 327 (771)
T ss_dssp CC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEECCG-
T ss_pred hhccCCCCceeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHhhhh-
Confidence 246999999999985 33456667788999999999999999999998776 212 123567777
Q ss_pred EEcccceEEEeEEcCCCceeccCCCCccccCCCCcccc--cccceeecCce----ec------eeEEEEeCCCcchHHHH
Q 001950 504 KISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWN--MMNKKMINGMT----VS------RWACINFSRSVQESVAR 571 (992)
Q Consensus 504 ~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~----i~------~W~vv~~~~~~~~~~~~ 571 (992)
.++.. +.|.++++.+-.|..++. ..+..+.|. +++.+++.+.. ++ .|++++- +. ...+.
T Consensus 328 ~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~~-~~--~~~~~ 398 (771)
T 1u04_A 328 ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDS-GL--LADIQ 398 (771)
T ss_dssp GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEET-TS--CHHHH
T ss_pred ccCcC-cccccccccccceeecCc-----CCCccCCcchhhCCCcceecccchhhhhcccccceEEEEeC-Cc--hHHHH
Confidence 47755 676655554433443320 123468894 56667755442 44 4666654 32 45677
Q ss_pred HHH---------HHHHHHHHhcC-----------cccCCCC------cccccCCChhHHHHHHHHHHHhhcccccCCCce
Q 001950 572 GFC---------NELAQMCQVSG-----------MEFNPEP------VIPIHNARPDQVEKALKHVYHSSMSKTKGKELE 625 (992)
Q Consensus 572 ~f~---------~~L~~~~~~~G-----------m~i~~~p------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 625 (992)
+|+ +.|.+++..+| +.++.+. .+.....+.+.++..++++.+... +..++
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~----~~~~~ 474 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK----GKELG 474 (771)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT----TCSCE
T ss_pred HHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhcc----CCCCC
Confidence 777 44555443333 3333311 111111123466777777765532 34689
Q ss_pred EEEEEe-cCCCCchhhhHHHHhhhccCceeeeEeecccccc----c-----hhhHHHHHHHHHhhcCCcccccccccccC
Q 001950 626 LLLAIL-PDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI----S-----KQYLANVSLKINVKMGGRNTVLLDAISCR 695 (992)
Q Consensus 626 lv~vil-p~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ 695 (992)
||||++ |.++.+.|+.||++| .+.||+||||..+|+.+. . .+++.||++|||+||||+||.|+.
T Consensus 475 lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~----- 548 (771)
T 1u04_A 475 LAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY----- 548 (771)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC-----
T ss_pred EEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC-----
Confidence 987777 455567999999997 799999999999998643 2 778999999999999999999853
Q ss_pred CCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHH
Q 001950 696 IPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRD 775 (992)
Q Consensus 696 ~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~ 775 (992)
| ..++||||+||+|+.++. ..++++|+|+|.|+ ...+|.+....|.+++ .+. + +.|+++
T Consensus 549 -p---~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~E-~i~-l-------------~~~l~~ 607 (771)
T 1u04_A 549 -R---FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRGE-SVD-M-------------NEFFKE 607 (771)
T ss_dssp -C---CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSSS-SCC-H-------------HHHHHH
T ss_pred -C---CCCEEEEEEEEEcCCCCC-CceEEEEEEECCCC-CEEEEEEEEeecCCcc-EEc-H-------------HHHHHH
Confidence 2 257999999999986543 46888999999986 6778877555455544 443 6 789999
Q ss_pred HHHHHHHH-cCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCC
Q 001950 776 LLISFRKA-TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTD 854 (992)
Q Consensus 776 ~L~~f~~~-~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~ 854 (992)
+|.+|++. ++.+|++|||||||+ |+++|+++|++||.+. .|+||||+|+||||+||| .+
T Consensus 608 ~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~-------- 667 (771)
T 1u04_A 608 MVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN-------- 667 (771)
T ss_dssp HHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC--------
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeee-cC--------
Confidence 99999998 588999999999997 6789999999999875 589999999999999999 21
Q ss_pred CCCCCcceeeecCccccCCcceEEEeecC--CccccccceeE--EEEecCCCCC----HHHHHHHHHHhhhhccccCC-C
Q 001950 855 RSGNILPGTVVDSKICHPTEFDFYLCSHA--GIQGTSRPAHY--HVLWDENNFT----ADGIQSLTNNLCYTYARCTR-S 925 (992)
Q Consensus 855 ~~~N~~pGTVVD~~It~p~~~dFyL~Sh~--~~qGTarPthY--~VL~de~~~~----~d~Lq~lTy~LC~~y~r~t~-s 925 (992)
.+|||||| . ||||+||. +.|||++|+|| +|++|+++++ +|+||+|||+|||+|+||++ +
T Consensus 668 ----~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~s 735 (771)
T 1u04_A 668 ----MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISAD 735 (771)
T ss_dssp ----SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCC
T ss_pred ----CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCC
Confidence 25899993 3 99999995 56999999999 9999999999 99999999999999999999 9
Q ss_pred ccccchhhhHHHHHHHhhhhcCc
Q 001950 926 VSVVPPAYYAHLAAFRARFYMEP 948 (992)
Q Consensus 926 VsiPaP~yYA~l~a~Rar~~l~~ 948 (992)
||+||||||||++|++++.++..
T Consensus 736 vrvPAP~~YAhklA~lvgq~~~~ 758 (771)
T 1u04_A 736 MRLPAPVHYAHKFANAIRNEWKI 758 (771)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCchHHHHHHHHHHHHhhhcc
Confidence 99999999999999999887654
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=6.9e-83 Score=727.69 Aligned_cols=365 Identities=29% Similarity=0.488 Sum_probs=291.7
Q ss_pred cccceeec-CceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCc---ccccCCChhHHHHHHHHHHHhhcc
Q 001950 542 MMNKKMIN-GMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPV---IPIHNARPDQVEKALKHVYHSSMS 617 (992)
Q Consensus 542 l~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~---~~~~~~~~~~~~~~l~~~~~~~~~ 617 (992)
|++++|++ ++++++|+++++....+...++.|++.|.+.|+.+||.++.+.. +.......+.+ .+++....
