Query 001951
Match_columns 992
No_of_seqs 782 out of 5426
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-41 7.4E-46 413.9 30.9 680 109-945 51-761 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-38 4.6E-43 389.2 34.9 674 86-891 50-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-37 2E-41 372.1 42.2 176 89-278 7-188 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-36 3.3E-40 361.3 40.9 537 72-752 12-574 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.3E-35 2.5E-39 348.7 35.4 190 89-290 14-211 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.5E-34 1.5E-38 341.8 38.8 178 89-280 15-198 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-33 7E-38 336.1 36.1 188 71-273 18-216 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-33 7.5E-38 335.8 34.2 150 111-276 15-168 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-31 2.2E-35 324.8 38.1 523 72-726 12-559 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-31 9.8E-36 327.9 34.0 171 89-274 7-187 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 4.8E-31 1.7E-35 313.4 32.0 174 91-279 12-195 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-30 4.2E-35 310.0 31.5 185 73-272 16-211 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-30 1.1E-34 304.5 30.9 484 95-654 14-510 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.7E-29 1.6E-33 294.6 34.6 169 107-291 4-180 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-28 8.9E-33 294.4 33.0 177 92-280 37-220 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-29 2.9E-33 290.0 27.7 143 89-238 3-150 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-27 1.6E-31 283.3 32.4 523 73-700 40-579 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 7.1E-28 2.4E-32 291.0 25.0 163 406-627 672-839 (876)
19 4eco_A Uncharacterized protein 100.0 5.9E-28 2E-32 287.9 23.5 34 86-119 81-116 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-27 1.3E-31 276.1 26.7 59 795-856 421-479 (520)
21 4eco_A Uncharacterized protein 99.9 4.7E-27 1.6E-31 280.2 24.5 37 108-145 81-117 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.8E-27 3.4E-31 274.7 25.6 144 88-238 33-181 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-26 9E-31 271.0 28.2 149 106-273 29-181 (562)
24 4ecn_A Leucine-rich repeat pro 99.9 2.3E-26 7.8E-31 277.8 25.4 72 188-272 435-526 (876)
25 1o6v_A Internalin A; bacterial 99.9 7E-25 2.4E-29 252.2 29.9 346 108-600 46-391 (466)
26 1o6v_A Internalin A; bacterial 99.9 8.2E-25 2.8E-29 251.6 30.4 346 85-573 45-390 (466)
27 1jl5_A Outer protein YOPM; leu 99.9 2.9E-25 9.9E-30 252.6 21.7 352 104-599 7-372 (454)
28 3v47_A TOLL-like receptor 5B a 99.9 1.8E-24 6.1E-29 248.9 26.6 133 406-594 274-406 (455)
29 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-24 2.1E-28 241.8 28.0 164 85-274 41-204 (457)
30 4fmz_A Internalin; leucine ric 99.9 7.1E-24 2.4E-28 234.3 24.8 169 85-273 43-211 (347)
31 3v47_A TOLL-like receptor 5B a 99.9 3.7E-24 1.3E-28 246.2 22.8 146 90-239 14-167 (455)
32 1jl5_A Outer protein YOPM; leu 99.9 6.2E-24 2.1E-28 241.6 21.3 180 85-291 10-203 (454)
33 4fmz_A Internalin; leucine ric 99.9 2.8E-23 9.4E-28 229.5 25.2 303 106-480 42-344 (347)
34 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-23 1.6E-27 234.6 27.0 147 106-277 40-186 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 3.9E-23 1.3E-27 232.0 24.4 155 104-274 41-199 (390)
36 3o6n_A APL1; leucine-rich repe 99.9 8E-23 2.7E-27 229.5 25.2 301 85-480 44-350 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 2.3E-22 7.9E-27 232.5 27.2 176 89-278 14-193 (477)
38 3oja_B Anopheles plasmodium-re 99.9 3.7E-22 1.3E-26 236.7 24.6 155 104-274 47-205 (597)
39 3oja_B Anopheles plasmodium-re 99.9 4.5E-22 1.5E-26 235.9 25.0 301 85-480 50-356 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 2.2E-21 7.4E-26 224.3 26.9 305 72-444 19-331 (477)
41 4fcg_A Uncharacterized protein 99.8 8.3E-21 2.8E-25 206.5 17.3 174 85-273 80-265 (328)
42 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-20 5.7E-25 205.4 19.5 155 109-280 34-191 (332)
43 4fcg_A Uncharacterized protein 99.8 2E-20 7E-25 203.4 19.9 132 131-275 79-220 (328)
44 1xku_A Decorin; proteoglycan, 99.8 9.4E-20 3.2E-24 199.3 23.1 154 109-278 32-188 (330)
45 1xku_A Decorin; proteoglycan, 99.8 2.1E-19 7.3E-24 196.5 25.1 148 87-239 32-184 (330)
46 1ogq_A PGIP-2, polygalacturona 99.8 7.3E-21 2.5E-25 205.8 11.5 244 86-393 50-304 (313)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.6E-24 196.9 21.4 288 87-444 34-331 (332)
48 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 7.8E-24 198.2 19.4 191 91-294 36-233 (353)
49 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-20 1.6E-24 199.5 12.4 249 108-423 50-307 (313)
50 3ogk_B Coronatine-insensitive 99.8 6.1E-21 2.1E-25 227.4 5.8 128 130-270 109-252 (592)
51 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-19 1.5E-23 189.6 19.5 183 83-278 29-218 (285)
52 3zyj_A Leucine-rich repeat-con 99.8 4.9E-19 1.7E-23 201.8 18.8 175 88-277 45-223 (440)
53 3ogk_B Coronatine-insensitive 99.8 4.6E-20 1.6E-24 219.8 9.9 335 529-912 190-548 (592)
54 3zyi_A Leucine-rich repeat-con 99.8 6.4E-19 2.2E-23 201.6 18.6 175 88-277 56-234 (452)
55 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.6E-24 194.1 13.9 173 90-275 11-189 (306)
56 2z80_A TOLL-like receptor 2, v 99.8 1.3E-18 4.5E-23 192.1 20.0 170 106-291 29-206 (353)
57 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-18 9.3E-23 183.4 20.4 174 89-276 14-192 (285)
58 2p1m_B Transport inhibitor res 99.8 4.3E-20 1.5E-24 220.2 6.7 63 529-594 182-246 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-17 5.2E-22 194.5 26.9 255 87-444 41-295 (622)
60 2p1m_B Transport inhibitor res 99.8 4.6E-20 1.6E-24 220.0 3.9 82 130-211 102-194 (594)
61 3zyi_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 193.4 20.4 231 74-362 64-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 5.6E-18 1.9E-22 193.0 19.8 232 73-362 52-290 (440)
63 2o6q_A Variable lymphocyte rec 99.8 2E-17 6.7E-22 174.9 21.1 193 87-293 17-215 (270)
64 1z7x_W Ribonuclease inhibitor; 99.8 3.4E-20 1.2E-24 213.6 -0.7 158 108-273 3-182 (461)
65 1p9a_G Platelet glycoprotein I 99.8 1.5E-17 5.1E-22 177.2 19.4 194 85-293 9-205 (290)
66 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 4E-24 197.0 2.5 243 106-394 32-276 (317)
67 2o6q_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 170.1 22.1 189 72-274 24-218 (270)
68 2z66_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 176.9 19.1 209 72-295 15-235 (306)
69 1h6u_A Internalin H; cell adhe 99.7 5.1E-17 1.8E-21 174.9 19.5 190 85-295 40-229 (308)
70 2xwt_C Thyrotropin receptor; s 99.7 3E-17 1E-21 170.1 16.2 199 76-290 23-233 (239)
71 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-19 8.1E-24 206.5 -0.3 180 86-273 28-239 (461)
72 1p9a_G Platelet glycoprotein I 99.7 6.8E-17 2.3E-21 172.1 18.4 159 106-280 8-167 (290)
73 2z62_A TOLL-like receptor 4, v 99.7 6.4E-17 2.2E-21 171.8 17.0 173 95-279 16-195 (276)
74 3o53_A Protein LRIM1, AGAP0063 99.7 1.4E-18 4.9E-23 188.3 4.3 263 110-447 12-276 (317)
75 2z62_A TOLL-like receptor 4, v 99.7 7E-17 2.4E-21 171.5 17.1 198 83-294 25-235 (276)
76 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.4E-21 165.9 19.0 174 87-274 15-192 (251)
77 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-15 4.8E-20 177.9 26.2 250 70-391 46-295 (622)
78 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 187.5 11.8 153 107-278 33-186 (487)
79 1wwl_A Monocyte differentiatio 99.7 3.7E-17 1.2E-21 176.8 10.7 180 87-277 44-244 (312)
80 1wwl_A Monocyte differentiatio 99.7 2.1E-17 7.3E-22 178.6 8.4 154 106-274 41-214 (312)
81 3rfs_A Internalin B, repeat mo 99.7 7.6E-16 2.6E-20 162.8 19.8 176 84-274 39-218 (272)
82 1h6u_A Internalin H; cell adhe 99.7 4.6E-16 1.6E-20 167.4 18.5 186 72-278 49-234 (308)
83 1h6t_A Internalin B; cell adhe 99.7 3.9E-16 1.3E-20 166.4 17.4 172 85-277 45-216 (291)
84 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.8E-21 165.1 12.5 209 93-362 18-237 (239)
85 3rfs_A Internalin B, repeat mo 99.7 8.2E-16 2.8E-20 162.5 16.2 173 105-293 38-215 (272)
86 3oja_A Leucine-rich immune mol 99.7 3.7E-17 1.3E-21 187.7 5.2 234 86-390 34-272 (487)
87 3m19_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 155.2 19.1 166 71-239 21-192 (251)
88 4ay9_X Follicle-stimulating ho 99.6 4.9E-15 1.7E-19 162.8 18.8 195 71-279 16-220 (350)
89 1h6t_A Internalin B; cell adhe 99.6 2E-15 6.7E-20 161.0 14.6 169 106-295 44-212 (291)
90 3e6j_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 151.7 16.9 149 88-239 21-172 (229)
91 4glp_A Monocyte differentiatio 99.6 3.3E-16 1.1E-20 169.2 7.1 161 106-276 62-239 (310)
92 1m9s_A Internalin B; cell inva 99.6 3E-15 1E-19 175.0 15.6 174 84-278 41-214 (605)
93 2v9t_B SLIT homolog 2 protein 99.6 5.7E-15 1.9E-19 150.2 15.3 148 89-239 14-165 (220)
94 2o6s_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 149.2 14.3 169 89-278 10-183 (208)
95 2v70_A SLIT-2, SLIT homolog 2 99.6 8E-15 2.7E-19 149.1 15.0 149 89-239 14-166 (220)
96 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.9E-20 166.7 9.1 199 110-362 49-258 (336)
97 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.6E-19 159.3 16.5 120 111-235 12-137 (350)
98 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.6E-19 144.8 14.4 148 85-239 43-194 (197)
99 4glp_A Monocyte differentiatio 99.6 8.4E-15 2.9E-19 158.1 13.7 192 86-293 91-304 (310)
100 1xeu_A Internalin C; cellular 99.6 6.2E-15 2.1E-19 154.4 12.1 167 88-276 21-187 (263)
101 4ezg_A Putative uncharacterize 99.6 9.1E-15 3.1E-19 146.1 11.8 150 106-274 42-194 (197)
102 2xot_A Amphoterin-induced prot 99.5 2E-14 6.9E-19 158.6 14.0 171 89-273 21-201 (361)
103 2v9t_B SLIT homolog 2 protein 99.5 5.7E-14 2E-18 142.7 15.5 147 111-273 14-164 (220)
104 1m9s_A Internalin B; cell inva 99.5 1.7E-14 5.7E-19 168.7 12.0 177 97-294 32-208 (605)
105 3cvr_A Invasion plasmid antige 99.5 1.2E-13 4E-18 159.5 18.4 174 87-294 60-241 (571)
106 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6E-20 169.2 2.6 160 106-273 30-228 (386)
107 1xeu_A Internalin C; cellular 99.5 8.9E-14 3E-18 145.6 15.4 147 84-239 39-185 (263)
108 2o6s_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 141.1 14.1 155 75-239 18-178 (208)
109 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 3.9E-18 141.5 15.9 148 110-274 21-172 (229)
110 2ell_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 136.0 12.3 137 131-279 22-165 (168)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.2E-18 140.2 14.6 147 111-273 14-165 (220)
112 2ast_B S-phase kinase-associat 99.5 4.2E-15 1.4E-19 162.9 3.6 219 87-361 48-282 (336)
113 2xot_A Amphoterin-induced prot 99.5 6.6E-14 2.2E-18 154.4 12.8 166 71-239 25-202 (361)
114 3cvr_A Invasion plasmid antige 99.5 7E-13 2.4E-17 153.0 18.8 172 71-275 66-244 (571)
115 3goz_A Leucine-rich repeat-con 99.4 9.8E-15 3.4E-19 161.3 0.9 157 108-274 22-209 (362)
116 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.5E-18 129.6 9.1 125 132-269 16-148 (149)
117 2ca6_A RAN GTPase-activating p 99.4 1.1E-14 3.9E-19 162.6 0.7 125 140-273 16-171 (386)
118 1dce_A Protein (RAB geranylger 99.4 1.5E-15 5.1E-20 176.5 -8.2 190 85-289 348-566 (567)
119 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.9E-18 150.8 8.8 155 113-276 3-182 (362)
120 2ell_A Acidic leucine-rich nuc 99.4 5.1E-13 1.7E-17 129.6 10.3 128 108-238 24-159 (168)
121 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.6E-17 129.3 13.4 124 111-239 13-139 (193)
122 2je0_A Acidic leucine-rich nuc 99.4 2.8E-13 9.5E-18 128.5 6.9 124 108-234 17-148 (149)
123 4b8c_D Glucose-repressible alc 99.4 6.1E-13 2.1E-17 159.8 11.1 150 86-239 173-329 (727)
124 1w8a_A SLIT protein; signaling 99.4 2.4E-12 8.2E-17 127.6 12.8 123 136-272 11-137 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.4 7.2E-13 2.5E-17 129.5 8.8 135 129-273 15-152 (176)
126 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.4E-17 127.5 12.0 124 111-239 11-139 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.3 4.9E-13 1.7E-17 130.7 4.8 132 104-239 15-153 (176)
128 2wfh_A SLIT homolog 2 protein 99.3 9.4E-12 3.2E-16 123.2 14.1 124 136-273 13-138 (193)
129 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 118.6 14.3 106 133-239 28-137 (177)
130 2o6r_A Variable lymphocyte rec 99.3 2.7E-11 9.2E-16 118.5 14.2 123 88-212 9-135 (177)
131 1dce_A Protein (RAB geranylger 99.3 1.6E-11 5.4E-16 142.7 12.3 123 134-268 442-567 (567)
132 1ds9_A Outer arm dynein; leuci 99.2 1.2E-13 4.2E-18 137.9 -7.0 136 128-267 43-180 (198)
133 4b8c_D Glucose-repressible alc 99.2 1.7E-11 5.8E-16 147.2 9.2 152 107-274 172-329 (727)
134 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 113.3 12.0 101 136-239 15-118 (174)
135 3g39_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 112.6 11.8 102 135-239 11-115 (170)
136 1ds9_A Outer arm dynein; leuci 99.1 5.9E-13 2E-17 132.9 -7.2 147 87-239 24-185 (198)
137 2r9u_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 108.8 11.3 104 111-219 15-122 (174)
138 3sb4_A Hypothetical leucine ri 99.1 6.4E-10 2.2E-14 120.8 13.4 188 85-288 48-326 (329)
139 3g39_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 106.1 11.1 98 111-212 12-113 (170)
140 3sb4_A Hypothetical leucine ri 98.9 2.3E-09 7.8E-14 116.4 8.9 192 85-291 24-305 (329)
141 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.3E-13 110.8 10.5 100 137-239 12-116 (347)
142 3un9_A NLR family member X1; l 98.7 1.2E-09 4.2E-14 119.8 -1.9 132 133-273 101-251 (372)
143 2ifg_A High affinity nerve gro 98.7 5.6E-08 1.9E-12 106.4 10.3 97 113-212 13-114 (347)
144 3un9_A NLR family member X1; l 98.6 1E-09 3.5E-14 120.4 -4.9 155 84-239 70-252 (372)
145 4fdw_A Leucine rich hypothetic 98.6 8.7E-07 3E-11 98.0 17.8 231 86-362 113-356 (401)
146 4fdw_A Leucine rich hypothetic 98.5 2.3E-06 7.7E-11 94.7 17.3 186 87-294 158-356 (401)
147 4fs7_A Uncharacterized protein 98.2 4.2E-05 1.4E-09 84.9 18.0 130 98-235 59-194 (394)
148 2a5y_B CED-4; apoptosis; HET: 98.1 3.9E-07 1.3E-11 105.8 0.9 60 4-67 407-473 (549)
149 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5.2E-11 82.1 4.6 18 817-834 83-100 (176)
150 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 82.3 4.0 69 791-860 81-154 (176)
151 2ra8_A Uncharacterized protein 98.1 1.9E-06 6.5E-11 93.4 5.5 178 86-273 107-319 (362)
152 4fs7_A Uncharacterized protein 98.0 3.9E-05 1.3E-09 85.1 14.8 131 123-271 61-195 (394)
153 1io0_A Tropomodulin; LRR prote 97.9 2.9E-06 9.9E-11 82.8 2.4 85 128-212 31-134 (185)
154 1io0_A Tropomodulin; LRR prote 97.8 8.7E-06 3E-10 79.3 2.9 117 149-274 29-164 (185)
155 2ra8_A Uncharacterized protein 97.8 2.2E-05 7.7E-10 85.0 6.4 149 85-239 138-320 (362)
156 3rw6_A Nuclear RNA export fact 97.7 2.8E-05 9.5E-10 79.6 4.8 61 131-191 168-233 (267)
157 4gt6_A Cell surface protein; l 97.6 0.0062 2.1E-07 67.2 23.9 147 106-271 61-215 (394)
158 4gt6_A Cell surface protein; l 97.5 0.01 3.5E-07 65.4 22.5 110 123-236 53-170 (394)
159 3rw6_A Nuclear RNA export fact 97.3 0.00014 4.8E-09 74.3 4.8 59 177-238 169-232 (267)
160 4h09_A Hypothetical leucine ri 95.2 0.05 1.7E-06 59.4 9.8 145 107-269 193-341 (379)
161 4h09_A Hypothetical leucine ri 95.0 0.11 3.9E-06 56.6 11.6 125 106-236 215-343 (379)
162 3rfe_A Platelet glycoprotein I 94.9 0.03 1E-06 50.1 5.6 56 181-239 11-68 (130)
163 3rfe_A Platelet glycoprotein I 94.5 0.058 2E-06 48.2 6.2 31 137-169 12-44 (130)
164 1vt4_I APAF-1 related killer D 93.1 0.032 1.1E-06 66.9 2.4 46 3-59 392-437 (1221)
165 1pgv_A TMD-1, tropomodulin TMD 92.9 0.064 2.2E-06 51.5 3.7 63 129-191 37-111 (197)
166 1pgv_A TMD-1, tropomodulin TMD 92.2 0.094 3.2E-06 50.3 3.9 58 155-212 40-109 (197)
167 3sfz_A APAF-1, apoptotic pepti 91.4 0.087 3E-06 67.9 3.5 38 29-66 414-453 (1249)
168 1z6t_A APAF-1, apoptotic prote 77.5 1.1 3.9E-05 51.9 3.3 37 27-63 412-450 (591)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-41 Score=413.87 Aligned_cols=680 Identities=14% Similarity=0.050 Sum_probs=348.2
Q ss_pred CccEEEcCCCCCCCC---cChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCC--cc--cccCcccCc
Q 001951 109 QLEFFCMSPRDHSIK---IPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IA--IIGNLKKLE 181 (992)
Q Consensus 109 ~Lr~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l~--~i~~L~~L~ 181 (992)
+++.|+++++.+.+. +++. |.++++|++++++.+.+..+|+.|+.+++||+|+|++|.+.. +. .++++++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred cEEEEECCCCCcCCccCccChh-HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 455566665555443 4433 456667777777766666666667777777777777766542 23 566677777
Q ss_pred EEEccCCCCC-CCChhh-hCCCCcCEEeecCCCCCCccCccc---cCCCCCCCEEEeecCcccccccccccCCCCCChhh
Q 001951 182 ILSLVDSNIE-QLPEEM-AQLTQLRLFDLSGCSKLKVIPPNL---LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 256 (992)
Q Consensus 182 ~L~L~~~~l~-~LP~~i-~~L~~L~~L~l~~~~~l~~~p~~~---i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (992)
+||+++|.+. ..|..+ .++++|++|++++|. +...+... ++++++|++|++++|.+. + ...
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~--~~~ 195 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS-----------G--DVD 195 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE-----------S--CCB
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc-----------c--cCC
Confidence 7777776554 344443 666777777777666 54444332 466667777777666654 0 112
Q ss_pred hcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccC
Q 001951 257 LKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVP 336 (992)
Q Consensus 257 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~ 336 (992)
+.++++|++|++++|.+......+ ..+++|++|+++++.
