Query 001951
Match_columns 992
No_of_seqs 782 out of 5426
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 13:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.8E-34 2.1E-38 356.9 30.2 512 86-755 69-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-33 3.4E-38 355.1 30.7 531 108-829 69-604 (968)
3 PLN03210 Resistant to P. syrin 100.0 4E-30 8.6E-35 322.6 27.0 417 29-600 471-910 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 1.1E-30 2.4E-35 308.7 14.2 232 2-270 432-677 (889)
5 KOG4194 Membrane glycoprotein 99.9 3.8E-24 8.2E-29 225.5 9.5 303 82-450 48-357 (873)
6 KOG0618 Serine/threonine phosp 99.9 3.3E-24 7.2E-29 238.5 -1.4 482 91-702 3-490 (1081)
7 KOG4194 Membrane glycoprotein 99.9 1E-22 2.2E-27 214.8 6.0 334 85-443 77-426 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 1.8E-25 3.9E-30 225.3 -14.7 236 88-362 70-308 (565)
9 PLN03210 Resistant to P. syrin 99.9 1.3E-20 2.9E-25 237.0 25.1 319 84-450 556-886 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 4E-25 8.7E-30 222.8 -14.5 156 108-279 45-201 (565)
11 KOG0444 Cytoskeletal regulator 99.8 3.4E-23 7.3E-28 219.4 -5.5 318 84-447 53-376 (1255)
12 KOG0444 Cytoskeletal regulator 99.8 8.8E-23 1.9E-27 216.3 -6.5 363 85-513 6-378 (1255)
13 KOG0618 Serine/threonine phosp 99.8 2.6E-22 5.7E-27 223.5 -3.9 472 123-779 12-488 (1081)
14 KOG0617 Ras suppressor protein 99.7 2.1E-18 4.5E-23 154.1 -5.1 167 98-280 23-192 (264)
15 KOG0617 Ras suppressor protein 99.6 4.1E-17 9E-22 145.8 -4.7 161 85-261 32-196 (264)
16 KOG4237 Extracellular matrix p 99.5 2.8E-15 6E-20 152.3 -2.7 138 97-237 57-199 (498)
17 PRK15387 E3 ubiquitin-protein 99.5 1.3E-12 2.8E-17 152.4 18.2 236 84-390 220-455 (788)
18 PRK15387 E3 ubiquitin-protein 99.5 9E-13 1.9E-17 153.7 16.9 157 88-278 203-359 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 7E-13 1.5E-17 155.8 13.1 115 110-238 180-295 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.5E-12 3.3E-17 153.0 14.1 176 87-292 179-355 (754)
21 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.9E-18 140.3 -1.6 140 71-212 53-199 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.3 1.6E-12 3.4E-17 155.3 6.8 129 130-272 520-653 (889)
23 KOG4341 F-box protein containi 99.2 1.7E-13 3.6E-18 140.8 -7.3 94 557-656 138-231 (483)
24 KOG4341 F-box protein containi 99.2 2.2E-13 4.8E-18 139.9 -6.7 93 556-654 163-255 (483)
25 PF14580 LRR_9: Leucine-rich r 99.1 7.5E-11 1.6E-15 112.4 4.6 131 130-270 16-149 (175)
26 KOG0532 Leucine-rich repeat (L 99.0 1E-11 2.2E-16 132.6 -5.1 176 87-280 76-253 (722)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.1E-10 4.5E-15 109.4 3.5 137 140-289 4-146 (175)
28 KOG1259 Nischarin, modulator o 99.0 5.7E-11 1.2E-15 116.6 -0.6 182 84-278 212-416 (490)
29 cd00116 LRR_RI Leucine-rich re 99.0 2.1E-10 4.6E-15 125.7 3.7 150 87-238 24-205 (319)
30 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 130.3 -4.3 187 90-294 54-245 (722)
31 cd00116 LRR_RI Leucine-rich re 99.0 4.5E-10 9.8E-15 123.1 4.7 173 87-273 52-262 (319)
32 KOG1259 Nischarin, modulator o 98.8 3.2E-10 7E-15 111.4 -1.9 127 108-239 284-412 (490)
33 COG4886 Leucine-rich repeat (L 98.7 8.3E-09 1.8E-13 116.4 5.1 188 91-294 98-288 (394)
34 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3.1E-13 114.5 5.6 169 130-312 113-286 (394)
35 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.4E-13 104.0 0.8 199 85-290 120-333 (505)
36 KOG3207 Beta-tubulin folding c 98.4 1.4E-07 3.1E-12 98.4 2.8 180 83-273 143-338 (505)
37 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 6.8E-12 71.7 3.5 58 109-167 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.3 4.2E-07 9.1E-12 71.0 3.2 58 179-237 2-60 (61)
39 PLN03150 hypothetical protein; 98.3 1.7E-06 3.7E-11 102.2 9.7 104 134-238 419-527 (623)
40 PRK15386 type III secretion pr 98.3 1.3E-06 2.9E-11 93.7 7.4 58 714-783 52-110 (426)
41 KOG0531 Protein phosphatase 1, 98.2 1E-07 2.2E-12 107.5 -2.9 122 88-212 74-197 (414)
42 PLN03150 hypothetical protein; 98.2 2.1E-06 4.7E-11 101.3 8.0 104 157-272 419-526 (623)
43 PRK15386 type III secretion pr 98.2 4.4E-06 9.4E-11 89.8 9.1 140 734-913 48-188 (426)
44 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.7E-12 104.2 -0.9 106 130-238 92-198 (414)
45 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 59.9 3.4 39 134-172 2-40 (44)
46 KOG2120 SCF ubiquitin ligase, 98.0 2.3E-07 5E-12 91.8 -4.1 115 792-913 257-374 (419)
47 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 58.4 3.9 41 178-219 1-41 (44)
48 KOG1859 Leucine-rich repeat pr 98.0 9.2E-08 2E-12 105.6 -9.1 173 85-273 108-291 (1096)
49 KOG2120 SCF ubiquitin ligase, 97.9 3.9E-07 8.5E-12 90.3 -4.8 85 179-273 186-272 (419)
50 KOG3665 ZYG-1-like serine/thre 97.9 3.4E-06 7.3E-11 99.0 1.8 133 107-239 121-263 (699)
51 KOG1909 Ran GTPase-activating 97.8 2.7E-06 5.9E-11 86.8 -0.7 86 106-191 28-133 (382)
52 KOG1947 Leucine rich repeat pr 97.8 8.7E-07 1.9E-11 103.5 -5.3 96 556-655 187-283 (482)
53 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.2E-10 95.1 3.4 133 133-273 122-262 (699)
54 KOG1909 Ran GTPase-activating 97.8 2.8E-06 6E-11 86.7 -2.0 179 87-273 93-310 (382)
55 KOG1947 Leucine rich repeat pr 97.7 5.4E-06 1.2E-10 96.8 -2.2 38 713-750 268-308 (482)
56 KOG1859 Leucine-rich repeat pr 97.6 8.4E-07 1.8E-11 98.3 -8.5 123 86-212 164-290 (1096)
57 KOG1644 U2-associated snRNP A' 97.6 9.5E-05 2.1E-09 69.8 5.4 127 136-272 22-151 (233)
58 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.6E-09 68.2 5.6 102 108-212 42-151 (233)
59 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 70.0 -3.5 87 131-218 51-139 (177)
60 KOG2982 Uncharacterized conser 97.3 0.00015 3.2E-09 72.5 2.6 33 156-188 71-107 (418)
61 KOG4579 Leucine-rich repeat (L 97.3 2.5E-05 5.4E-10 68.6 -2.6 108 88-196 29-141 (177)
62 KOG2982 Uncharacterized conser 96.9 0.00022 4.8E-09 71.3 -0.0 82 131-212 69-157 (418)
63 KOG2123 Uncharacterized conser 96.7 6.1E-05 1.3E-09 74.4 -5.4 105 155-267 18-123 (388)
64 COG5238 RNA1 Ran GTPase-activa 96.7 0.00074 1.6E-08 66.7 1.7 41 172-212 86-131 (388)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.9E-08 65.3 2.9 105 157-272 44-154 (260)
66 KOG2739 Leucine-rich acidic nu 95.8 0.0057 1.2E-07 60.9 2.6 90 129-219 61-160 (260)
67 PF00560 LRR_1: Leucine Rich R 95.7 0.0035 7.5E-08 36.9 0.4 21 179-199 1-21 (22)
68 PF13306 LRR_5: Leucine rich r 95.6 0.026 5.7E-07 51.9 6.4 55 107-164 11-66 (129)
69 PF13306 LRR_5: Leucine rich r 95.3 0.047 1E-06 50.2 6.9 106 124-235 3-112 (129)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.007 1.5E-07 35.6 0.7 22 134-155 1-22 (22)
71 KOG2123 Uncharacterized conser 95.0 0.0012 2.7E-08 65.5 -4.9 102 107-232 18-123 (388)
72 KOG3864 Uncharacterized conser 94.0 0.0081 1.8E-07 57.3 -1.8 44 556-599 124-167 (221)
73 PF13504 LRR_7: Leucine rich r 93.8 0.037 7.9E-07 30.1 1.3 16 179-194 2-17 (17)
74 KOG3864 Uncharacterized conser 93.7 0.012 2.5E-07 56.3 -1.4 69 787-856 117-187 (221)
75 PF13504 LRR_7: Leucine rich r 92.4 0.078 1.7E-06 28.8 1.2 16 134-149 2-17 (17)
76 KOG0473 Leucine-rich repeat pr 92.2 0.0045 9.7E-08 59.9 -6.4 80 155-236 41-121 (326)
77 KOG0473 Leucine-rich repeat pr 90.8 0.008 1.7E-07 58.3 -6.2 84 129-212 38-122 (326)
78 COG5238 RNA1 Ran GTPase-activa 90.7 0.2 4.3E-06 50.2 3.0 147 106-272 90-253 (388)
79 smart00370 LRR Leucine-rich re 89.7 0.29 6.3E-06 30.1 2.1 20 177-196 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 89.7 0.29 6.3E-06 30.1 2.1 20 177-196 1-20 (26)
81 smart00370 LRR Leucine-rich re 84.6 0.74 1.6E-05 28.2 1.8 22 200-222 1-22 (26)
82 smart00369 LRR_TYP Leucine-ric 84.6 0.74 1.6E-05 28.2 1.8 22 200-222 1-22 (26)
83 smart00367 LRR_CC Leucine-rich 80.5 1 2.2E-05 27.7 1.3 17 819-835 2-18 (26)
84 smart00367 LRR_CC Leucine-rich 77.8 1.3 2.7E-05 27.3 1.1 16 901-916 1-16 (26)
85 smart00364 LRR_BAC Leucine-ric 68.5 3.3 7.1E-05 25.4 1.3 17 179-195 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 65.6 5.5 0.00012 24.5 1.9 12 157-168 3-14 (26)
87 KOG4308 LRR-containing protein 57.9 0.12 2.6E-06 58.7 -11.5 177 88-273 89-302 (478)
88 PF13516 LRR_6: Leucine Rich r 45.7 12 0.00026 22.2 1.1 11 157-167 3-13 (24)
89 smart00368 LRR_RI Leucine rich 42.3 21 0.00045 22.4 1.8 13 157-169 3-15 (28)
90 PF14162 YozD: YozD-like prote 20.9 67 0.0015 23.2 1.5 18 20-40 11-28 (57)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.8e-34 Score=356.90 Aligned_cols=512 Identities=19% Similarity=0.171 Sum_probs=283.4
Q ss_pred CCCCEEEeecCCCccc-CCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-cCCcccCCCCCCcEEE
Q 001951 86 KNCPTIFLHDCKHWEV-PEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQTLC 162 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr~L~ 162 (992)
.+++.|+++++.+... +..+ .+++|++|++++|.+...+|..+|.++++||+|++++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4678888888876533 3333 68888889888888877788888888888999998888876 4553 5678888899
Q ss_pred ccCCCCCC-c-ccccCcccCcEEEccCCCCC-CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 163 LDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 163 L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~-~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 88888762 3 67888888899998888765 67888888888888888888744566766 788888888888888765
Q ss_pred ccccccccCCCCCChhhhcCCCCCCEEEeeccCCc-cCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChH
Q 001951 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (992)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (992)
+..+..++++++|++|++++|.+. .+|..+
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-------------------------------------- 256 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-------------------------------------- 256 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCceeccccChhH--------------------------------------
Confidence 345667888888888888887653 233322
Q ss_pred HHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceec
Q 001951 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (992)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (992)
..+++|+.|++.++. +....|. .+..+++|++|++++|.-...++ .....+++|+.|++.++......
T Consensus 257 ---~~l~~L~~L~L~~n~-l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~-- 324 (968)
T PLN00113 257 ---GNLKNLQYLFLYQNK-LSGPIPP-SIFSLQKLISLDLSDNSLSGEIP-----ELVIQLQNLEILHLFSNNFTGKI-- 324 (968)
T ss_pred ---hCCCCCCEEECcCCe-eeccCch-hHhhccCcCEEECcCCeeccCCC-----hhHcCCCCCcEEECCCCccCCcC--
Confidence 334445555554422 1111111 11445556666665553111110 11233445555555443211111
Q ss_pred CCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecC
Q 001951 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (992)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (992)
+.....+++|+.|++.+|.-...+| ..++.+++|+.|+++++.-...++. ....+++|+.|++.+
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIPE------------GLCSSGNLFKLILFS 389 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCCh------------hHhCcCCCCEEECcC
Confidence 1112345566666666543222232 2245566666666665432222220 112344555555555
Q ss_pred CCccccccccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCC
Q 001951 479 LPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQN 558 (992)
Q Consensus 479 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~ 558 (992)
++-...++. .+.. +++|+.|++++|.++...+..+. .+++
T Consensus 390 n~l~~~~p~----~~~~----------------------------------~~~L~~L~L~~n~l~~~~p~~~~--~l~~ 429 (968)
T PLN00113 390 NSLEGEIPK----SLGA----------------------------------CRSLRRVRLQDNSFSGELPSEFT--KLPL 429 (968)
T ss_pred CEecccCCH----HHhC----------------------------------CCCCCEEECcCCEeeeECChhHh--cCCC
Confidence 432222211 1222 34444444444443322222221 2455
Q ss_pred CcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCccc
Q 001951 559 LTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTS 638 (992)
Q Consensus 559 L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 638 (992)
|+.|+++++ .++...+ .....+++|+.|++++|.....++... ..++|+.|++++|.-...++....