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc---
Confidence 56789999 78999999999965334567899999999999999999987531 11112222222 22333211
Q ss_pred cccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchh--hHHHHHHHHHhhcCCcccccccccccC
Q 001950 618 KTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQ--YLANVSLKINVKMGGRNTVLLDAISCR 695 (992)
Q Consensus 618 ~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~n~~l~~~~~~~ 695 (992)
.+++|||||||+++.++|+.||++||+++||+||||..+++.|.++| |+.||+||||+||||+||.|.+ .
T Consensus 77 ----~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~ 148 (388)
T 2yha_A 77 ----SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----P 148 (388)
T ss_dssp ----HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----C
T ss_pred ----CCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----c
Confidence 36899999999988889999999999999999999999999888888 9999999999999999999975 2
Q ss_pred CCcccCCCeEEEEEeecCCC---CC--CCCCCceEEEEeccCCCCcceeeeEEEeec-cchhhhhhhhccccCCCcCcch
Q 001950 696 IPLVSDIPTIIFGADVTHPE---NG--EDSSPSIAAVVASQDWPEVTKYAGLVCAQA-HRQELIQDLYKTWHDPVRGTVS 769 (992)
Q Consensus 696 ~p~~~~~~tmiiG~DV~Hp~---~~--~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~d~~~~~~~ 769 (992)
+|++.+.+|||||+||+||+ || ....|||||||||+|. ..++|.+.++.|. +++|+|++|
T Consensus 149 ~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l------------- 214 (388)
T 2yha_A 149 IPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQF------------- 214 (388)
T ss_dssp CHHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHH-------------
T ss_pred ccccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcCC-CCCEEEEEEEEcCCCcccHHHHH-------------
Confidence 35555679999999999998 77 4467999999999995 8999999999999 999999999
Q ss_pred hHHHHHHHHHHHH---HcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEeeccccccccc
Q 001950 770 GGMIRDLLISFRK---ATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY-QPPVTFIIVQKRHHTRLFAN 845 (992)
Q Consensus 770 ~~~i~~~L~~f~~---~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y-~P~it~Ivv~KrhhtRff~~ 845 (992)
++|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++++| +|+||||||+||
T Consensus 215 ~~~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr-------- 286 (388)
T 2yha_A 215 TDKFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG-------- 286 (388)
T ss_dssp HHHHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------
T ss_pred HHHHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc--------
Confidence 9999999999999 8899999999999999999999999999999999999998888 899999999999
Q ss_pred CCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCC------CCCHHHHHHHHHHhhhhc
Q 001950 846 NHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN------NFTADGIQSLTNNLCYTY 919 (992)
Q Consensus 846 ~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~------~~~~d~Lq~lTy~LC~~y 919 (992)
||||||+||+||+ ++++|+||+|||+|||+|
T Consensus 287 -------------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y 323 (388)
T 2yha_A 287 -------------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLF 323 (388)
T ss_dssp -----------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC-
T ss_pred -------------------------------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999998 999999999999999999
Q ss_pred cccCCCccccchhhhHHHHHHHhhhhcCccccCCCCCCCCCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001950 920 ARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 920 ~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
+|||++||||+|+||||++|+|||+||.+..++.++++++++ . +. .. . ..++.+|++|+++||||
T Consensus 324 ~r~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~-~-~~--~~--~--~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 324 GRATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKT-D-DF--AR--W--GNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp ---------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCH-H-HH--HH--H--HHHTCCCGGGTTSCTTC
T ss_pred hcccCCCCcCcHHHHHHHHHHHHHHHhhhhccCCCcccccCC-C-cc--cc--c--ccccccCHHhcCCceeC
Confidence 999999999999999999999999999875533222221110 0 00 00 0 11457999999999997
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1e-80 Score=738.56 Aligned_cols=637 Identities=16% Similarity=0.138 Sum_probs=463.4
Q ss_pred eEEEEeeEEEeec---CCCceeeEeEEEccCCCChHHHHHHHHHHHHHhcccccCCCcceeeCcceEEEecccCCC-cee
Q 001950 142 KCIVKANHFFAEL---PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFV-WKE 217 (992)
Q Consensus 142 ~i~l~tN~f~i~~---~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~k~lys~~~Lp~~-~~~ 217 (992)
++.|.-|-|.++- .+...|.|+|.++|.....+..+ ++..+..+ .+. ++--.+..|.|..+ |.. ..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~~ 76 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG--VTVRMGDGLASWSP-PEVLVLE 76 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS--SEEEETTEEEESSC-TTTSCCE
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHH-HHHHHHHH-----hCC--eEEeecCceecccC-chhhhcc
Confidence 5789999999974 56789999999998755444443 33344333 222 22223456777655 432 122
Q ss_pred EEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhhh------cCCcccccccc
Q 001950 218 FKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS------TKRYCPIGRSF 291 (992)
Q Consensus 218 f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~~------~~~~~~vGrsF 291 (992)
-.|. ...+...|++.-.=...+|.. ...--++|+.+-|... .++...-|.-.