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l-----------------------------------------~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFL-----------------------------------------GDCSALQHLDISGNK 234 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBC-----------------------------------------TTCCSCCEEECCSSC
T ss_pred cccCCcCCEEECcCCcCCCCCccc-----------------------------------------ccCCCCCEEECcCCc
Confidence 256666777777666654322212 112334444443322
Q ss_pred CcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEec
Q 001951 337 GIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRN 416 (992)
Q Consensus 337 ~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 416 (992)
+....+. .++.+++|++|++++|.....+ + ...+++|++|++.++.-...+.. .....+++|++|++.+
T Consensus 235 -l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~------~-~~~l~~L~~L~L~~n~l~~~ip~--~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 235 -LSGDFSR-AISTCTELKLLNISSNQFVGPI------P-PLPLKSLQYLSLAENKFTGEIPD--FLSGACDTLTGLDLSG 303 (768)
T ss_dssp -CCSCHHH-HTTTCSSCCEEECCSSCCEESC------C-CCCCTTCCEEECCSSEEEESCCC--CSCTTCTTCSEEECCS
T ss_pred -CCCcccH-HHhcCCCCCEEECCCCcccCcc------C-ccccCCCCEEECcCCccCCccCH--HHHhhcCcCCEEECcC
Confidence 1111111 1144455555555554322111 0 11344555555554321111100 0011235666666665
Q ss_pred CCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccccccccchhhhh
Q 001951 417 CDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQ 496 (992)
Q Consensus 417 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 496 (992)
|. ++...+ ..++.+++|++|++++|.-...++.. ....+++|++|+++++.-...++. .+..+
T Consensus 304 n~-l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~-----------~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l 366 (768)
T 3rgz_A 304 NH-FYGAVP-PFFGSCSLLESLALSSNNFSGELPMD-----------TLLKMRGLKVLDLSFNEFSGELPE----SLTNL 366 (768)
T ss_dssp SE-EEECCC-GGGGGCTTCCEEECCSSEEEEECCHH-----------HHTTCTTCCEEECCSSEEEECCCT----THHHH
T ss_pred Cc-CCCccc-hHHhcCCCccEEECCCCcccCcCCHH-----------HHhcCCCCCEEeCcCCccCccccH----HHHhh
Confidence 43 332222 23556666666666665322222210 123455666666666532222222 13333
Q ss_pred c-ccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEecCCCccccCc
Q 001951 497 T-RLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFP 575 (992)
Q Consensus 497 ~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p 575 (992)
+ +|+.|+++++..... .+.......+++|++|++++|.++...+..+. .+++|+.|++++| .++...|
T Consensus 367 ~~~L~~L~Ls~N~l~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N-~l~~~~p 435 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGP--------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFN-YLSGTIP 435 (768)
T ss_dssp TTTCSEEECCSSEEEEE--------CCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSS-EEESCCC
T ss_pred hcCCcEEEccCCCcCCC--------cChhhhhcccCCccEEECCCCccccccCHHHh--cCCCCCEEECcCC-cccCccc
Confidence 3 556666655531100 00000011256777777777776544433332 3677777777775 4554434
Q ss_pred hhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCcccCCCcccEEEEecCCcce
Q 001951 576 SSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVK 655 (992)
Q Consensus 576 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~ 655 (992)
. .+..+++|+.|++++|.-...++.... .+++|+.|++.++.-...+|.... .+++|+.|++++|.--.
T Consensus 436 ~-~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 436 S-SLGSLSKLRDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTG 504 (768)
T ss_dssp G-GGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCS
T ss_pred H-HHhcCCCCCEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCC
Confidence 3 356677777777777763323333221 456777777776654444443322 46677777777764333
Q ss_pred eeccccccccccccCcccccccccceeeeeecCCceEEeecCccccccccccCCccccccccEEEeecCCCC-cccHHHH
Q 001951 656 IFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFL 734 (992)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~~-~~~~~~l 734 (992)
.+|... ..+++|++|++++|......+.. ...+++|+.|++.+|... .+|....
T Consensus 505 ~~p~~~-----------------------~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 505 EIPKWI-----------------------GRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCCGGG-----------------------GGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred cCChHH-----------------------hcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECCCCccCCcCChHHh
Confidence 444221 34566667777666665332211 234556666666666544 4444332
Q ss_pred hhCCCCcEEEEE-cceeEEEccCh----------------hhhhhhhhccccceEecCCccccccccccCCCcccccccc
Q 001951 735 ERFHNLEKLELR-WSSYKEIFSNE----------------EIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENL 797 (992)
Q Consensus 735 ~~l~~L~~L~i~-c~~l~~~~~~~----------------~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L 797 (992)
. ...+..+.+. +..+..+.... ..+..+..++.++.+++... .+.......+..+++|
T Consensus 560 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 560 K-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR----VYGGHTSPTFDNNGSM 634 (768)
T ss_dssp T-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC----EEEEECCCSCSSSBCC
T ss_pred c-ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc----eecccCchhhhccccc
Confidence 2 2222221111 11111110000 00001111222222222211 0001111234667889
Q ss_pred cEEEEeccCCcccccCCccccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCcchhhhhccCcccccccccccc
Q 001951 798 ESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSK 877 (992)
Q Consensus 798 ~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 877 (992)
++|+++++.-...+|..++.+++|+.|+++++.--..+| .....+++|+.|+++++.--..++..- ..+++
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip~~l-------~~l~~ 705 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIPQAM-------SALTM 705 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCCGGG-------GGCCC
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCChHH-------hCCCC
Confidence 999999988777888888999999999999875333553 456788999999999886433333221 25788
Q ss_pred ccccccccCCccccccCCCccccCCCccEEEEccccccccCCCCcccCCccceEEeccCCccccccCc
Q 001951 878 LKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLYKGCWEGD 945 (992)
Q Consensus 878 L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~p~L~~~~~~~~~~~~~~~~~ 945 (992)
|++|++++++--..+|.++. +.++....+.++|.+--.| |. .|....+++|+++.|
T Consensus 706 L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~--------l~-~C~~~~~~~~~~~~~ 761 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP--------LP-RCDPSNADGYAHHQR 761 (768)
T ss_dssp CSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT--------SC-CCCSCC---------
T ss_pred CCEEECcCCcccccCCCchh---hccCCHHHhcCCchhcCCC--------Cc-CCCCCccCCCCCCCC
Confidence 99999999876667777653 5556666677888766433 22 466788999999955
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-38 Score=389.21 Aligned_cols=674 Identities=16% Similarity=0.062 Sum_probs=407.2
Q ss_pred CCCCEEEeecCCCcc----cCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-cCCc--ccCCCCC
Q 001951 86 KNCPTIFLHDCKHWE----VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPS--LFHLPLN 157 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~--~i~~l~~ 157 (992)
.+++.|+++++.+.. +++.+ .++.|+.++++.+... .++.. |.++++||+|+|++|.+. .+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 456777777665542 44333 5667777777666543 23332 567777777777777766 4565 6777777
Q ss_pred CcEEEccCCCCCCc--cc-ccCcccCcEEEccCCCCCCC-Chh---hhCCCCcCEEeecCCCCCCccCccccCCCCCCCE
Q 001951 158 LQTLCLDRCALGDI--AI-IGNLKKLEILSLVDSNIEQL-PEE---MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (992)
Q Consensus 158 Lr~L~L~~~~l~~l--~~-i~~L~~L~~L~L~~~~l~~L-P~~---i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 230 (992)
||+|++++|.+... .. ++++++|++||+++|.+... |.. ++++++|++|++++|. +....+ ++.+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCCE
Confidence 77777777765422 22 36777777777777777644 333 5677777777777776 443333 467777777
Q ss_pred EEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCc-cCCCcc-ccCCccEEEEEeCCccCccCCcCcceEE
Q 001951 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPKGL-FSKKLERYKIFIGDEWDWSGNYKNKRVL 308 (992)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~l~~l 308 (992)
|++++|.+. .. +..++++++|++|++++|.+. .++..+ .+++|+.+++..+........
T Consensus 205 L~Ls~n~l~-----------~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------- 265 (768)
T 3rgz_A 205 LDVSSNNFS-----------TG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------- 265 (768)
T ss_dssp EECCSSCCC-----------SC-CCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-------
T ss_pred EECcCCcCC-----------CC-CcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-------
Confidence 777777654 11 222677777777777777654 233333 556667666654432111100
Q ss_pred EeecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeecc
Q 001951 309 KLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLH 388 (992)
Q Consensus 309 ~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~ 388 (992)
. .+++|++|++.++. +...+|......+++|++|++++|.....++ ..+..+++|++|++.
T Consensus 266 -----------~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 266 -----------L--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-----PFFGSCSLLESLALS 326 (768)
T ss_dssp -----------C--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCC-----GGGGGCTTCCEEECC
T ss_pred -----------c--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccc-----hHHhcCCCccEEECC
Confidence 0 25678888887743 3333343322335888899888875322211 345677888888888
Q ss_pred ccccccceecCCCCchhcCCccEEEEecCCCCc-cccchhhhcccC-cccEEEeccccCchhhhcccccCCccCCCccce
Q 001951 389 NLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-NIFSFSFVRGLP-QLQTLNVINCKNMKEIFTVGRENDVDCHEVDKI 466 (992)
Q Consensus 389 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~-~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~ 466 (992)
++.-...+.. ...+.+++|++|++.+|. ++ .+|. .+..++ +|++|+++++.-...+++.. ...
T Consensus 327 ~n~l~~~ip~--~~l~~l~~L~~L~Ls~n~-l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~----------~~~ 391 (768)
T 3rgz_A 327 SNNFSGELPM--DTLLKMRGLKVLDLSFNE-FSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNL----------CQN 391 (768)
T ss_dssp SSEEEEECCH--HHHTTCTTCCEEECCSSE-EEECCCT--THHHHTTTCSEEECCSSEEEEECCTTT----------TCS
T ss_pred CCcccCcCCH--HHHhcCCCCCEEeCcCCc-cCccccH--HHHhhhcCCcEEEccCCCcCCCcChhh----------hhc
Confidence 8542212210 013467889999998864 43 3432 355666 89999998865333333110 011
Q ss_pred ecCcccEEeecCCCccccccccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccc
Q 001951 467 EFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKI 546 (992)
Q Consensus 467 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 546 (992)
.+++|++|++.++.-...++. .+..+++|+.|++++|..... .......+++|+.|++++|.+...
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~----------~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPP----TLSNCSELVSLHLSFNYLSGT----------IPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCG----GGGGCTTCCEEECCSSEEESC----------CCGGGGGCTTCCEEECCSSCCCSC
T ss_pred ccCCccEEECCCCccccccCH----HHhcCCCCCEEECcCCcccCc----------ccHHHhcCCCCCEEECCCCcccCc
Confidence 267899999988754333333 366778888888888742210 112334578888999988886655
Q ss_pred cccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCC
Q 001951 547 WCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 626 (992)
Q Consensus 547 ~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~ 626 (992)
.+..+. .+++|+.|++++| .++...|. .+..+++|++|++++|.-...++.... .+++|+.|++++|.
T Consensus 458 ~p~~~~--~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~--------~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 458 IPQELM--YVKTLETLILDFN-DLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIG--------RLENLAILKLSNNS 525 (768)
T ss_dssp CCGGGG--GCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSC
T ss_pred CCHHHc--CCCCceEEEecCC-cccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHh--------cCCCCCEEECCCCc
Confidence 444433 3788999999886 45544353 467888999999988883334443322 57888888888887
Q ss_pred ccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeeecCCceEEeecCccccccccc
Q 001951 627 ELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQS 706 (992)
Q Consensus 627 ~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 706 (992)
-...+|.... .+++|+.|++++|+--..+|...+........ ......+..++.+.......
T Consensus 526 l~~~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-- 587 (768)
T 3rgz_A 526 FSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA--------------NFIAGKRYVYIKNDGMKKEC-- 587 (768)
T ss_dssp CEEECCGGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCC--------------STTCSCEEEEEECCSCCTTC--
T ss_pred ccCcCCHHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhh--------------hccccccccccccccccccc--
Confidence 6656665443 57888888888886555666443221110000 00001111111111110000
Q ss_pred cCCccccccccEEEeecCCCCcccHHHHhhCCCCcEEEEEcceeEEEccChhhhhhhhhccccceEecCCcccccccccc
Q 001951 707 QFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQ 786 (992)
Q Consensus 707 ~~~~~~~~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 786 (992)
...-..+.+.+ .....+..++.+..+++..+.+....+. .++.+++|+.|+++++.--..+|.
T Consensus 588 ------~~~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~~~~~g~~~~-----~~~~l~~L~~LdLs~N~l~g~ip~- 650 (768)
T 3rgz_A 588 ------HGAGNLLEFQG-----IRSEQLNRLSTRNPCNITSRVYGGHTSP-----TFDNNGSMMFLDMSYNMLSGYIPK- 650 (768)
T ss_dssp ------CSSEEEEECTT-----CCGGGGGGGGGTCCSCTTSCEEEEECCC-----SCSSSBCCCEEECCSSCCBSCCCG-
T ss_pred ------ccccccccccc-----ccchhhhccccccccccccceecccCch-----hhhccccccEEECcCCcccccCCH-
Confidence 00000111111 1112233344444444444555554443 456688999999998754445543
Q ss_pred CCCcccccccccEEEEeccCCcccccCCccccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCcchhhhhccCc
Q 001951 787 DSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEE 866 (992)
Q Consensus 787 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~ 866 (992)
.++.+++|+.|+++++.-...+|..++.+++|++|+++++.--..+| .....+++|++|++++|+--..++.. +
T Consensus 651 ---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~ls~N~l~g~iP~~-~ 724 (768)
T 3rgz_A 651 ---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP--QAMSALTMLTEIDLSNNNLSGPIPEM-G 724 (768)
T ss_dssp ---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC--GGGGGCCCCSEEECCSSEEEEECCSS-S
T ss_pred ---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECcCCcccccCCCc-h
Confidence 46889999999999998878899999999999999999975333553 45778899999999999754444432 2
Q ss_pred cccccccccccccccccccCCcccc
Q 001951 867 DVAEDEIVFSKLKWVSLERLENLTS 891 (992)
Q Consensus 867 ~~~~~~~~~~~L~~L~l~~c~~L~~ 891 (992)
.+.++....+.++|.|-.
T Consensus 725 -------~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 725 -------QFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp -------SGGGSCGGGGCSCTEEES
T ss_pred -------hhccCCHHHhcCCchhcC
Confidence 477788888888887754
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-37 Score=372.05 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=141.4
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
+.++.+++++.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |.+|+++++||+|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 456677777888887664 78999999998876 57777789999999999999998876 5678899999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+..+ ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +..++.+.++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc-----
Confidence 8876 35899999999999999998886 578999999999999997 66666555889999999999988765
Q ss_pred cccCCCCCChhhhc--CCCCCCEEEeeccCCccCCC
Q 001951 245 LNVGRSNASLQELK--LLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 245 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~ 278 (992)
......++ .+++|+.|++++|.+..++.
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ------ccCHHHhhccccccccEEECCCCcccccCh
Confidence 22334433 45789999998887655443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-36 Score=361.33 Aligned_cols=537 Identities=15% Similarity=0.165 Sum_probs=320.8
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp 149 (992)
.+.+...+|. ++..++++|++++|.+..++.. + .+++|++|++++|.+. .+++..|.++++||+|++++|.+..+|
T Consensus 12 s~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 12 SHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccC
Confidence 3344455553 4668999999999999888864 3 7899999999999887 565667899999999999999999998
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccC--
Q 001951 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS-- 223 (992)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~-- 223 (992)
. +|+++++|++|++++|.+..+ ..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence 7 699999999999999998876 5799999999999999998865 5678999999999999998 7777765333
Q ss_pred CCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcC
Q 001951 224 GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYK 303 (992)
Q Consensus 224 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 303 (992)
.+++|++|++++|.+. +..+..++.+.+|+.|++.++.......
T Consensus 169 ~~~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~------------------------- 212 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLT------------------------- 212 (680)
T ss_dssp TTCEESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHH-------------------------
T ss_pred ccccccEEECCCCccc-----------ccChhhhhhhhhhhhhhccccccChhhH-------------------------
Confidence 5689999999999776 3445678888889999887665321000
Q ss_pred cceEEEeecccCChHHHHHhhcccceeeccccCCcccccccccccccc--cccEEEeecCCCeeEEecCCCccccccccc
Q 001951 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFL--QLKHLHVQNNPFILFIVDSMAWVRYNAFLL 381 (992)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~--~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~ 381 (992)
..++. ....++|+.|++.++. .....+. .+..++ +|++|++++|.- ..++. ..+..+++
T Consensus 213 -----------~~~~~-~l~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~~~L~~L~Ls~n~l-~~~~~----~~~~~l~~ 273 (680)
T 1ziw_A 213 -----------EKLCL-ELANTSIRNLSLSNSQ-LSTTSNT-TFLGLKWTNLTMLDLSYNNL-NVVGN----DSFAWLPQ 273 (680)
T ss_dssp -----------HHHHH-HHTTSCCCEEECTTSC-CCEECTT-TTGGGGGSCCCEEECTTSCC-CEECT----TTTTTCTT
T ss_pred -----------HHHHH-HhhhccccEEEccCCc-ccccChh-HhhccCcCCCCEEECCCCCc-CccCc----ccccCccc
Confidence 00000 0112466666666532 2222221 113333 377777766642 21110 12334455
Q ss_pred cceeeccccccccceecCCCCchhcCCccEEEEecCCCCc-----cccc--hhhhcccCcccEEEeccccCchhhhcccc
Q 001951 382 LESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-----NIFS--FSFVRGLPQLQTLNVINCKNMKEIFTVGR 454 (992)
Q Consensus 382 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~l~~--~~~~~~l~~L~~L~l~~c~~l~~i~~~~~ 454 (992)
|++|++.++ .+..+. +.....+++|+.|++.++..-. .+|. ...+..+++|++|+++++. +..+.+.
T Consensus 274 L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~-- 347 (680)
T 1ziw_A 274 LEYFFLEYN-NIQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSN-- 347 (680)
T ss_dssp CCEEECCSC-CBSEEC--TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTT--
T ss_pred ccEeeCCCC-ccCccC--hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChh--
Confidence 555555553 222221 1112344555555554421100 1110 0123445555555555432 2222100
Q ss_pred cCCccCCCccceecCcccEEeecCCCc-cccccccccchhhhhcccccccccCCCceeecccccCccccccccccccccc
Q 001951 455 ENDVDCHEVDKIEFSQLHSLTLKFLPQ-LTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNL 533 (992)
Q Consensus 455 ~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L 533 (992)
....+++|++|+++++.. +..++.. .+ .....++|
T Consensus 348 ---------~~~~l~~L~~L~Ls~n~~~~~~l~~~----------------------------------~f-~~~~~~~L 383 (680)
T 1ziw_A 348 ---------MFTGLINLKYLSLSNSFTSLRTLTNE----------------------------------TF-VSLAHSPL 383 (680)
T ss_dssp ---------TTTTCTTCCEEECTTCBSCCCEECTT----------------------------------TT-GGGTTSCC
T ss_pred ---------HhccccCCcEEECCCCchhhhhcchh----------------------------------hh-cccccCcC
Confidence 112334444444444321 1111100 00 00113577
Q ss_pred ceeeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceee
Q 001951 534 ETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFV 613 (992)
Q Consensus 534 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~ 613 (992)
+.|++++|.+..+.+..+. .+++|+.|+++++ .++...|...+.++++|++|++++|. +..+....-. .
T Consensus 384 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~ 452 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFS--WLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFA-------L 452 (680)
T ss_dssp CEEECTTSCCCEECTTTTT--TCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTT-------T
T ss_pred ceEECCCCCCCeEChhhhh--CCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCC-cceeChhhhh-------c
Confidence 8888888876666554443 3678888888875 44432244556778888888888887 4444322111 5
Q ss_pred cCccCccccccCCc--cceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeeecCCce
Q 001951 614 FPKVTFLKLWNLSE--LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLE 691 (992)
Q Consensus 614 ~~~L~~L~l~~c~~--L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 691 (992)
+++|+.|++.++.- +..+|... ..+++|+.|++++| +++.++...+ ..+++|+
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N-~l~~i~~~~~----------------------~~l~~L~ 507 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN-NIANINDDML----------------------EGLEKLE 507 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS-CCCCCCTTTT----------------------TTCTTCC
T ss_pred CcccccchhccccccccccCCccc--ccCCCCCEEECCCC-CCCcCChhhh----------------------ccccccC
Confidence 67777777777542 23333322 24778888888875 4555542210 3467788
Q ss_pred EEeecCccccccccccCC------ccccccccEEEeecCCCCcccHHHHhhCCCCcEEEEEcceeEE
Q 001951 692 ELKLSGKDIAMICQSQFP------KHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKE 752 (992)
Q Consensus 692 ~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~i~~c~~~~~~~~~l~~l~~L~~L~i~c~~l~~ 752 (992)
+|++++|.....+...+| ...+++|+.|++.+|....+|...++++++|+.|+++.+.++.