T Consensus 430 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~---------~~~~L~~L~ls~n~l~~~~~~~~~-- 496 (968)
T PLN00113 430 VYFLDISNN-NLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSF---------GSKRLENLDLSRNQFSGAVPRKLG-- 496 (968)
T ss_pred CCEEECcCC-cccCccC-hhhccCCCCcEEECcCceeeeecCccc---------ccccceEEECcCCccCCccChhhh--
Confidence 555555553 3333322 223345555555555555332222211 234555555555443333332221
Q ss_pred CCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeeecCCceEEeecCccccccccccCCccccccccE
Q 001951 639 KWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKN 718 (992)
Q Consensus 639 ~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 718 (992)
.+++|+.|++++|.-...+|... ..+++|++|++++|......+..+ ..+++|+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~-----------------------~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~ 551 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDEL-----------------------SSCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQ 551 (968)
T ss_pred hhhccCEEECcCCcceeeCChHH-----------------------cCccCCCEEECCCCcccccCChhH--hCcccCCE
Confidence 35666666666654333333211 345666666666666654332222 23566677
Q ss_pred EEeecCCCC-cccHHHHhhCCCCcEEEEEcceeEEEcc
Q 001951 719 LEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFS 755 (992)
Q Consensus 719 L~i~~c~~~-~~~~~~l~~l~~L~~L~i~c~~l~~~~~ 755 (992)
|++++|... .+| ..+.++++|+.|+++.+.+...+|
T Consensus 552 L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 777766655 444 345566777777777444544333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-33 Score=355.07 Aligned_cols=531 Identities=18% Similarity=0.150 Sum_probs=310.8
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-cCCcccC-CCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (992)
.+++.|++++|.+...++. .|..+++|++|+|++|.+. .+|..+. .+++||+|++++|.+......+.+++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 5799999999988766654 5789999999999999997 7887655 89999999999999875533467999999999
Q ss_pred cCCCCC-CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCC
Q 001951 186 VDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (992)
Q Consensus 186 ~~~~l~-~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (992)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. +..+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 999887 78999999999999999999844577776 899999999999999875 44678899999999
Q ss_pred EEEeeccCCc-cCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCcccccc
Q 001951 265 TLEIQICDAM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLY 343 (992)
Q Consensus 265 ~L~l~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 343 (992)
.|++++|.+. .+|. .+..+++|++|++.++.. ....|
T Consensus 216 ~L~L~~n~l~~~~p~-----------------------------------------~l~~l~~L~~L~L~~n~l-~~~~p 253 (968)
T PLN00113 216 WIYLGYNNLSGEIPY-----------------------------------------EIGGLTSLNHLDLVYNNL-TGPIP 253 (968)
T ss_pred EEECcCCccCCcCCh-----------------------------------------hHhcCCCCCEEECcCcee-ccccC
Confidence 9999988753 2222 233456777777766432 22222
Q ss_pred cccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccc
Q 001951 344 DLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNI 423 (992)
Q Consensus 344 ~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 423 (992)
. .++.+++|++|++++|.....++ .....+++|++|++ ++|.-...+
T Consensus 254 ~-~l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L---------------------------s~n~l~~~~ 300 (968)
T PLN00113 254 S-SLGNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDL---------------------------SDNSLSGEI 300 (968)
T ss_pred h-hHhCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEEC---------------------------cCCeeccCC
Confidence 2 13667778888887764221110 12233444444444 443211112
Q ss_pred cchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccccccccchhhhhccccccc
Q 001951 424 FSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELS 503 (992)
Q Consensus 424 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 503 (992)
| ..+..+++|+.|+++++.-...++. ....+++|+.|++.++.-...++. .+..
T Consensus 301 p--~~~~~l~~L~~L~l~~n~~~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~p~----~l~~-------- 354 (968)
T PLN00113 301 P--ELVIQLQNLEILHLFSNNFTGKIPV------------ALTSLPRLQVLQLWSNKFSGEIPK----NLGK-------- 354 (968)
T ss_pred C--hhHcCCCCCcEEECCCCccCCcCCh------------hHhcCCCCCEEECcCCCCcCcCCh----HHhC--------
Confidence 1 2244555555555555432222210 112345555555554432211111 1122
Q ss_pred ccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhc
Q 001951 504 THTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFV 583 (992)
Q Consensus 504 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~ 583 (992)
+++|+.|++++|.+....+..+. .+++|+.|++++| ++....|. .+..++
T Consensus 355 --------------------------~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n-~l~~~~p~-~~~~~~ 404 (968)
T PLN00113 355 --------------------------HNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSN-SLEGEIPK-SLGACR 404 (968)
T ss_pred --------------------------CCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCC-EecccCCH-HHhCCC
Confidence 33344444444443222211111 1344555555553 23322232 234455
Q ss_pred CCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCcccCCCcccEEEEecCCcceeecccccc
Q 001951 584 QLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLR 663 (992)
Q Consensus 584 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~ 663 (992)
+|+.|++++|.-...++... ..+++|+.|+++++.-...++.... .+++|+.|++++|.-...+|..
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~--- 471 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEF--------TKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPDS--- 471 (968)
T ss_pred CCCEEECcCCEeeeECChhH--------hcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCcc---
Confidence 55555555554221222111 0344555555554432222222111 3677777777777554444421
Q ss_pred ccccccCcccccccccceeeeeecCCceEEeecCccccccccccCCccccccccEEEeecCCCC-cccHHHHhhCCCCcE
Q 001951 664 FQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFLERFHNLEK 742 (992)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~~-~~~~~~l~~l~~L~~ 742 (992)
...++|+.|++++|......+.. ...+++|+.|++++|... .+| ..+..+++|+.
T Consensus 472 ---------------------~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 527 (968)
T PLN00113 472 ---------------------FGSKRLENLDLSRNQFSGAVPRK--LGSLSELMQLKLSENKLSGEIP-DELSSCKKLVS 527 (968)
T ss_pred ---------------------cccccceEEECcCCccCCccChh--hhhhhccCEEECcCCcceeeCC-hHHcCccCCCE
Confidence 12356777777777665433222 124567777777777665 333 44566777777
Q ss_pred EEEEcceeEEEccChhhhhhhhhccccceEecCCccccccccccCCCcccccccccEEEEeccCCcccccCCccccCCcC
Q 001951 743 LELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLT 822 (992)
Q Consensus 743 L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~L~ 822 (992)
|+++.+.+....+. .+..+++|+.|+++++.-...+|. .+..+++|+.|++++|+-...+|.. +.+.++.
T Consensus 528 L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~ 597 (968)
T PLN00113 528 LDLSHNQLSGQIPA-----SFSEMPVLSQLDLSQNQLSGEIPK----NLGNVESLVQVNISHNHLHGSLPST-GAFLAIN 597 (968)
T ss_pred EECCCCcccccCCh-----hHhCcccCCEEECCCCcccccCCh----hHhcCcccCEEeccCCcceeeCCCc-chhcccC
Confidence 77776566554443 445567777777777654444432 2455667777777777665555432 3333444
Q ss_pred EEEEcCC
Q 001951 823 TLELWYC 829 (992)
Q Consensus 823 ~L~i~~C 829 (992)
...+.+.
T Consensus 598 ~~~~~~n 604 (968)
T PLN00113 598 ASAVAGN 604 (968)
T ss_pred hhhhcCC
Confidence 3333443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=4e-30 Score=322.63 Aligned_cols=417 Identities=24% Similarity=0.294 Sum_probs=270.7
Q ss_pred HHHHHhhCCccccCCCCCcEEecHHHHHHHHHHhccCcceEEeeCCCcCCCCcccc---------CCCCCEEEeecCCCc
Q 001951 29 LVHKLKDYCLLLDGPTEDWIRMHDLVREVAISIASRDRHVFMLRNDIQIEWPVADM---------LKNCPTIFLHDCKHW 99 (992)
Q Consensus 29 ~~~~L~~~~l~~~~~~~~~~~mHDli~dla~~i~~~e~~~~~~~~~~~~~~~~~~~---------~~~~r~l~l~~~~~~ 99 (992)
.++.|+++||++..+ +.++|||++||||+.+++++.. .++.+.+.|...++ .++++.+++....+.
T Consensus 471 ~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred ChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 389999999998543 6799999999999999988752 13344444543222 223344444322211
Q ss_pred ccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcC------c-cCCcccCCC-CCCcEEEccCCCCCCc
Q 001951 100 EVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF------L-SLPSLFHLP-LNLQTLCLDRCALGDI 171 (992)
Q Consensus 100 ~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i------~-~lp~~i~~l-~~Lr~L~L~~~~l~~l 171 (992)
. ..+...+|.+|++|++|.+..+.. . .+|..+..+ .+||+|.+.++.++.+
T Consensus 546 ------------~---------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l 604 (1153)
T PLN03210 546 ------------E---------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM 604 (1153)
T ss_pred ------------e---------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC
Confidence 1 134556688888888888866532 1 467767666 4588888888888777
Q ss_pred ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCC
Q 001951 172 AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSN 251 (992)
Q Consensus 172 ~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 251 (992)
+.-..+.+|++|+++++.+..+|.++..+++|+.|+++++..++.+|. ++.+++|++|++.+|... .
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~ 671 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------V 671 (1153)
T ss_pred CCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------c
Confidence 444467888888888888888888888888888888888876788875 788888888888887543 3
Q ss_pred CChhhhcCCCCCCEEEeeccC-CccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhccccee
Q 001951 252 ASLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEEL 330 (992)
Q Consensus 252 ~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L 330 (992)
..+..++++++|+.|++++|. +..+|..+. +++|+.|
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~------------------------------------------l~sL~~L 709 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGIN------------------------------------------LKSLYRL 709 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcCC------------------------------------------CCCCCEE
Confidence 356677888888888888764 444444332 3345555
Q ss_pred eccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecC-----CCCchh
Q 001951 331 YLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLG-----QLRAES 405 (992)
Q Consensus 331 ~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~~ 405 (992)
.+.+|..... +|. ...+|++|++.++. ++.+ +....+++|++|.+.++.....+ .. ......
T Consensus 710 ~Lsgc~~L~~-~p~----~~~nL~~L~L~~n~-i~~l------P~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~ 776 (1153)
T PLN03210 710 NLSGCSRLKS-FPD----ISTNISWLDLDETA-IEEF------PSNLRLENLDELILCEMKSEKLW-ERVQPLTPLMTML 776 (1153)
T ss_pred eCCCCCCccc-ccc----ccCCcCeeecCCCc-cccc------cccccccccccccccccchhhcc-ccccccchhhhhc
Confidence 5555443322 221 13456666666554 2222 12223556666666554321111 00 001123
Q ss_pred cCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccc
Q 001951 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (992)
Q Consensus 406 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 485 (992)
+++|+.|++.+|+.+..+|. .++++++|+.|++++|..++.++. ...+++|+.|++++|..+..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccc
Confidence 45777777777777766654 266777777777777777766651 124666777777776665544
Q ss_pred cccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEe
Q 001951 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (992)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (992)
+. ..++|+.|+++++.++.+... + ..+++|+.|+++
T Consensus 842 p~-----------------------------------------~~~nL~~L~Ls~n~i~~iP~s-i--~~l~~L~~L~L~ 877 (1153)
T PLN03210 842 PD-----------------------------------------ISTNISDLNLSRTGIEEVPWW-I--EKFSNLSFLDMN 877 (1153)
T ss_pred cc-----------------------------------------cccccCEeECCCCCCccChHH-H--hcCCCCCEEECC
Confidence 32 135677788887776654321 1 247899999999
Q ss_pred cCCCccccCchhhhhhhcCCCEEEEeccccccccc
Q 001951 566 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIV 600 (992)
Q Consensus 566 ~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~ 600 (992)
+|++++.+ |.. ...+++|+.+++++|.+++.+.
T Consensus 878 ~C~~L~~l-~~~-~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 878 GCNNLQRV-SLN-ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCcCcc-Ccc-cccccCCCeeecCCCccccccc
Confidence 99999998 433 5678999999999999887653
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-30 Score=308.69 Aligned_cols=232 Identities=25% Similarity=0.359 Sum_probs=178.2
Q ss_pred ceeheeccccCcCC---cccHHHHHHHHHHHHHHHhhCCccccCC---CCCcEEecHHHHHHHHHHhc-----cCcceEE
Q 001951 2 DLLKYGTGLHIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP---TEDWIRMHDLVREVAISIAS-----RDRHVFM 70 (992)
Q Consensus 2 ~Li~~Wia~G~i~~---~~~~e~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mHDli~dla~~i~~-----~e~~~~~ 70 (992)
+||.||||||||++ ..+.++.|+.| +.+||+|||++..+ +..+|+|||+|||||.++|+ +|..++
T Consensus 432 ~Li~yWiaEGfi~~~~~~~~~~d~G~~~---i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv- 507 (889)
T KOG4658|consen 432 KLIEYWIAEGFIDPLDGGETAEDVGYDY---IEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV- 507 (889)
T ss_pred HHHHHHHhccCcCccccccchhcchHHH---HHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE-
Confidence 58999999999986 44667777766 99999999999654 45899999999999999999 676433
Q ss_pred eeCC-CcCCCCccccCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCC-CCCcChhhhcCCCCCcEEEeeCC-cCcc
Q 001951 71 LRND-IQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNM-QFLS 147 (992)
Q Consensus 71 ~~~~-~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~Ls~~-~i~~ 147 (992)
.++ .....+....+..+|++++.+|.+..++....+++|++|.+.+|.. ...++..+|..|+.||||||++| .+..
T Consensus 508 -~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 508 -SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred -ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 332 3344555556788999999999999999888889999999999873 44788888999999999999976 4678
Q ss_pred CCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCC
Q 001951 148 LPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSR 227 (992)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 227 (992)
+|++|+.|.|||||+++++ .+..+|.++++|++|++|++..+..+..+| +++..|.+
T Consensus 587 LP~~I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~ 643 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT----------------------GISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQS 643 (889)
T ss_pred CChHHhhhhhhhcccccCC----------------------CccccchHHHHHHhhheecccccccccccc-chhhhccc
Confidence 8888877777777666655 567788888888888888888777555554 33566888
Q ss_pred CCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeec
Q 001951 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (992)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (992)
||+|.+..... ..+.....++.++.+|+.+.+..
T Consensus 644 Lr~L~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 644 LRVLRLPRSAL---------SNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccEEEeecccc---------ccchhhHHhhhcccchhhheeec
Confidence 88888766542 12234566677777777666643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.8e-24 Score=225.46 Aligned_cols=303 Identities=18% Similarity=0.249 Sum_probs=213.1
Q ss_pred cccCCCCCEEEeecCCCcccCCC----CCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCC
Q 001951 82 ADMLKNCPTIFLHDCKHWEVPEG----LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLN 157 (992)
Q Consensus 82 ~~~~~~~r~l~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~ 157 (992)
....-..+-++.+++.++.+.+. .-.+..++|++++|.+. .+...+|.++++|+.+.+..|.++.+|...+...|
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 34455667777777777655322 23467889999999887 67777899999999999999999999987777889
Q ss_pred CcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEee
Q 001951 158 LQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMG 234 (992)
Q Consensus 158 Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 234 (992)
|+.|+|.+|.|..+ +.+..+..||.||||.|.|.++|. .+..=.++++|+|++|. ++.+..+.+..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 99999999999988 789999999999999999999875 57777899999999998 999988889999999999999
Q ss_pred cCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeeccc
Q 001951 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (992)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (992)
+|.++ ...+..+++|++|+.|++..|.+.......