T Consensus 77 ~~~~---------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (685)
T 3ho1_A 77 GTLA---------RMGQTYAYRLYPKGRRPLDPK-------------DPGERSVLSALARRLLQERLRRLEGVWVEGLAV 134 (685)
T ss_dssp EEEE---------CSSCEEEEEEEEEEECCCCTT-------------SHHHHHHHHHHHHHHHHHHHHTCSSSEEETTEE
T ss_pred chhc---------cccCCcceeeeecccccCCCC-------------ChHHHHHHHHHHHHHHHHHHHhhhceEEccEEE
Confidence 2221 112334465555544555542 2334444444444321 12222223222
Q ss_pred CCCCCCCCccCCCCEEEEeeeeeeeeecc-ceeEeeeecccccccccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhc
Q 001950 292 FSPSIRTPQRLGDGLESWCGFYQSIRPTQ-MGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALR 370 (992)
Q Consensus 292 F~~~~~~~~~lg~Gle~w~Gf~~SvR~~~-~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~Lk 370 (992)
+..+ ..-|.|+|+.+|+-..|.++. ++++|.||..|. |+.+.++.+|+.+... |-
T Consensus 135 ~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~~-------------------~~ 190 (685)
T 3ho1_A 135 YRRE----HARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGHP-------------------LP 190 (685)
T ss_dssp EEEE----EEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSCC-------------------CC
T ss_pred Eeec----CCCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCCC-------------------cc
Confidence 2221 123789999999999999997 899999999988 7999999999987322 12
Q ss_pred ceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHHHHhCccccCCCCCceeeCCC----Cc-----cc
Q 001950 371 GVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ----KK-----AN 441 (992)
Q Consensus 371 GlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~----~k-----~~ 441 (992)
..|.++|. .++|+|.+|+ +.+++..|- + + .+|++|||+++|.+ ++-++|+|+...+ .+ .+
T Consensus 191 -~~v~~~y~---~~~~~~~~~~-~~~p~~~~l-~--~-~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~ 259 (685)
T 3ho1_A 191 -KRVRNAYD---RRTWELLRLG-EEDPKELPL-P--G-GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTG 259 (685)
T ss_dssp -SEEEESSS---CCEECCCEEE-CCCTTCC----------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETT
T ss_pred -HHHhhhcc---cceEEEeecc-cCCchheec-C--C-CccHHHHHhhcccc--cccCCceEEEEeccccCCCcceeeee
Confidence 37888886 3479999999 566777675 2 2 36999999999887 8889998876432 12 36
Q ss_pred cccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHHHHhccCCccccccccceEEcccceEEEeEEcCCCc
Q 001950 442 YLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPW 521 (992)
Q Consensus 442 ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~aRvLp~P~ 521 (992)
||-|||| + ..|++.+.. .+++.+|++|++++.++++ +++++|||. +++|++|+||+||||+
T Consensus 260 ~l~p~l~-m-------~~l~~~~~~---~~trlsP~~R~~~l~~~~~-------~i~~~~Gl~-~~~~i~v~gRvLppp~ 320 (685)
T 3ho1_A 260 LLVPVLT-L-------EDLHEEEGS---LALSLPWEERRRRTREIAS-------WIGRRLGLG-TPEAVRAQAYRLSIPK 320 (685)
T ss_dssp SEEEECC-T-------TTTSSCSSC---CCCCCCHHHHHHHHHHHHH-------HHHHTTCSC-CCEEEEEEEEECCCCC
T ss_pred eechHhH-H-------HHHhhhhhh---ccccCCHHHHHHHHHHHHH-------HHHHhcCCC-CCCcceEEEEEcCHHH
Confidence 8999999 3 256665443 7899999999999999865 357889998 9999999999999999
Q ss_pred eeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCCh
Q 001950 522 LKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARP 601 (992)
Q Consensus 522 I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~ 601 (992)
| +++. .+ .+.|++.+.+|+.++.. .|+++++.+. ...+++|++.|.+.|+.+||+|..+.......++
T Consensus 321 I-~g~~----~~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d~- 388 (685)
T 3ho1_A 321 L-MGRR----AV---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRLHTLHAHPSQG- 388 (685)
T ss_dssp E-ESSS----BC---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGGT-
T ss_pred h-cCCC----Cc---CCchhhccCcceeccCc-eEEEEeccCc--hHHHHHHHHHHHHHHHhCCcEeccceeecCCCch-
Confidence 9 6642 11 34577777788887765 7999998763 2456799999999999999999852111111111
Q ss_pred hHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhc
Q 001950 602 DQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKM 681 (992)
Q Consensus 602 ~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~Kl 681 (992)
..+...+++..+ .++|+||||+|++..+.|+.||++| .+.||+||||. +++.+...+++.||+||||+||
T Consensus 389 ~~~~~~l~~~~~--------~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKL 458 (685)
T 3ho1_A 389 LAFREALRKAKE--------EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKA 458 (685)
T ss_dssp HHHHHHHHHHHH--------TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh--------cCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHh
Confidence 134444443322 4789999999999888999999986 79999999999 8887777899999999999999
Q ss_pred CCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccc
Q 001950 682 GGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTW 760 (992)
Q Consensus 682 GG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~ 760 (992)
||+||.|+. | ..++||||+||+|++. .++++++++++. ...++|. ....|.+.++.+++|
T Consensus 459 GG~pW~L~~------P---~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~~-~~~~Q~~e~l~~~~L---- 519 (685)
T 3ho1_A 459 GLQVVALSG------A---YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLWT-LPEAQAGERIPQEVV---- 519 (685)
T ss_dssp TCCCCEECS------C---CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEEE-CCCCCCSCCCHHHHH----
T ss_pred CCeeEEecC------C---CCCeEEEEEEEEcCCC-----CccceEEEEEECCCCEEEeE-EEEccCCcEecHHHH----
Confidence 999999864 3 2579999999999862 244444444432 1344543 355665544456678
Q ss_pred cCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCC-ChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccc
Q 001950 761 HDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGV-SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHH 839 (992)
Q Consensus 761 ~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGV-SEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Krhh 839 (992)
.+|+.++|..|++.++.+|+||||||||| +||||. +|++||+++ .+++|||+|+||||
T Consensus 520 ---------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~ 578 (685)
T 3ho1_A 520 ---------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGG 578 (685)
T ss_dssp ---------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCC
T ss_pred ---------HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHH--------HHHHHHHhc----CCCEEEEEEEecCC