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 888888777655433332 2334556666665554444454445555555555555444443
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.3e-35 Score=348.68 Aligned_cols=190 Identities=18% Similarity=0.211 Sum_probs=148.5
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
++++.+++.+..+|..+. +++++|++++|.+. .++...|.++++||+|++++|.++.+ |.+|+++++||+|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 567777778888887664 88999999999876 56666789999999999999999877 5678999999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCC--ccCccccCCCCCCCEEEeecCcccccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK--VIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~--~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (992)
+..+ ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+..
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~-- 167 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT-- 167 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE--
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee--
Confidence 8765 67999999999999999998886 679999999999999998 65 46776 8999999999999988761
Q ss_pred cccccCCCCCChhhhcCCCC-CCEEEeeccCCccCCCcc-ccCCccEEEE
Q 001951 243 EGLNVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL-FSKKLERYKI 290 (992)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~l~l 290 (992)
.....+..+.+++. +.+|++++|.+..++... ...+|+.+++
T Consensus 168 ------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 168 ------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp ------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred ------cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 11123344445544 558999998887776654 2224444444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-34 Score=341.83 Aligned_cols=178 Identities=20% Similarity=0.175 Sum_probs=147.5
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
++++..+..+.++|..+. +.+++|++++|.+. .+++..|.++++||+|++++|.+..+ |.+|+++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 456666677788887663 57999999999887 56666789999999999999999866 7789999999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+..+ ..++++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-----
Confidence 8754 6899999999999999999987 5679999999999999998 77763222566999999999999876
Q ss_pred cccCCCCCChhhhcCCCCCC--EEEeeccCCccCCCcc
Q 001951 245 LNVGRSNASLQELKLLSHLT--TLEIQICDAMILPKGL 280 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~ 280 (992)
...+..++.+++|+ .|++++|.+..++...
T Consensus 167 ------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 167 ------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp ------EECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ------ccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 34567788999999 8899988876665544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-33 Score=336.11 Aligned_cols=188 Identities=21% Similarity=0.207 Sum_probs=156.0
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l 148 (992)
..+.....+|. ++..++++|++++|.+..++.. + ++++||+|++++|.+. .+++..|.++++||+|++++|.+..+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 18 CMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred ccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccccc
Confidence 34445555553 5678999999999999988763 3 8999999999999877 56667789999999999999999987
Q ss_pred -CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCC--CCChhhhCCCCcCEEeecCCCCCCccCccccC
Q 001951 149 -PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLS 223 (992)
Q Consensus 149 -p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~--~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~ 223 (992)
|.+|+++++|++|++++|.+..+ ..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 174 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ 174 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhh
Confidence 78999999999999999998865 57999999999999999988 579999999999999999998 8887765577
Q ss_pred CCCCCC----EEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 224 GLSRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 224 ~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
.+.+|+ +|++++|.+. ......+. ..+|+.|++++|..
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~-----------~~~~~~~~-~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPID-----------FIQDQAFQ-GIKLHELTLRGNFN 216 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCC-----------EECTTTTT-TCEEEEEEEESCCS
T ss_pred hhhccccccceeeccCCCcc-----------eeCccccc-CceeeeeeccCCcc
Confidence 666665 8999999876 11222333 33799999999875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-33 Score=335.85 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=121.9
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 187 (992)
++++..+..+. .+|..+. ..+++|++++|.++.+ |.+|+++++||+|++++|.+..+ ..|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 46666666555 6776542 4689999999999977 66899999999999999998855 6799999999999999
Q ss_pred CCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEE
Q 001951 188 SNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (992)
Q Consensus 188 ~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (992)
|.+..+ |..++++++|++|++++|. +..++...++++++|++|++++|.+. ......+..+++|++|
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKVL 158 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCEE
T ss_pred CcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCEE
Confidence 999866 6789999999999999998 88875555899999999999999876 2223445558899999
Q ss_pred EeeccCCccC
Q 001951 267 EIQICDAMIL 276 (992)
Q Consensus 267 ~l~~~~~~~~ 276 (992)
++++|.+..+
T Consensus 159 ~L~~n~l~~~ 168 (606)
T 3t6q_A 159 DFQNNAIHYL 168 (606)
T ss_dssp ECCSSCCCEE
T ss_pred EcccCccccc
Confidence 9998876543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-31 Score=324.80 Aligned_cols=523 Identities=17% Similarity=0.160 Sum_probs=301.8
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCC-CC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL- 148 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l- 148 (992)
.+.+...+|. .+.++++|++++|.+..+.+ .+ .+++|++|++++|.....+++..|.++++||+|+|++|.+..+
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3445555565 67899999999999887754 33 7899999999998766677777789999999999999998866
Q ss_pred CcccCCCCCCcEEEccCCCCCC--ccc--ccCcccCcEEEccCCCCCCC--ChhhhCCCCcCEEeecCCCCCCccCcccc
Q 001951 149 PSLFHLPLNLQTLCLDRCALGD--IAI--IGNLKKLEILSLVDSNIEQL--PEEMAQLTQLRLFDLSGCSKLKVIPPNLL 222 (992)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~~l~~--l~~--i~~L~~L~~L~L~~~~l~~L--P~~i~~L~~L~~L~l~~~~~l~~~p~~~i 222 (992)
|..|+++++|++|+|++|.+.. +.. ++++++|++||+++|.+..+ +..++++++|++|++++|. +..+....+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHc
Confidence 7889999999999999999874 333 88999999999999988866 3578999999999999987 655544436
Q ss_pred CCC--CCCCEEEeecCcccccccccccCCCCCChhhhcCCC------CCCEEEeeccCCc-cCCCcc----ccCCccEEE
Q 001951 223 SGL--SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS------HLTTLEIQICDAM-ILPKGL----FSKKLERYK 289 (992)
Q Consensus 223 ~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~~~~L~~l~ 289 (992)
+.+ ++|++|++++|.+. ...+..++.+. +|+.|++++|.+. ..+..+ ....+..+.
T Consensus 169 ~~l~~~~L~~L~L~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp HHHHHCSSCCCEECCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred ccccCCccceEECCCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 766 88999999988776 11222233333 4889999888653 222222 223344443
Q ss_pred EEeCCccCccCCcCcceEEEeecccCChHH-HHHh--hcccceeeccccCCcccccccccccccccccEEEeecCCCeeE
Q 001951 290 IFIGDEWDWSGNYKNKRVLKLKLYTSNVDE-VIMQ--LKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILF 366 (992)
Q Consensus 290 l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~-~~~~--l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~ 366 (992)
+.......... ...+ ..... .+.. .++|+.|+++++. +....+. .+..+++|++|++++|.
T Consensus 238 l~~~~~~~~~~-~~~l---------~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~---- 301 (844)
T 3j0a_A 238 LAHHIMGAGFG-FHNI---------KDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSR-VFETLKDLKVLNLAYNK---- 301 (844)
T ss_dssp CCSSCCBCSSS-CSSS---------TTGGGTTTTTTTTSCCCEEECTTCC-CCEECSC-CSSSCCCCCEEEEESCC----
T ss_pred ccccccccccc-cccc---------CCCChhhhhccccCCccEEECCCCc-ccccChh-hhhcCCCCCEEECCCCc----
Confidence 32110000000 0000 00000 0000 1344444444422 1111111 12344444444444443
Q ss_pred EecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCc
Q 001951 367 IVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNM 446 (992)
Q Consensus 367 i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 446 (992)
+..+.. .....+++|+.|+++++ .++.+++ ..+..+++|+.|+++++ .+
T Consensus 302 --------------------------i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i 350 (844)
T 3j0a_A 302 --------------------------INKIAD--EAFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HI 350 (844)
T ss_dssp --------------------------CCEECT--TTTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CC
T ss_pred --------------------------CCCCCh--HHhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CC
Confidence 222211 11234455555555553 3333322 23455555666655553 23
Q ss_pred hhhhcccccCCccCCCccceecCcccEEeecCCCccccccccccchhhhhcccccccccCCCceeecccccCcccccccc
Q 001951 447 KEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNE 526 (992)
Q Consensus 447 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 526 (992)
..+++. ....+++|+.|+++++. ++.+ ..+++|+.|.++++.--.++ .
T Consensus 351 ~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~i--------~~~~~L~~L~l~~N~l~~l~---------~--- 398 (844)
T 3j0a_A 351 AIIQDQ-----------TFKFLEKLQTLDLRDNA-LTTI--------HFIPSIPDIFLSGNKLVTLP---------K--- 398 (844)
T ss_dssp CCCCSS-----------CSCSCCCCCEEEEETCC-SCCC--------SSCCSCSEEEEESCCCCCCC---------C---
T ss_pred CccChh-----------hhcCCCCCCEEECCCCC-CCcc--------cCCCCcchhccCCCCccccc---------c---
Confidence 333210 12334555555555542 2211 11344555555544311111 0
Q ss_pred cccccccceeeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccc
Q 001951 527 KVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 606 (992)
Q Consensus 527 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 606 (992)
...+++.|++++|.++.+..... ...+++|+.|+++++ +++...+......+++|+.|++++|. ++.++....
T Consensus 399 --~~~~l~~L~ls~N~l~~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~-- 471 (844)
T 3j0a_A 399 --INLTANLIHLSENRLENLDILYF-LLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETEL-- 471 (844)
T ss_dssp --CCTTCCEEECCSCCCCSSTTHHH-HTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCC--
T ss_pred --cccccceeecccCccccCchhhh-hhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-ccccccccc--
Confidence 14567777777777554321100 013678888888874 56554333334557788888888876 443322110
Q ss_pred cccceeecCccCccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeee
Q 001951 607 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 686 (992)
Q Consensus 607 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (992)
.......+++|+.|+++++ .++.++..... .+++|+.|+++++ +++.+|... .
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~------------------------~ 524 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHN-YLNSLPPGVFS-HLTALRGLSLNSN-RLTVLSHND------------------------L 524 (844)
T ss_dssp CSSCSSCBCCEECCCCCHH-HHTTCCTTSSS-SCCSCSEEEEESC-CCSSCCCCC------------------------C
T ss_pred chhhhcCcccccEEECCCC-cccccChhHcc-chhhhheeECCCC-CCCccChhh------------------------h
Confidence 0011115677888888876 45565554432 5788888888886 666665321 2
Q ss_pred cCCceEEeecCccccccccccCCccccccccEEEeecCCC
Q 001951 687 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDES 726 (992)
Q Consensus 687 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 726 (992)
.++|+.|++++|.+... +...+.+|+.|++.+|+.
T Consensus 525 ~~~L~~L~Ls~N~l~~~-----~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 525 PANLEILDISRNQLLAP-----NPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CSCCCEEEEEEECCCCC-----CSCCCSSCCEEEEEEECC
T ss_pred hccccEEECCCCcCCCC-----ChhHhCCcCEEEecCCCc
Confidence 36788888888877653 233456778888777654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=327.85 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=134.1
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCc-CccC-CcccCCCCCCcEEEccCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~l~~Lr~L~L~~~ 166 (992)
+..+.+++++..+|. -.+++++|++++|.+. .+....|.++++||+|++++|. +..+ |.+|+++++||+|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 355666778888887 4588999999998876 4555558999999999999984 4456 678999999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCC-CChh--hhCCCCcCEEeecCCCCCCccC-ccccCCCCCCCEEEeecCcccc
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVIP-PNLLSGLSRLEDLYMGNTSVKW 240 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~~ 240 (992)
.+..+ ..++++++|++|++++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-
Confidence 98854 788999999999999998875 5655 8899999999999988 65553 234789999999999998775
Q ss_pred cccccccCCCCCChhhhcCC--CCCCEEEeeccCCc
Q 001951 241 EFEGLNVGRSNASLQELKLL--SHLTTLEIQICDAM 274 (992)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~ 274 (992)
...+..+..+ ++|+.|+++.|.+.
T Consensus 162 ----------~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 162 ----------LVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp ----------CCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ----------eeCHHHcccccCCccceEECCCCccc
Confidence 2234455555 78888888887653
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=4.8e-31 Score=313.44 Aligned_cols=174 Identities=17% Similarity=0.320 Sum_probs=101.6
Q ss_pred EEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCC
Q 001951 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALG 169 (992)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~ 169 (992)
++..+.++.++|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..++ ..|+++++||+|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EECCSSCCSSCCSSSC-SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEeCCCCccccCCCcc-ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 3333334455554332 45666666666554 344445666666666666666666553 35666666666666666665
Q ss_pred Cc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCc--cCccccCCCCCCCEEEeecCcccccccc
Q 001951 170 DI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 170 ~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
.+ ..|+++++|++|++++|.+..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~----- 162 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ----- 162 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC-----
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc-----
Confidence 43 456666666666666666666654 46666666666666665 443 4554 666666677666666554
Q ss_pred cccCCCCCChhhhcCCCCC----CEEEeeccCCccCCCc
Q 001951 245 LNVGRSNASLQELKLLSHL----TTLEIQICDAMILPKG 279 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~ 279 (992)
...+..++.+++| +.|++++|.+..++..
T Consensus 163 ------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 163 ------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp ------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ------eecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 1122334444444 5666666665544443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=309.97 Aligned_cols=185 Identities=22% Similarity=0.228 Sum_probs=154.5
Q ss_pred CCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-
Q 001951 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP- 149 (992)
Q Consensus 73 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp- 149 (992)
+.....+|. .+...+++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++||+|++++|.+..+|
T Consensus 16 ~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCH
Confidence 334455553 5677899999999999888753 3 8999999999999876 677778999999999999999999876
Q ss_pred cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCC--CChhhhCCCCcCEEeecCCCCCCccCccccCCC
Q 001951 150 SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (992)
.+|+.+++||+|++++|.+..+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccch
Confidence 6899999999999999999877 359999999999999999885 79999999999999999998 888876658888
Q ss_pred CCC----CEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC
Q 001951 226 SRL----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 226 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
++| ++|++++|.+. ...+..+..+ +|+.|+++++.
T Consensus 173 ~~L~~~~~~L~l~~n~l~-----------~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMN-----------FIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp HTCTTCCCEEECTTCCCC-----------EECTTTTTTC-EEEEEEEESCC
T ss_pred hccchhhhhcccCCCCce-----------ecCHHHhccC-cceeEeccccc
Confidence 888 89999998876 2223344444 68888888764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.3e-30 Score=304.46 Aligned_cols=484 Identities=17% Similarity=0.156 Sum_probs=257.1
Q ss_pred cCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCc--
Q 001951 95 DCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI-- 171 (992)
Q Consensus 95 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l-- 171 (992)
++.+.++|..+. ++|++|++++|.+. .++...|.++++||+|++++|.+..++ .+|+.+++|++|++++|.+..+
T Consensus 14 ~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 14 SRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 334444444332 44555555555443 232233455555555555555554433 3455555555555555554433
Q ss_pred ccccCcccCcEEEccCCCCCC--CChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCC
Q 001951 172 AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (992)
Q Consensus 172 ~~i~~L~~L~~L~L~~~~l~~--LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (992)
..++++++|++|++++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------- 161 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---------- 161 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----------
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc----------
Confidence 225555555555555555442 23445555555555555554344444333455555555555554443
Q ss_pred CCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhccc
Q 001951 250 SNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGI 327 (992)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L 327 (992)
+..+..++++++|++|+++++....++... .+++|+.+++..+........... ....+++|
T Consensus 162 -~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------~~~~~~~L 225 (549)
T 2z81_A 162 -NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP---------------VDEVSSPM 225 (549)
T ss_dssp -EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS---------------SCCCCCCC
T ss_pred -ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccc---------------hhhhhhcc
Confidence 122334444555555555544443333322 234444444443322110000000 00012344
Q ss_pred ceeeccccCCcccccccc--cccccccccEEEeecCCCeeEEecCC--CccccccccccceeeccccccccceecCCCC-
Q 001951 328 EELYLDEVPGIKNVLYDL--DIEGFLQLKHLHVQNNPFILFIVDSM--AWVRYNAFLLLESLVLHNLIHLEKICLGQLR- 402 (992)
Q Consensus 328 ~~L~L~~~~~~~~~~~~l--~~~~l~~L~~L~l~~~~~~~~i~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~- 402 (992)
+.|++.++.-....+..+ ....+++|+.|++.+|... .+.+.. .+.....+++|+.|.+.++.--........+
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN-GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE-CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred cceeccccccchhHHHHHHHHhhhhcccccccccccccc-ccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 444444421111000000 0134556666666665411 110000 0122344566777776654211100000011
Q ss_pred -chhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCc
Q 001951 403 -AESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQ 481 (992)
Q Consensus 403 -~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 481 (992)
...+++|+.|++.++ +++.+|. ..+..+++|++|+++++.-...++... .....+++|++|+++++ .
T Consensus 305 ~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~~~~l~~L~~L~Ls~N-~ 372 (549)
T 2z81_A 305 VYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNS---------ACKGAWPSLQTLVLSQN-H 372 (549)
T ss_dssp HHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHH---------TCTTSSTTCCEEECTTS-C
T ss_pred hhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccch---------hhhhccccCcEEEccCC-c
Confidence 124578999999985 4777654 334678999999999976444332100 01245789999999987 3
Q ss_pred cccccccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcE
Q 001951 482 LTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTR 561 (992)
Q Consensus 482 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~ 561 (992)
++.++.. ...+..+++|++|++++|.--.++ .....+++|++|++++|.++.+... ..++|+.
T Consensus 373 l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp-----------~~~~~~~~L~~L~Ls~N~l~~l~~~-----~~~~L~~ 435 (549)
T 2z81_A 373 LRSMQKT-GEILLTLKNLTSLDISRNTFHPMP-----------DSCQWPEKMRFLNLSSTGIRVVKTC-----IPQTLEV 435 (549)
T ss_dssp CCCHHHH-HHHGGGCTTCCEEECTTCCCCCCC-----------SCCCCCTTCCEEECTTSCCSCCCTT-----SCTTCSE
T ss_pred ccccccc-hhhhhcCCCCCEEECCCCCCccCC-----------hhhcccccccEEECCCCCcccccch-----hcCCceE
Confidence 4443310 023567889999999988422111 1234578999999999997754332 2468999
Q ss_pred EEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCccceecCCCcccCCC
Q 001951 562 LIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWP 641 (992)
Q Consensus 562 L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~ 641 (992)
|++++| +++.+ + ..+++|++|++++|. ++.++... .+++|+.|+++++ .++.++..... .++
T Consensus 436 L~Ls~N-~l~~~-~----~~l~~L~~L~Ls~N~-l~~ip~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~ 497 (549)
T 2z81_A 436 LDVSNN-NLDSF-S----LFLPRLQELYISRNK-LKTLPDAS---------LFPVLLVMKISRN-QLKSVPDGIFD-RLT 497 (549)
T ss_dssp EECCSS-CCSCC-C----CCCTTCCEEECCSSC-CSSCCCGG---------GCTTCCEEECCSS-CCCCCCTTGGG-GCT
T ss_pred EECCCC-Chhhh-c----ccCChhcEEECCCCc-cCcCCCcc---------cCccCCEEecCCC-ccCCcCHHHHh-cCc
Confidence 999996 67765 2 468899999999996 77776531 6889999999996 56666654332 689
Q ss_pred cccEEEEecCCcc
Q 001951 642 MLKKLEVYGCDKV 654 (992)
Q Consensus 642 sL~~L~i~~C~~L 654 (992)
+|+.|++++|+-.
T Consensus 498 ~L~~L~l~~N~~~ 510 (549)
T 2z81_A 498 SLQKIWLHTNPWD 510 (549)
T ss_dssp TCCEEECCSSCBC
T ss_pred ccCEEEecCCCcc
Confidence 9999999998743
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.7e-29 Score=294.61 Aligned_cols=169 Identities=20% Similarity=0.269 Sum_probs=133.9
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEE
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEIL 183 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 183 (992)
|+...+.+.+++.+. .+|..++ ++|++|++++|.++.+ |.+|+++++||+|++++|.+..+ ..++++++|++|
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 344445666677666 7887653 7899999999999976 56899999999999999999865 679999999999
Q ss_pred EccCCCCCCCChh-hhCCCCcCEEeecCCCCCCcc--CccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCC
Q 001951 184 SLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 260 (992)
Q Consensus 184 ~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 260 (992)
++++|.+..+|.. ++++++|++|++++|. +..+ |.. ++++++|++|++++|.... ......++++
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~----------~~~~~~~~~l 147 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS----------EIRRIDFAGL 147 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC----------EECTTTTTTC
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc----------ccCHhhhhcc
Confidence 9999999988765 9999999999999998 7644 444 8999999999999987330 1223578889
Q ss_pred CCCCEEEeeccCCcc-CCCcc-ccCCccEEEEE
Q 001951 261 SHLTTLEIQICDAMI-LPKGL-FSKKLERYKIF 291 (992)
Q Consensus 261 ~~L~~L~l~~~~~~~-~~~~~-~~~~L~~l~l~ 291 (992)
++|++|++++|.+.. .+..+ .+.+|+.+++.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999999998754 34433 44555555544
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.6e-28 Score=294.35 Aligned_cols=177 Identities=17% Similarity=0.274 Sum_probs=134.7
Q ss_pred EeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCC
Q 001951 92 FLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD 170 (992)
Q Consensus 92 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~ 170 (992)
+-++.++.++|..+. +++++|++++|.+. .++...|.++++||+|+|++|.|+.+|+ +|+++++|++|+|++|.++.