T Consensus 206 rNrit-----------tLp~r~Fk~L~~L~~LdLnrN~irive~lt---------------------------------- 240 (873)
T KOG4194|consen 206 RNRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGLT---------------------------------- 240 (873)
T ss_pred cCccc-----------ccCHHHhhhcchhhhhhccccceeeehhhh----------------------------------
Confidence 99887 445678999999999999998875442211
Q ss_pred CChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeecccccccc
Q 001951 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLE 394 (992)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~ 394 (992)
+..+++|+.|.+.. +++.. +.+-.+-.+.++++|+++.|. +..+ ... ...++..|+.|+++. +.+.
T Consensus 241 ------FqgL~Sl~nlklqr-N~I~k-L~DG~Fy~l~kme~l~L~~N~-l~~v--n~g--~lfgLt~L~~L~lS~-NaI~ 306 (873)
T KOG4194|consen 241 ------FQGLPSLQNLKLQR-NDISK-LDDGAFYGLEKMEHLNLETNR-LQAV--NEG--WLFGLTSLEQLDLSY-NAIQ 306 (873)
T ss_pred ------hcCchhhhhhhhhh-cCccc-ccCcceeeecccceeecccch-hhhh--hcc--cccccchhhhhccch-hhhh
Confidence 11133344444433 11111 111122445566666666554 2111 111 123345566666655 3334
Q ss_pred ceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhh
Q 001951 395 KICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (992)
Q Consensus 395 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (992)
.+....+ ...++|++|+++. ++++.+++ ..+..+..|++|.+++ +++..+.
T Consensus 307 rih~d~W--sftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~ 357 (873)
T KOG4194|consen 307 RIHIDSW--SFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSH-NSIDHLA 357 (873)
T ss_pred eeecchh--hhcccceeEeccc-cccccCCh-hHHHHHHHhhhhcccc-cchHHHH
Confidence 3322211 2457888888887 67777765 4467778888888877 4455443
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-24 Score=238.49 Aligned_cols=482 Identities=20% Similarity=0.239 Sum_probs=282.7
Q ss_pred EEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCC
Q 001951 91 IFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALG 169 (992)
Q Consensus 91 l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~ 169 (992)
+++++..++-+|..+ .-..+..|.+..|.+. ..|-.+..+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 445555566666544 3333777777776554 44555555555699999999999999998999999999999999888
Q ss_pred Cc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccC
Q 001951 170 DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (992)
Q Consensus 170 ~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (992)
.. .+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+..++| ..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~--------- 149 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK--------- 149 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh---------
Confidence 66 78889999999999999999999999999999999999988 7888876 778888888887777 21
Q ss_pred CCCCChhhhcCCCCCCEEEeeccCC-ccCCCccccCCccE-EEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcc
Q 001951 249 RSNASLQELKLLSHLTTLEIQICDA-MILPKGLFSKKLER-YKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG 326 (992)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~-l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~ 326 (992)
+..++... ++.+++..+.+ ..++.++ .+++. +++..+.+ . ......+++
T Consensus 150 -----~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~-------------------~--~~dls~~~~ 200 (1081)
T KOG0618|consen 150 -----IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEM-------------------E--VLDLSNLAN 200 (1081)
T ss_pred -----hhhhcccc-chhhhhhhhhcccchhcch--hhhheeeecccchh-------------------h--hhhhhhccc
Confidence 22233322 44555544432 1122221 11111 11111110 0 001122333
Q ss_pred cceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhc
Q 001951 327 IEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESF 406 (992)
Q Consensus 327 L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 406 (992)
|+.+.... +.+ ..+. -.-++|+.|+...|+-.+. .......+|+++++++ .++..+. -..+.+
T Consensus 201 l~~l~c~r-n~l----s~l~-~~g~~l~~L~a~~n~l~~~-------~~~p~p~nl~~~dis~-n~l~~lp---~wi~~~ 263 (1081)
T KOG0618|consen 201 LEVLHCER-NQL----SELE-ISGPSLTALYADHNPLTTL-------DVHPVPLNLQYLDISH-NNLSNLP---EWIGAC 263 (1081)
T ss_pred hhhhhhhh-ccc----ceEE-ecCcchheeeeccCcceee-------ccccccccceeeecch-hhhhcch---HHHHhc
Confidence 33333322 111 1110 1234455555555542211 1111223455555544 2222211 112345
Q ss_pred CCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCcccccc
Q 001951 407 YKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFY 486 (992)
Q Consensus 407 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 486 (992)
++|+.+.+.. +.+..+|. ......+|+.|.+.. ..++.+++ ....+.+|++|++... ++.+++
T Consensus 264 ~nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~-nel~yip~------------~le~~~sL~tLdL~~N-~L~~lp 326 (1081)
T KOG0618|consen 264 ANLEALNANH-NRLVALPL--RISRITSLVSLSAAY-NELEYIPP------------FLEGLKSLRTLDLQSN-NLPSLP 326 (1081)
T ss_pred ccceEecccc-hhHHhhHH--HHhhhhhHHHHHhhh-hhhhhCCC------------cccccceeeeeeehhc-cccccc
Confidence 5555555544 34444432 133344555555544 23444442 2234677888887753 444444
Q ss_pred ccccchhhhh-cccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEe
Q 001951 487 SQVKTSAASQ-TRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (992)
Q Consensus 487 ~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (992)
.. .+... .+|..|..+..+.-.. |.+ +...++.|+.|.+.+|.+++-.-..+ .++.+|+.|+++
T Consensus 327 ~~---~l~v~~~~l~~ln~s~n~l~~l---------p~~-~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 327 DN---FLAVLNASLNTLNVSSNKLSTL---------PSY-EENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLS 391 (1081)
T ss_pred hH---HHhhhhHHHHHHhhhhcccccc---------ccc-cchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeec
Confidence 31 11111 1234444433321111 111 12357889999999999665322222 348999999999
Q ss_pred cCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCcccCCCcccE
Q 001951 566 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKK 645 (992)
Q Consensus 566 ~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~ 645 (992)
+ +.|..+ |.+.+.++..|++|+++|+. ++.++.... .++.|+.|...+ ..+..+|.-. .++.|+.
T Consensus 392 y-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva--------~~~~L~tL~ahs-N~l~~fPe~~---~l~qL~~ 456 (1081)
T KOG0618|consen 392 Y-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA--------NLGRLHTLRAHS-NQLLSFPELA---QLPQLKV 456 (1081)
T ss_pred c-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH--------hhhhhHHHhhcC-Cceeechhhh---hcCcceE
Confidence 9 789887 88889999999999999998 998885332 677888886654 4567777332 5789999
Q ss_pred EEEecCCcceeeccccccccccccCcccccccccceeeeeec-CCceEEeecCccccc
Q 001951 646 LEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT-SKLEELKLSGKDIAM 702 (992)
Q Consensus 646 L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 702 (992)
+|++ |.+|+.+.... ... ++|++|+++||.-..
T Consensus 457 lDlS-~N~L~~~~l~~-----------------------~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 457 LDLS-CNNLSEVTLPE-----------------------ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred Eecc-cchhhhhhhhh-----------------------hCCCcccceeeccCCcccc
Confidence 9996 46776442110 223 789999999887543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1e-22 Score=214.76 Aligned_cols=334 Identities=19% Similarity=0.238 Sum_probs=179.3
Q ss_pred CCCCCEEEeecCCCcccCCC--CCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEE
Q 001951 85 LKNCPTIFLHDCKHWEVPEG--LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTL 161 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L 161 (992)
+...+.|++++|.+.++... .++++|+.+.+..|.+. .||.. -....+|+.|+|.+|.|.++. +++..+..||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 34555666666655443322 25566666666555544 44431 122334555555555555443 244555555555
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
||+.|.|..+ +++..=.++++|+|++|.|+.+-. .|..+.+|-+|.|+.|. ++.+|...+.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 5555555544 455555555555555555555532 35555555555555555 5555555455555555555555544
Q ss_pred cccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCCc----cCccCCcCcceEEEeec
Q 001951 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDE----WDWSGNYKNKRVLKLKL 312 (992)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~----~~~~~~~~~l~~l~l~~ 312 (992)
. ...--.+..|.+|+.|.+..|++..+..++ .+.+++.+++..+.. -.|.-....++.++++.
T Consensus 234 r-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 234 R-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred e-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 3 001123445555555555555555555444 455555555544433 12333344444444443
Q ss_pred cc-CChHH-HHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeecccc
Q 001951 313 YT-SNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (992)
Q Consensus 313 ~~-~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 390 (992)
+. .++.. .....++|++|+|+. +.++. +++-.+..+..|++|.++.|. +.++-+ ..+..+.+|++|++.+.
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~-N~i~~-l~~~sf~~L~~Le~LnLs~Ns-i~~l~e----~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSS-NRITR-LDEGSFRVLSQLEELNLSHNS-IDHLAE----GAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhheeecchhhhcccceeEeccc-ccccc-CChhHHHHHHHhhhhcccccc-hHHHHh----hHHHHhhhhhhhcCcCC
Confidence 32 22221 334467788888876 33333 333334667778888887775 222211 33455677888888763
Q ss_pred ccccceec--CCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccc
Q 001951 391 IHLEKICL--GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINC 443 (992)
Q Consensus 391 ~~l~~~~~--~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 443 (992)
.+. |+. +..+...+++|++|.+.+ ++++.++. ..+.++++|++|++.+.
T Consensus 376 -~ls-~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 376 -ELS-WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDN 426 (873)
T ss_pred -eEE-EEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCC
Confidence 222 111 112233478888888888 77888765 45788888888888774
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.8e-25 Score=225.26 Aligned_cols=236 Identities=26% Similarity=0.394 Sum_probs=104.6
Q ss_pred CCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
+..+.+++|+..++|+.+ .+..++.++.+.|... .+|..+ ..+..|+.|+.+.|.+..+|++++.+..|..|+..+|
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc
Confidence 334444444444444333 3344444444444333 333332 3344444444444444444444444444444444444
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccc
Q 001951 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
.+..+ ++++++.+|..|++.+|+++++|+..-+++.|++||.-.|- ++.+|++ +|.|.+|.-|++..|.+.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~------ 219 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIR------ 219 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccc------
Confidence 43332 44444444444444444444444433334444444444443 4444444 444444444444444332
Q ss_pred ccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeeccc-CChHHHHHhh
Q 001951 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT-SNVDEVIMQL 324 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~-~~l~~~~~~l 324 (992)
...++.....|.+|++..|.++.+|+.. ......+..+++..+. ..+|+-...+
T Consensus 220 -------~lPef~gcs~L~Elh~g~N~i~~lpae~------------------~~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 220 -------FLPEFPGCSLLKELHVGENQIEMLPAEH------------------LKHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred -------cCCCCCccHHHHHHHhcccHHHhhHHHH------------------hcccccceeeeccccccccCchHHHHh
Confidence 1123333333333333333333333322 1112222333333322 4555555667
Q ss_pred cccceeeccccCCcccccccccccccccccEEEeecCC
Q 001951 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
++|++|++++ +.+....+.+ +++ +|+.|.+.|++
T Consensus 275 rsL~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 275 RSLERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence 7777777776 4444444444 666 77888887776
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.3e-20 Score=236.99 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=206.0
Q ss_pred cCCCCCEEEeecCCC-------cccCCCC-C-CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCC
Q 001951 84 MLKNCPTIFLHDCKH-------WEVPEGL-E-YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL 154 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~-------~~l~~~~-~-~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~ 154 (992)
..++++.|.+..+.. ..+|..+ . ..+||.|.+.++... .+|..+ ...+|++|+++++.+..+|..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccccccccc
Confidence 367888888865432 1355544 2 357999999888765 677654 578999999999999999999999
Q ss_pred CCCCcEEEccCCC-CCCcccccCcccCcEEEccCC-CCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEE
Q 001951 155 PLNLQTLCLDRCA-LGDIAIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (992)
Q Consensus 155 l~~Lr~L~L~~~~-l~~l~~i~~L~~L~~L~L~~~-~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 232 (992)
+++|++|+|+++. +..++.++.+++|++|++++| .+.++|..++++++|++|++++|..+..+|.. + ++++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 9999999999876 677788999999999999998 67899999999999999999999889999986 3 899999999
Q ss_pred eecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeec
Q 001951 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKL 312 (992)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~ 312 (992)
+++|... ...+ . ...+|+.|++.++.+..+|....+++|..|.+............
T Consensus 711 Lsgc~~L-----------~~~p-~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~---------- 766 (1153)
T PLN03210 711 LSGCSRL-----------KSFP-D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV---------- 766 (1153)
T ss_pred CCCCCCc-----------cccc-c--ccCCcCeeecCCCccccccccccccccccccccccchhhccccc----------
Confidence 9988543 1111 1 24578999999999888887766667766655321110000000
Q ss_pred ccCChH-HHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccc
Q 001951 313 YTSNVD-EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLI 391 (992)
Q Consensus 313 ~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 391 (992)
..+. ......++|+.|++.++......+..+ +.+++|+.|++++|..++.++. ...+++|+.|++++|.
T Consensus 767 --~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~------~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 767 --QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPT------GINLESLESLDLSGCS 836 (1153)
T ss_pred --cccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCC------CCCccccCEEECCCCC
Confidence 0000 011223456666665544433322222 4555666666665555444421 1134555555555555
Q ss_pred cccceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhh
Q 001951 392 HLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIF 450 (992)
Q Consensus 392 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 450 (992)
.+..+. ...++|+.|++.+ +.++.+|. .+..+++|+.|++.+|++++.++
T Consensus 837 ~L~~~p------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 837 RLRTFP------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred cccccc------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence 444321 1224555555554 34444442 24455555555555555555544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=4e-25 Score=222.79 Aligned_cols=156 Identities=20% Similarity=0.306 Sum_probs=91.2
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEcc
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLV 186 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~ 186 (992)
..+..+++++|... .+.++ ..++..|.||++++|.+..+|.+++.+..+..|+.++|.+..+ +.++.+.+|+.|+.+
T Consensus 45 v~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchh-hccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 44555666666554 22223 3566666666666666666666666666666666666665544 566666666666666
Q ss_pred CCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEE
Q 001951 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (992)
Q Consensus 187 ~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (992)
+|.+.++|++|+.+..|..|+..+|. +..+|++ ++.+.+|..|++.+|.+. +.+...-+++.|++|
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRLKHL 188 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHHHhc
Confidence 66666666666666666666666655 6666655 556666666665555543 233333335556666
Q ss_pred EeeccCCccCCCc
Q 001951 267 EIQICDAMILPKG 279 (992)
Q Consensus 267 ~l~~~~~~~~~~~ 279 (992)
+...|..+.+|.+
T Consensus 189 d~~~N~L~tlP~~ 201 (565)
T KOG0472|consen 189 DCNSNLLETLPPE 201 (565)
T ss_pred ccchhhhhcCChh
Confidence 6555555555443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.4e-23 Score=219.39 Aligned_cols=318 Identities=21% Similarity=0.251 Sum_probs=219.8
Q ss_pred cCCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCC-CCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEE
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L 161 (992)
.+.++.||++.+|++..+...+ +++.||++++..|.+. ..+|.++| +++.|.+||||+|++++.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3678999999999988777665 8999999999888763 46898886 7999999999999999999999999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+|++|.|..+ +-+-+|+.|-+||||+|.++.+|..+..|.+|++|++++|. +..+.-..+-.+++|++|.+++..-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999977 66789999999999999999999999999999999999997 54332222456788999999887644
Q ss_pred ccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc-ccCCccEEEEEeCCccCccCCcCcceEEEeecccCChH
Q 001951 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (992)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (992)
. ...+..+..+.+|+.++++.|.+..+|.-+ .+.+|++|+++.+.+-+...