Confidence 89999999999999999999999999999 887664 566888876 47899999999999
Q ss_pred ccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeec--CCccccccceeEEEEecCCCCCHHHHHHHHHHhhh
Q 001950 840 TRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSH--AGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 917 (992)
Q Consensus 840 tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh--~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~ 917 (992)
+|||+.+ .++.+||+|+ ..+||||++| .+.|||+||+||+ +|++++++|+||+|||+|||
T Consensus 579 tRfF~~n----------~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lch 640 (685)
T 3ho1_A 579 GRVYPVQ----------GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTR 640 (685)
T ss_dssp CCEEESS----------SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGG
T ss_pred ceEecCC----------CCCCCeEEEe------CCCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHH
Confidence 9999964 2456677664 3456666655 4689999999998 99999999999999999999
Q ss_pred hccccC-CCccccchhhhHHHHH-HHhh
Q 001950 918 TYARCT-RSVSVVPPAYYAHLAA-FRAR 943 (992)
Q Consensus 918 ~y~r~t-~sVsiPaP~yYA~l~a-~Rar 943 (992)
+|+||| ++||+|+||||||++| .|||
T Consensus 641 my~nst~~svsvPAP~~YAhklAk~~~r 668 (685)
T 3ho1_A 641 LYPASGFAFPRLPAPLHLADRLVKEVGR 668 (685)
T ss_dssp CCSSCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCcChHHHHHHHHHHHHHH
Confidence 999998 9999999999999999 6666
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=2e-54 Score=499.61 Aligned_cols=363 Identities=14% Similarity=0.068 Sum_probs=252.5
Q ss_pred EcCCCceecc--CCCCcc---ccCCCCcccccccceeecCcee--ceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCccc
Q 001950 516 ILPAPWLKYH--ENGKEK---DCLPQVGQWNMMNKKMINGMTV--SRWACINFSRSVQESVARGFCNELAQMCQVSGMEF 588 (992)
Q Consensus 516 vLp~P~I~y~--~~~~~~---~~~p~~G~Wnl~~~kf~~~~~i--~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i 588 (992)
.|..|.+.|+ ++.+.. ...|..| +.+...+..... .+|++|+..+.. ..++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~--~~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFS--SLINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTC--HHHHHHHHHHHHHH-HHTTCC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcccH--HHHHHHHHhhhhcC-CCceee
Confidence 4567778888 432200 1122222 334444444333 789999987742 23444444433221 234444
Q ss_pred CCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEe--------cCCCCchhhhHHHHhhhccCceeeeEeec
Q 001950 589 NPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAIL--------PDNNGSLYGDLKRICETDLGIISQCCLTK 660 (992)
Q Consensus 589 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vil--------p~~~~~~Y~~IK~~~~~~~GI~TQci~~~ 660 (992)
.... .+.+.+.+++++..+ .++|++|||+ |+++...| .+|+ ++.+.||+||||..+
T Consensus 79 ~~~~------~~~~~y~~~i~~~l~--------~~~~lvlvilp~~~~~~~~~~~~~~y-~~K~-~~~~~gvptQ~I~~~ 142 (427)
T 2w42_A 79 HNIN------ISEFIYDSPHFDSIK--------SQVDNAIDTGVDGIMLVLPEYNTPLY-YKLK-SYLINSIPSQFMRYD 142 (427)
T ss_dssp CSCE------EEEEECSSSSHHHHH--------HHHHHHHHHCCSEEEEEESSCCHHHH-HHHH-HHHHTTSCEEEEEGG
T ss_pred cCCc------CChHHHHHHHHHHhc--------CCCCEEEEEEEccccccCCCCCcchH-HHHH-HHhCCCcCcEEEEhh
Confidence 3211 112222222332222 1578899999 66555545 4786 568999999999999
Q ss_pred cccccchh-hHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCccee
Q 001950 661 HVFKISKQ-YLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKY 739 (992)
Q Consensus 661 ~~~k~~~q-~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y 739 (992)
|+.+.+.+ ++.||++|||+||||+||.|... .| ..++||||+||+|++++ +++|++.+.|. +...+
T Consensus 143 tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~---~~~~miiGidv~h~~~~-----~v~g~a~v~~~-~g~~~ 209 (427)
T 2w42_A 143 ILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE---KGSDIIIGTGATRIDNV-----NLFCFAMVFKK-DGTML 209 (427)
T ss_dssp GCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT---SSCSEEEEEEEEESSSS-----EEEEEEEEECT-TSCEE
T ss_pred hcccccchhHHHHHHHHHHHHhCCcceecccC----CC---CCCeEEEEEEEEEcCCC-----cEEEEEEEEcC-CCCEE
Confidence 99865544 48899999999999999999741 12 14699999999998754 55665443342 22334
Q ss_pred eeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHH-HcCCCCc--eEEEEeCCCChhhHHHHHHHHHHHHHH
Q 001950 740 AGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRK-ATGQKPL--RIIFYRDGVSEGQFYQVLLYELDAIRK 816 (992)
Q Consensus 740 ~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~-~~g~~P~--~IIiyRDGVSEgq~~~vl~~Ev~~i~~ 816 (992)
...+..|..++|++++| ++++.++|+.|++ .++.+|+ ||||| ||+.++.++|+++|++
T Consensus 210 ~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~ 270 (427)
T 2w42_A 210 WNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKE 270 (427)
T ss_dssp EEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHH
T ss_pred EEEEEecCChhHHHHHH-------------HHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHH
Confidence 44455666789999999 9999999999999 8999898 66998 8899999999999999
Q ss_pred HHHhhCC----CCCCCEEEEEEeeccc-ccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccc----
Q 001950 817 ACASLEP----NYQPPVTFIIVQKRHH-TRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQG---- 887 (992)
Q Consensus 817 A~~~~~~----~y~P~it~Ivv~Krhh-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qG---- 887 (992)
||.++.. +|+|+||||+|+|||| +|||..+ ..+||+||||||.+ ++|||++|.+.|+
T Consensus 271 a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~--------~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~ 336 (427)
T 2w42_A 271 TVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPN--------NRFHPYEGTKVKLS------SKRYLLTLLQPYLKRNG 336 (427)
T ss_dssp HHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC-------
T ss_pred HHHHhccccccCCCCCEEEEEEEccccceeeecCC--------CCCCCCCceEEEcC------CCeEEEEEEeeeccccc
Confidence 9999864 7899999999999999 7888543 13699999999983 6677777777776
Q ss_pred --c---ccceeEEEEec----CCCC-CHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhc
Q 001950 888 --T---SRPAHYHVLWD----ENNF-TADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM 946 (992)
Q Consensus 888 --T---arPthY~VL~d----e~~~-~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l 946 (992)
+ ++||||+|++| |+++ ++|+||++||+|||+|+|||++||+|+||||||++|+++....