T Consensus 37 ~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 333345677887663 57899999999877 6777778999999999999999998865 68999999999999999886
Q ss_pred c--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCcc--CccccCCCCCCCEEEeecCccccccccc
Q 001951 171 I--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 171 l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
+ ..|+++++|++|++++|.++.+|. .|+++++|++|++++|. +..+ |.. ++.+++|++|++++|.+...
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~---- 188 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI---- 188 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE----
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccc----
Confidence 6 568899999999999999998876 48999999999999987 6543 444 78899999999999887611
Q ss_pred ccCCCCCChhhhcCCCC-CCEEEeeccCCccCCCcc
Q 001951 246 NVGRSNASLQELKLLSH-LTTLEIQICDAMILPKGL 280 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~ 280 (992)
....+..+.++.. +..++++.+.+..++...
T Consensus 189 ----~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 189 ----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp ----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ----ccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 0112333444433 336778777776665544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=290.04 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=105.8
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
+++++++|.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |.+|+++++||+|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 577888888887777655 78888888888766 45555678888888888888888766 6678888888888888888
Q ss_pred CCCcccccCcccCcEEEccCCCCCC--CChhhhCCCCcCEEeecCCCCCCccCccccCCCCCC--CEEEeecCcc
Q 001951 168 LGDIAIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (992)
Q Consensus 168 l~~l~~i~~L~~L~~L~L~~~~l~~--LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 238 (992)
++.++.. .+++|++|++++|.+.. +|..++++++|++|++++|. +... . ++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~--~-~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS--S-VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG--G-GGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh--h-ccccccceeeEEEeecccc
Confidence 7766444 77888888888887775 46778888888888888776 5442 2 5666666 7777777765
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.7e-27 Score=283.35 Aligned_cols=523 Identities=16% Similarity=0.134 Sum_probs=323.2
Q ss_pred CCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc
Q 001951 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (992)
Q Consensus 73 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~ 150 (992)
+.+...+| .+++..+++|++++|.+..+++. + ++++||+|++++|.+. .+++.+|.++++|++|+|++|+++.+|.
T Consensus 40 ~~~l~~vP-~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TSCCSSCC-SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCcCccC-CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 33455555 35778999999999999999864 3 8999999999999887 6888889999999999999999999985
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCC--CChhhhCCCCcCEEeecCCCCCCccCccccCCC
Q 001951 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 151 -~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (992)
.|+++++|++|++++|.++.+ ..|+++++|++|++++|.+.. +|..++++++|++|++++|. +..++.+.+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccch
Confidence 689999999999999999877 469999999999999999874 57889999999999999998 888876556655
Q ss_pred CCCC----EEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCc-cCC-Ccc-ccCCccEEEEEeCCccCc
Q 001951 226 SRLE----DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-ILP-KGL-FSKKLERYKIFIGDEWDW 298 (992)
Q Consensus 226 ~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~-~~~-~~~~L~~l~l~~~~~~~~ 298 (992)
.+++ .++++.+.+.. ..........++.+++..+... ... ..+ .+..++...+..+.....
T Consensus 197 ~~l~~~~~~~~ls~n~l~~------------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp HTCTTCCCEEECTTCCCCE------------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred hhhhhhhhhhhcccCcccc------------cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 5443 56777666541 1111222233456666655321 111 111 234444443332221000
Q ss_pred cCCcCcceEEEeecccCChHHHHHhhcccceeeccccC--Cc-ccccccccccccccccEEEeecCCCeeEEecCCCccc
Q 001951 299 SGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVP--GI-KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVR 375 (992)
Q Consensus 299 ~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~--~~-~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~ 375 (992)
... . ......+.....+....+.... .. ..... .+....+++.+.+.++.. ..+ ..
T Consensus 265 ~~l-~-----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~~-~~~------~~ 323 (635)
T 4g8a_A 265 GNL-E-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDGIID--LFNCLTNVSSFSLVSVTI-ERV------KD 323 (635)
T ss_dssp CCC-S-----------CCCTTTTGGGGGSEEEEEEEECCCSCEEECTT--TTGGGTTCSEEEEESCEE-EEC------GG
T ss_pred ccc-c-----------cccccccccccchhhhhhhhhhhcccccchhh--hhhhhccccccccccccc-ccc------cc
Confidence 000 0 0000001112222222222111 00 01111 124556677777766542 111 22
Q ss_pred cccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhccccc
Q 001951 376 YNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRE 455 (992)
Q Consensus 376 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 455 (992)
......|+.|++.++.. . ......++.|+.+.+.+.. ....+. ...+++|+.|+++++. +......
T Consensus 324 ~~~~~~L~~L~l~~~~~-~-----~~~~~~l~~L~~l~l~~n~-~~~~~~---~~~l~~L~~L~ls~n~-l~~~~~~--- 389 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKF-G-----QFPTLKLKSLKRLTFTSNK-GGNAFS---EVDLPSLEFLDLSRNG-LSFKGCC--- 389 (635)
T ss_dssp GGSCCCCSEEEEESCEE-S-----SCCCCBCTTCCEEEEESCC-SCCBCC---CCBCTTCCEEECCSSC-CBEEEEC---
T ss_pred cccchhhhhhhcccccc-c-----CcCcccchhhhhccccccc-CCCCcc---cccccccccchhhccc-ccccccc---
Confidence 33445677777766431 1 2233456777888777633 333322 3467788888887643 2211100
Q ss_pred CCccCCCccceecCcccEEeecCCCccccccccccchhhhhcccccccccCCCceeecccccCcccccccccccccccce
Q 001951 456 NDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLET 535 (992)
Q Consensus 456 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 535 (992)
........+|+.+++..+....... .+..+++|+.+++..+...... .......+++++.
T Consensus 390 ------~~~~~~~~~L~~L~~~~~~~~~~~~-----~~~~l~~L~~l~l~~~~~~~~~---------~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 390 ------SQSDFGTISLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMS---------EFSVFLSLRNLIY 449 (635)
T ss_dssp ------CHHHHSCSCCCEEECCSCSEEEECS-----CCTTCTTCCEEECTTSEEESTT---------SSCTTTTCTTCCE
T ss_pred ------ccchhhhhhhhhhhccccccccccc-----cccccccccchhhhhccccccc---------ccccccccccccc
Confidence 0011235667777776654322211 2445667777777665433211 1122335778888
Q ss_pred eeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecC
Q 001951 536 LELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFP 615 (992)
Q Consensus 536 L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~ 615 (992)
+++++|.+.......+. .+++|+.|+++++.....+.| ..+..+++|++|++++|. ++.++...-+ .++
T Consensus 450 l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-------~l~ 518 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLS 518 (635)
T ss_dssp EECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCT
T ss_pred ccccccccccccccccc--cchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHc-------CCC
Confidence 88888887666554443 378899999988766666534 457788899999999886 7766533211 578
Q ss_pred ccCccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeeecCCceEEee
Q 001951 616 KVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKL 695 (992)
Q Consensus 616 ~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 695 (992)
+|+.|+|+++ +++.++..... .+++|+.|+++++ +++.++.+.+. ..+++|+.|++
T Consensus 519 ~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~---------------------~l~~~L~~L~L 574 (635)
T 4g8a_A 519 SLQVLNMSHN-NFFSLDTFPYK-CLNSLQVLDYSLN-HIMTSKKQELQ---------------------HFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTS-CCCBCCCGGGT-TCTTCCEEECTTS-CCCBCCSSCTT---------------------CCCTTCCEEEC
T ss_pred CCCEEECCCC-cCCCCChhHHh-CCCCCCEEECCCC-cCCCCCHHHHH---------------------hhhCcCCEEEe
Confidence 8899998886 46666544332 5889999999986 56655432110 22357888888
Q ss_pred cCccc
Q 001951 696 SGKDI 700 (992)
Q Consensus 696 ~~~~~ 700 (992)
++|+.
T Consensus 575 ~~Np~ 579 (635)
T 4g8a_A 575 TQNDF 579 (635)
T ss_dssp TTCCB
T ss_pred eCCCC
Confidence 87654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=7.1e-28 Score=291.00 Aligned_cols=163 Identities=14% Similarity=0.150 Sum_probs=82.9
Q ss_pred cCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccc
Q 001951 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (992)
Q Consensus 406 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 485 (992)
.++|+.|++++| .++.+|. ..+..+++|+.|+++++ .+..++....... ......+++|+.|+++++ .++.+
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~----~~~l~nl~~L~~L~Ls~N-~L~~l 743 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKPK----DGNYKNTYLLTTIDLRFN-KLTSL 743 (876)
T ss_dssp CCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSCT----TSCCTTGGGCCEEECCSS-CCCCC
T ss_pred CCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhccc----cccccccCCccEEECCCC-CCccc
Confidence 347788888774 4566554 33457788888888875 4444442100000 000012235666666554 22232
Q ss_pred cccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEe
Q 001951 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (992)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (992)
+.. +. ...+++|+.|++++|.+..+. ..+. .+++|+.|+++
T Consensus 744 p~~----l~--------------------------------~~~l~~L~~L~Ls~N~L~~lp-~~l~--~L~~L~~L~Ls 784 (876)
T 4ecn_A 744 SDD----FR--------------------------------ATTLPYLSNMDVSYNCFSSFP-TQPL--NSSQLKAFGIR 784 (876)
T ss_dssp CGG----GS--------------------------------TTTCTTCCEEECCSSCCSSCC-CGGG--GCTTCCEEECC
T ss_pred hHH----hh--------------------------------hccCCCcCEEEeCCCCCCccc-hhhh--cCCCCCEEECC
Confidence 220 10 013556666666666655432 1111 35666666665
Q ss_pred cC-----CCccccCchhhhhhhcCCCEEEEeccccccccccccccccccceeecCccCccccccCCc
Q 001951 566 GC-----EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSE 627 (992)
Q Consensus 566 ~C-----~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 627 (992)
++ +++....|. .+.++++|++|++++|. +..+|.. .+++|+.|+|++++.
T Consensus 785 ~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~-L~~Ip~~----------l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPT-GITTCPSLIQLQIGSND-IRKVDEK----------LTPQLYILDIADNPN 839 (876)
T ss_dssp CCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSC-CCBCCSC----------CCSSSCEEECCSCTT
T ss_pred CCCCcccccccccChH-HHhcCCCCCEEECCCCC-CCccCHh----------hcCCCCEEECCCCCC
Confidence 52 233333243 25566777777777766 4555542 235667777766653
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.9e-28 Score=287.94 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCCCEEEeecCCCc-ccCCCC-CCCCccEEEcCCCC
Q 001951 86 KNCPTIFLHDCKHW-EVPEGL-EYPQLEFFCMSPRD 119 (992)
Q Consensus 86 ~~~r~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~ 119 (992)
.+++.|++.++.+. .+|+.+ .+++||+|++++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence 47888888888875 667666 78899999998874
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=276.11 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=41.6
Q ss_pred ccccEEEEeccCCcccccCCccccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCc
Q 001951 795 ENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 856 (992)
Q Consensus 795 ~~L~~L~i~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~ 856 (992)
++|++|++++| .++.+|.....+++|++|++++| +++.+|.. ....+++|++|++++++
T Consensus 421 ~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence 56777777776 34566766677788888888876 57776543 45667788888888765
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4.7e-27 Score=280.19 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcC
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQF 145 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i 145 (992)
.+++.|+++++.+.+.+|+. |.++++||+|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGE 117 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGG
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCcc
Confidence 57899999999988788865 68999999999999975
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=9.8e-27 Score=274.68 Aligned_cols=144 Identities=23% Similarity=0.297 Sum_probs=103.3
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~ 166 (992)
.++++++++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |.+|+++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3778888888877776553 77888888887766 55555677888888888888887766 566777888888888888
Q ss_pred CCCCcccccCcccCcEEEccCCCCCCCC--hhhhCCCCcCEEeecCCCCCCccCccccCCCCCC--CEEEeecCcc
Q 001951 167 ALGDIAIIGNLKKLEILSLVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL--EDLYMGNTSV 238 (992)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~L~~~~l~~LP--~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 238 (992)
.++.++.. .+++|++|++++|.+..+| ..++++++|++|++++|. +...+ ++.+++| ++|++++|.+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 77766433 7778888888888777654 677778888888887776 54432 4444444 7777777765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.6e-26 Score=271.03 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=123.0
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (992)
.+...++++++++.+. .+|..++ ++|++|++++|.+..+| .+|+++++||+|++++|.++.+ ..++++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4455689999999887 6887653 78999999999999887 5899999999999999999865 67999999999
Q ss_pred EEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCC
Q 001951 183 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (992)
Q Consensus 183 L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 261 (992)
||+++|.++.+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+. ...+..+.++
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L- 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL- 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-
Confidence 99999999999987 89999999999998 887652 33899999999999999875 2233444444
Q ss_pred CCCEEEeeccCC
Q 001951 262 HLTTLEIQICDA 273 (992)
Q Consensus 262 ~L~~L~l~~~~~ 273 (992)
+|+.|++++|.+
T Consensus 170 ~L~~L~L~~n~l 181 (562)
T 3a79_B 170 HLSCILLDLVSY 181 (562)
T ss_dssp CEEEEEEEESSC
T ss_pred eeeEEEeecccc
Confidence 459999999876
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.3e-26 Score=277.85 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCCCCChhhhCCCCcCEEeecCCCCCCc------------------cCccccC--CCCCCCEEEeecCccccccccccc
Q 001951 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKV------------------IPPNLLS--GLSRLEDLYMGNTSVKWEFEGLNV 247 (992)
Q Consensus 188 ~~l~~LP~~i~~L~~L~~L~l~~~~~l~~------------------~p~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~ 247 (992)
|++..+|.++++|++|++|++++|. +.. +|.. ++ ++++|++|++++|.+.
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~-------- 504 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNM-------- 504 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTC--------
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCC--------
Confidence 4455567777777777777777776 555 6666 55 7777777777776554
Q ss_pred CCCCCChhhhcCCCCCCEEEeeccC
Q 001951 248 GRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
+..+..++++++|+.|++++|.
T Consensus 505 ---~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 505 ---TQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp ---CSCCGGGGGCSSCCEEECTTCT
T ss_pred ---ccChHHHhCCCCCCEEECcCCC
Confidence 3345666777777777776665
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7e-25 Score=252.23 Aligned_cols=346 Identities=21% Similarity=0.276 Sum_probs=181.8
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccC
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVD 187 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~ 187 (992)
+++++|.+.++.+. .++. +..+++|++|++++|.+..+|. ++.+++||+|++++|.+..+..++++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCC
Confidence 34444444444433 2332 4555666666666666665554 566666666666666655553466666666666666
Q ss_pred CCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEE
Q 001951 188 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (992)
Q Consensus 188 ~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (992)
|.+..+|. ++++++|++|++++|. +..++. ++++++|++|++.++. . ....++++++|+.|+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~-~-------------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQV-T-------------DLKPLANLTTLERLD 183 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESC-C-------------CCGGGTTCTTCCEEE
T ss_pred CCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCcc-c-------------CchhhccCCCCCEEE
Confidence 66665553 6666666666666665 555543 5666666666654321 1 122355666666666
Q ss_pred eeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCcccccccccc
Q 001951 268 IQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDI 347 (992)
Q Consensus 268 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 347 (992)
+++|.+..++. +..+++|++|++.++. +....+ .
T Consensus 184 l~~n~l~~~~~------------------------------------------l~~l~~L~~L~l~~n~-l~~~~~---~ 217 (466)
T 1o6v_A 184 ISSNKVSDISV------------------------------------------LAKLTNLESLIATNNQ-ISDITP---L 217 (466)
T ss_dssp CCSSCCCCCGG------------------------------------------GGGCTTCSEEECCSSC-CCCCGG---G
T ss_pred CcCCcCCCChh------------------------------------------hccCCCCCEEEecCCc-cccccc---c
Confidence 66554432211 0123344555554422 222222 2
Q ss_pred cccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccccchh
Q 001951 348 EGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFS 427 (992)
Q Consensus 348 ~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 427 (992)
+.+++|++|++++|. ++ +......+++|++|+++++. +... .+...+++|+.|++.+| .++.+++
T Consensus 218 ~~l~~L~~L~l~~n~-l~------~~~~l~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~-- 282 (466)
T 1o6v_A 218 GILTNLDELSLNGNQ-LK------DIGTLASLTNLTDLDLANNQ-ISNL----APLSGLTKLTELKLGAN-QISNISP-- 282 (466)
T ss_dssp GGCTTCCEEECCSSC-CC------CCGGGGGCTTCSEEECCSSC-CCCC----GGGTTCTTCSEEECCSS-CCCCCGG--
T ss_pred cccCCCCEEECCCCC-cc------cchhhhcCCCCCEEECCCCc-cccc----hhhhcCCCCCEEECCCC-ccCcccc--
Confidence 567778888887775 21 11234455666666666642 2221 11345566666666653 3444432
Q ss_pred hhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccccccccchhhhhcccccccccCC
Q 001951 428 FVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTL 507 (992)
Q Consensus 428 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 507 (992)
+..+++|++|++++|. +..++ ....+++|+.|+++++. ++...
T Consensus 283 -~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~--------------------- 325 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQ-LEDIS-------------PISNLKNLTYLTLYFNN-ISDIS--------------------- 325 (466)
T ss_dssp -GTTCTTCSEEECCSSC-CSCCG-------------GGGGCTTCSEEECCSSC-CSCCG---------------------
T ss_pred -ccCCCccCeEEcCCCc-ccCch-------------hhcCCCCCCEEECcCCc-CCCch---------------------
Confidence 4455666666665532 32222 11234444444444431 11111
Q ss_pred CceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCE
Q 001951 508 PREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEH 587 (992)
Q Consensus 508 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~ 587 (992)
....+++|+.|++++|.++.+. .+ ..+++|+.|++++| .++...| +..+++|+.
T Consensus 326 ------------------~~~~l~~L~~L~l~~n~l~~~~--~l--~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~ 379 (466)
T 1o6v_A 326 ------------------PVSSLTKLQRLFFYNNKVSDVS--SL--ANLTNINWLSAGHN-QISDLTP---LANLTRITQ 379 (466)
T ss_dssp ------------------GGGGCTTCCEEECCSSCCCCCG--GG--TTCTTCCEEECCSS-CCCBCGG---GTTCTTCCE
T ss_pred ------------------hhccCccCCEeECCCCccCCch--hh--ccCCCCCEEeCCCC-ccCccch---hhcCCCCCE
Confidence 1224667777777777755441 11 23677888888775 4565533 567778888
Q ss_pred EEEeccccccccc
Q 001951 588 LEICYCSSLESIV 600 (992)
Q Consensus 588 L~i~~c~~l~~i~ 600 (992)
|++++|+ ++.+|
T Consensus 380 L~l~~n~-~~~~p 391 (466)
T 1o6v_A 380 LGLNDQA-WTNAP 391 (466)
T ss_dssp EECCCEE-EECCC
T ss_pred EeccCCc-ccCCc
Confidence 8888777 55443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.2e-25 Score=251.65 Aligned_cols=346 Identities=18% Similarity=0.211 Sum_probs=265.3
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
+.++++|++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 5689999999999988887558999999999999877 4554 7999999999999999998887 9999999999999
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+|.+..++.++++++|++|++++|.+..+| .++++.+|++|+++++ +..++. ++++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC-----
Confidence 999998877999999999999999999887 5999999999999743 556655 899999999999999875
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhh
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQL 324 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l 324 (992)
.+..+..+++|+.|++++|.+...+. ...+
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~~~~------------------------------------------~~~l 220 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISDITP------------------------------------------LGIL 220 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCCCGG------------------------------------------GGGC
T ss_pred --------CChhhccCCCCCEEEecCCccccccc------------------------------------------cccc
Confidence 23568899999999999987654322 1225
Q ss_pred cccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCch
Q 001951 325 KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAE 404 (992)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (992)
++|+.|++.++. +.. .+.+ ..+++|++|++++|.-. .......+++|++|+++++ .+..+ .+..
T Consensus 221 ~~L~~L~l~~n~-l~~-~~~l--~~l~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~ 284 (466)
T 1o6v_A 221 TNLDELSLNGNQ-LKD-IGTL--ASLTNLTDLDLANNQIS-------NLAPLSGLTKLTELKLGAN-QISNI----SPLA 284 (466)
T ss_dssp TTCCEEECCSSC-CCC-CGGG--GGCTTCSEEECCSSCCC-------CCGGGTTCTTCSEEECCSS-CCCCC----GGGT
T ss_pred CCCCEEECCCCC-ccc-chhh--hcCCCCCEEECCCCccc-------cchhhhcCCCCCEEECCCC-ccCcc----cccc
Confidence 577777777643 332 2333 78899999999998621 2234677899999999885 34433 2256
Q ss_pred hcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCcccc
Q 001951 405 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 484 (992)
Q Consensus 405 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 484 (992)
.+++|+.|++.+| +++.+++ +..+++|+.|++++|. +..+. ....+++|++|+++++ .++.