T Consensus 211 l----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~------------------ 262 (1255)
T KOG0444|consen 211 L----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM------------------ 262 (1255)
T ss_pred h----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec------------------
Confidence 2 346778889999999999999998888877 88889999887666521111
Q ss_pred HHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCc-cccccccccceeecccccccccee
Q 001951 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLIHLEKIC 397 (992)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~ 397 (992)
..+.-.+|+.|+++. +.++..+..+ ..++.|+.|.+.++. +. -..+ .+++.+.+|+.+...+ ++++-++
T Consensus 263 -~~~~W~~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~n~Nk-L~----FeGiPSGIGKL~~Levf~aan-N~LElVP 332 (1255)
T KOG0444|consen 263 -TEGEWENLETLNLSR-NQLTVLPDAV--CKLTKLTKLYANNNK-LT----FEGIPSGIGKLIQLEVFHAAN-NKLELVP 332 (1255)
T ss_pred -cHHHHhhhhhhcccc-chhccchHHH--hhhHHHHHHHhccCc-cc----ccCCccchhhhhhhHHHHhhc-cccccCc
Confidence 111223444555544 2222211111 445555555554443 11 0111 2334445555555544 3333331
Q ss_pred cCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCch
Q 001951 398 LGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK 447 (992)
Q Consensus 398 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 447 (992)
-....+++|+.|.+.. +.+..+|. .+.-++-|+.|++...+++.
T Consensus 333 ---EglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 333 ---EGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCcc
Confidence 1123455566666543 55555543 24556666666666655553
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=8.8e-23 Score=216.28 Aligned_cols=363 Identities=19% Similarity=0.210 Sum_probs=253.3
Q ss_pred CCCCCEEEeecCCCc--ccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEE
Q 001951 85 LKNCPTIFLHDCKHW--EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTL 161 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L 161 (992)
++-+|-+++++|++. .+|..+ .++.++.|.+....+. .+|+. ++.+.+|..|.+++|++..+-..+..|+.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 556788899999875 677777 6899999999877665 68876 588999999999999999888889999999999
Q ss_pred EccCCCCC---CcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 162 CLDRCALG---DIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 162 ~L~~~~l~---~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
+++.|.++ .+..|.+|..|.+||||+|.+++.|.++.+-+++-.|++++|+ +..||...+.+|+.|-.|++++|..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh
Confidence 99999987 3488999999999999999999999999999999999999998 9999999888999999999999877
Q ss_pred cccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCc--cccCCccEEEEEeCCccCccCCcCcceEEEeecccCC
Q 001951 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG--LFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSN 316 (992)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~ 316 (992)
. ..+.++..|.+|++|++++|.+....-. -.+..|+.|+++.... + -.+
T Consensus 163 e------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-----------T------l~N 213 (1255)
T KOG0444|consen 163 E------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-----------T------LDN 213 (1255)
T ss_pred h------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-----------h------hhc
Confidence 4 5788899999999999998865322110 0234444444432211 0 033
Q ss_pred hHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccce
Q 001951 317 VDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKI 396 (992)
Q Consensus 317 l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 396 (992)
+|..+..+.+|..++++. +++..++..+ -.+++|+.|+++++. ++.+. ...+...+|++|.++. +.++.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecl--y~l~~LrrLNLS~N~-iteL~-----~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSE-NNLPIVPECL--YKLRNLRRLNLSGNK-ITELN-----MTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred CCCchhhhhhhhhccccc-cCCCcchHHH--hhhhhhheeccCcCc-eeeee-----ccHHHHhhhhhhcccc-chhccc
Confidence 444455566777777765 3333222222 566777777777765 22221 2233445677777766 344433
Q ss_pred ecCCCCchhcCCccEEEEecCCCCcc--ccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEE
Q 001951 397 CLGQLRAESFYKLKIIKVRNCDKLKN--IFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSL 474 (992)
Q Consensus 397 ~~~~~~~~~~~~L~~L~l~~c~~L~~--l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L 474 (992)
+.....+++|+.|.+.+ ++++. +|+ -++.+.+|+++...+ +.++-+|. ++..+++|++|
T Consensus 284 ---P~avcKL~kL~kLy~n~-NkL~FeGiPS--GIGKL~~Levf~aan-N~LElVPE------------glcRC~kL~kL 344 (1255)
T KOG0444|consen 284 ---PDAVCKLTKLTKLYANN-NKLTFEGIPS--GIGKLIQLEVFHAAN-NKLELVPE------------GLCRCVKLQKL 344 (1255)
T ss_pred ---hHHHhhhHHHHHHHhcc-CcccccCCcc--chhhhhhhHHHHhhc-cccccCch------------hhhhhHHHHHh
Confidence 12234566677776655 44432 332 356666677666665 45555541 34567777777
Q ss_pred eecCCCccccccccccchhhhhcccccccccCCCceeec
Q 001951 475 TLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVIL 513 (992)
Q Consensus 475 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 513 (992)
.+.. ..+..+|. ....++.|+.|+++.+|+|+.|
T Consensus 345 ~L~~-NrLiTLPe----aIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 345 KLDH-NRLITLPE----AIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccc-cceeechh----hhhhcCCcceeeccCCcCccCC
Confidence 7764 44545554 2556777777777777777655
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=223.53 Aligned_cols=472 Identities=19% Similarity=0.192 Sum_probs=268.0
Q ss_pred CcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCC
Q 001951 123 KIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQL 200 (992)
Q Consensus 123 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L 200 (992)
.||..++.+-. +..|+++.|.+-..|- .+.+..+|+.|++++|.+... ..|..+.+|+.|+++.|.|.++|.+++++
T Consensus 12 ~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 12 LIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred ccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 45655554433 7777777776655442 334455577888887776644 67777777888888877777777777777
Q ss_pred CCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC-CccCCCc
Q 001951 201 TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD-AMILPKG 279 (992)
Q Consensus 201 ~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 279 (992)
.+|++|+|.+|. +..+|.+ +..+++|+.|+++.|.+. ..+.-+..++.+..+..++|. +..++..
T Consensus 91 ~~l~~lnL~~n~-l~~lP~~-~~~lknl~~LdlS~N~f~------------~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~ 156 (1081)
T KOG0618|consen 91 RNLQYLNLKNNR-LQSLPAS-ISELKNLQYLDLSFNHFG------------PIPLVIEVLTAEEELAASNNEKIQRLGQT 156 (1081)
T ss_pred hcchhheeccch-hhcCchh-HHhhhcccccccchhccC------------CCchhHHhhhHHHHHhhhcchhhhhhccc
Confidence 888888777776 7777777 677777777777777654 234445555555555555551 1111110
Q ss_pred cccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEee
Q 001951 280 LFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQ 359 (992)
Q Consensus 280 ~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~ 359 (992)
. .+.+++..+.. ..++..-...+.. .|+|.+.... .+....+++|+.+...
T Consensus 157 ~----ik~~~l~~n~l------------------~~~~~~~i~~l~~--~ldLr~N~~~-----~~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 157 S----IKKLDLRLNVL------------------GGSFLIDIYNLTH--QLDLRYNEME-----VLDLSNLANLEVLHCE 207 (1081)
T ss_pred c----chhhhhhhhhc------------------ccchhcchhhhhe--eeecccchhh-----hhhhhhccchhhhhhh
Confidence 0 11111110000 0111111111222 3555442211 1122455556665555
Q ss_pred cCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEE
Q 001951 360 NNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLN 439 (992)
Q Consensus 360 ~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 439 (992)
.+...... ..-++|+.|+..+++-.+. .....-.+|+.++++. +++..+| .++..+++|+.++
T Consensus 208 rn~ls~l~---------~~g~~l~~L~a~~n~l~~~-----~~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 208 RNQLSELE---------ISGPSLTALYADHNPLTTL-----DVHPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALN 270 (1081)
T ss_pred hcccceEE---------ecCcchheeeeccCcceee-----ccccccccceeeecch-hhhhcch--HHHHhcccceEec
Confidence 44322111 1224455555555443211 1111223555666555 4455554 3455555555555
Q ss_pred eccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccccccccchhhhhcccccccccCCCceeecccccCc
Q 001951 440 VINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDT 519 (992)
Q Consensus 440 l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 519 (992)
+.+ +.+..++ .
T Consensus 271 ~n~-N~l~~lp------------------------------------~-------------------------------- 281 (1081)
T KOG0618|consen 271 ANH-NRLVALP------------------------------------L-------------------------------- 281 (1081)
T ss_pred ccc-hhHHhhH------------------------------------H--------------------------------
Confidence 544 2222222 1
Q ss_pred ccccccccccccccceeeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcC-CCEEEEeccccccc
Q 001951 520 LMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQ-LEHLEICYCSSLES 598 (992)
Q Consensus 520 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~-L~~L~i~~c~~l~~ 598 (992)
......+|+.|.+.+|.+..+.+... .+.+|++|++.. ++|.++ |..++..+.. |+.|+.+..+ +..
T Consensus 282 ------ri~~~~~L~~l~~~~nel~yip~~le---~~~sL~tLdL~~-N~L~~l-p~~~l~v~~~~l~~ln~s~n~-l~~ 349 (1081)
T KOG0618|consen 282 ------RISRITSLVSLSAAYNELEYIPPFLE---GLKSLRTLDLQS-NNLPSL-PDNFLAVLNASLNTLNVSSNK-LST 349 (1081)
T ss_pred ------HHhhhhhHHHHHhhhhhhhhCCCccc---ccceeeeeeehh-cccccc-chHHHhhhhHHHHHHhhhhcc-ccc
Confidence 11123445555555555444433221 257788888887 677777 5444444433 6777776554 555
Q ss_pred cccccccccccceeecCccCccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccc
Q 001951 599 IVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQ 678 (992)
Q Consensus 599 i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~ 678 (992)
.+.-++. .++.|+.|.+.+.. |++-+.... ..++.|+.|++++ ..|.+||....
T Consensus 350 lp~~~e~-------~~~~Lq~LylanN~-Ltd~c~p~l-~~~~hLKVLhLsy-NrL~~fpas~~---------------- 403 (1081)
T KOG0618|consen 350 LPSYEEN-------NHAALQELYLANNH-LTDSCFPVL-VNFKHLKVLHLSY-NRLNSFPASKL---------------- 403 (1081)
T ss_pred cccccch-------hhHHHHHHHHhcCc-ccccchhhh-ccccceeeeeecc-cccccCCHHHH----------------
Confidence 5432221 67888889888754 332222222 2578999999998 57888884321
Q ss_pred cceeeeeecCCceEEeecCccccccccccCCccccccccEEEeecCCCCcccHHHHhhCCCCcEEEEEcceeEEEccChh
Q 001951 679 ALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEE 758 (992)
Q Consensus 679 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~ 758 (992)
..+..|++|+++||....+. .....++.|+.|...++....+| .+..++.|+.++|+|+++..+.-..
T Consensus 404 ------~kle~LeeL~LSGNkL~~Lp---~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~- 471 (1081)
T KOG0618|consen 404 ------RKLEELEELNLSGNKLTTLP---DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPE- 471 (1081)
T ss_pred ------hchHHhHHHhcccchhhhhh---HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhh-
Confidence 46788999999999987633 11234667777777666666888 5667999999999999988753321
Q ss_pred hhhhhhhc-cccceEecCCccc
Q 001951 759 IVEHAEML-TQVKSLKLWELSD 779 (992)
Q Consensus 759 ~~~~~~~l-~~L~~L~l~~~~~ 779 (992)
... +.|++|++++...
T Consensus 472 -----~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 472 -----ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -----hCCCcccceeeccCCcc
Confidence 112 7899999988765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-18 Score=154.10 Aligned_cols=167 Identities=26% Similarity=0.373 Sum_probs=142.9
Q ss_pred CcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccC
Q 001951 98 HWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGN 176 (992)
Q Consensus 98 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~ 176 (992)
+.+++..+++++++.|.+++|.+. .+|+.+ ..+++|++|++++|+++.+|.+++.++.||.|++.-|++..+ ..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 445666667888888888888876 566664 789999999999999999999999999999999998887755 88999
Q ss_pred cccCcEEEccCCCCC--CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCCh
Q 001951 177 LKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 254 (992)
Q Consensus 177 L~~L~~L~L~~~~l~--~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 254 (992)
++-|++||+.+|++. .+|..|..|+.||.|+++.|. ...+|++ ++++++||.|.+..|... ..+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCc
Confidence 999999999999776 689889999999999999988 8888988 899999999998888764 468
Q ss_pred hhhcCCCCCCEEEeeccCCccCCCcc
Q 001951 255 QELKLLSHLTTLEIQICDAMILPKGL 280 (992)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (992)
.+++.++.|++|++.+|.+..+|.++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChhh
Confidence 89999999999999999988888765
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.1e-17 Score=145.83 Aligned_cols=161 Identities=25% Similarity=0.350 Sum_probs=145.6
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
...+.++.+++|++..+|+.+ ++.+|++|.+++|.+. ++|..+ ++++.||.|+++-|.+..+|..||.++-|++|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 567889999999999999988 8999999999999887 788774 8999999999999999999999999999999999
Q ss_pred cCCCCC--Cc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccc
Q 001951 164 DRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKW 240 (992)
Q Consensus 164 ~~~~l~--~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 240 (992)
.+|.+. .+ ..|..+..|+.|.++.|+++-+|.++++|++||.|.+..|. +-.+|.+ ++.++.|++|++.+|...
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee-
Confidence 999976 23 77888999999999999999999999999999999999998 8899999 899999999999999876
Q ss_pred cccccccCCCCCChhhhcCCC
Q 001951 241 EFEGLNVGRSNASLQELKLLS 261 (992)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~ 261 (992)
..+.+++++.
T Consensus 187 -----------vlppel~~l~ 196 (264)
T KOG0617|consen 187 -----------VLPPELANLD 196 (264)
T ss_pred -----------ecChhhhhhh
Confidence 3566666654
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2.8e-15 Score=152.28 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=115.5
Q ss_pred CCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccC-CCCCCc--c
Q 001951 97 KHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR-CALGDI--A 172 (992)
Q Consensus 97 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~-~~l~~l--~ 172 (992)
.+.++|..+. +....+.|..|.+. .+|+.+|+.+++||.||||+|.|+.+ |++|..+..|-.|-+-+ |+|+++ .