T Consensus 337 ~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~ 405 (427)
T 2w42_A 337 LEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVN 405 (427)
T ss_dssp --CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEEEecCCcCcccCCCHHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhh
Confidence 4 33999999995 4555 5899999999999999999999999999999999999998643
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.95 E-value=7.9e-28 Score=238.13 Aligned_cols=145 Identities=76% Similarity=1.244 Sum_probs=129.2
Q ss_pred cceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccc-cCC
Q 001950 544 NKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKT-KGK 622 (992)
Q Consensus 544 ~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 622 (992)
+++|++++++++|++|++++..+++.+++|++.|.+.|+.+||.+++++.+.+...+++++++.|+++++++..+. ++.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 5789999999999999998766667899999999999999999999888776666778899999998887654332 235
Q ss_pred CceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCccccc
Q 001950 623 ELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL 688 (992)
Q Consensus 623 ~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 688 (992)
+++|||||||+++.++|+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 799999999999888999999999999999999999999998899999999999999999999865
No 10
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.94 E-value=1e-27 Score=235.71 Aligned_cols=138 Identities=28% Similarity=0.505 Sum_probs=96.8
Q ss_pred cccccHHHHHHHHhcCC-ccCCCCChhHHHHHHHHhcceEEEEeecC---CccceEEEecccCCCCCCeeeecCCCCcce
Q 001950 335 IEPLPVIEFVAQLLGKD-VLSRTLSDSDRVKIKKALRGVKVEVTHRG---TVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410 (992)
Q Consensus 335 ~~~~~lld~i~~~~~~~-~~~r~l~~~~~~~l~~~LkGlkV~~~~~~---~~~r~~rI~gi~~~~a~~~~F~~~~~g~~i 410 (992)
|++++|+|||+++++.. ...+...+.++.+++++|+|++|.++|++ +.+++|+|.||++.++++.+|+.+ |..+
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~--g~~i 79 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 79 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS--SCEE
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcC--CCEE
Confidence 57899999999998432 11122346778899999999999999954 246789999999999999999853 4567
Q ss_pred eHHHHHHHHhCccccCCCCCceeeCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCC
Q 001950 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475 (992)
Q Consensus 411 SV~eYF~~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~ 475 (992)
||+|||+++ |++|+||+||||++|++.+++|||||||.|++||+++++|++.|+++|||+||++
T Consensus 80 sv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 80 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp EHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred EHHHHHHHc-CCCCCCCCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhcC
Confidence 999999998 9999999999999999889999999999999999999999999999999999863
No 11
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=3.2e-27 Score=231.37 Aligned_cols=138 Identities=51% Similarity=1.003 Sum_probs=123.3
Q ss_pred cceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccCCC
Q 001950 544 NKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKE 623 (992)
Q Consensus 544 ~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 623 (992)
+++|++++++++|++++|++..+.+.+++|++.|.+.|+.+||.++++|.+.....++++++..|+.+++.+ .+
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~------~~ 75 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA------PG 75 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC------TT
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc------CC
Confidence 578999999999999999755567789999999999999999999987766555556788888888887754 36
Q ss_pred ceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCccccc
Q 001950 624 LELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL 688 (992)
Q Consensus 624 ~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 688 (992)
++|||||||+++.+ |+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 76 ~qlv~~ilp~~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 76 LQLLIVILPDVTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp CSEEEEECCSSSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CcEEEEEECCCCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 89999999998888 99999999999999999999999998899999999999999999999865
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.93 E-value=1.2e-25 Score=220.16 Aligned_cols=135 Identities=32% Similarity=0.570 Sum_probs=116.3
Q ss_pred cceeecCceeceeEEEEeCCC--cchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccC
Q 001950 544 NKKMINGMTVSRWACINFSRS--VQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKG 621 (992)
Q Consensus 544 ~~kf~~~~~i~~W~vv~~~~~--~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 621 (992)
+++|++|+++++|++++|+.. .+++.+++|++.|.+.|+.+||.++.+|.+.....++++++..++.+.+..
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~------ 75 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY------ 75 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC------
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC------
Confidence 678999999999999999742 467889999999999999999999877765444555677888787765431
Q ss_pred CCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCcc
Q 001950 622 KELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRN 685 (992)
Q Consensus 622 ~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n 685 (992)
.+++|||||||+ +.++|+.||++||+++||+||||..+++.|.++||++||+||||+||||+|
T Consensus 76 ~~~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 76 AGLQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp TTCCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCCcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 368999999996 578999999999999999999999999998899999999999999999987
No 13
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.92 E-value=6.4e-26 Score=225.22 Aligned_cols=144 Identities=31% Similarity=0.513 Sum_probs=108.3
Q ss_pred cceeecCceeceeEEEEeCCCcc-hHHHHHHHHHHHHHHHhcCcccCCCCcccc----cCCChhHHHHHHHHHHHhhccc
Q 001950 544 NKKMINGMTVSRWACINFSRSVQ-ESVARGFCNELAQMCQVSGMEFNPEPVIPI----HNARPDQVEKALKHVYHSSMSK 618 (992)
Q Consensus 544 ~~kf~~~~~i~~W~vv~~~~~~~-~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~----~~~~~~~~~~~l~~~~~~~~~~ 618 (992)
+++|++++++++|+++++++... ...+++|++.|.+.|+.+||.+++|.++.. ...+++++++.|+.+++++...