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS-------------PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG-------------GGGGCTTCCEEECCSS-CCCC
T ss_pred CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch-------------hhccCccCCEeECCCC-ccCC
Confidence 7899999999995 5777654 7889999999999974 44444 1346889999999887 3333
Q ss_pred ccccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEE
Q 001951 485 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 564 (992)
Q Consensus 485 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l 564 (992)
++. +. .+++|+.|++++|.+....+ ...+++|+.|++
T Consensus 346 ~~~-----l~----------------------------------~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l 382 (466)
T 1o6v_A 346 VSS-----LA----------------------------------NLTNINWLSAGHNQISDLTP----LANLTRITQLGL 382 (466)
T ss_dssp CGG-----GT----------------------------------TCTTCCEEECCSSCCCBCGG----GTTCTTCCEEEC
T ss_pred chh-----hc----------------------------------cCCCCCEEeCCCCccCccch----hhcCCCCCEEec
Confidence 221 22 35667777777776554433 124677888888
Q ss_pred ecCCCcccc
Q 001951 565 HGCEKLKYL 573 (992)
Q Consensus 565 ~~C~~L~~l 573 (992)
++| .++.+
T Consensus 383 ~~n-~~~~~ 390 (466)
T 1o6v_A 383 NDQ-AWTNA 390 (466)
T ss_dssp CCE-EEECC
T ss_pred cCC-cccCC
Confidence 875 45544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.9e-25 Score=252.57 Aligned_cols=352 Identities=19% Similarity=0.170 Sum_probs=196.8
Q ss_pred CCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-cCCcccCCCCCC-------------cEEEccCCCCC
Q 001951 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNL-------------QTLCLDRCALG 169 (992)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~L-------------r~L~L~~~~l~ 169 (992)
.+..+.||+|++++|.+ +.+|.. |.++++|++|++++|.+. .+|.+++++++| ++|++++|.++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 34456777777777776 467765 577888888888887776 677777777764 77888877776
Q ss_pred CcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCC
Q 001951 170 DIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (992)
Q Consensus 170 ~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (992)
.++.+ .++|++|++++|.++.+|.. +.+|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 85 ~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~---------- 144 (454)
T 1jl5_A 85 SLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE---------- 144 (454)
T ss_dssp CCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS----------
T ss_pred cCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC----------
Confidence 65443 36778888888777777753 3677788887776 6666542 157788888777664
Q ss_pred CCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccce
Q 001951 250 SNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEE 329 (992)
Q Consensus 250 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~ 329 (992)
. +.+++++++|++|++++|.+..+|... .+|++
T Consensus 145 -~--lp~~~~l~~L~~L~l~~N~l~~lp~~~--------------------------------------------~~L~~ 177 (454)
T 1jl5_A 145 -K--LPELQNSSFLKIIDVDNNSLKKLPDLP--------------------------------------------PSLEF 177 (454)
T ss_dssp -S--CCCCTTCTTCCEEECCSSCCSCCCCCC--------------------------------------------TTCCE
T ss_pred -C--CcccCCCCCCCEEECCCCcCcccCCCc--------------------------------------------ccccE
Confidence 1 225777777888888777766554432 24455
Q ss_pred eeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCc
Q 001951 330 LYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKL 409 (992)
Q Consensus 330 L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 409 (992)
|+++++ .++. +|.+ +.+++|++|++++|.- ..+ + ...++|++|+++++ .++.+. ..+.+++|
T Consensus 178 L~L~~n-~l~~-l~~~--~~l~~L~~L~l~~N~l-~~l------~--~~~~~L~~L~l~~n-~l~~lp----~~~~l~~L 239 (454)
T 1jl5_A 178 IAAGNN-QLEE-LPEL--QNLPFLTAIYADNNSL-KKL------P--DLPLSLESIVAGNN-ILEELP----ELQNLPFL 239 (454)
T ss_dssp EECCSS-CCSS-CCCC--TTCTTCCEEECCSSCC-SSC------C--CCCTTCCEEECCSS-CCSSCC----CCTTCTTC
T ss_pred EECcCC-cCCc-Cccc--cCCCCCCEEECCCCcC-CcC------C--CCcCcccEEECcCC-cCCccc----ccCCCCCC
Confidence 555442 2222 2333 5666777777766641 111 0 11246667766664 333331 13456777
Q ss_pred cEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccccccc
Q 001951 410 KIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQV 489 (992)
Q Consensus 410 ~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 489 (992)
+.|++.+ ++++.+|. .+++|++|+++++ .+..++ ..+++|+.|+++++. ++.++.
T Consensus 240 ~~L~l~~-N~l~~l~~-----~~~~L~~L~l~~N-~l~~l~---------------~~~~~L~~L~ls~N~-l~~l~~-- 294 (454)
T 1jl5_A 240 TTIYADN-NLLKTLPD-----LPPSLEALNVRDN-YLTDLP---------------ELPQSLTFLDVSENI-FSGLSE-- 294 (454)
T ss_dssp CEEECCS-SCCSSCCS-----CCTTCCEEECCSS-CCSCCC---------------CCCTTCCEEECCSSC-CSEESC--
T ss_pred CEEECCC-CcCCcccc-----cccccCEEECCCC-cccccC---------------cccCcCCEEECcCCc-cCcccC--
Confidence 7777776 34555542 2467777777764 344443 124667777777653 333321
Q ss_pred cchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEecCCC
Q 001951 490 KTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEK 569 (992)
Q Consensus 490 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~C~~ 569 (992)
..++|+.|+++++.--.++ . ..++|++|++++|.++.+.. .+++|+.|++++| +
T Consensus 295 -----~~~~L~~L~l~~N~l~~i~---------~-----~~~~L~~L~Ls~N~l~~lp~------~~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 295 -----LPPNLYYLNASSNEIRSLC---------D-----LPPSLEELNVSNNKLIELPA------LPPRLERLIASFN-H 348 (454)
T ss_dssp -----CCTTCCEEECCSSCCSEEC---------C-----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSS-C
T ss_pred -----cCCcCCEEECcCCcCCccc---------C-----CcCcCCEEECCCCccccccc------cCCcCCEEECCCC-c
Confidence 1246666777666321111 0 12478888888887665322 2578888888875 6
Q ss_pred ccccCchhhhhhhcCCCEEEEecccccccc
Q 001951 570 LKYLFPSSMIRNFVQLEHLEICYCSSLESI 599 (992)
Q Consensus 570 L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i 599 (992)
++.+ |. .+++|++|++++|. ++.+
T Consensus 349 l~~l-p~----~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 349 LAEV-PE----LPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp CSCC-CC----CCTTCCEEECCSSC-CSSC
T ss_pred cccc-cc----hhhhccEEECCCCC-CCcC
Confidence 7766 43 36788888888876 5543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.8e-24 Score=248.87 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=81.3
Q ss_pred cCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCCccccc
Q 001951 406 FYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSF 485 (992)
Q Consensus 406 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 485 (992)
.++|+.|++.++ ++...++ ..+..+++|++|+++++. +..+.+. ....+++|++|+++++. ++.+
T Consensus 274 ~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~~ 338 (455)
T 3v47_A 274 ASGVKTCDLSKS-KIFALLK-SVFSHFTDLEQLTLAQNE-INKIDDN-----------AFWGLTHLLKLNLSQNF-LGSI 338 (455)
T ss_dssp TSCCCEEECCSS-CCCEECT-TTTTTCTTCCEEECTTSC-CCEECTT-----------TTTTCTTCCEEECCSSC-CCEE
T ss_pred ccCceEEEecCc-cccccch-hhcccCCCCCEEECCCCc-ccccChh-----------HhcCcccCCEEECCCCc-cCCc
Confidence 467788888774 3444433 346778888888888753 3333210 12345666666666652 2222
Q ss_pred cccccchhhhhcccccccccCCCceeecccccCcccccccccccccccceeeccccccccccccCccccccCCCcEEEEe
Q 001951 486 YSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 565 (992)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~ 565 (992)
.. .....+++|++|++++|.++.+.+..+.. +++|+.|+++
T Consensus 339 ~~-------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~ 379 (455)
T 3v47_A 339 DS-------------------------------------RMFENLDKLEVLDLSYNHIRALGDQSFLG--LPNLKELALD 379 (455)
T ss_dssp CG-------------------------------------GGGTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECC
T ss_pred Ch-------------------------------------hHhcCcccCCEEECCCCcccccChhhccc--cccccEEECC
Confidence 11 01123667777777777766654444433 7888888888
Q ss_pred cCCCccccCchhhhhhhcCCCEEEEeccc
Q 001951 566 GCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (992)
Q Consensus 566 ~C~~L~~l~p~~~l~~l~~L~~L~i~~c~ 594 (992)
+ ++++.+ |...+..+++|++|++++++
T Consensus 380 ~-N~l~~~-~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 380 T-NQLKSV-PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp S-SCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred C-CccccC-CHhHhccCCcccEEEccCCC
Confidence 8 467776 55556778888888888877
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.2e-24 Score=241.83 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
++++++|++++|.+..+|....+++|++|++++|.+. .++ |..+++|++|++++|.++.+| ++.+++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 4566666666666665553335666666666666554 233 456666666666666666554 5666666666666
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+|.+..++ ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~----- 183 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT----- 183 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-----
Confidence 66655543 566666666666666666553 5666666666666664455542 456666666666666554
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCc
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (992)
. + .++.+++|+.|++++|.+.
T Consensus 184 ------~--l-~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 184 ------E--L-DVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ------C--C-CCTTCTTCCEEECCSSCCS
T ss_pred ------e--e-ccccCCCCCEEECcCCcCC
Confidence 1 1 1455556666666655543
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.1e-24 Score=234.27 Aligned_cols=169 Identities=17% Similarity=0.254 Sum_probs=97.3
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
+++++++++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| ++..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 4566667776666665554335666666666666554 3333 556666666666666666554 46666666666666
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+|.+..++.+..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE----- 190 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC-----
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc-----
Confidence 666665544666666666666666333333346666666666666665 555544 556666666666665543
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
....+..+++|+.|+++++.+
T Consensus 191 --------~~~~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 191 --------DISPLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCC
T ss_pred --------ccccccCCCccceeecccCCC
Confidence 122255556666666655544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.7e-24 Score=246.21 Aligned_cols=146 Identities=21% Similarity=0.287 Sum_probs=83.4
Q ss_pred EEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-cC-CcccCCCCCCcEEEccCCC
Q 001951 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-SL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
.+...++.+..+|. + .++|++|++++|.+. .++...|.++++|++|++++|.+. .+ |..|..+++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L-PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C-CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C-CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 34444455555555 1 256666666666554 343344566666666666666654 33 3456666666666666666
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCC-CChh--hhCCCCcCEEeecCCCCCCcc-CccccCCCCCCCEEEeecCccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQ-LPEE--MAQLTQLRLFDLSGCSKLKVI-PPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~l~~~-p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+..+ ..++++++|++|++++|.+.. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence 5533 456666666666666666653 3333 6666666666666665 4444 3333456666666666666554
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=6.2e-24 Score=241.58 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=118.7
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCC-------------CcEEEeeCCcCccCCc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSN-------------LRGLALSNMQFLSLPS 150 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~-------------Lr~L~Ls~~~i~~lp~ 150 (992)
...++.+++++|.+..+|..+ ++++|++|++++|.+.+.+|.. +.++++ +++|+++++.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 467889999999998899877 7899999999888876667755 466665 4999999999988886
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCE
Q 001951 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLED 230 (992)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~ 230 (992)
. .++|++|++++|.++.++.. +.+|++|++++|.+..+|.. ..+|++|++++|. +..+| + ++++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCE
Confidence 3 47899999999988876432 47899999999988887742 2689999999987 88888 4 899999999
Q ss_pred EEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEE
Q 001951 231 LYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 291 (992)
Q Consensus 231 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 291 (992)
|++++|.+.. .+. ...+|++|++++|.+..+|....+++|+.+++.
T Consensus 158 L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 158 IDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp EECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred EECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence 9999987651 111 124899999999888776632245555555443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.8e-23 Score=229.50 Aligned_cols=303 Identities=18% Similarity=0.246 Sum_probs=237.6
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (992)
.+++|++|++.++.+. .++. |..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.++++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 5789999999998876 5554 7889999999999999998887 9999999999999999998888999999999999
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
++|.+..+|. +..+++|++|++++|..+..++. ++.+++|++|++++|.+. ....+..+++|+.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYS 181 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCE
Confidence 9999999886 99999999999999975666665 899999999999998765 2333888999999
Q ss_pred EEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCcccccccc
Q 001951 266 LEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDL 345 (992)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 345 (992)
|++++|.+..++....+.+|+.+.+..+... .++. +..+++|++|+++++. +....+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------------------~~~~-~~~~~~L~~L~l~~n~-l~~~~~-- 238 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQIT-------------------DITP-VANMTRLNSLKIGNNK-ITDLSP-- 238 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCC-------------------CCGG-GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred EEccCCcccccccccCCCccceeecccCCCC-------------------CCch-hhcCCcCCEEEccCCc-cCCCcc--
Confidence 9999998877766446778888877654431 1111 3457789999998853 333322
Q ss_pred cccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCccccc
Q 001951 346 DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFS 425 (992)
Q Consensus 346 ~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 425 (992)
+..+++|++|++++|. +.. ......+++|++|+++++ .++.+ .....+++|+.|++++|. ++..++
T Consensus 239 -~~~l~~L~~L~l~~n~-l~~------~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQ-ISD------INAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp -GTTCTTCCEEECCSSC-CCC------CGGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-CCGGGH
T ss_pred -hhcCCCCCEEECCCCc-cCC------ChhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-CCCcCh
Confidence 3788999999999885 221 244667889999999886 44443 124578999999999964 555443
Q ss_pred hhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecCCC
Q 001951 426 FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 480 (992)
Q Consensus 426 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 480 (992)
..+..+++|++|++++|. +..++ ....+++|++|++++++
T Consensus 305 -~~l~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 -EVIGGLTNLTTLFLSQNH-ITDIR-------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHTCTTCSEEECCSSS-CCCCG-------------GGGGCTTCSEESSSCC-
T ss_pred -hHhhccccCCEEEccCCc-ccccc-------------Chhhhhccceeehhhhc
Confidence 457889999999999975 55555 23568999999999875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.7e-23 Score=234.57 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=123.3
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (992)
.+++|++|++++|.+. .+| .|..+++|++|++++|.++.+| ++.+++|++|++++|.+..++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 4688999999998877 455 3788999999999999999886 889999999999999988775 889999999999
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
++|.+..+| ++++++|++|++++|. +..++ ++++++|++|++++|... +. + .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~~-~-~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------TK-L-DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------CC-C-CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------cc-c-ccccCCcCCE
Confidence 999999886 8999999999999998 77775 788999999999888533 11 1 4778889999
Q ss_pred EEeeccCCccCC
Q 001951 266 LEIQICDAMILP 277 (992)
Q Consensus 266 L~l~~~~~~~~~ 277 (992)
|++++|.+..++
T Consensus 175 L~ls~n~l~~l~ 186 (457)
T 3bz5_A 175 LDCSFNKITELD 186 (457)
T ss_dssp EECCSSCCCCCC
T ss_pred EECCCCccceec
Confidence 999988776554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.9e-23 Score=232.01 Aligned_cols=155 Identities=15% Similarity=0.286 Sum_probs=122.0
Q ss_pred CCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccC
Q 001951 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKL 180 (992)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L 180 (992)
.+.++++|+|++.++.+. .+|..+|.++++|++|++++|.+..+|. +|+.+++|++|++++|.+..+ ..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346688888888887765 6787878888888888888888887754 788888888888888887765 557888888
Q ss_pred cEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcC
Q 001951 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (992)
Q Consensus 181 ~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (992)
++|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. . ..++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~---~~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------H---VDLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------B---CCGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------c---ccccc
Confidence 8888888888888876 4788888888888887 77776666788888888888888765 1 13566
Q ss_pred CCCCCEEEeeccCCc
Q 001951 260 LSHLTTLEIQICDAM 274 (992)
Q Consensus 260 l~~L~~L~l~~~~~~ 274 (992)
+++|+.|+++++.+.
T Consensus 185 l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 185 IPSLFHANVSYNLLS 199 (390)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred ccccceeeccccccc
Confidence 777888888777654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8e-23 Score=229.52 Aligned_cols=301 Identities=19% Similarity=0.223 Sum_probs=226.2
Q ss_pred CCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEE
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTL 161 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L 161 (992)
+.+++++++.++.+..+|... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+| ..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999864 7899999999999876 677667899999999999999999875 568999999999
Q ss_pred EccCCCCCCc-c-cccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 162 CLDRCALGDI-A-IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 162 ~L~~~~l~~l-~-~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
++++|.+..+ . .++++++|++|++++|.+..++ ..++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 9999999977 3 3689999999999999999875 469999999999999998 88876 57789999999998876
Q ss_pred cccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChH
Q 001951 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (992)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (992)
. .+....+|+.|++++|.+..++...
T Consensus 199 ~----------------~~~~~~~L~~L~l~~n~l~~~~~~~-------------------------------------- 224 (390)
T 3o6n_A 199 S----------------TLAIPIAVEELDASHNSINVVRGPV-------------------------------------- 224 (390)
T ss_dssp S----------------EEECCSSCSEEECCSSCCCEEECCC--------------------------------------
T ss_pred c----------------ccCCCCcceEEECCCCeeeeccccc--------------------------------------
Confidence 4 3445568999999999876554432
Q ss_pred HHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceec
Q 001951 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (992)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (992)
.++|+.|++.++ .+.+ .+.+ ..+++|++|++++|.-....+ ..+..+++|++|+++++ .++.+.
T Consensus 225 -----~~~L~~L~l~~n-~l~~-~~~l--~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~- 288 (390)
T 3o6n_A 225 -----NVELTILKLQHN-NLTD-TAWL--LNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNN-RLVALN- 288 (390)
T ss_dssp -----CSSCCEEECCSS-CCCC-CGGG--GGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECCSS-CCCEEE-
T ss_pred -----cccccEEECCCC-CCcc-cHHH--cCCCCccEEECCCCcCCCcCh-----hHccccccCCEEECCCC-cCcccC-
Confidence 235556666553 2222 2333 667778888887775322111 23455677888887773 444432
Q ss_pred CCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecC
Q 001951 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (992)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (992)
.....+++|+.|++++| +++.++. .+..+++|++|+++++. +..++ ...+++|+.|++++
T Consensus 289 --~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~--------------~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 289 --LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSH 348 (390)
T ss_dssp --CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCS
T ss_pred --cccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC--------------chhhccCCEEEcCC
Confidence 12246788888888885 5666654 25678888888888854 43332 24577888888877
Q ss_pred CC
Q 001951 479 LP 480 (992)
Q Consensus 479 ~~ 480 (992)
++
T Consensus 349 N~ 350 (390)
T 3o6n_A 349 ND 350 (390)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=232.46 Aligned_cols=176 Identities=22% Similarity=0.325 Sum_probs=130.5
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
+.+...++.+..+|..+. +++++|++++|.+. .++...|.++++|++|+|++|.+..+ |.+|+++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666666777776553 57888888888766 45555678888888888888888765 6678888888888888888
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+..+ ..++++++|++|++++|.+..+ |..+.++.+|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----
Confidence 7766 3577888888888888887755 5567888888888888887 77666555788888888888887765
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
......+.++++|+.|++++|.+..++.
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 2344567788888888888877655544
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.7e-22 Score=236.66 Aligned_cols=155 Identities=15% Similarity=0.286 Sum_probs=129.0
Q ss_pred CCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccC
Q 001951 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKL 180 (992)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L 180 (992)
.+.+++++.+++.+|.+. .+|..+|.++++|++|++++|.+..+|. +|+.+++|++|+|++|.+..+ ..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 446788999999888766 6888888999999999999999987754 889999999999999998866 467899999
Q ss_pred cEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcC
Q 001951 181 EILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 259 (992)
Q Consensus 181 ~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (992)
++|++++|.+..+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. . ..++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~---~~~~~ 190 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------H---VDLSL 190 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------B---CCGGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------C---cChhh
Confidence 9999999999998876 4899999999999997 77777766889999999999988775 1 13566
Q ss_pred CCCCCEEEeeccCCc
Q 001951 260 LSHLTTLEIQICDAM 274 (992)
Q Consensus 260 l~~L~~L~l~~~~~~ 274 (992)
+++|+.|++++|.+.
T Consensus 191 l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 191 IPSLFHANVSYNLLS 205 (597)
T ss_dssp CTTCSEEECCSSCCS
T ss_pred hhhhhhhhcccCccc
Confidence 788888888877654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.5e-22 Score=235.95 Aligned_cols=301 Identities=19% Similarity=0.224 Sum_probs=227.7
Q ss_pred CCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEE
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTL 161 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L 161 (992)
+.+++.+++.++.+..+|... .+++|++|++++|.+. .++...|..+++|++|+|++|.+..+|. .|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 568899999999999999865 7899999999999877 5666678999999999999999998765 57999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 162 CLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 162 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
+|++|.+..+ ..++++++|++|++++|.+..+|. .++++++|++|++++|. +..++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 9999999877 347999999999999999997754 69999999999999998 88876 56789999999999876
Q ss_pred cccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChH
Q 001951 239 KWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVD 318 (992)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~ 318 (992)
. .+....+|+.|++++|.+..++...