T Consensus 57 GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4556666553 45567788888877 79999999999999999999999977 78999998887777666 779987 7
Q ss_pred cccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCc
Q 001951 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (992)
Q Consensus 173 ~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (992)
.|++|..||-|.+.-|++.-++ +.+..|.+|+.|.+..|. +..++.+.+..+.+++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 8999999999999999888665 468999999999999987 888998778899999999887765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=1.3e-12 Score=152.39 Aligned_cols=236 Identities=18% Similarity=0.129 Sum_probs=123.4
Q ss_pred cCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
+..+++.|++.+|++..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..+|..+ .+|+.|++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWI 289 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEEC
Confidence 344566666666666655543 356666666666554 3442 1245666666666666555422 34556666
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
++|.++.++. .+++|++|++++|.+..+|... .+|+.|++++|. +..+|.- ..+|++|++++|.+..
T Consensus 290 s~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS~N~Ls~--- 356 (788)
T PRK15387 290 FGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PSGLQELSVSDNQLAS--- 356 (788)
T ss_pred cCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----ccccceEecCCCccCC---
Confidence 6666554432 1345666666666666655422 234555566555 5555531 1356666666665540
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHh
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQ 323 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~ 323 (992)
.+. + ..+|+.|++++|.+..+|... .+|+.+++..+.+ ..+|. .
T Consensus 357 ---------LP~-l--p~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~L-------------------t~LP~---l 400 (788)
T PRK15387 357 ---------LPT-L--PSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRL-------------------TSLPV---L 400 (788)
T ss_pred ---------CCC-C--CcccceehhhccccccCcccc--cccceEEecCCcc-------------------cCCCC---c
Confidence 111 1 124555555555555554322 3455555443322 22221 1
Q ss_pred hcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeecccc
Q 001951 324 LKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNL 390 (992)
Q Consensus 324 l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 390 (992)
.++|+.|+++++ .+.. +|.+ ..+|+.|++++|. ++.+++ ....+++|+.|+++++
T Consensus 401 ~s~L~~LdLS~N-~Lss-IP~l----~~~L~~L~Ls~Nq-Lt~LP~-----sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 401 PSELKELMVSGN-RLTS-LPML----PSGLLSLSVYRNQ-LTRLPE-----SLIHLSSETTVNLEGN 455 (788)
T ss_pred ccCCCEEEccCC-cCCC-CCcc----hhhhhhhhhccCc-ccccCh-----HHhhccCCCeEECCCC
Confidence 346777887773 3333 3322 3467778887765 333331 2445677888888774
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=9e-13 Score=153.66 Aligned_cols=157 Identities=23% Similarity=0.283 Sum_probs=97.8
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (992)
-..|+++.+.+..+|+.+. ++|+.|.+.+|.+. .+|. ..++|++|++++|.++.+|.. ..+|++|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4467777777777776553 46777777777665 4553 246677777777777777643 3567777777777
Q ss_pred CCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccccc
Q 001951 168 LGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (992)
Q Consensus 168 l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (992)
+..++.+ ..+|+.|++++|+++.+|.. +.+|++|++++|. +..+|.. . .+|+.|++.+|.+.
T Consensus 274 L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~-------- 335 (788)
T PRK15387 274 LTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLT-------- 335 (788)
T ss_pred hhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccc--------
Confidence 6655321 25677777777777777752 3567777777775 6666642 2 34666666666554
Q ss_pred CCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 248 GRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
.+..+ ..+|+.|++++|.+..+|.
T Consensus 336 -----~LP~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 336 -----SLPTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -----ccccc--ccccceEecCCCccCCCCC
Confidence 01111 1357777777776665554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=7e-13 Score=155.79 Aligned_cols=115 Identities=24% Similarity=0.347 Sum_probs=56.7
Q ss_pred ccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCC
Q 001951 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDS 188 (992)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~ 188 (992)
...|.+.++.+. .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.++.+ ..+. .+|++|++++|
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 344555444433 344322 1345555555555555554433 3555555555555544 2221 34555555555
Q ss_pred CCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 189 NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 189 ~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
.+..+|..+. .+|++|++++|. +..+|.. +. .+|++|++++|.+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcc
Confidence 5555555443 355555555554 5555543 22 3555555555544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1.5e-12 Score=152.96 Aligned_cols=176 Identities=21% Similarity=0.302 Sum_probs=90.4
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
+...+.+.++++..+|..+. +.++.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 34455555555555554432 35666666666554 4554433 356666666666666655433 35666666666
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccc
Q 001951 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
.+..+ ..+. .+|++|++++|++..+|..+. .+|++|++++|. +..+|.. +. .+|++|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt------ 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT------ 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc------
Confidence 65544 2222 356666666666666655443 356666666655 5555543 22 34555565555543
Q ss_pred ccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEe
Q 001951 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFI 292 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~ 292 (992)
..+..+ .++|+.|++++|.+..+|..+. .+|+.|++..
T Consensus 318 ------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~ 355 (754)
T PRK15370 318 ------ALPETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSK 355 (754)
T ss_pred ------cCCccc--cccceeccccCCccccCChhhc-CcccEEECCC
Confidence 011111 1345556666655555554331 3455554443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-13 Score=140.25 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=122.9
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeC-CcCcc
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQFLS 147 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~i~~ 147 (992)
.++....++| .+.+.....|.+..|.|..+|+.. .+++||.|+++.|.++ .|.+++|++++.|-.|-+.+ |+|+.
T Consensus 53 Cr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhh
Confidence 4455666666 477889999999999999999876 8999999999999988 78888999999988876666 89999
Q ss_pred CCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCC
Q 001951 148 LPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 148 lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~ 212 (992)
+|+ .|++|..|+.|.+.-|.+..+ ..+..|++|..|.+..|.+..++. .+..+..++++.+..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 996 799999999999999998876 889999999999999999999988 78999999999887765
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.6e-12 Score=155.27 Aligned_cols=129 Identities=25% Similarity=0.340 Sum_probs=104.0
Q ss_pred cCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCC--CCCc--ccccCcccCcEEEccCC-CCCCCChhhhCCCCcC
Q 001951 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA--LGDI--AIIGNLKKLEILSLVDS-NIEQLPEEMAQLTQLR 204 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~L~~~-~l~~LP~~i~~L~~L~ 204 (992)
.+....|...+.++.+..++.+..+ +.|++|-+.++. +..+ ..|..++.|++||+++| .+.+||.+|++|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3446678888888888877766544 378888888886 5555 44888999999999987 7889999999999999
Q ss_pred EEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC
Q 001951 205 LFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 205 ~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
+|+++++. +..+|.+ +++|..|.+|++..+... ...+..+..|++||+|.+....
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 99999998 9999999 899999999998876543 2234556669999999987654
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=1.7e-13 Score=140.83 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred CCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCc
Q 001951 557 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 636 (992)
Q Consensus 557 ~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 636 (992)
..|+.|.+++|....+-.-....++++++++|.+.+|.++++..-...+ -.++.|++|.+..|+++++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla------~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA------RYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH------HhcchhhhhhhcccchhHHHHHHHH
Confidence 3577888888877666534445667888888888888877665321100 1678888888888888876554333
Q ss_pred ccCCCcccEEEEecCCccee
Q 001951 637 TSKWPMLKKLEVYGCDKVKI 656 (992)
Q Consensus 637 ~~~~~sL~~L~i~~C~~L~~ 656 (992)
...|++|++|+++.|+.++.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHhhhhHHHhhhccCchhhc
Confidence 34689999999999988774
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=2.2e-13 Score=139.93 Aligned_cols=93 Identities=24% Similarity=0.284 Sum_probs=47.9
Q ss_pred cCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCC
Q 001951 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGT 635 (992)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 635 (992)
.|++++|.+.+|.++++..-.++...++.|+.|++..|.+++...-.... -.+++|++|.++.|+.+..-....
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la------~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA------EGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH------HhhhhHHHhhhccCchhhcCcchH
Confidence 45666666666666555433344445566666666666666554322000 046666666666666655422112
Q ss_pred cccCCCcccEEEEecCCcc
Q 001951 636 HTSKWPMLKKLEVYGCDKV 654 (992)
Q Consensus 636 ~~~~~~sL~~L~i~~C~~L 654 (992)
...++..++++..++|..+
T Consensus 237 ~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 237 LQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred Hhccchhhhhhhhcccccc
Confidence 2223445555555566544
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=7.5e-11 Score=112.44 Aligned_cols=131 Identities=23% Similarity=0.250 Sum_probs=54.3
Q ss_pred cCCCCCcEEEeeCCcCccCCcccC-CCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhh-hCCCCcCEEe
Q 001951 130 AGMSNLRGLALSNMQFLSLPSLFH-LPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLFD 207 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~-~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i-~~L~~L~~L~ 207 (992)
.+...+|.|+|.++.|+.+. .++ .+.+|+.|++++|.|+.++.+..+++|++|++++|.|++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556788888888888764 465 57888888888888888888888899999999999888887666 4688899999
Q ss_pred ecCCCCCCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeec
Q 001951 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (992)
Q Consensus 208 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (992)
+++|. +.++.. ..++.+++|++|++.+|.+. ........-+..+++|+.||-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCEE
Confidence 98886 655432 12667888999999888875 23344556677788888887653
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1e-11 Score=132.59 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=120.9
Q ss_pred CCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccC
Q 001951 87 NCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDR 165 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~ 165 (992)
.....+++.|++..+|... .+..|..+.+..|.+. .+|.. ..++..|.+|+|+.|++..+|..++.|+ |++|.+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3445566666666666655 4566666666666554 45543 4677777777777777777777776653 77777777
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
|+++.+ ..++.+.+|..||.+.|.+..+|..++.|.+|+.|++..|. +..+|.+ ++.| .|..|+++.|.+.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis----- 224 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS----- 224 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee-----
Confidence 777765 67777777777777777777777777777777777777776 6777776 5533 5677777777664
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL 280 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 280 (992)
..+..+.+|++|++|.+.+|-+..-|..+
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 45667777777777777777766666655
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.1e-10 Score=109.44 Aligned_cols=137 Identities=24% Similarity=0.342 Sum_probs=52.5
Q ss_pred eeCCcCccCCcccCCCCCCcEEEccCCCCCCccccc-CcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccC
Q 001951 140 LSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIG-NLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIP 218 (992)
Q Consensus 140 Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p 218 (992)
++.+.|+..|. +.+..++|.|+|++|.|+.++.++ .+.+|++||+++|.|++++ ++..+.+|++|++++|. ++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 44555666664 456668999999999999998888 6899999999999999997 68999999999999998 99987
Q ss_pred ccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc-----ccCCccEEE
Q 001951 219 PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-----FSKKLERYK 289 (992)
Q Consensus 219 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l~ 289 (992)
.+....+++|++|++++|.+.. -..+..++.+++|+.|++.+|.+...+..- .+++|+.|+
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~----------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISD----------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---S----------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cchHHhCCcCCEEECcCCcCCC----------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6522468999999999998861 124678889999999999999876554321 456666664
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=5.7e-11 Score=116.59 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=140.1
Q ss_pred cCCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCC---CcChh-------------------hhcCCCCCcEEEe
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSI---KIPNH-------------------VFAGMSNLRGLAL 140 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~---~~~~~-------------------~~~~l~~Lr~L~L 140 (992)
+.+++..+-++.++-+.+.... .-+.|.++.+.+..... -+|.. .....+.|..+||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 3566777777766554443322 34667777765432210 01110 0123457899999
Q ss_pred eCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCcc
Q 001951 141 SNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPN 220 (992)
Q Consensus 141 s~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~ 220 (992)
|+|.|+.+-+++.-++.+|+|++++|.+..+.++..|++|+.||+++|.+.++-..-.+|-|.++|.+++|. +..+..
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG- 369 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG- 369 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-
Confidence 999999999999999999999999999999988999999999999999999887777889999999999998 888875
Q ss_pred ccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 221 LLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 221 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
+++|-+|..|++.+|.+.. -.....+++++.|+++.+.+|.+..++.
T Consensus 370 -L~KLYSLvnLDl~~N~Ie~----------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 370 -LRKLYSLVNLDLSSNQIEE----------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhheeccccccchhh----------HHHhcccccccHHHHHhhcCCCccccch
Confidence 8999999999999998761 1235678999999999999987765544
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=2.1e-10 Score=125.72 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=73.2
Q ss_pred CCCEEEeecCCCc-----ccCCCC-CCCCccEEEcCCCCCCC--C---cChhhhcCCCCCcEEEeeCCcCc-cCCcccCC
Q 001951 87 NCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSI--K---IPNHVFAGMSNLRGLALSNMQFL-SLPSLFHL 154 (992)
Q Consensus 87 ~~r~l~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~--~---~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~ 154 (992)
.++.+.+.++.+. .++..+ ..+.++.+++.++.... . .....|..+++|+.|+++++.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 3556666665542 222222 34556666665554331 0 01123455566666666666554 22222322
Q ss_pred C---CCCcEEEccCCCCCC-----c-ccccCc-ccCcEEEccCCCCC-----CCChhhhCCCCcCEEeecCCCCCCc---
Q 001951 155 P---LNLQTLCLDRCALGD-----I-AIIGNL-KKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKV--- 216 (992)
Q Consensus 155 l---~~Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~L~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~l~~--- 216 (992)
+ ++|++|++++|.+.. + ..+..+ ++|+.|++++|.+. .++..+..+.+|++|++++|. +..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence 2 236666666665541 1 334444 56666666666555 233345555566666666654 331
Q ss_pred --cCccccCCCCCCCEEEeecCcc
Q 001951 217 --IPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 217 --~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
++.. +..+++|++|++++|.+
T Consensus 183 ~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 183 RALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHH-HHhCCCCCEEeccCCcc
Confidence 2222 33445666666665554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2e-11 Score=130.30 Aligned_cols=187 Identities=22% Similarity=0.313 Sum_probs=140.4
Q ss_pred EEEeecCCCcccCCC---CCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 90 TIFLHDCKHWEVPEG---LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 90 ~l~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
.+.+++-.+.++|.. .++..-...+++.|.+. .+|.. +..+..|..+.|+.|.+..+|.+++++..|.||+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 344444445555532 25556666777777776 67765 36667788888888888888888888888888888888
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccc
Q 001951 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
++..+ ..++.|+ |++|-+++|+++.+|.+|+-+.+|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 88766 5555543 888888888888888888888888888888887 8888887 788888888888877764
Q ss_pred ccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc-ccCCccEEEEEeCC
Q 001951 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~ 294 (992)
..+.++..|+ |..||++.|++..+|..+ .+..|+.+.+..+.