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 57899999999999999986421 136789999999999999999986443321 1346778888898888765543
Q ss_pred ccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCccccc
Q 001950 619 TKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVL 688 (992)
Q Consensus 619 ~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 688 (992)
..+..++|||||||+++. .|+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~~~~-~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSRKDD-GYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESSCCT-HHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECCCCc-cHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 333468999999999875 599999999999999999999999999999999999999999999999865
No 14
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.90 E-value=4.5e-24 Score=203.79 Aligned_cols=119 Identities=31% Similarity=0.562 Sum_probs=98.0
Q ss_pred ccccHHHHHHHHhcCC--ccCCCCChhHHHHHHHHhcceEEEEeecC---CccceEEEecccCCCCCCeeeecCCCCcce
Q 001950 336 EPLPVIEFVAQLLGKD--VLSRTLSDSDRVKIKKALRGVKVEVTHRG---TVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410 (992)
Q Consensus 336 ~~~~lld~i~~~~~~~--~~~r~l~~~~~~~l~~~LkGlkV~~~~~~---~~~r~~rI~gi~~~~a~~~~F~~~~~g~~i 410 (992)
+++||+|||++++... +..+.| +.++.+++++|+||+|.++|++ +.+++|+|.||++.++++.+|+++ |..+
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l-~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~--g~~i 77 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNL-DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--GKKV 77 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCG-GGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS--SSEE
T ss_pred CCccHHHHHHHHhhhcccccccCC-HHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC--CcEE
Confidence 4689999999997532 223556 5678899999999999999963 346789999999999999999863 5678
Q ss_pred eHHHHHHHHhCccccCCCCCceeeCCCCccccccccceeecCCccccc
Q 001950 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTK 458 (992)
Q Consensus 411 SV~eYF~~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~ 458 (992)
||+|||+++ |++|+||+||||++|++.+++|||||||.|+|||++++
T Consensus 78 sV~~Yf~~~-~~~l~~p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 78 TIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp EHHHHHHTT-TCCCSCSSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred EHHHHHHHc-CCcccCCCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 999999997 99999999999999998899999999999999999863
No 15
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.89 E-value=1e-23 Score=208.77 Aligned_cols=134 Identities=20% Similarity=0.318 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHH
Q 001950 336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEY 415 (992)
Q Consensus 336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eY 415 (992)
++++|+|+|.++++.. ..+..+.++++.|+|+.|.++|+ ++.|+|.+|++++++.++|++.+ |..+||+||
T Consensus 1 r~~tvld~~~~~~~~~-----~~~~~~~~~~~~l~g~~V~t~y~---nr~yrI~~i~~~~~p~~~F~~~~-g~~~T~~eY 71 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQT-----EEHKFQEQVSKELIGLIVLTKYN---NKTYRVDDIDWDQNPKSTFKKAD-GSEVSFLEY 71 (150)
T ss_dssp CCCBHHHHHHHHHHHS-----CHHHHHHHHHHHHTTCEEEETTT---TEEEECCEEETTCCTTCCCCSSS-SCCCCHHHH
T ss_pred CCccHHHHHHHHHccc-----cchHHHHHHHHHhCCcEEEEeeC---CceEEeeecCCCCCccCeeecCC-CceeeHHHH
Confidence 4689999999988731 22456889999999999999995 36799999999999999998654 455799999
Q ss_pred HHHHhCccccCCCCCceeeCCCC---------ccccccccceeecCCcccccCCCHHHHHH------HHhhhcCCchhhH
Q 001950 416 FQEMYGFTIQHTHLPCLQVGNQK---------KANYLPMEACKIVEGQRYTKRLNERQITA------LLKVTCQRPRDRE 480 (992)
Q Consensus 416 F~~~Y~i~L~~p~lPll~~g~~~---------k~~ylP~Elc~I~~gQr~~~kL~~~q~~~------mik~a~~~P~~R~ 480 (992)
|+++|||+|+||+||||++|.+. +++|||||||.|+ +|+++|+++ |+++|+.+|.+|.
T Consensus 72 f~~~Y~i~i~~~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~-------~L~d~~rs~~~~mk~l~~~t~~~P~~R~ 144 (150)
T 2xfm_A 72 YRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRNDFNVMKDLAVHTRLTPEQRQ 144 (150)
T ss_dssp HHTTCCCCCCCSSSCEEEECSSCTTCCSSCSSCCEEECGGGEEEC-------STTC------------------------
T ss_pred HHHHcCCccCCCCCCeEEecccccccccccccceEEecHHHhccC-------CCCHHHHhhHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999998642 6799999999997 699999875 8899999999999
Q ss_pred HHHHH
Q 001950 481 NDILQ 485 (992)
Q Consensus 481 ~~I~~ 485 (992)
+.|.+
T Consensus 145 ~~i~~ 149 (150)
T 2xfm_A 145 REVGR 149 (150)
T ss_dssp -----
T ss_pred HHHhc
Confidence 98865
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.85 E-value=6.1e-22 Score=194.36 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=89.8
Q ss_pred cccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHH
Q 001950 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (992)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF 416 (992)
..+|+|+|.++.... ...++.++++.|+|+.|.+.|+ ++.|+|.||+++.++..+|+..+ |..+||+|||
T Consensus 2 ~~tvld~m~~~~~~~------~~~~~~~~~k~l~g~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~d-g~~iT~~eYf 71 (148)
T 3qir_A 2 NDCVLDVMHAIYQQN------KEHFQDECTKLLVGNIVITRYN---NRTYRIDDVDWNKTPKDSFTMSD-GKEITFLEYY 71 (148)
T ss_dssp CCCHHHHHHHHHHHH------HHHHHHHHHHHHTTCEEEETTT---CCEEECCEEETTCCTTSEEECTT-SCEEEHHHHH
T ss_pred cchHHHHHHHHHhhC------cHHHHHHHHHHcCCCEEEEccC---CcEEEEeeecCCCCcCccccCCC-CCcccHHHHH
Confidence 468999999876521 1457899999999999999885 35799999999999999998654 5667999999
Q ss_pred HHHhCccccCCCCCceeeCCCC----------ccccccccceeecCCcccccCCCHHHHH------HHHhhhcCCchhhH
Q 001950 417 QEMYGFTIQHTHLPCLQVGNQK----------KANYLPMEACKIVEGQRYTKRLNERQIT------ALLKVTCQRPRDRE 480 (992)
Q Consensus 417 ~~~Y~i~L~~p~lPll~~g~~~----------k~~ylP~Elc~I~~gQr~~~kL~~~q~~------~mik~a~~~P~~R~ 480 (992)
+++|||+|+||+||||+++.+. +++|||||||.++ +|+++|++ +|++++++.|.+|.