T Consensus 205 ~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-------------------------------------- 230 (597)
T 3oja_B 205 S----------------TLAIPIAVEELDASHNSINVVRGPV-------------------------------------- 230 (597)
T ss_dssp S----------------EEECCTTCSEEECCSSCCCEEECSC--------------------------------------
T ss_pred c----------------cccCCchhheeeccCCccccccccc--------------------------------------
Confidence 4 3455668999999999876555432
Q ss_pred HHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceec
Q 001951 319 EVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICL 398 (992)
Q Consensus 319 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 398 (992)
.++|+.|+++++. +.+ .+.+ ..+++|++|++++|.-....+ ..+..+++|+.|+++++ .+..+.
T Consensus 231 -----~~~L~~L~L~~n~-l~~-~~~l--~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~l~- 294 (597)
T 3oja_B 231 -----NVELTILKLQHNN-LTD-TAWL--LNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNN-RLVALN- 294 (597)
T ss_dssp -----CSCCCEEECCSSC-CCC-CGGG--GGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTTS-CCCEEE-
T ss_pred -----CCCCCEEECCCCC-CCC-Chhh--ccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCCC-CCCCCC-
Confidence 2345666665532 222 2333 677788888888775322211 23456677888888773 444432
Q ss_pred CCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEeccccCchhhhcccccCCccCCCccceecCcccEEeecC
Q 001951 399 GQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKF 478 (992)
Q Consensus 399 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 478 (992)
.....+++|+.|++++| .+..+|. .+..+++|+.|++++|. +..++ ...+++|+.|++++
T Consensus 295 --~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--------------~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 295 --LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--------------LSTHHTLKNLTLSH 354 (597)
T ss_dssp --CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--------------CCTTCCCSEEECCS
T ss_pred --cccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC--------------hhhcCCCCEEEeeC
Confidence 22345788888888885 4666653 35778888888888864 33332 24577888888887
Q ss_pred CC
Q 001951 479 LP 480 (992)
Q Consensus 479 ~~ 480 (992)
++
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.2e-21 Score=224.28 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=224.6
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCC-CC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp 149 (992)
.+.+...+|. .+...+++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|+|++|.+..+|
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 19 HRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccC
Confidence 3444555553 567899999999999998864 33 7999999999999877 565566899999999999999999998
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCC
Q 001951 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (992)
. .|.++++|++|++++|.+..+ ..+.++++|++|++++|.+..+ |..+.++.+|++|++++|. +..+|...++++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 175 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL 175 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence 6 579999999999999998865 6799999999999999999876 5579999999999999998 899998778999
Q ss_pred CCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC-ccCCCcc-ccCCccEEEEEeCCccCccCCcC
Q 001951 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA-MILPKGL-FSKKLERYKIFIGDEWDWSGNYK 303 (992)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~ 303 (992)
++|++|++++|.+. ......+.++++|+.|+++++.. ..++... ...
T Consensus 176 ~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------------------- 224 (477)
T 2id5_A 176 HGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-------------------- 224 (477)
T ss_dssp TTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC--------------------
T ss_pred CCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccCc--------------------
Confidence 99999999999876 23445688899999999998763 3344332 222
Q ss_pred cceEEEeecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccc
Q 001951 304 NKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLE 383 (992)
Q Consensus 304 ~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~ 383 (992)
+|++|+++++ .+.. ++...+..+++|++|++++|. +..+.. ..+..+++|+
T Consensus 225 ----------------------~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~ 275 (477)
T 2id5_A 225 ----------------------NLTSLSITHC-NLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQ 275 (477)
T ss_dssp ----------------------CCSEEEEESS-CCCS-CCHHHHTTCTTCCEEECCSSC-CCEECT----TSCTTCTTCC
T ss_pred ----------------------cccEEECcCC-cccc-cCHHHhcCccccCeeECCCCc-CCccCh----hhccccccCC
Confidence 4444444442 2222 221123556667777776664 222211 1234566677
Q ss_pred eeeccccccccceecCCCCchhcCCccEEEEecCCCCccccchhhhcccCcccEEEecccc
Q 001951 384 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (992)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 444 (992)
+|++.++ .+..+. +.....+++|+.|+++++ +++.+++ ..+..+++|++|++++++
T Consensus 276 ~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 276 EIQLVGG-QLAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSEEC--TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred EEECCCC-ccceEC--HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 7777663 333331 223346788888888884 6777655 446778899999998854
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8.3e-21 Score=206.51 Aligned_cols=174 Identities=18% Similarity=0.295 Sum_probs=134.1
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
..+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|.. |.++++|++|++++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 357888888888888888766 6788888888888777 67654 57788888888888888888888888888888888
Q ss_pred cCCCC-CCc-cccc---------CcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEE
Q 001951 164 DRCAL-GDI-AIIG---------NLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLY 232 (992)
Q Consensus 164 ~~~~l-~~l-~~i~---------~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 232 (992)
++|.+ ..+ ..++ ++++|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 88763 333 3333 4888888888888888888888888888888888887 7778776 78888888888
Q ss_pred eecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 233 MGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
+++|.+. +..+..++++++|+.|++++|..
T Consensus 236 Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 236 LRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp CTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred CcCCcch-----------hhhHHHhcCCCCCCEEECCCCCc
Confidence 8887665 33455677778888888877653
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.7e-20 Score=205.43 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=105.1
Q ss_pred CccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEc
Q 001951 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (992)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L 185 (992)
+++.++++++.+. .+|..+ .++|++|++++|.+..++ .+|+++++|++|++++|.+..+ ..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5677777766655 566543 256777777777777664 4677777777777777777654 56777777777777
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
++|.+..+|..+. .+|++|++++|. +..+|.+.++++++|++|++++|.+... +..+..++.+ +|+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CCSC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-ccCE
Confidence 7777777776655 677777777776 7777766567777777777777765410 1234455555 6777
Q ss_pred EEeeccCCccCCCcc
Q 001951 266 LEIQICDAMILPKGL 280 (992)
Q Consensus 266 L~l~~~~~~~~~~~~ 280 (992)
|++++|.+..+|..+
T Consensus 177 L~l~~n~l~~l~~~~ 191 (332)
T 2ft3_A 177 LRISEAKLTGIPKDL 191 (332)
T ss_dssp CBCCSSBCSSCCSSS
T ss_pred EECcCCCCCccCccc
Confidence 777777766655543
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2e-20 Score=203.43 Aligned_cols=132 Identities=22% Similarity=0.363 Sum_probs=98.6
Q ss_pred CCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeec
Q 001951 131 GMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLS 209 (992)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~ 209 (992)
...++++|+++++.+..+|..++++++|++|++++|.+..+ ..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34678888888888888888888888888888888887765 66788888888888888888888888888888888888
Q ss_pred CCCCCCccCccccCC---------CCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCcc
Q 001951 210 GCSKLKVIPPNLLSG---------LSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (992)
Q Consensus 210 ~~~~l~~~p~~~i~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (992)
+|..+..+|.. ++. +++|++|++++|.+. ..+..++++++|++|++++|.+..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCc
Confidence 87767777765 443 677777777776553 234456666777777776665543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=9.4e-20 Score=199.33 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=85.0
Q ss_pred CccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEc
Q 001951 109 QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSL 185 (992)
Q Consensus 109 ~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L 185 (992)
+++.++++++.+. .+|..+ .+.|++|++++|.++.+|. .|+++++|++|++++|.+..+ ..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4455555554443 344332 1455666666666655543 455666666666666665543 45566666666666
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
++|.++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+... +.....++++++|+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLSY 175 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCCE
T ss_pred CCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcCE
Confidence 6666666665443 566666666665 5555554456666666666666554310 123345556666666
Q ss_pred EEeeccCCccCCC
Q 001951 266 LEIQICDAMILPK 278 (992)
Q Consensus 266 L~l~~~~~~~~~~ 278 (992)
|++++|.+..+|.
T Consensus 176 L~l~~n~l~~l~~ 188 (330)
T 1xku_A 176 IRIADTNITTIPQ 188 (330)
T ss_dssp EECCSSCCCSCCS
T ss_pred EECCCCccccCCc
Confidence 6666666555444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.1e-19 Score=196.50 Aligned_cols=148 Identities=21% Similarity=0.348 Sum_probs=82.5
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (992)
+++.++++++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 34555555555555554432 45666666666554 34444456666666666666666554 55566666666666666
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCc--cCccccCCCCCCCEEEeecCccc
Q 001951 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
|.+..+ ..+. ++|++|++++|.+..+|. .++++++|++|++++|. +.. +....++++++|++|++++|.+.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc
Confidence 665544 2222 566666666666665543 35666666666666655 432 22222555666666666665543
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=7.3e-21 Score=205.75 Aligned_cols=244 Identities=17% Similarity=0.185 Sum_probs=176.9
Q ss_pred CCCCEEEeecCCCc---ccCCCC-CCCCccEEEcCC-CCCCCCcChhhhcCCCCCcEEEeeCCcCc-cCCcccCCCCCCc
Q 001951 86 KNCPTIFLHDCKHW---EVPEGL-EYPQLEFFCMSP-RDHSIKIPNHVFAGMSNLRGLALSNMQFL-SLPSLFHLPLNLQ 159 (992)
Q Consensus 86 ~~~r~l~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~l~~Lr 159 (992)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+...+|.. |.++++|++|++++|.+. .+|..|+++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57888888888876 466655 688888888884 6666566654 678888888888888887 7788888888888
Q ss_pred EEEccCCCCC-Cc-ccccCcccCcEEEccCCCCC-CCChhhhCCC-CcCEEeecCCCCCC-ccCccccCCCCCCCEEEee
Q 001951 160 TLCLDRCALG-DI-AIIGNLKKLEILSLVDSNIE-QLPEEMAQLT-QLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMG 234 (992)
Q Consensus 160 ~L~L~~~~l~-~l-~~i~~L~~L~~L~L~~~~l~-~LP~~i~~L~-~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~ 234 (992)
+|++++|.+. .+ ..++++++|++|++++|.+. .+|..++++. +|++|++++|. +. .+|.. ++.+. |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECc
Confidence 8888888876 33 67888888888888888887 7888888887 88888888887 54 55655 67776 8888888
Q ss_pred cCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeeccc
Q 001951 235 NTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYT 314 (992)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~ 314 (992)
+|.+. +..+..++.+++|+.|++++|.+...+..+
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------- 240 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKV---------------------------------- 240 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------------
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcc----------------------------------
Confidence 88765 335667778888888888877654222111
Q ss_pred CChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccc
Q 001951 315 SNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHL 393 (992)
Q Consensus 315 ~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l 393 (992)
..+++|++|+++++. +....|. .+..+++|++|++++|.-...+ +....+++|+.|++.+.+.+
T Consensus 241 -------~~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~i------p~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 241 -------GLSKNLNGLDLRNNR-IYGTLPQ-GLTQLKFLHSLNVSFNNLCGEI------PQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -------CCCTTCCEEECCSSC-CEECCCG-GGGGCTTCCEEECCSSEEEEEC------CCSTTGGGSCGGGTCSSSEE
T ss_pred -------cccCCCCEEECcCCc-ccCcCCh-HHhcCcCCCEEECcCCcccccC------CCCccccccChHHhcCCCCc
Confidence 124677888887743 3333333 2378889999999988643333 23366888999999886644
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.9e-19 Score=196.95 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=186.8
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDR 165 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~ 165 (992)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4678888888888887655 368888888888766 56556678888888888888888866 66788888888888888
Q ss_pred CCCCCc-ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCc--cCccccCCCCCCCEEEeecCccccc
Q 001951 166 CALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWE 241 (992)
Q Consensus 166 ~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 241 (992)
|.+..+ ..+. ++|++|++++|.+..+|. .++++++|++|++++|. +.. ++...++.+ +|++|++++|.+.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~-- 185 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT-- 185 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS--
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC--
Confidence 888766 4443 788888888888888875 47888888888888887 542 333336666 8888888888765
Q ss_pred ccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHH
Q 001951 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVI 321 (992)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~ 321 (992)
..+..+. ++|+.|++++|.+..++... +
T Consensus 186 ----------~l~~~~~--~~L~~L~l~~n~i~~~~~~~----------------------------------------l 213 (332)
T 2ft3_A 186 ----------GIPKDLP--ETLNELHLDHNKIQAIELED----------------------------------------L 213 (332)
T ss_dssp ----------SCCSSSC--SSCSCCBCCSSCCCCCCTTS----------------------------------------S
T ss_pred ----------ccCcccc--CCCCEEECCCCcCCccCHHH----------------------------------------h
Confidence 1222222 57888888888776554321 0
Q ss_pred HhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCC
Q 001951 322 MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQL 401 (992)
Q Consensus 322 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 401 (992)
..+++|+.|+++++ .+....+. .+..+++|++|++++|. +..++ .....+++|++|++++ +.++.+....+
T Consensus 214 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~lp-----~~l~~l~~L~~L~l~~-N~l~~~~~~~~ 284 (332)
T 2ft3_A 214 LRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNNK-LSRVP-----AGLPDLKLLQVVYLHT-NNITKVGVNDF 284 (332)
T ss_dssp TTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSSC-CCBCC-----TTGGGCTTCCEEECCS-SCCCBCCTTSS
T ss_pred cCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCCc-CeecC-----hhhhcCccCCEEECCC-CCCCccChhHc
Confidence 11345556666552 23322221 12566677777777664 22221 1245566777777766 33444322211
Q ss_pred C----chhcCCccEEEEecCCCCc-cccchhhhcccCcccEEEecccc
Q 001951 402 R----AESFYKLKIIKVRNCDKLK-NIFSFSFVRGLPQLQTLNVINCK 444 (992)
Q Consensus 402 ~----~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c~ 444 (992)
. ...++.|+.|++.+++-.. .+++ ..+..+++|+.++++++.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 1 1125778889988865321 2333 457788899999988764
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=198.22 Aligned_cols=191 Identities=19% Similarity=0.253 Sum_probs=121.4
Q ss_pred EEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCC
Q 001951 91 IFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALG 169 (992)
Q Consensus 91 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~ 169 (992)
.+.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.++.+ |.+|+++++|++|++++|.+.
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4555566666665442 46777777776655 45555566777777777777776655 345677777777777777766
Q ss_pred Cc--ccccCcccCcEEEccCCCCCCCCh--hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccc
Q 001951 170 DI--AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 170 ~l--~~i~~L~~L~~L~L~~~~l~~LP~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
.+ ..++++++|++|++++|.+..+|. .++++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC------
Confidence 55 236667777777777777776665 56677777777777764466665444667777777777766654
Q ss_pred ccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCC
Q 001951 246 NVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 294 (992)
...+..++++++|++|++++|.+..++... ...+|+.+++..+.
T Consensus 188 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 -----SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 223455666667777777776665554433 35666666666444
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=4.6e-20 Score=199.50 Aligned_cols=249 Identities=14% Similarity=0.145 Sum_probs=195.6
Q ss_pred CCccEEEcCCCCCCC--CcChhhhcCCCCCcEEEeeC-CcCc-cCCcccCCCCCCcEEEccCCCCC-Cc-ccccCcccCc
Q 001951 108 PQLEFFCMSPRDHSI--KIPNHVFAGMSNLRGLALSN-MQFL-SLPSLFHLPLNLQTLCLDRCALG-DI-AIIGNLKKLE 181 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~l~~Lr~L~L~~~~l~-~l-~~i~~L~~L~ 181 (992)
.+++.|++++|.+.. .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.+. .+ ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999886 67754 78999999999995 7777 78999999999999999999987 33 7899999999
Q ss_pred EEEccCCCCC-CCChhhhCCCCcCEEeecCCCCCC-ccCccccCCCC-CCCEEEeecCcccccccccccCCCCCChhhhc
Q 001951 182 ILSLVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLS-RLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 258 (992)
Q Consensus 182 ~L~L~~~~l~-~LP~~i~~L~~L~~L~l~~~~~l~-~~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (992)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. ++++. +|++|++++|.+. +..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHHh
Confidence 9999999988 789999999999999999998 66 78877 88888 9999999999876 34566777
Q ss_pred CCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCc
Q 001951 259 LLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 338 (992)
Q Consensus 259 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 338 (992)
.++ |+.|++++|.+...... .+..+++|+.|+++++ .+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~----------------------------------------~~~~l~~L~~L~L~~N-~l 233 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASV----------------------------------------LFGSDKNTQKIHLAKN-SL 233 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGG----------------------------------------GCCTTSCCSEEECCSS-EE
T ss_pred CCc-ccEEECcCCcccCcCCH----------------------------------------HHhcCCCCCEEECCCC-ce
Confidence 777 99999999876533221 1123567788888773 33
Q ss_pred ccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCC
Q 001951 339 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 418 (992)
Q Consensus 339 ~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 418 (992)
....+.+ ..+++|++|++++|.-...++ ..+..+++|++|+++++. +... ....+.+++|+.+++.+.+
T Consensus 234 ~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N~-l~~~---ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDLGKV--GLSKNLNGLDLRNNRIYGTLP-----QGLTQLKFLHSLNVSFNN-LCGE---IPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBGGGC--CCCTTCCEEECCSSCCEECCC-----GGGGGCTTCCEEECCSSE-EEEE---CCCSTTGGGSCGGGTCSSS
T ss_pred eeecCcc--cccCCCCEEECcCCcccCcCC-----hHHhcCcCCCEEECcCCc-cccc---CCCCccccccChHHhcCCC
Confidence 4344444 678999999999997433322 345678999999999854 3321 1123678999999999877
Q ss_pred CCccc
Q 001951 419 KLKNI 423 (992)
Q Consensus 419 ~L~~l 423 (992)
.+...
T Consensus 303 ~lc~~ 307 (313)
T 1ogq_A 303 CLCGS 307 (313)
T ss_dssp EEEST
T ss_pred CccCC
Confidence 56553
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=6.1e-21 Score=227.40 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=71.2
Q ss_pred cCCCCCcEEEeeCCcCcc-CCcccCCC--CCCcEEEccCCC-CC--Cc-ccccCcccCcEEEccCCCCCC-----CChhh
Q 001951 130 AGMSNLRGLALSNMQFLS-LPSLFHLP--LNLQTLCLDRCA-LG--DI-AIIGNLKKLEILSLVDSNIEQ-----LPEEM 197 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~-lp~~i~~l--~~Lr~L~L~~~~-l~--~l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i 197 (992)
..+++|++|+|+++.+.. .+..+... .+|++|++++|. +. .+ ....++++|++|++++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 356677777777765542 22233332 347777777665 22 11 222356677777777765432 33344
Q ss_pred hCCCCcCEEeecCCCCCCccCc----cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeec
Q 001951 198 AQLTQLRLFDLSGCSKLKVIPP----NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQI 270 (992)
Q Consensus 198 ~~L~~L~~L~l~~~~~l~~~p~----~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (992)
..+++|++|++++|. +..+.. ..+.++++|++|++.+|.+. ..+..++++++|+.|+++.
T Consensus 189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence 566777777777665 432221 11345667777777766543 1345566667777777764
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.3e-19 Score=189.60 Aligned_cols=183 Identities=27% Similarity=0.441 Sum_probs=126.2
Q ss_pred ccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCc-CccC-CcccCCCCCC
Q 001951 83 DMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSL-PSLFHLPLNL 158 (992)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~l~~L 158 (992)
....++++|++++|.+..++.. + .+++|++|++++|.+. .+....|.++++|++|++++|. +..+ |..+..+++|
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3456777777777777766643 2 6777777777777665 4444556777777777777775 6666 5567777777
Q ss_pred cEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeec
Q 001951 159 QTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (992)
Q Consensus 159 r~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (992)
++|++++|.+..+ ..+.++++|++|++++|.+..+|.. ++++++|++|++++|. +..+|...++.+++|++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 7777777776654 4567777777777777777776643 6777777777777776 7777765567777777777777
Q ss_pred CcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
|.+. ...+..++++++|+.|++++|.+..++.
T Consensus 187 n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 187 NRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred Cccc-----------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 7665 2234566677777777777776655443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=201.75 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=133.3
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (992)
.+.++..+..+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566666677777776554 67888888888766 555566788888888888888888765 57888888888888888
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
.+..+ ..+..+++|++|++++|.+..+|. .+.++.+|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 87766 457888888888888888887765 57888888888888876677887766788888888888888765
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCccCC
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (992)
.+..+..+++|+.|++++|.+..++
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred ---------cccccCCCcccCEEECCCCccCccC
Confidence 2335777888888888888766553
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=4.6e-20 Score=219.78 Aligned_cols=335 Identities=14% Similarity=0.050 Sum_probs=199.9
Q ss_pred cccccceeeccccccccccccCcc--ccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccccccccccccccc
Q 001951 529 VFPNLETLELCAISTEKIWCNQLA--AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 606 (992)
Q Consensus 529 ~~~~L~~L~l~~~~l~~~~~~~~~--~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~ 606 (992)
.+++|++|+++++.+..+....++ ...+++|+.|++++| .+..+ + ..+..+++|++|+++++.........