T Consensus 203 ------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4677777665 788888888888888887 77888888776544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=4.5e-10 Score=123.14 Aligned_cols=173 Identities=23% Similarity=0.238 Sum_probs=119.4
Q ss_pred CCCEEEeecCCCcccC-------CCC-CCCCccEEEcCCCCCCCCcChhhhcCCC---CCcEEEeeCCcCc-----cCCc
Q 001951 87 NCPTIFLHDCKHWEVP-------EGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMS---NLRGLALSNMQFL-----SLPS 150 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~-------~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~---~Lr~L~Ls~~~i~-----~lp~ 150 (992)
.++++.+..+.+...+ ..+ .+++|+.|++++|.+....+ ..|..+. +|++|++++|.+. .+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 4666777665544211 112 57899999999988763333 2334444 4999999999876 2345
Q ss_pred ccCCC-CCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCC-----CCChhhhCCCCcCEEeecCCCCCCcc-
Q 001951 151 LFHLP-LNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVI- 217 (992)
Q Consensus 151 ~i~~l-~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~l~~~- 217 (992)
++..+ ++|+.|++++|.+.. + ..+..+.+|++|++++|.+. .++..+..+.+|++|++++|. +...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHH
Confidence 66777 899999999999872 2 45677789999999999887 345567777899999999997 5422
Q ss_pred ----CccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhc-----CCCCCCEEEeeccCC
Q 001951 218 ----PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-----LLSHLTTLEIQICDA 273 (992)
Q Consensus 218 ----p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~ 273 (992)
+.. +..+++|++|++++|.+. +..+..+. ....|++|++.+|.+
T Consensus 210 ~~~l~~~-~~~~~~L~~L~ls~n~l~-----------~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 210 ASALAET-LASLKSLEVLNLGDNNLT-----------DAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHH-hcccCCCCEEecCCCcCc-----------hHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 222 567788999999988765 11122221 236788888877754
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=3.2e-10 Score=111.40 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEcc
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLV 186 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~ 186 (992)
+.|.++++++|.+. .+..+ .+-.+.+|+|++|.|.+..+-. +..|++|..|||++|.+..+ .--.+|-|.++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44556666665544 33333 2445556666666666655432 55566666666666665544 223355566666666
Q ss_pred CCCCCCCChhhhCCCCcCEEeecCCCCCCccCc-cccCCCCCCCEEEeecCccc
Q 001951 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 187 ~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~ 239 (992)
+|.++.+. ++++|++|..||+++|+ +.++.. ..||+|+.|+++.+.+|.+.
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66655553 55666666666666665 443321 11566666666666666554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=8.3e-09 Score=116.44 Aligned_cols=188 Identities=26% Similarity=0.306 Sum_probs=133.7
Q ss_pred EEeecCCC-cccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCC-CCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCC
Q 001951 91 IFLHDCKH-WEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMS-NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCAL 168 (992)
Q Consensus 91 l~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l 168 (992)
+....+.+ .........+.++.|.+.+|.+. +++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 45555544 22333335577888888887766 565542 3443 78888888888888877788888888888888888
Q ss_pred CCcc-cccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccccc
Q 001951 169 GDIA-IIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (992)
Q Consensus 169 ~~l~-~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (992)
..++ ..+.+.+|+.|++++|.+..+|..++.+.+|++|.+++|. ...++.. +.++.++..|.+.++.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------
Confidence 8774 4448888888888888888888877778888888888885 4444444 678888888876666543
Q ss_pred CCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCC
Q 001951 248 GRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (992)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (992)
..+..++.+.+++.|+++.|.+..++......+++.+++..+.
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccCcc
Confidence 1256677777788888888888777764466777777765443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.4e-08 Score=114.53 Aligned_cols=169 Identities=29% Similarity=0.387 Sum_probs=99.0
Q ss_pred cCCCCCcEEEeeCCcCccCCcccCCCC-CCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEe
Q 001951 130 AGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFD 207 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~ 207 (992)
..++.++.|++.++.+..+|...+.+. +|++|++++|.+..+ ..++.+++|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344566666666666666666666664 677777766666665 566666777777777766666666666666666677
Q ss_pred ecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc-ccCCcc
Q 001951 208 LSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLE 286 (992)
Q Consensus 208 l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~ 286 (992)
+++|. +..+|.. ++.+..|++|.+++|... ..+..+.++.++..+.+..+....++..+ .+..++
T Consensus 193 ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 193 LSGNK-ISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258 (394)
T ss_pred ccCCc-cccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCceeeeccchhccccccc
Confidence 76666 6666654 345555666666666321 23445556666666666655554433333 444566
Q ss_pred EEEEEeCCccCc--cCCcCcceEEEeec
Q 001951 287 RYKIFIGDEWDW--SGNYKNKRVLKLKL 312 (992)
Q Consensus 287 ~l~l~~~~~~~~--~~~~~~l~~l~l~~ 312 (992)
.+++..+.+-.+ .+....++.+.+..
T Consensus 259 ~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 259 TLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred eeccccccccccccccccCccCEEeccC
Confidence 666554444222 23334444544443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.5e-08 Score=103.96 Aligned_cols=199 Identities=21% Similarity=0.166 Sum_probs=134.2
Q ss_pred CCCCCEEEeecCCCcccCC--CC-CCCCccEEEcCCCCCCCC-cChhhhcCCCCCcEEEeeCCcCccCCcc--cCCCCCC
Q 001951 85 LKNCPTIFLHDCKHWEVPE--GL-EYPQLEFFCMSPRDHSIK-IPNHVFAGMSNLRGLALSNMQFLSLPSL--FHLPLNL 158 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~l~~L 158 (992)
.+++|.+++.++.+...+. .. .|+++|.|+++.|-+..- .--.+...+++|+.|+++.|.+...-++ -..+.||
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 6788999999888765553 22 789999999998865421 1124567899999999999987643322 2357899
Q ss_pred cEEEccCCCCC--Cc-ccccCcccCcEEEccCCC-CCCCChhhhCCCCcCEEeecCCCCCCccC--ccccCCCCCCCEEE
Q 001951 159 QTLCLDRCALG--DI-AIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIP--PNLLSGLSRLEDLY 232 (992)
Q Consensus 159 r~L~L~~~~l~--~l-~~i~~L~~L~~L~L~~~~-l~~LP~~i~~L~~L~~L~l~~~~~l~~~p--~~~i~~L~~L~~L~ 232 (992)
+.|.++.|+++ ++ .....+++|+.|++.+|. +..--.+...+..|+.|||++|. +..++ .. ++.++.|+.|+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~-~~~l~~L~~Ln 277 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYK-VGTLPGLNQLN 277 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccc-cccccchhhhh
Confidence 99999999987 34 555678899999999984 33223345667889999999987 55544 22 68888999998
Q ss_pred eecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc---ccCCccEEEE
Q 001951 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL---FSKKLERYKI 290 (992)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~l 290 (992)
++.+.+..-. ..+.........+.+|+.|++..|.+...+.-- .+++|++|.+
T Consensus 278 ls~tgi~si~-----~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 278 LSSTGIASIA-----EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccCcchhc-----CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 8887765110 111122333456778888888888775444321 3344444443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=98.43 Aligned_cols=180 Identities=21% Similarity=0.232 Sum_probs=132.2
Q ss_pred ccCCCCCEEEeecCCCcccCCC---C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc--cCCcccCCCC
Q 001951 83 DMLKNCPTIFLHDCKHWEVPEG---L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPL 156 (992)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~---~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~i~~l~ 156 (992)
....++|.|+++.|-+...... . .+++|+.|.++.|.+..-.....=..+++|+.|.+++|.++ .+-.-...++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 4577999999999866543322 2 68999999999998754333332346789999999999987 3333455678
Q ss_pred CCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCC--hhhhCCCCcCEEeecCCCCCCcc--Ccc----ccCCCC
Q 001951 157 NLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVI--PPN----LLSGLS 226 (992)
Q Consensus 157 ~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP--~~i~~L~~L~~L~l~~~~~l~~~--p~~----~i~~L~ 226 (992)
+|..|+|.+|..... .+..-+..|+.|||++|.+...+ .-++.++.|+.|+++.|. +.++ |+. .....+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccc
Confidence 999999999962222 55667899999999999988777 458999999999999987 6654 321 024678
Q ss_pred CCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
+|+.|++..|.+. +-....++..+.+|+.|.+..+.+
T Consensus 302 kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccc----------cccccchhhccchhhhhhcccccc
Confidence 9999999999874 112455666777778877776654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=3.2e-07 Score=71.73 Aligned_cols=58 Identities=33% Similarity=0.425 Sum_probs=34.5
Q ss_pred CccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCC
Q 001951 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 167 (992)
+|++|++.+|.+. .++..+|.++++|++|++++|.++.+| .+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666665544 555555666666666666666666554 355666666666666554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=4.2e-07 Score=71.02 Aligned_cols=58 Identities=33% Similarity=0.575 Sum_probs=34.9
Q ss_pred cCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCc
Q 001951 179 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (992)
Q Consensus 179 ~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (992)
+|++|++++|++..+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666666653 45566666666666655 566665556666666666666553
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1.7e-06 Score=102.16 Aligned_cols=104 Identities=27% Similarity=0.446 Sum_probs=89.2
Q ss_pred CCcEEEeeCCcCc-cCCcccCCCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEccCCCCC-CCChhhhCCCCcCEEeec
Q 001951 134 NLRGLALSNMQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLS 209 (992)
Q Consensus 134 ~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~L~~~~l~-~LP~~i~~L~~L~~L~l~ 209 (992)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+ ..++.+++|++||+++|.+. .+|..+++|.+|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 78899999999999999999986 44 68999999999999999988 789999999999999999
Q ss_pred CCCCCCccCccccCC-CCCCCEEEeecCcc
Q 001951 210 GCSKLKVIPPNLLSG-LSRLEDLYMGNTSV 238 (992)
Q Consensus 210 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~~ 238 (992)
+|.....+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99855688877 554 35778888887754
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=1.3e-06 Score=93.67 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=25.7
Q ss_pred ccccEEEeecCCCCcccHHHHhhCCCCcEEEEE-cceeEEEccChhhhhhhhhccccceEecCCccccccc
Q 001951 714 RNLKNLEVVNDESENFRIGFLERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYI 783 (992)
Q Consensus 714 ~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 783 (992)
..++.|++.+|....+| .-.++|+.|.++ |++++.+.. ...++|+.|.+.+|..+..+
T Consensus 52 ~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~--------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 52 RASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPG--------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred cCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCc--------hhhhhhhheEccCccccccc
Confidence 44555555555322444 112345555555 555543311 11234555555555444433
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1e-07 Score=107.49 Aligned_cols=122 Identities=25% Similarity=0.275 Sum_probs=65.1
Q ss_pred CCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
+..+++..|.+..+...+ .+++++.|++.+|.+. .+... +..+.+|++|++++|.|+.+. .+..+..|+.|++++|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 333344444444322212 4555666666555544 23221 345566666666666666553 3455555666666666
Q ss_pred CCCCcccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCC
Q 001951 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (992)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~ 212 (992)
.|..+..+..++.|+.+++++|.+..++.. ...+.+++.+++.+|.
T Consensus 151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 151 LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666665555566666666666665555432 3555566666666554
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.1e-06 Score=101.33 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCcEEEccCCCCCC-c-ccccCcccCcEEEccCCCCC-CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEe
Q 001951 157 NLQTLCLDRCALGD-I-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (992)
Q Consensus 157 ~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~-~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (992)
.++.|+|++|.+.. + ..++++++|++|+|++|.+. .+|..++++.+|++|++++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999873 3 78999999999999999987 89999999999999999999844577877 899999999999
Q ss_pred ecCcccccccccccCCCCCChhhhcCC-CCCCEEEeeccC
Q 001951 234 GNTSVKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICD 272 (992)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 272 (992)
++|.+. +..+..++.+ .++..+++.+|.
T Consensus 498 s~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS-----------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence 999876 4456666653 467788888776
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=4.4e-06 Score=89.80 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=90.2
Q ss_pred HhhCCCCcEEEEE-cceeEEEccChhhhhhhhhccccceEecCCccccccccccCCCcccccccccEEEEeccCCccccc
Q 001951 734 LERFHNLEKLELR-WSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV 812 (992)
Q Consensus 734 l~~l~~L~~L~i~-c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 812 (992)
+..+.+++.|+|+ | .+++++. ..++|++|.+++|.+++.+++ ..+++|++|.+++|.++.++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCcccccccc
Confidence 5557889999999 6 7776632 245799999999988888754 224688999999988887776
Q ss_pred CCccccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCcchhhhhccCccccccccccccccccccccCCccccc
Q 001951 813 PSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSF 892 (992)
Q Consensus 813 ~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 892 (992)
. +|+.|++. |..+..+. .++ ++|++|.+.++....... .+...+++|++|.+.+|..+. +
T Consensus 112 ~------sLe~L~L~-~n~~~~L~--~LP---ssLk~L~I~~~n~~~~~~-------lp~~LPsSLk~L~Is~c~~i~-L 171 (426)
T PRK15386 112 E------SVRSLEIK-GSATDSIK--NVP---NGLTSLSINSYNPENQAR-------IDNLISPSLKTLSLTGCSNII-L 171 (426)
T ss_pred c------ccceEEeC-CCCCcccc--cCc---chHhheeccccccccccc-------cccccCCcccEEEecCCCccc-C
Confidence 4 47777775 33333331 222 567788875432111000 001235789999999988664 4
Q ss_pred cCCCccccCCCccEEEEcccc
Q 001951 893 CSGNYTLKFPSLEDLFVIECP 913 (992)
Q Consensus 893 ~~~~~~~~~~sL~~L~i~~C~ 913 (992)
|.+ -+.+|+.|++..+.