T Consensus 72 ~~kY~i~I~~~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~lt-------gLtd~~r~d~~~mk~l~~~tr~~P~~R~ 144 (148)
T 3qir_A 72 SKNYGITVKEEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMT-------GIPEKMKKDFRAMKDLAQQINLSPKQHH 144 (148)
T ss_dssp HHHHCCCCSCTTCCEEEECCTTCCCC---CCSCCEEECGGGEECC-----------------------------------
T ss_pred HHHcCCeecCCCCceEEeecccccCCCCCCccceeeecHHHhhhc-------CCCHHHHhhhHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999998643 5799999999997 58888766 79999999999998
Q ss_pred HHH
Q 001950 481 NDI 483 (992)
Q Consensus 481 ~~I 483 (992)
..|
T Consensus 145 ~~l 147 (148)
T 3qir_A 145 SAL 147 (148)
T ss_dssp ---
T ss_pred Hhh
Confidence 865
No 17
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.80 E-value=4.2e-20 Score=219.96 Aligned_cols=130 Identities=29% Similarity=0.538 Sum_probs=101.8
Q ss_pred ecccccccccccHHHHHHHHhcCCccCCCCC--hhHHHHHHHHhcceEEEEeecCC---ccceEEEecccCCCCCCeeee
Q 001950 328 DMASAAFIEPLPVIEFVAQLLGKDVLSRTLS--DSDRVKIKKALRGVKVEVTHRGT---VRRKYRVSGLTSQPTRELVFP 402 (992)
Q Consensus 328 Dvs~~aF~~~~~lld~i~~~~~~~~~~r~l~--~~~~~~l~~~LkGlkV~~~~~~~---~~r~~rI~gi~~~~a~~~~F~ 402 (992)
+.....||+++||+|++.+++...+. +.++ +..+.++.++||||+|+++|+++ .+|.|+|.||+..++.+.+|+
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~ 453 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKI-NNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE 453 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCC-CTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhcccc-CCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEec
Confidence 34456799999999999999843221 2232 34456699999999999999764 477899999999899999998
Q ss_pred cCCCCcceeHHHHHHHHhCccccCCCCCceeeCCCCccccccccceeecCCcccccCCC
Q 001950 403 VDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLN 461 (992)
Q Consensus 403 ~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~ 461 (992)
++ +++|||+|||+ +|||+|+||+||||++|++++++|||||||.|+|||||++||+
T Consensus 454 ~~--~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 454 HD--GKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp ET--TEEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred cC--CeEEEHHHHHH-HcCCcccCCCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 64 46789999999 8999999999999999998899999999999999999999885
No 18
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.79 E-value=2.3e-19 Score=170.63 Aligned_cols=114 Identities=19% Similarity=0.316 Sum_probs=91.4
Q ss_pred ccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHH
Q 001950 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (992)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~ 417 (992)
.+|+|+|.++.... -....+.++++.|+|+.|.+.|+ ++.|+|.+|+++.++..+|+..+ |..+||+|||+
T Consensus 2 ~tvld~~~~~~~~~-----~~~~~~~~~~k~l~G~~V~t~yn---nk~YrI~~I~~~~~p~s~F~~~d-g~~~T~~eYyk 72 (124)
T 3o7v_X 2 ETVLDFMFNFYHQT-----EEHKFQEQVSKELIGLVVLTKYN---NKTYRVDDIDWDQNPKSTFKKAD-GSEVSFLEYYR 72 (124)
T ss_dssp CBHHHHHHHSCCCS-----SHHHHHHHHHHHHTTCEEEETTS---SCEEECCEEETTCCTTCEEECTT-SCEEEHHHHHH
T ss_pred ccHHHHHHHHHHhc-----ccHHHHHHHHHHcCCCEEEEeeC---CeEEEEeeeCCCCCccCcccCCC-CCeeeHHHHHH
Confidence 58999999875431 12457889999999999999996 35799999999999999998644 56679999999
Q ss_pred HHhCccccCCCCCceeeCCCC---------ccccccccceeecCCcccccCCCHHHHHH
Q 001950 418 EMYGFTIQHTHLPCLQVGNQK---------KANYLPMEACKIVEGQRYTKRLNERQITA 467 (992)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~~---------k~~ylP~Elc~I~~gQr~~~kL~~~q~~~ 467 (992)
++|||+|+||+||||+++.+. +++|||||||.++ +|+++++++
T Consensus 73 ~kY~i~I~~~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~lt-------Gltd~~r~d 124 (124)
T 3o7v_X 73 KQYNQEITDLKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRND 124 (124)
T ss_dssp HHHCCCCCCSSCCEEEECCC----------CCEEECGGGEECC-------CCC------
T ss_pred HHhCceecCCCcceEEEeeecccCCCCCCcceEEechhheecc-------CCChHhccC
Confidence 999999999999999998543 5799999999985 799988753
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.35 E-value=1.8e-07 Score=114.36 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=69.6
Q ss_pred HHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHHHHhCccccCCCCCceeeCCC------
Q 001950 364 KIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ------ 437 (992)
Q Consensus 364 ~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~------ 437 (992)
.+.+.|+|..|.+.|++ ++.|+|.+|+++.++.++|+.. +..+|+.|||+++||++|++++||+|.+...
T Consensus 151 ~~~~~l~g~vV~t~ynn--~r~Y~i~~id~d~~P~S~F~~~--~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~ 226 (756)
T 2qvw_A 151 TLSASLHGRMVATPEIS--WSLYVVLGIDSTQTSLSYFTRA--NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDH 226 (756)
T ss_dssp -CTTTSTTCEEEETTTT--TEEEEEEEEEEEEETTSEEEET--TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTC
T ss_pred hhHHHhCCCEEecCCCC--ceEEEEEEecCCCCCCCcCCCC--CCCCCHHHHHHHHcCcccccCCCCeEEEEeccccccc
Confidence 45678999999988853 3679999999988899999843 2557999999999999999999999988531
Q ss_pred ------------Cccccccccceeec
Q 001950 438 ------------KKANYLPMEACKIV 451 (992)
Q Consensus 438 ------------~k~~ylP~Elc~I~ 451 (992)
.+.++||||+|.+.