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~---- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEK---- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTS----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH-H-HHHhhhhHHHhhcccccccccchHHH----
Confidence 466777777777765422111111 013678888888886 45554 4 45777888888888864422111100
Q ss_pred cccceeecCccCccccccCCccceecCCCcccCCCcccEEEEecCCcceeeccccccccccccCcccccccccceeeeee
Q 001951 607 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 686 (992)
Q Consensus 607 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (992)
......+++|+.|.++++. ...++... ..+++|++|++++|. ++..... ..-..
T Consensus 263 -~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~---------------------~~~~~ 316 (592)
T 3ogk_B 263 -YMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHC---------------------TLIQK 316 (592)
T ss_dssp -SSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHH---------------------HHHTT
T ss_pred -HHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHH---------------------HHHHh
Confidence 0111256778888777642 22222211 247889999999886 4321100 00035
Q ss_pred cCCceEEeecCccccccccccCCccccccccEEEeec----------CCCC--cccHHHHhhCCCCcEEEEEcceeEEEc
Q 001951 687 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN----------DESE--NFRIGFLERFHNLEKLELRWSSYKEIF 754 (992)
Q Consensus 687 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~----------c~~~--~~~~~~l~~l~~L~~L~i~c~~l~~~~ 754 (992)
+++|++|+++++-...... .....+++|++|++.+ |..+ .......+.+++|+.|+++|+.+.+..
T Consensus 317 ~~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLE--VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHH--HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred CcCCCEEeccCccCHHHHH--HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 7889999988432221110 0123578899999995 7666 222334567999999999887775421
Q ss_pred cChhhhhhhh-hccccceEecCC---cccccccccc-CC-CcccccccccEEEEeccCC-cc--cccCCccccCCcCEEE
Q 001951 755 SNEEIVEHAE-MLTQVKSLKLWE---LSDLMYIWKQ-DS-KLDSITENLESLEVWWCEN-LI--NLVPSSASFKNLTTLE 825 (992)
Q Consensus 755 ~~~~~~~~~~-~l~~L~~L~l~~---~~~L~~l~~~-~~-~~~~~l~~L~~L~i~~c~~-l~--~l~~~~~~~~~L~~L~ 825 (992)
. ..+. .+++|++|++.+ |+.++..+.. +. .....+++|++|++++|.+ +. .+......+++|++|+
T Consensus 395 ~-----~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 395 L-----ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp H-----HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred H-----HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 1 1233 488999999984 4455543211 00 1135689999999998875 21 1111223478999999
Q ss_pred EcCCCCCcccchhHhhhccCCccEEEEccCcchhhh-hccCccccccccccccccccccccCCccccccCCCccccCCCc
Q 001951 826 LWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEI-ISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSL 904 (992)
Q Consensus 826 i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~sL 904 (992)
+++|. +++...+..+..+++|++|+|++|+ +... +... ...+++|++|++.+|+ ++..........+|.|
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~------~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA------VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH------HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH------HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 99875 6654445677888999999999998 4321 1100 1147899999999997 6654433333456666
Q ss_pred cEEEEccc
Q 001951 905 EDLFVIEC 912 (992)
Q Consensus 905 ~~L~i~~C 912 (992)
....|...
T Consensus 541 ~~~~~~~~ 548 (592)
T 3ogk_B 541 NIELIPSR 548 (592)
T ss_dssp EEEEECCC
T ss_pred EEEEecCc
Confidence 66555543
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.4e-19 Score=201.56 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=136.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (992)
.+.++..+..+..+|..+. +++++|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4566777777777776553 68888888888776 455566788888888888888888665 67888888888888888
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
.+..+ ..++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 209 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc----
Confidence 88765 457888888888888888887765 57888888888888877688888777888888888888888765
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCccCC
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (992)
.+..+..+++|+.|++++|.+..++
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred ---------ccccccccccccEEECcCCcCcccC
Confidence 2345777888888888888765543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.2e-19 Score=194.10 Aligned_cols=173 Identities=24% Similarity=0.250 Sum_probs=89.4
Q ss_pred EEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC---CcccCCCCCCcEEEccCC
Q 001951 90 TIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 90 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l---p~~i~~l~~Lr~L~L~~~ 166 (992)
.++..++.+..+|..+. +++++|++++|.+. .++..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 34444444555554332 45555555555544 45555555555555555555555433 344445555555555555
Q ss_pred CCCCc-ccccCcccCcEEEccCCCCCCCCh--hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 167 ALGDI-AIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 167 ~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
.+..+ ..+.++++|++|++++|.+..+|. .+.++++|++|++++|. +..++...++.+++|++|++++|.+..
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc---
Confidence 55444 345555555566655555555542 45555555666655555 444433335555555666555554430
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCcc
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (992)
...+..++.+++|+.|++++|.+..
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCE
T ss_pred -------ccchhHHhhCcCCCEEECCCCCcCC
Confidence 0123344555555555555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=192.07 Aligned_cols=170 Identities=24% Similarity=0.317 Sum_probs=138.9
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (992)
.|+.....+++++.+. .+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.+..+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4566667888888776 7887653 589999999999998876 899999999999999999866 56999999999
Q ss_pred EEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCc-cccCCCCCCCEEEeecCc-ccccccccccCCCCCChhhhcC
Q 001951 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKL 259 (992)
Q Consensus 183 L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~ 259 (992)
|++++|.++.+|.. ++++++|++|++++|. +..+|. +.++++++|++|++++|. +. ......+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~~~ 172 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDFAG 172 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHccC
Confidence 99999999999876 8999999999999998 889987 558999999999999984 33 223457888
Q ss_pred CCCCCEEEeeccCCccC-CCcc-ccCCccEEEEE
Q 001951 260 LSHLTTLEIQICDAMIL-PKGL-FSKKLERYKIF 291 (992)
Q Consensus 260 l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~l~l~ 291 (992)
+++|++|++++|.+... +..+ .+++|+.+++.
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 99999999999987655 3333 33444444443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.7e-18 Score=183.36 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=150.9
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
+.++..++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..|+.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67788888888888655 479999999999887 57777789999999999999999977 7789999999999999997
Q ss_pred -CCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 168 -LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 168 -l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
+..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..+|...++++++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc----
Confidence 8765 6799999999999999999987 5678999999999999998 88888777899999999999999876
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCccC
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMIL 276 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (992)
......+.++++|+.|++++|.+..+
T Consensus 167 -------~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 -------SVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred -------ccCHHHhcCccccCEEECCCCccccc
Confidence 22334588899999999999987655
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=4.3e-20 Score=220.25 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred cccccceeeccccc--cccccccCccccccCCCcEEEEecCCCccccCchhhhhhhcCCCEEEEeccc
Q 001951 529 VFPNLETLELCAIS--TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 594 (992)
Q Consensus 529 ~~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~p~~~l~~l~~L~~L~i~~c~ 594 (992)
.+++|++|++++|. +.......+. ..+++|++|++++|..++.+ + ..+..+++|++|++.+|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l-~-~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKL-A-TLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHH-H-HHHHHCTTCSEEECSBCC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHH-H-HHHhcCCcceEccccccc
Confidence 46678888888775 2110000000 12577888888887777664 3 346677888888877664
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.5e-17 Score=194.51 Aligned_cols=255 Identities=20% Similarity=0.168 Sum_probs=181.7
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
+++.++++++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 57899999999998887665 89999999999876 6765 57889999999999999987 6789999999999
Q ss_pred CCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccc
Q 001951 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (992)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (992)
.+..++. .+.+|++|++++|.+..+|.. +++|++|++++|. +..+|.. +.+|+.|++++|.+.
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT------- 174 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS-------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCC-------
Confidence 9887755 678999999999999999864 4889999999997 8888753 467899999988875
Q ss_pred cCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcc
Q 001951 247 VGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKG 326 (992)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~ 326 (992)
..+ ..+++|+.|++++|.+..+|... ++
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~l~~~~--------------------------------------------~~ 202 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLASLPTLP--------------------------------------------SE 202 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSCCCCCC--------------------------------------------TT
T ss_pred -----CCc---ccCCCCcEEECCCCCCCCCCCcc--------------------------------------------ch
Confidence 111 45678999999988876655421 24
Q ss_pred cceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhc
Q 001951 327 IEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESF 406 (992)
Q Consensus 327 L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 406 (992)
|+.|++.++ .+.. ++ ..+++|++|++++|. ++.+ + ..+++|++|+++++ .++.+ +. .+
T Consensus 203 L~~L~L~~N-~l~~-l~----~~~~~L~~L~Ls~N~-L~~l------p--~~l~~L~~L~Ls~N-~L~~l-----p~-~~ 260 (622)
T 3g06_A 203 LYKLWAYNN-RLTS-LP----ALPSGLKELIVSGNR-LTSL------P--VLPSELKELMVSGN-RLTSL-----PM-LP 260 (622)
T ss_dssp CCEEECCSS-CCSS-CC----CCCTTCCEEECCSSC-CSCC------C--CCCTTCCEEECCSS-CCSCC-----CC-CC
T ss_pred hhEEECcCC-cccc-cC----CCCCCCCEEEccCCc-cCcC------C--CCCCcCcEEECCCC-CCCcC-----Cc-cc
Confidence 555555442 2222 22 124667777777664 2211 1 33466777777663 34433 11 45
Q ss_pred CCccEEEEecCCCCccccchhhhcccCcccEEEecccc
Q 001951 407 YKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCK 444 (992)
Q Consensus 407 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 444 (992)
++|+.|++++| +++.+|. .+..+++|+.|++++++
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 67777777764 5666653 36667777777777754
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.6e-20 Score=219.99 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=35.1
Q ss_pred cCCCCCcEEEeeCCcCcc-CCcccC-CCCCCcEEEccCCC-CCC--c-ccccCcccCcEEEccCCCCCC-----CChhhh
Q 001951 130 AGMSNLRGLALSNMQFLS-LPSLFH-LPLNLQTLCLDRCA-LGD--I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMA 198 (992)
Q Consensus 130 ~~l~~Lr~L~Ls~~~i~~-lp~~i~-~l~~Lr~L~L~~~~-l~~--l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i~ 198 (992)
..+++|++|+++++.+.. .+..+. .+++|++|++++|. +.. + ..+.++++|++|++++|.+.. ++....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 344555555555554431 122222 34455555555552 322 2 122245555555555554332 111222
Q ss_pred CCCCcCEEeecCC
Q 001951 199 QLTQLRLFDLSGC 211 (992)
Q Consensus 199 ~L~~L~~L~l~~~ 211 (992)
.+++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 182 TYTSLVSLNISCL 194 (594)
T ss_dssp TCCCCCEEECTTC
T ss_pred cCCcCcEEEeccc
Confidence 4445555555544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.2e-18 Score=193.40 Aligned_cols=231 Identities=22% Similarity=0.264 Sum_probs=185.7
Q ss_pred CCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-
Q 001951 74 DIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS- 150 (992)
Q Consensus 74 ~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~- 150 (992)
.....+| ..+..++++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|+|++|.++.+|.
T Consensus 64 ~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 64 RGLSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SCCSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCcCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChh
Confidence 3444444 35678999999999999887543 3 8999999999999887 5676778999999999999999998876
Q ss_pred ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCC
Q 001951 151 LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS 226 (992)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~ 226 (992)
.|..+++|++|++++|.+..+ ..+.++++|++|++++| .+..+|. .+.++.+|++|++++|. +..+|. +..++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~ 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLV 218 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCT
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccc
Confidence 589999999999999999876 57899999999999995 6778876 58999999999999998 899986 89999
Q ss_pred CCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcce
Q 001951 227 RLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKR 306 (992)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~ 306 (992)
+|++|++++|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 219 ~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------------------- 261 (452)
T 3zyi_A 219 GLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNA-------------------------- 261 (452)
T ss_dssp TCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTT--------------------------
T ss_pred cccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHH--------------------------
Confidence 9999999999886 345678999999999999999886654432
Q ss_pred EEEeecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCC
Q 001951 307 VLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 307 ~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
+..+++|+.|+|+++.-.. ++.-.+..+++|++|++++|+
T Consensus 262 --------------~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 --------------FDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --------------TTTCTTCCEEECCSSCCSC--CCTTSSTTCTTCCEEECCSSC
T ss_pred --------------hcCCCCCCEEECCCCcCCc--cChHHhccccCCCEEEccCCC
Confidence 1123455555555554432 121123677888999998886
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=5.6e-18 Score=193.01 Aligned_cols=232 Identities=21% Similarity=0.303 Sum_probs=187.7
Q ss_pred CCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc
Q 001951 73 NDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (992)
Q Consensus 73 ~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~ 150 (992)
+.....+| ..+...++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|+|++|.++.+|.
T Consensus 52 ~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 52 RKNLREVP-DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp SCCCSSCC-SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCCcCcCC-CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCH
Confidence 34444555 35678999999999999888743 3 8999999999999877 6777789999999999999999999876
Q ss_pred -ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCC
Q 001951 151 -LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 151 -~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (992)
.|..+++|++|++++|.+..+ ..+.++++|++|++++| .+..+|. .+.++.+|++|++++|. +..+|. +..+
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l 206 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPL 206 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTC
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCC
Confidence 699999999999999999876 57999999999999995 6777775 68999999999999998 999996 8999
Q ss_pred CCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcc
Q 001951 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNK 305 (992)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l 305 (992)
++|++|++++|.+. ...+..+.++++|+.|++++|.+..++...
T Consensus 207 ~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------- 250 (440)
T 3zyj_A 207 IKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA------------------------- 250 (440)
T ss_dssp SSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS-------------------------
T ss_pred cccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh-------------------------
Confidence 99999999999876 334678899999999999999887665433
Q ss_pred eEEEeecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCC
Q 001951 306 RVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 306 ~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
+..+++|+.|+|+++.-..- +.-.+..+++|+.|++++|+
T Consensus 251 ---------------~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 ---------------FDNLQSLVEINLAHNNLTLL--PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ---------------STTCTTCCEEECTTSCCCCC--CTTTTSSCTTCCEEECCSSC
T ss_pred ---------------hcCCCCCCEEECCCCCCCcc--ChhHhccccCCCEEEcCCCC
Confidence 11234556666655554432 22123678889999998886
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2e-17 Score=174.87 Aligned_cols=193 Identities=22% Similarity=0.326 Sum_probs=147.5
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcc-cCCCCCCcEEEccC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL-FHLPLNLQTLCLDR 165 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~l~~Lr~L~L~~ 165 (992)
..+.++++++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+|.. |..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45678888888887776554 67888888888776 56666678888888888888888887764 57788888888888
Q ss_pred CCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccc
Q 001951 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (992)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (992)
|.+..+ ..+.++++|++|++++|.+..+|. .++++++|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---
Confidence 888765 456788888888888888887764 46888888888888887 78888776788888888888888765
Q ss_pred cccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeC
Q 001951 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (992)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~ 293 (992)
......+.++++|+.|++++|.+..++... .+++|+.+++..+
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 223345777888888888888887777654 4567777766533
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=3.4e-20 Score=213.56 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=107.4
Q ss_pred CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc-----cCCcccCCCCCCcEEEccCCCCCC--cccc-cCcc-
Q 001951 108 PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL-----SLPSLFHLPLNLQTLCLDRCALGD--IAII-GNLK- 178 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~--l~~i-~~L~- 178 (992)
++|++|+++++.+.......+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777777776553333445778888999999988877 457778888889999998888764 2222 2344
Q ss_pred ---cCcEEEccCCCCC-----CCChhhhCCCCcCEEeecCCCCCCccC-----ccccCCCCCCCEEEeecCccccccccc
Q 001951 179 ---KLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCSKLKVIP-----PNLLSGLSRLEDLYMGNTSVKWEFEGL 245 (992)
Q Consensus 179 ---~L~~L~L~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~l~~~p-----~~~i~~L~~L~~L~l~~~~~~~~~~~~ 245 (992)
+|++|++++|.+. .+|..+.++++|++|++++|. +.... .......++|++|++++|.+...+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---
Confidence 6888888888877 457778888888888888887 54321 121223567888888888765111
Q ss_pred ccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 246 NVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
.......++.+++|++|++++|.+
T Consensus 159 ----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 ----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 012244566677888888877754
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.5e-17 Score=177.19 Aligned_cols=194 Identities=22% Similarity=0.230 Sum_probs=167.0
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
..+++.+++.++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 5678999999999999987764 78999999999886 56666789999999999999999988764 889999999999
Q ss_pred CCCCCCc-ccccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccc
Q 001951 165 RCALGDI-AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (992)
Q Consensus 165 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (992)
+|.+..+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 161 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT--- 161 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS---
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC---
Confidence 9999877 67889999999999999999987 468999999999999998 89999887889999999999999876
Q ss_pred cccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc-ccCCccEEEEEeC
Q 001951 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL-FSKKLERYKIFIG 293 (992)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~ 293 (992)
......+.++++|+.|++++|.+..+|..+ ...+|+.+.+..+
T Consensus 162 --------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 162 --------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred --------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 223345678999999999999999888877 5567777766543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.2e-19 Score=196.96 Aligned_cols=243 Identities=14% Similarity=0.087 Sum_probs=154.0
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (992)
.+++|++|++++|.+. .++...|.++++|++|++++|.+..++. +..+++|++|++++|.+..+ ...++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 4567888888888776 4555667888888888888888876654 78888888888888876543 23478888888
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhh-cCCCCCC
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL-KLLSHLT 264 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~ 264 (992)
++|.+..+|. ..+.+|++|++++|. +..++...++.+++|++|++++|.+. ...+..+ ..+++|+
T Consensus 107 ~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 107 ANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLE 172 (317)
T ss_dssp CSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCC
T ss_pred CCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhccCcCC
Confidence 8888877764 346778888888887 77776655777888888888887765 1223344 3677888
Q ss_pred EEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCccccccc
Q 001951 265 TLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYD 344 (992)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 344 (992)
.|++++|.+..++....+.+|+.+++..+.+ ..++..+..+++|+.|+++++ .+....+.
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------AFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCC-------------------CEECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcC-------------------CcchhhhcccCcccEEECcCC-cccchhhH
Confidence 8888888776665544455555555543332 111112234566666666663 33332222
Q ss_pred ccccccccccEEEeecCCCeeEEecCCCc-cccccccccceeecccccccc
Q 001951 345 LDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNLIHLE 394 (992)
Q Consensus 345 l~~~~l~~L~~L~l~~~~~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~~l~ 394 (992)
+ ..+++|++|++++|+... ... .....+++|+.|++.+++.++
T Consensus 233 ~--~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 233 L--RFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp C--CCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred h--hcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEECCCchhcc
Confidence 2 556677777776665220 000 123345556666665544443
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=8.2e-17 Score=170.09 Aligned_cols=189 Identities=23% Similarity=0.368 Sum_probs=162.5
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp 149 (992)
.+.....+| ..+...+++|++++|.+..++.. + .+++|++|++++|.+. .++..+|.++++|++|++++|.+..+|
T Consensus 24 ~~~~l~~ip-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 24 SSKKLTAIP-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp TTSCCSSCC-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred cCCCCCccC-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 344444444 24567899999999999988863 3 7999999999999887 788888999999999999999999887
Q ss_pred c-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCC
Q 001951 150 S-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 150 ~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L 225 (992)
. .+..+++|++|++++|.+..+ ..++++++|++|++++|.+..+|.. ++.+++|++|++++|. +..+|...+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 5 578999999999999999876 5689999999999999999999875 7999999999999998 889988778999
Q ss_pred CCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCc
Q 001951 226 SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (992)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (992)
++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 181 ~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 181 TELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCee
Confidence 99999999999876 223445788999999999998754
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=3.4e-17 Score=176.88 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=172.5
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCC--cChhhhcCCCCCcEEEeeCCcCcc
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIK--IPNHVFAGMSNLRGLALSNMQFLS 147 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~--~~~~~~~~l~~Lr~L~Ls~~~i~~ 147 (992)
.+.....+|. ....++++|++++|.+..++... .+++|++|++++|.+... .+.. +..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcccc
Confidence 3444445553 45679999999999999998754 899999999999987521 1333 5679999999999999999
Q ss_pred CCcccCCCCCCcEEEccCCCCCCc---ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCc--cCccc
Q 001951 148 LPSLFHLPLNLQTLCLDRCALGDI---AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKV--IPPNL 221 (992)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~--~p~~~ 221 (992)
+|..+..+++|++|++++|.+..+ ..+.++++|++|++++|.+... |..+..+++|++|++++|. +.. +|..
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~- 170 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI- 170 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-
Confidence 999999999999999999998755 4689999999999999998854 5678999999999999998 654 6665
Q ss_pred cCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCCc
Q 001951 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGDE 295 (992)
Q Consensus 222 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~~ 295 (992)
++.+++|++|++++|.+. ...+..+.++++|+.|++++|.+..++... .+++|+.+++..+.+
T Consensus 171 ~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred HhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 899999999999999876 334567889999999999999988777643 678899988876554
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=5.1e-17 Score=174.94 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=164.9
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
++++++|++.++.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 5689999999999988876558999999999999876 5555 789999999999999999886 69999999999999
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+|.+..++.+..+++|++|++++|.+..+|. ++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~----- 186 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS----- 186 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC-----
Confidence 9999988779999999999999999998886 9999999999999997 888877 899999999999999876
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCc
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDE 295 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 295 (992)
.+..+..+++|+.|++++|.+..++.-..+++|+.+++..+..