T Consensus 172 P~~----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 172 PEK----LPESLQSITLHIEQ 188 (426)
T ss_pred ccc----ccccCcEEEecccc
Confidence 432 14689999987753
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=2.6e-07 Score=104.21 Aligned_cols=106 Identities=27% Similarity=0.361 Sum_probs=53.8
Q ss_pred cCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeec
Q 001951 130 AGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~ 209 (992)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|..+..+..+..|+.|++++|.|..++ ++..++.|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44555555555555555554334555555555555555555555555555555555555555443 23335555555555
Q ss_pred CCCCCCccCc-cccCCCCCCCEEEeecCcc
Q 001951 210 GCSKLKVIPP-NLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 210 ~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 238 (992)
+|. +..+.. . +..+.+++.+++.+|.+
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 554 444433 1 13444555555554443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.6e-06 Score=59.86 Aligned_cols=39 Identities=41% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcc
Q 001951 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIA 172 (992)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~ 172 (992)
+|++|++++|+|+.+|..+++|++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666655666666666666666655443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.3e-07 Score=91.81 Aligned_cols=115 Identities=24% Similarity=0.213 Sum_probs=61.1
Q ss_pred cccccccEEEEeccCCcccccCC--ccccCCcCEEEEcCCCCC-cccchhHhhhccCCccEEEEccCcchhhhhccCccc
Q 001951 792 SITENLESLEVWWCENLINLVPS--SASFKNLTTLELWYCQRL-MNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDV 868 (992)
Q Consensus 792 ~~l~~L~~L~i~~c~~l~~l~~~--~~~~~~L~~L~i~~C~~L-~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~ 868 (992)
..+++|++|+++.|.-.+..... .+--..|+.|++++|.+- ..--.....+.+++|..|++++|.+++.-+..+
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~--- 333 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--- 333 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH---
Confidence 44555555555555544221110 112245777777776432 211123345666777777777777665422222
Q ss_pred cccccccccccccccccCCccccccCCCccccCCCccEEEEcccc
Q 001951 869 AEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECP 913 (992)
Q Consensus 869 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~ 913 (992)
...|+.|++|.++.|-.+----. ....+.|+|.+|+|.+|-
T Consensus 334 ---~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 ---FFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---HHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 22577777777777764421100 011346788888888875
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.9e-06 Score=58.40 Aligned_cols=41 Identities=37% Similarity=0.599 Sum_probs=26.4
Q ss_pred ccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCc
Q 001951 178 KKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (992)
Q Consensus 178 ~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~ 219 (992)
++|++|++++|.|+.+|..+++|++|++|++++|. +++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 35667777777777777667777777777777776 665543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=9.2e-08 Score=105.61 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=124.5
Q ss_pred CCCCCEEEeecCCCcccCCCCC-CCCccEEEcCCCCC---------CCCcChhhhcCCCCCcEEEeeCCcCccCCcccCC
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLE-YPQLEFFCMSPRDH---------SIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL 154 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~---------~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~ 154 (992)
.+.+|+|-+.++++........ -..|++|+..+.-. .+++.+.. .-..|.+-+++.|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 5688888888887765332221 13455554432110 01111110 123477888888988888888888
Q ss_pred CCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEe
Q 001951 155 PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (992)
Q Consensus 155 l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (992)
+++||.|||++|++.+...+..+.+|++|||++|.+..+|. +..... |+.|++++|. ++.+-. +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 99999999999999988899999999999999999998886 333344 9999999998 888765 889999999999
Q ss_pred ecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
++|-+. ....+.-|..|..|+.|.+.+|.+
T Consensus 262 syNll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYNLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHhhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 998765 122355567777888899988865
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.9e-07 Score=90.25 Aligned_cols=85 Identities=26% Similarity=0.225 Sum_probs=49.5
Q ss_pred cCcEEEccCCCCC--CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhh
Q 001951 179 KLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 256 (992)
Q Consensus 179 ~L~~L~L~~~~l~--~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (992)
.||+|||++..|+ .+-.-+..+.+|+.|.+.+..--..+-.. |.+-.+|+.|+++.+.-- ...+.---
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~---------t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF---------TENALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc---------chhHHHHH
Confidence 4777777777665 34444566677777777776522223323 566677777777765311 01112223
Q ss_pred hcCCCCCCEEEeeccCC
Q 001951 257 LKLLSHLTTLEIQICDA 273 (992)
Q Consensus 257 l~~l~~L~~L~l~~~~~ 273 (992)
+.+++.|..|+++||..
T Consensus 256 ~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHhhhhHhhcCchHhhc
Confidence 56677777777777764
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=3.4e-06 Score=99.01 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=80.6
Q ss_pred CCCccEEEcCCCCC-CCCcChhhhcCCCCCcEEEeeCCcCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEE
Q 001951 107 YPQLEFFCMSPRDH-SIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEIL 183 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 183 (992)
-.+|+.|++.+... ....+..+-..++.||.|.+++-.+. .+-.-..++++|+.||+|+++++.+..+++|+|||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35666777665432 22344455556777777777776543 2222344567777777777777777777777777777
Q ss_pred EccCCCCCCCC--hhhhCCCCcCEEeecCCCCCCcc--Cc---cccCCCCCCCEEEeecCccc
Q 001951 184 SLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVI--PP---NLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 184 ~L~~~~l~~LP--~~i~~L~~L~~L~l~~~~~l~~~--p~---~~i~~L~~L~~L~l~~~~~~ 239 (992)
.+.+-.+..-. .++.+|++|++||+|...+...- .. +.-..|++|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77765555332 35677777777777765422211 10 00134788888888877654
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=2.7e-06 Score=86.76 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=48.3
Q ss_pred CCCCccEEEcCCCCCCCC---cChhhhcCCCCCcEEEeeCCcC----ccCCc-------ccCCCCCCcEEEccCCCCC--
Q 001951 106 EYPQLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQF----LSLPS-------LFHLPLNLQTLCLDRCALG-- 169 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~Ls~~~i----~~lp~-------~i~~l~~Lr~L~L~~~~l~-- 169 (992)
....++.+++++|.+... .....+.+.+.||.-++++-.- ..+|+ ++-..++|++||||+|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456677777777765421 1223355666777777765421 13343 2344557777777777543
Q ss_pred ---Cc-ccccCcccCcEEEccCCCCC
Q 001951 170 ---DI-AIIGNLKKLEILSLVDSNIE 191 (992)
Q Consensus 170 ---~l-~~i~~L~~L~~L~L~~~~l~ 191 (992)
.+ .-+...+.|++|.|.+|++.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 11 34455666666666666654
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.83 E-value=8.7e-07 Score=103.54 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=49.0
Q ss_pred cCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEecc-ccccccccccccccccceeecCccCccccccCCccceecCC
Q 001951 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYC-SSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPG 634 (992)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c-~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 634 (992)
.+.|+.|.+.+|..+....-......++.|++|++++| ......+.... .....+++|+.|++..|..+++....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL----LLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh----hhhhhcCCcCccchhhhhccCchhHH
Confidence 46677777777766665321234556677777777763 22221110000 00113456666666666655544332
Q ss_pred CcccCCCcccEEEEecCCcce
Q 001951 635 THTSKWPMLKKLEVYGCDKVK 655 (992)
Q Consensus 635 ~~~~~~~sL~~L~i~~C~~L~ 655 (992)
.....|++|+.|.+.+|+.++
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHhhCCCcceEccCCCCccc
Confidence 222236667777766666543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=1e-05 Score=95.13 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCCcEEEeeCCcCc--cCCcccCC-CCCCcEEEccCCCCC--Cc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEE
Q 001951 133 SNLRGLALSNMQFL--SLPSLFHL-PLNLQTLCLDRCALG--DI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (992)
Q Consensus 133 ~~Lr~L~Ls~~~i~--~lp~~i~~-l~~Lr~L~L~~~~l~--~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L 206 (992)
.+|++||++|...- .-|..++. |++||.|.+++-.+. +. .-..++++|..||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56888888775422 22334444 578888888776543 22 4456778888888888888777 678888888888
Q ss_pred eecCCCCCCccC--ccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 207 DLSGCSKLKVIP--PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 207 ~l~~~~~l~~~p--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
.+.+-. +.... .+ +-+|++|++||++......... ....-.+.-..|++||.||.+++.+
T Consensus 201 ~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLID-LFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCC-CCchhhHHH-HhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence 776544 32211 12 5678888888877654320000 0000112223477788888887664
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.77 E-value=2.8e-06 Score=86.69 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=104.3
Q ss_pred CCCEEEeecCCCc-ccCC----CC-CCCCccEEEcCCCCCCCC---c---------ChhhhcCCCCCcEEEeeCCcCccC
Q 001951 87 NCPTIFLHDCKHW-EVPE----GL-EYPQLEFFCMSPRDHSIK---I---------PNHVFAGMSNLRGLALSNMQFLSL 148 (992)
Q Consensus 87 ~~r~l~l~~~~~~-~l~~----~~-~~~~Lr~L~l~~~~~~~~---~---------~~~~~~~l~~Lr~L~Ls~~~i~~l 148 (992)
+++.+++++|.+. ..++ .+ .+..|+.|.+.+|.+... . -.....+-..|||++..+|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6677777777552 1111 11 467777777777664311 0 001123445677777777776543
Q ss_pred C-----cccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCC-----CChhhhCCCCcCEEeecCCC
Q 001951 149 P-----SLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 149 p-----~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i~~L~~L~~L~l~~~~ 212 (992)
+ ..|...+.|+.+.+..|.|.. + ..+..++||++|||..|-++. +-..+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 345566777777777777652 1 566777778888887775552 33445666777777777775
Q ss_pred CCCccC-----ccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 213 KLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 213 ~l~~~p-----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
++.-. ...-...++|++|.+.+|.++.... ......+...+.|+.|++.+|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-------~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-------LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHHHH-------HHHHHHHhcchhhHHhcCCcccc
Confidence 43221 1111345677777777777662211 22333455567777777777765
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.66 E-value=5.4e-06 Score=96.81 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=20.9
Q ss_pred cccccEEEeecCCCC--cccHHHHhhCCCCcEEEEE-ccee
Q 001951 713 FRNLKNLEVVNDESE--NFRIGFLERFHNLEKLELR-WSSY 750 (992)
Q Consensus 713 ~~~L~~L~i~~c~~~--~~~~~~l~~l~~L~~L~i~-c~~l 750 (992)
+++|+.|.+.+|..+ ..-....+.+++|++|+++ |..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 455666665556543 1112344456667777766 6555
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=8.4e-07 Score=98.27 Aligned_cols=123 Identities=25% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEc
Q 001951 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCL 163 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L 163 (992)
.++...+.+.|.+..+...+ -++.+++|+|++|.+. ++. ++..+.+|++|||+.|.+..+|. +...+ +|..|++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 34555556666555444444 2466666666666554 222 35566666666666666666654 22222 3666666
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCCC--hhhhCCCCcCEEeecCCC
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP--~~i~~L~~L~~L~l~~~~ 212 (992)
++|.++.+..+.+|++|+.||+++|-+...- .-++.|..|+.|.|.+|.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666666666443221 124555566666666654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=9.5e-05 Score=69.84 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=83.5
Q ss_pred cEEEeeCCcCccCCcccCC-CCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCC-CCcCEEeecCCCC
Q 001951 136 RGLALSNMQFLSLPSLFHL-PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQL-TQLRLFDLSGCSK 213 (992)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~-l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L-~~L~~L~l~~~~~ 213 (992)
|.++|.+..+..+-. ++- +.+.-.+||++|.+..+..+..+..|.+|.+.+|.|..+-..+..+ .+|+.|.+.+|+
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs- 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS- 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-
Confidence 445555544432211 221 2456677777777777777788888888888888888776565544 468888888876
Q ss_pred CCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC
Q 001951 214 LKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 214 l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
+.++.+ +-+..++.|++|.+-+|.+. .+.+...--+..+++|+.||.....
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~--------~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVE--------HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchh--------cccCceeEEEEecCcceEeehhhhh
Confidence 554422 11567788888888888765 4445566667788888888887543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00017 Score=68.25 Aligned_cols=102 Identities=22% Similarity=0.324 Sum_probs=66.7
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCC-CCCCcEEEccCCCCCC---cccccCcccCcEE
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHL-PLNLQTLCLDRCALGD---IAIIGNLKKLEIL 183 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~-l~~Lr~L~L~~~~l~~---l~~i~~L~~L~~L 183 (992)
.....+++.+|.+. .++ .|..++.|.+|.+.+|+|..+-..+.. +++|..|.|.+|.|.. +..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 44556666666543 222 266777777777777777776555544 3567777777777653 3556667777788
Q ss_pred EccCCCCCCCCh----hhhCCCCcCEEeecCCC
Q 001951 184 SLVDSNIEQLPE----EMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 184 ~L~~~~l~~LP~----~i~~L~~L~~L~l~~~~ 212 (992)
.+-+|.++.-+. -+.++++|++||..+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777776665542 36778888888877643
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=1.5e-05 Score=70.04 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=41.4
Q ss_pred CCCCCcEEEeeCCcCccCCcccCCC-CCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEee
Q 001951 131 GMSNLRGLALSNMQFLSLPSLFHLP-LNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDL 208 (992)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~i~~l-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l 208 (992)
...+|...+|++|.++.+|+.|... +....|++.+|.|.++ ..+..++.|+.|+++.|.+...|+.|..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3344555555555555555444322 2445555555554433 3344445555555555544444444444444444444
Q ss_pred cCCCCCCccC
Q 001951 209 SGCSKLKVIP 218 (992)
Q Consensus 209 ~~~~~l~~~p 218 (992)
.++. ...+|
T Consensus 131 ~~na-~~eid 139 (177)
T KOG4579|consen 131 PENA-RAEID 139 (177)
T ss_pred CCCc-cccCc
Confidence 4444 33443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00015 Score=72.47 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=16.1
Q ss_pred CCCcEEEccCCCCCCc----ccccCcccCcEEEccCC
Q 001951 156 LNLQTLCLDRCALGDI----AIIGNLKKLEILSLVDS 188 (992)
Q Consensus 156 ~~Lr~L~L~~~~l~~l----~~i~~L~~L~~L~L~~~ 188 (992)
.+++.|||.+|.|++- .-+.+|++|++|+++.|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 4555555555555432 22234455555555544
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=2.5e-05 Score=68.65 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=84.9
Q ss_pred CCEEEeecCCCcccCCC----CCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 88 CPTIFLHDCKHWEVPEG----LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
...++++.+.+-.+++. .....|....+++|.+. ++|..+-..++.+..|++++|.+..+|..+..++.||.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34555666655444332 25677888888888876 68877766777899999999999999999999999999999
Q ss_pred cCCCCCC-cccccCcccCcEEEccCCCCCCCChh
Q 001951 164 DRCALGD-IAIIGNLKKLEILSLVDSNIEQLPEE 196 (992)
Q Consensus 164 ~~~~l~~-l~~i~~L~~L~~L~L~~~~l~~LP~~ 196 (992)
+.|.+.. +..|..|.+|-+||..++.+.++|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999764 47777899999999999988888865
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00022 Score=71.26 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=46.2
Q ss_pred CCCCCcEEEeeCCcCcc---CCcccCCCCCCcEEEccCCCCCCc-ccc-cCcccCcEEEccCCCCC--CCChhhhCCCCc
Q 001951 131 GMSNLRGLALSNMQFLS---LPSLFHLPLNLQTLCLDRCALGDI-AII-GNLKKLEILSLVDSNIE--QLPEEMAQLTQL 203 (992)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~---lp~~i~~l~~Lr~L~L~~~~l~~l-~~i-~~L~~L~~L~L~~~~l~--~LP~~i~~L~~L 203 (992)
...+++.|||.+|.|+. +-.-+.++++|++|+++.|.+... .+. ..+.+|++|-|.++.+. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666552 222345566666666666665532 444 35566666666666433 444445566666
Q ss_pred CEEeecCCC
Q 001951 204 RLFDLSGCS 212 (992)
Q Consensus 204 ~~L~l~~~~ 212 (992)
+.|.++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=6.1e-05 Score=74.38 Aligned_cols=105 Identities=25% Similarity=0.348 Sum_probs=75.6
Q ss_pred CCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCc-cccCCCCCCCEEEe
Q 001951 155 PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYM 233 (992)
Q Consensus 155 l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l 233 (992)
+.+.+.|++.||.+.+++-+.+++.|++|.|+-|+|++|- .+..+++|+.|+|..|. +..+.+ ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 5566778888888888888888888888888888888874 47788888888888886 655543 12567888888888
Q ss_pred ecCcccccccccccCCCCCChhhhcCCCCCCEEE
Q 001951 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (992)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (992)
..|.... ....+....-|.-|++|+.||
T Consensus 96 ~ENPCc~------~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCG------EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCccc------ccchhHHHHHHHHcccchhcc
Confidence 8776541 111233445567777777776
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.68 E-value=0.00074 Score=66.71 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=23.2
Q ss_pred ccccCcccCcEEEccCCCCC-CCCh----hhhCCCCcCEEeecCCC
Q 001951 172 AIIGNLKKLEILSLVDSNIE-QLPE----EMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 172 ~~i~~L~~L~~L~L~~~~l~-~LP~----~i~~L~~L~~L~l~~~~ 212 (992)
+.+-++++|++.+||.|-+. +.|+ -|++-+.|.||.+++|.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455666666666666443 2332 34555666666666665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0013 Score=65.30 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCcEEEccCCCCCCcccccCcccCcEEEccCC--CCC-CCChhhhCCCCcCEEeecCCCCCC---ccCccccCCCCCCCE
Q 001951 157 NLQTLCLDRCALGDIAIIGNLKKLEILSLVDS--NIE-QLPEEMAQLTQLRLFDLSGCSKLK---VIPPNLLSGLSRLED 230 (992)
Q Consensus 157 ~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~--~l~-~LP~~i~~L~~L~~L~l~~~~~l~---~~p~~~i~~L~~L~~ 230 (992)
.|++|++.++.++.+..+-.|++|++|+++.| .+. .++.-..++.+|++|++++|. ++ .+++ +..+.+|..