T Consensus 227 r~~~~~~~~~~~~~~v~L~PELC~vt 252 (756)
T 2qvw_A 227 QIPAPGSWDDLAPKLRFLPPELCLLL 252 (756)
T ss_dssp CCCSTTC-CCSCSSCEEECTTTCEEC
T ss_pred ccccccccccCCccceeeCHHHheee
Confidence 12479999999986
No 20
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=76.47 E-value=14 Score=35.88 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=58.2
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHH
Q 001950 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~ 781 (992)
|.-|=++|+||-.. .-+|+++|.-.|. |.-..|.- +.+.. +-.+|+ .+|+|.|..-+
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~g~p~K~~YRr-f~I~~---~g~DDy--------------a~M~Evl~RR~ 74 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDDY--------------ESIRTVVKRRY 74 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEETTEECGGGCEE-EEC--------CHH--------------HHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eecCC---CCCCHH--------------HHHHHHHHHHh
Confidence 56888999999753 3478888887774 22222332 22322 112454 56677775554
Q ss_pred HHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001950 782 KATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 782 ~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
+.- .+|+-|+| || +.||+. +.++++.+++- .+.+|-+.|+ ..++|.
T Consensus 75 ~r~-~~PDLilI--DG-GkgQl~--------aA~~vl~elg~----~i~v~glAK~-~e~l~~ 120 (159)
T 2nrr_A 75 SKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK-EETVVF 120 (159)
T ss_dssp TTS-CCCSEEEE--SS-CHHHHH--------HHHHHHHHTTC----CCCEEEEC-----CEEE
T ss_pred ccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CccEEEEEcC-CcEEEe
Confidence 332 68988777 77 678875 44567777643 3568888887 344443
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=60.34 E-value=31 Score=35.44 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=60.2
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHH
Q 001950 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~ 781 (992)
|.-|=++|+||-.. .-+|+++|.-.|. |.-..|.- +.+.. +-.+|+ .+|+|.|..-+
T Consensus 22 p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YRr-f~i~~---~g~DDy--------------a~m~Evl~RR~ 79 (220)
T 2nrt_A 22 PYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDDY--------------ESIRTVVKRRY 79 (220)
T ss_dssp CCEEEEEEEEEETT----TEEEEEEEEEETTEECGGGCEE-EEEEC---SSCCHH--------------HHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eeCCC---CCCCHH--------------HHHHHHHHHHh
Confidence 56788999999653 3478888887774 22223332 23322 112454 56677775554
Q ss_pred HHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001950 782 KATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKR 837 (992)
Q Consensus 782 ~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Kr 837 (992)
..- .+|+-|+| || +.||+.. .++++.+++- .+.+|-+.|+
T Consensus 80 ~r~-~~PDLili--DG-GkgQl~~--------a~~vl~~lg~----~i~v~glaK~ 119 (220)
T 2nrt_A 80 SKH-PLPNLLFV--DG-GIGQVNA--------AIEALKEIGK----DCPVVGLAKK 119 (220)
T ss_dssp TTS-CCCSEEEE--SS-SHHHHHH--------HHHHHHHTTC----CCCEEEECTT
T ss_pred ccC-CCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCeEEEEECC
Confidence 332 68988877 77 6788754 4566767643 3568888887
No 22
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=55.65 E-value=4 Score=39.48 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=44.0
Q ss_pred HHHHHHHHH-cCCCCceEEEEeCCCChhhHHHHHHHHHHH----HHHHHHhhCCC----CCCCEEEEEEeeccc
Q 001950 775 DLLISFRKA-TGQKPLRIIFYRDGVSEGQFYQVLLYELDA----IRKACASLEPN----YQPPVTFIIVQKRHH 839 (992)
Q Consensus 775 ~~L~~f~~~-~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~----i~~A~~~~~~~----y~P~it~Ivv~Krhh 839 (992)
+.|..|+++ .+.+|...+||-|+++|.+.......|+.. +++++..++.. |.-.+|+||..+...
T Consensus 46 ~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 46 KELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSS
T ss_pred HHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCc
Confidence 445666654 346787789999999987665555555554 66777777643 677888887655433
No 23
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy, dimerization, image processing, computer-assist molecular sequence DATA; 10.50A {Hepatitis e virus}
Probab=38.18 E-value=41 Score=38.48 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCccCCCCccCCCCCccccCCCCCccCC
Q 001950 50 PHNQTSPPTKNRGRRRGRGGRKSDQNDVFMRPSSRPCTVA 89 (992)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (992)
|+....|+++..||+||+ |+++.|+++.+-.+.+++-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 52 (660)
T 3iyo_A 15 PMLPAPPPGQPSGRRRGR--RSGGSGGGFWGDRVDSQPFA 52 (660)
T ss_pred ccccCCCCCCcccccccc--ccCCCCCCcccCccCCCccc
Confidence 455566677776776643 55666666666666555544
No 24
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=34.64 E-value=1.6e+02 Score=30.23 Aligned_cols=99 Identities=21% Similarity=0.215 Sum_probs=55.6
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHH
Q 001950 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~ 781 (992)
|.-|=++|+||-.. .-+|+++|.-.|. |.-..|.- +.+.. .+-.+|+ .+|+|.|..-+
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YR~-f~i~~--~~g~DDy--------------a~m~Evl~RR~ 72 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLDGKPAKKEYRK-YKVKT--VAGPNDY--------------ETMREVVRRRY 72 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEETTEECGGGCEE-EECCC--CCTTCHH--------------HHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeCCccChhhCce-eecCC--CCCCcHH--------------HHHHHHHHHHH
Confidence 67888999999753 3478888887774 22223332 22221 1111343 34555553332
Q ss_pred H----HcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHH-HhhCCCCCCCEEEEEEeec
Q 001950 782 K----ATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKAC-ASLEPNYQPPVTFIIVQKR 837 (992)
Q Consensus 782 ~----~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~-~~~~~~y~P~it~Ivv~Kr 837 (992)
. ....+|+-|+| || +.||+. +.++++ .+++- .+.+|-+.|.
T Consensus 73 ~r~~~e~~~~PDLili--DG-GkgQl~--------~a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 73 TRVLKEGLPLPDLIII--DG-GKGHLS--------AVRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHHHHTCCCCSEEEE--SS-CHHHHH--------HHHHHHHHTSCC----CCCEEEC---
T ss_pred hhhhcccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHhcCC----CceEEEEEcC
Confidence 2 23368998887 77 678875 445677 46643 3557777784
Done!