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p--l~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP--LKELENLKS 120 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch--hhhhcchhh
Confidence 33344444444444444444444555555444 222 333333344555555555554 22 2222 344455555
Q ss_pred EEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC
Q 001951 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
|++.+|... .-....-.-+.-+++|..|+-....
T Consensus 121 Ldl~n~~~~--------~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCSVT--------NLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCCcc--------ccccHHHHHHHHhhhhccccccccC
Confidence 555555433 1111222334455566666555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.0057 Score=60.90 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=55.9
Q ss_pred hcCCCCCcEEEeeCC--cCc-cCCcccCCCCCCcEEEccCCCCCCc---ccccCcccCcEEEccCCCCCCCCh----hhh
Q 001951 129 FAGMSNLRGLALSNM--QFL-SLPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQLPE----EMA 198 (992)
Q Consensus 129 ~~~l~~Lr~L~Ls~~--~i~-~lp~~i~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~L~~~~l~~LP~----~i~ 198 (992)
|..+++|+.|.++.| ++. .++-....+++|++|++++|+|+.+ ..+..+.+|..||+..|....+-. -+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 345566666666666 322 3333344557777777777776654 445667777888888886665521 356
Q ss_pred CCCCcCEEeecCCCCCCccCc
Q 001951 199 QLTQLRLFDLSGCSKLKVIPP 219 (992)
Q Consensus 199 ~L~~L~~L~l~~~~~l~~~p~ 219 (992)
-+++|.+|+-.... -.+.|.
T Consensus 141 ll~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred HhhhhccccccccC-Cccccc
Confidence 67888888766654 344443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.71 E-value=0.0035 Score=36.90 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=12.8
Q ss_pred cCcEEEccCCCCCCCChhhhC
Q 001951 179 KLEILSLVDSNIEQLPEEMAQ 199 (992)
Q Consensus 179 ~L~~L~L~~~~l~~LP~~i~~ 199 (992)
+|++||+++|.++++|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665544
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.65 E-value=0.026 Score=51.87 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEcc
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLD 164 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~ 164 (992)
+++|+.+.+.. ... .+....|.+++.|+.+.+.++ +..++. +|..+.+|+++.+.
T Consensus 11 ~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 11 CSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 34455554432 111 344444555555555555443 443332 34444445555553
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.34 E-value=0.047 Score=50.19 Aligned_cols=106 Identities=21% Similarity=0.349 Sum_probs=64.9
Q ss_pred cChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhC
Q 001951 124 IPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQ 199 (992)
Q Consensus 124 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~ 199 (992)
++..+|.++++|+.+.+.. .+..+++ +|..+.+|+.+.+.++ +..+ ..+.+..+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5667789999999999875 5676754 6888888999999875 6655 5677787889998876 5655554 4566
Q ss_pred CCCcCEEeecCCCCCCccCccccCCCCCCCEEEeec
Q 001951 200 LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (992)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (992)
..+|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888888653 567777667776 888887654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.007 Score=35.59 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=15.6
Q ss_pred CCcEEEeeCCcCccCCcccCCC
Q 001951 134 NLRGLALSNMQFLSLPSLFHLP 155 (992)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~l 155 (992)
+|++||+++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888887777766543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0012 Score=65.45 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEcc
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLV 186 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~ 186 (992)
+.+.+.|++.++.+. +| .+..+|+.|+||.||-|.|+.+- .+..+++|+.|.|+.|.|.++..+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL------------ 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDEL------------ 81 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHH------------
Confidence 345555665555543 22 23456666666666666665552 244455555555555544433111
Q ss_pred CCCCCCCChhhhCCCCcCEEeecCCCCCCccCc----cccCCCCCCCEEE
Q 001951 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP----NLLSGLSRLEDLY 232 (992)
Q Consensus 187 ~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~ 232 (992)
.-+.++++||.|-|..|.-...-+. .++.-|++|+.|+
T Consensus 82 --------~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 --------EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred --------HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 1345555666666655542332222 1244566777766
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.0081 Score=57.28 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=23.2
Q ss_pred cCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEecccccccc
Q 001951 556 SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (992)
Q Consensus 556 l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i 599 (992)
+++++.|.+.+|..+.+..-..+.+-.++|+.|+|++|+.|++-
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 45566666666665554322222223456666666666665553
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.79 E-value=0.037 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=6.4
Q ss_pred cCcEEEccCCCCCCCC
Q 001951 179 KLEILSLVDSNIEQLP 194 (992)
Q Consensus 179 ~L~~L~L~~~~l~~LP 194 (992)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.012 Score=56.28 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred CCCcccccccccEEEEeccCCcccc--cCCccccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCc
Q 001951 787 DSKLDSITENLESLEVWWCENLINL--VPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 856 (992)
Q Consensus 787 ~~~~~~~l~~L~~L~i~~c~~l~~l--~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~ 856 (992)
|+.-+..+++++.|.+.+|..+... ---.+..++|+.|+|++|+++++-... .+..+++|+.|.|.+-+
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 3444455666666666666665311 111123455666666666666554322 33444555555555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.40 E-value=0.078 Score=28.83 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=6.9
Q ss_pred CCcEEEeeCCcCccCC
Q 001951 134 NLRGLALSNMQFLSLP 149 (992)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp 149 (992)
+||+|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666555544
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.17 E-value=0.0045 Score=59.95 Aligned_cols=80 Identities=16% Similarity=0.068 Sum_probs=42.0
Q ss_pred CCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEe
Q 001951 155 PLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYM 233 (992)
Q Consensus 155 l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 233 (992)
.+.-.+||++.|++..+ ..+..++.|..||++.+.+..+|.+++.+..++++++..|. ....|.. .++++.+++++.
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcchhhh
Confidence 33444444444444333 44444555555555555555555555555555555555554 5555555 455555555555
Q ss_pred ecC
Q 001951 234 GNT 236 (992)
Q Consensus 234 ~~~ 236 (992)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.83 E-value=0.008 Score=58.26 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=63.3
Q ss_pred hcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEe
Q 001951 129 FAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFD 207 (992)
Q Consensus 129 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~ 207 (992)
+..++...+||++.|++..+-..|+.+..|..|+++.+.+..+ .+++.+..++.+++..|..+.+|.++++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 3456667777777777766666677777777777777777655 677777778888888888888888888888888888
Q ss_pred ecCCC
Q 001951 208 LSGCS 212 (992)
Q Consensus 208 l~~~~ 212 (992)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 77765
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.70 E-value=0.2 Score=50.19 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCCccEEEcCCCCCCCCcCh---hhhcCCCCCcEEEeeCCcCccCCc-ccCC-CCCCcEEEccCCCCCCcccccCcccC
Q 001951 106 EYPQLEFFCMSPRDHSIKIPN---HVFAGMSNLRGLALSNMQFLSLPS-LFHL-PLNLQTLCLDRCALGDIAIIGNLKKL 180 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~-l~~Lr~L~L~~~~l~~l~~i~~L~~L 180 (992)
.|++|++.+++.|.+....|. +++++-..|.+|.+++|.+..+-. -|++ |.||-|. .-..+-+.|
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n----------KKaa~kp~L 159 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN----------KKAADKPKL 159 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH----------hhhccCCCc
Confidence 566666666666665544432 334555556666666665432211 0110 0111110 112234556
Q ss_pred cEEEccCCCCCCCChh-----hhCCCCcCEEeecCCCCCCccCccc-------cCCCCCCCEEEeecCcccccccccccC
Q 001951 181 EILSLVDSNIEQLPEE-----MAQLTQLRLFDLSGCSKLKVIPPNL-------LSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (992)
Q Consensus 181 ~~L~L~~~~l~~LP~~-----i~~L~~L~~L~l~~~~~l~~~p~~~-------i~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (992)
++.+...|.+..-|.. +..-.+|+++.+..|. ++ |.++ +..+.+|+.|++..|.++..+.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS----- 231 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS----- 231 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhhhhH-----
Confidence 6666666655554432 2222456666666554 22 2210 2345666677776666652211
Q ss_pred CCCCChhhhcCCCCCCEEEeeccC
Q 001951 249 RSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
......+..-+.|+.|.+..|-
T Consensus 232 --~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 232 --RYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred --HHHHHHhcccchhhhccccchh
Confidence 1122334444556666655543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.72 E-value=0.29 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=12.3
Q ss_pred cccCcEEEccCCCCCCCChh
Q 001951 177 LKKLEILSLVDSNIEQLPEE 196 (992)
Q Consensus 177 L~~L~~L~L~~~~l~~LP~~ 196 (992)
|.+|++|++++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.72 E-value=0.29 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=12.3
Q ss_pred cccCcEEEccCCCCCCCChh
Q 001951 177 LKKLEILSLVDSNIEQLPEE 196 (992)
Q Consensus 177 L~~L~~L~L~~~~l~~LP~~ 196 (992)
|.+|++|++++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.65 E-value=0.74 Score=28.25 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=17.9
Q ss_pred CCCcCEEeecCCCCCCccCcccc
Q 001951 200 LTQLRLFDLSGCSKLKVIPPNLL 222 (992)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i 222 (992)
|++|++|++++|. ++.+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5688999999987 888887743
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.65 E-value=0.74 Score=28.25 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=17.9
Q ss_pred CCCcCEEeecCCCCCCccCcccc
Q 001951 200 LTQLRLFDLSGCSKLKVIPPNLL 222 (992)
Q Consensus 200 L~~L~~L~l~~~~~l~~~p~~~i 222 (992)
|++|++|++++|. ++.+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5688999999987 888887743
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.46 E-value=1 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.465 Sum_probs=11.3
Q ss_pred CCcCEEEEcCCCCCccc
Q 001951 819 KNLTTLELWYCQRLMNL 835 (992)
Q Consensus 819 ~~L~~L~i~~C~~L~~l 835 (992)
++|++|++++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 56677777777766654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.76 E-value=1.3 Score=27.26 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.5
Q ss_pred CCCccEEEEccccccc
Q 001951 901 FPSLEDLFVIECPKMK 916 (992)
Q Consensus 901 ~~sL~~L~i~~C~~l~ 916 (992)
+|.|++|++++|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888888765
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.53 E-value=3.3 Score=25.38 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.1
Q ss_pred cCcEEEccCCCCCCCCh
Q 001951 179 KLEILSLVDSNIEQLPE 195 (992)
Q Consensus 179 ~L~~L~L~~~~l~~LP~ 195 (992)
+|++|++++|.+++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777774
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.55 E-value=5.5 Score=24.50 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.1
Q ss_pred CCcEEEccCCCC
Q 001951 157 NLQTLCLDRCAL 168 (992)
Q Consensus 157 ~Lr~L~L~~~~l 168 (992)
+|++|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444443
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=57.93 E-value=0.12 Score=58.68 Aligned_cols=177 Identities=20% Similarity=0.160 Sum_probs=84.0
Q ss_pred CCEEEeecCCCcccC-----CCC-CCCCccEEEcCCCCCCCCcC---hhhhcCC-CCCcEEEeeCCcCc-----cCCccc
Q 001951 88 CPTIFLHDCKHWEVP-----EGL-EYPQLEFFCMSPRDHSIKIP---NHVFAGM-SNLRGLALSNMQFL-----SLPSLF 152 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~-----~~~-~~~~Lr~L~l~~~~~~~~~~---~~~~~~l-~~Lr~L~Ls~~~i~-----~lp~~i 152 (992)
++++.+.+|.+..-. ..+ ....|..|++.+|.+...-- ...+... ..+++|++..|.+. .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566666666554221 111 34566666666665542100 0112222 34555666655544 234455
Q ss_pred CCCCCCcEEEccCCCCCC-----c-ccc----cCcccCcEEEccCCCCCC-----CChhhhCCCC-cCEEeecCCCCCCc
Q 001951 153 HLPLNLQTLCLDRCALGD-----I-AII----GNLKKLEILSLVDSNIEQ-----LPEEMAQLTQ-LRLFDLSGCSKLKV 216 (992)
Q Consensus 153 ~~l~~Lr~L~L~~~~l~~-----l-~~i----~~L~~L~~L~L~~~~l~~-----LP~~i~~L~~-L~~L~l~~~~~l~~ 216 (992)
....+++.++++.|.+.. + ..+ ....++++|++.+|.+.. +-..+..... ++.|++..|. +..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 556666666666666431 1 222 235666666666665541 1122333444 4556666554 332
Q ss_pred c-----CccccCCC-CCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 217 I-----PPNLLSGL-SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 217 ~-----p~~~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
. .+. +..+ ..++++++..|.+.-.+ .......+....+++.+.++.|.+
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~-------~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEKG-------VRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCccccc-------hHHHHHHHhhhHHHHHhhcccCcc
Confidence 1 111 3333 45566666666655111 122233444555566666665543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.72 E-value=12 Score=22.22 Aligned_cols=11 Identities=45% Similarity=0.474 Sum_probs=4.0
Q ss_pred CCcEEEccCCC
Q 001951 157 NLQTLCLDRCA 167 (992)
Q Consensus 157 ~Lr~L~L~~~~ 167 (992)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.35 E-value=21 Score=22.35 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=7.3
Q ss_pred CCcEEEccCCCCC
Q 001951 157 NLQTLCLDRCALG 169 (992)
Q Consensus 157 ~Lr~L~L~~~~l~ 169 (992)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666655543
No 90
>PF14162 YozD: YozD-like protein
Probab=20.90 E-value=67 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhCCccc
Q 001951 20 QETRDRLYALVHKLKDYCLLL 40 (992)
Q Consensus 20 e~~~~~~~~~~~~L~~~~l~~ 40 (992)
|++|+.+ +.+|+.|+++-
T Consensus 11 EEIAefF---y~eL~kRGyvP 28 (57)
T PF14162_consen 11 EEIAEFF---YHELVKRGYVP 28 (57)
T ss_pred HHHHHHH---HHHHHHccCCC
Confidence 5566665 66677777664
Done!