T Consensus 187 --------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 --------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp --------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred --------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2334889999999999999988777533778888888875543
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3e-17 Score=170.09 Aligned_cols=199 Identities=14% Similarity=0.204 Sum_probs=168.1
Q ss_pred cCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeC-CcCccCC-cc
Q 001951 76 QIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-SL 151 (992)
Q Consensus 76 ~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~ 151 (992)
...+|. +...+++|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 555565 677999999999999998873 3 7999999999999733378887899999999999998 9999887 47
Q ss_pred cCCCCCCcEEEccCCCCCCcccccCcccCc---EEEccCC-CCCCCChh-hhCCCCcC-EEeecCCCCCCccCccccCCC
Q 001951 152 FHLPLNLQTLCLDRCALGDIAIIGNLKKLE---ILSLVDS-NIEQLPEE-MAQLTQLR-LFDLSGCSKLKVIPPNLLSGL 225 (992)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~---~L~L~~~-~l~~LP~~-i~~L~~L~-~L~l~~~~~l~~~p~~~i~~L 225 (992)
|..+++|++|++++|.+..++.++.+.+|+ +|++++| .+..+|.. +.++.+|+ +|++++|. +..+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~- 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG- 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-
Confidence 899999999999999998886688888888 9999999 99998864 89999999 99999998 88999875444
Q ss_pred CCCCEEEeecCc-ccccccccccCCCCCChhhhcCC-CCCCEEEeeccCCccCCCccccCCccEEEE
Q 001951 226 SRLEDLYMGNTS-VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKI 290 (992)
Q Consensus 226 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 290 (992)
++|++|++++|. +. ......+.++ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 179 ~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 899999999994 65 2234567788 9999999999999888776 5677777765
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.4e-19 Score=206.50 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=84.7
Q ss_pred CCCCEEEeecCCCc-----ccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCC----CCcEEEeeCCcCc-----cCCc
Q 001951 86 KNCPTIFLHDCKHW-----EVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMS----NLRGLALSNMQFL-----SLPS 150 (992)
Q Consensus 86 ~~~r~l~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~----~Lr~L~Ls~~~i~-----~lp~ 150 (992)
+++++|++++|.+. .++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 35555666655544 122222 3455666666555543222223333344 4666666666555 2355
Q ss_pred ccCCCCCCcEEEccCCCCCCc--ccc-----cCcccCcEEEccCCCCCC-----CChhhhCCCCcCEEeecCCCCCCccC
Q 001951 151 LFHLPLNLQTLCLDRCALGDI--AII-----GNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIP 218 (992)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l--~~i-----~~L~~L~~L~L~~~~l~~-----LP~~i~~L~~L~~L~l~~~~~l~~~p 218 (992)
.+..+++|++|++++|.+... ..+ ....+|++|++++|.+.. ++..+..+++|++|++++|. +....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 186 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAG 186 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHH
Confidence 555556666666666554421 111 123456666666655542 34445555566666666554 33221
Q ss_pred ccccC-----CCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 219 PNLLS-----GLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 219 ~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
...+. ..++|++|++++|.+...+ ....+..+..+++|++|++++|.+
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTH-------HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHH-------HHHHHHHHHhCCCccEEeccCCcC
Confidence 11111 2345566666555543100 001233444555566666655543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=6.8e-17 Score=172.08 Aligned_cols=159 Identities=24% Similarity=0.304 Sum_probs=138.4
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCcccccCcccCcEEE
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILS 184 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 184 (992)
.+++++++++.++.+. .+|..++ +++++|++++|.+..+ |..|..+++|++|++++|.+..+...+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5678999999998877 6886653 6899999999999976 468999999999999999999886668999999999
Q ss_pred ccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCC
Q 001951 185 LVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLT 264 (992)
Q Consensus 185 L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 264 (992)
+++|.+..+|..+..+++|++|++++|. +..+|.+.++++++|++|++++|.+. ......+..+++|+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCCC
Confidence 9999999999999999999999999998 89998777899999999999999876 23345578899999
Q ss_pred EEEeeccCCccCCCcc
Q 001951 265 TLEIQICDAMILPKGL 280 (992)
Q Consensus 265 ~L~l~~~~~~~~~~~~ 280 (992)
.|++++|.+..++..+
T Consensus 152 ~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 152 KLSLANNNLTELPAGL 167 (290)
T ss_dssp EEECTTSCCSCCCTTT
T ss_pred EEECCCCcCCccCHHH
Confidence 9999999887776643
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=6.4e-17 Score=171.76 Aligned_cols=173 Identities=18% Similarity=0.313 Sum_probs=116.8
Q ss_pred cCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--
Q 001951 95 DCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI-- 171 (992)
Q Consensus 95 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l-- 171 (992)
+..+.++|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+..+
T Consensus 16 ~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 334555665442 56777888777765 4555557778888888888887776654 677788888888888877654
Q ss_pred ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCc--cCccccCCCCCCCEEEeecCcccccccccccC
Q 001951 172 AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVG 248 (992)
Q Consensus 172 ~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 248 (992)
..+.++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------- 164 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------- 164 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE-------
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC-------
Confidence 567778888888888887777655 57778888888888776 655 4554 77788888888887776511
Q ss_pred CCCCChhhhcCCCCCC-EEEeeccCCccCCCc
Q 001951 249 RSNASLQELKLLSHLT-TLEIQICDAMILPKG 279 (992)
Q Consensus 249 ~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 279 (992)
....+..+.+++.|. .|++++|.+..++..
T Consensus 165 -~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 165 -YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp -CGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred -CHHHhhhhhhccccceeeecCCCcccccCcc
Confidence 111233444444444 777777776655543
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.4e-18 Score=188.30 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=175.0
Q ss_pred ccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCC
Q 001951 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDS 188 (992)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~ 188 (992)
++..++..+.+. ..+..++..+++|++|++++|.++.++ ..|+.+++|++|++++|.+..+..++.+++|++|++++|
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 334444444433 445567788889999999999999876 589999999999999999987756999999999999999
Q ss_pred CCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEe
Q 001951 189 NIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (992)
Q Consensus 189 ~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (992)
.+..+| ...+|++|++++|. +..++.. .+++|++|++++|.+. ......++.+++|+.|++
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEEEEEC
T ss_pred cccccc----CCCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCC-----------CccchhhhccCCCCEEEC
Confidence 988776 34899999999998 8888753 4789999999999876 223446777889999999
Q ss_pred eccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCccccccccccc
Q 001951 269 QICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIE 348 (992)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 348 (992)
++|.+..++... +...+++|++|+++++ .+... +.. .
T Consensus 152 s~N~l~~~~~~~---------------------------------------~~~~l~~L~~L~L~~N-~l~~~-~~~--~ 188 (317)
T 3o53_A 152 KLNEIDTVNFAE---------------------------------------LAASSDTLEHLNLQYN-FIYDV-KGQ--V 188 (317)
T ss_dssp TTSCCCEEEGGG---------------------------------------GGGGTTTCCEEECTTS-CCCEE-ECC--C
T ss_pred CCCCCCcccHHH---------------------------------------HhhccCcCCEEECCCC-cCccc-ccc--c
Confidence 988765432211 1122456677777663 23332 222 3
Q ss_pred ccccccEEEeecCCCeeEEecCCCccccccccccceeeccccccccceecCCCCchhcCCccEEEEecCCCCc-cccchh
Q 001951 349 GFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK-NIFSFS 427 (992)
Q Consensus 349 ~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~ 427 (992)
.+++|++|++++|. +..++ .....+++|++|+++++ .++.+. .....+++|+.|++.+++ +. ...+ .
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~-----~~~~~l~~L~~L~L~~N-~l~~l~---~~~~~l~~L~~L~l~~N~-~~~~~~~-~ 256 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMG-----PEFQSAAGVTWISLRNN-KLVLIE---KALRFSQNLEHFDLRGNG-FHCGTLR-D 256 (317)
T ss_dssp CCTTCCEEECCSSC-CCEEC-----GGGGGGTTCSEEECTTS-CCCEEC---TTCCCCTTCCEEECTTCC-CBHHHHH-H
T ss_pred ccccCCEEECCCCc-CCcch-----hhhcccCcccEEECcCC-cccchh---hHhhcCCCCCEEEccCCC-ccCcCHH-H
Confidence 46777777777765 22221 22345566666666663 344331 112345666666666643 22 1111 3
Q ss_pred hhcccCcccEEEeccccCch
Q 001951 428 FVRGLPQLQTLNVINCKNMK 447 (992)
Q Consensus 428 ~~~~l~~L~~L~l~~c~~l~ 447 (992)
.+..+++|+.+++.++..++
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccceEEECCCchhcc
Confidence 35556666666665554443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7e-17 Score=171.45 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=165.8
Q ss_pred ccCCCCCEEEeecCCCcccCC-CC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCc
Q 001951 83 DMLKNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQ 159 (992)
Q Consensus 83 ~~~~~~r~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr 159 (992)
.+...+++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 456789999999999998876 33 7899999999999876 677777899999999999999999776 6799999999
Q ss_pred EEEccCCCCCCc--ccccCcccCcEEEccCCCCCC--CChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCC----EE
Q 001951 160 TLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE----DL 231 (992)
Q Consensus 160 ~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L 231 (992)
+|++++|.+..+ ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 999999998876 469999999999999999986 78999999999999999998 8888766577777777 89
Q ss_pred EeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCC
Q 001951 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (992)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 294 (992)
++++|.+.. .........+|+.|++++|.+..++..+ .+++|+.+++..+.
T Consensus 183 ~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 183 DLSLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ecCCCcccc------------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 999998761 1222233347999999999998888765 57788888776443
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.6e-16 Score=165.86 Aligned_cols=174 Identities=21% Similarity=0.307 Sum_probs=150.0
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDR 165 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~ 165 (992)
..++++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+..++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678888888988887765 78999999999887 5666678999999999999999997754 589999999999999
Q ss_pred CCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccc
Q 001951 166 CALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEF 242 (992)
Q Consensus 166 ~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 242 (992)
|.+..+ ..+..+++|++|++++|.+..+|.. +.++.+|++|++++|. +..+|.+.++.+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 998866 5678999999999999999999875 6899999999999998 89998866899999999999999876
Q ss_pred cccccCCCCCChhhhcCCCCCCEEEeeccCCc
Q 001951 243 EGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (992)
Q Consensus 243 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (992)
......+..+++|+.|++++|.+.
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 334456888999999999998764
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.4e-15 Score=177.87 Aligned_cols=250 Identities=18% Similarity=0.116 Sum_probs=186.3
Q ss_pred EeeCCCcCCCCccccCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC
Q 001951 70 MLRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP 149 (992)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp 149 (992)
.+.+......|. .+..++++|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|
T Consensus 46 ~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 46 NVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp ECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCC
T ss_pred EecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCC
Confidence 345555555543 445799999999999999888 6799999999999876 5775 6799999999999999998
Q ss_pred cccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCC
Q 001951 150 SLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE 229 (992)
Q Consensus 150 ~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~ 229 (992)
. .+.+|++|++++|.+..++. .+++|++|++++|.+..+|. .+.+|+.|++++|. +..+| ..+++|+
T Consensus 118 ~---~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~ 184 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQ 184 (622)
T ss_dssp C---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCC
T ss_pred C---CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCc
Confidence 7 67899999999999887744 25899999999999999985 35789999999998 88888 3468999
Q ss_pred EEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEE
Q 001951 230 DLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLK 309 (992)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~ 309 (992)
+|++++|.+. ..+. .+++|+.|++++|.+..++.. ..+|+.|++..+.+-.
T Consensus 185 ~L~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~------------ 235 (622)
T 3g06_A 185 ELSVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS------------ 235 (622)
T ss_dssp EEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC------------
T ss_pred EEECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc------------
Confidence 9999999875 1111 247899999999998887764 3778888876554421
Q ss_pred eecccCChHHHHHhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCccccccccccceeeccc
Q 001951 310 LKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHN 389 (992)
Q Consensus 310 l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~ 389 (992)
++ ..+++|+.|+++++ .+.. +|. .+++|++|++++|. ++.++ ..+..+++|+.|++.+
T Consensus 236 -------lp---~~l~~L~~L~Ls~N-~L~~-lp~----~~~~L~~L~Ls~N~-L~~lp-----~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 236 -------LP---VLPSELKELMVSGN-RLTS-LPM----LPSGLLSLSVYRNQ-LTRLP-----ESLIHLSSETTVNLEG 293 (622)
T ss_dssp -------CC---CCCTTCCEEECCSS-CCSC-CCC----CCTTCCEEECCSSC-CCSCC-----GGGGGSCTTCEEECCS
T ss_pred -------CC---CCCCcCcEEECCCC-CCCc-CCc----ccccCcEEeCCCCC-CCcCC-----HHHhhccccCEEEecC
Confidence 11 12456777777763 3332 222 45678888887774 33222 2345677778888777
Q ss_pred cc
Q 001951 390 LI 391 (992)
Q Consensus 390 ~~ 391 (992)
++
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.9e-17 Score=187.49 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=101.4
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEcc
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLV 186 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~ 186 (992)
+++|++|++++|.+. .+++..|.++++|++|+|++|.+...+. ++.+++|++|++++|.+..++ ..++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 346777777777666 3555556777777777777777765554 777777777777777655432 33677777777
Q ss_pred CCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhc-CCCCCCE
Q 001951 187 DSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-LLSHLTT 265 (992)
Q Consensus 187 ~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~ 265 (992)
+|.+..+|. ..+++|++|++++|. +..+++..++.+++|++|++++|.+. +..+..+. ++++|+.
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLEH 173 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCCE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCcccE
Confidence 777776654 345677777777776 66654444677777777777777665 22344444 5677777
Q ss_pred EEeeccCCccCCC
Q 001951 266 LEIQICDAMILPK 278 (992)
Q Consensus 266 L~l~~~~~~~~~~ 278 (992)
|++++|.+..++.
T Consensus 174 L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 174 LNLQYNFIYDVKG 186 (487)
T ss_dssp EECTTSCCCEEEC
T ss_pred EecCCCccccccc
Confidence 7777777655443
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=3.7e-17 Score=176.78 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=126.6
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCC-CCcChhhh------cCCCCCcEEEeeCCcCc-cCCccc--CCCC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHS-IKIPNHVF------AGMSNLRGLALSNMQFL-SLPSLF--HLPL 156 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~------~~l~~Lr~L~Ls~~~i~-~lp~~i--~~l~ 156 (992)
+++.+++.+|.+ .+|..+. ..|++|++++|.+. ..++..++ .++++|++|++++|.+. .+|..+ +.++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 456666666766 5565431 12788888877762 34554431 26888999999999887 678776 8889
Q ss_pred CCcEEEccCCCCCCc-ccccCc-----ccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCc--cCcc-ccCCCC
Q 001951 157 NLQTLCLDRCALGDI-AIIGNL-----KKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKV--IPPN-LLSGLS 226 (992)
Q Consensus 157 ~Lr~L~L~~~~l~~l-~~i~~L-----~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~--~p~~-~i~~L~ 226 (992)
+|++|++++|.+... ..++.+ ++|++|++++|.+..+| ..++++++|++|++++|..... +|.. .+++++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 999999999988755 556666 88999999999888776 6788899999999998872222 2333 127888
Q ss_pred CCCEEEeecCcccccccccccCCCCCCh-hhhcCCCCCCEEEeeccCCccCC
Q 001951 227 RLEDLYMGNTSVKWEFEGLNVGRSNASL-QELKLLSHLTTLEIQICDAMILP 277 (992)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 277 (992)
+|++|++++|.+... ...+ .-+.++++|+.|++++|.+...+
T Consensus 202 ~L~~L~L~~N~l~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 202 TLQVLALRNAGMETP---------SGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TCCEEECTTSCCCCH---------HHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCEEECCCCcCcch---------HHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 999999988876510 0111 23457788999999988876543
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=2.1e-17 Score=178.61 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCc--cCCcccC-------CCCCCcEEEccCCCCCC-c-ccc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFL--SLPSLFH-------LPLNLQTLCLDRCALGD-I-AII 174 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~--~lp~~i~-------~l~~Lr~L~L~~~~l~~-l-~~i 174 (992)
..++|+.|++.+|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.. + ..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 346788888988887 678766543 899999999886 4676665 79999999999999873 3 544
Q ss_pred --cCcccCcEEEccCCCCCCCChhhhCC-----CCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccccc
Q 001951 175 --GNLKKLEILSLVDSNIEQLPEEMAQL-----TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (992)
Q Consensus 175 --~~L~~L~~L~L~~~~l~~LP~~i~~L-----~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (992)
+.+++|++|++++|.+..+|..++.+ ++|++|++++|. +..++.+.++++++|++|++++|.+...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE------ 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc------
Confidence 89999999999999999889888887 999999999998 8888866699999999999999975410
Q ss_pred CCCCCChhhh--cCCCCCCEEEeeccCCc
Q 001951 248 GRSNASLQEL--KLLSHLTTLEIQICDAM 274 (992)
Q Consensus 248 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 274 (992)
...+..+ +++++|++|++++|.+.
T Consensus 189 ---~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 189 ---RGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ---HHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ---hHHHHHHHhccCCCCCEEECCCCcCc
Confidence 0013344 78899999999988754
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=7.6e-16 Score=162.77 Aligned_cols=176 Identities=23% Similarity=0.325 Sum_probs=149.4
Q ss_pred cCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEE
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLC 162 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~ 162 (992)
.+++++.+.+.++.+..++....+++|++|++++|.+. .++ .+.++++|++|++++|.++.+|. .++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 36789999999998888776668999999999999876 343 47899999999999999998765 478999999999
Q ss_pred ccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 163 LDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 163 L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+++|.+..+ ..++++++|++|++++|.+..+|.. ++++++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 999998876 4488999999999999999988765 6899999999999998 88888876789999999999999876
Q ss_pred ccccccccCCCCCChhhhcCCCCCCEEEeeccCCc
Q 001951 240 WEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (992)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (992)
+.....++++++|+.|++++|...
T Consensus 195 -----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 -----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 333455788999999999988653
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.6e-16 Score=167.44 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=161.5
Q ss_pred eCCCcCCCCccccCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcc
Q 001951 72 RNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL 151 (992)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~ 151 (992)
.+.....++....++++++|++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.++.+|.
T Consensus 49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG-
T ss_pred eCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh-
Confidence 44444445555568899999999999988887458999999999999876 454 37899999999999999999875
Q ss_pred cCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEE
Q 001951 152 FHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 231 (992)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L 231 (992)
+..+++|++|++++|.+..+..++.+++|++|++++|.+..+|. +.++++|++|++++|. +..++. +..+++|++|
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEE
Confidence 99999999999999999988779999999999999999999987 9999999999999998 888886 7999999999
Q ss_pred EeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 232 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
++++|.+. ....+..+++|+.|++++|.+...|.
T Consensus 201 ~L~~N~l~-------------~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 201 HLKNNQIS-------------DVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECTTSCCC-------------BCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EccCCccC-------------ccccccCCCCCCEEEccCCeeecCCe
Confidence 99999876 12258999999999999998766554
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3.9e-16 Score=166.38 Aligned_cols=172 Identities=24% Similarity=0.356 Sum_probs=150.4
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEcc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLD 164 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~ 164 (992)
+.+++++++.+|.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.+|. ++.+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 5689999999999988876558899999999999887 4554 7899999999999999998764 8999999999999
Q ss_pred CCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 165 RCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 165 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+|.+..++.++.+++|++|++++|.+..+ ..++++++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~----- 191 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS----- 191 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC-----
Confidence 99999888899999999999999999988 579999999999999998 888876 899999999999999876
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCccCC
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAMILP 277 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (992)
.+..+..+++|+.|++++|.+...+
T Consensus 192 --------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 --------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred --------CChhhccCCCCCEEECcCCcccCCc
Confidence 2346889999999999998765443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.4e-16 Score=165.06 Aligned_cols=209 Identities=17% Similarity=0.249 Sum_probs=161.3
Q ss_pred eecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCc-CccCCc-ccCCCCCCcEEEccC-CCCC
Q 001951 93 LHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ-FLSLPS-LFHLPLNLQTLCLDR-CALG 169 (992)
Q Consensus 93 l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~-i~~lp~-~i~~l~~Lr~L~L~~-~~l~ 169 (992)
+.+..+.++|. + .+++++|++++|.+. .++...|.++++|++|++++|. ++.+|. .|..+++|++|++++ |.++
T Consensus 18 v~c~~l~~ip~-~-~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 18 VTCKDIQRIPS-L-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp EEECSCSSCCC-C-CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred eEccCccccCC-C-CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 34445777887 3 458999999999877 6777778999999999999997 988875 789999999999998 8888
Q ss_pred Cc--ccccCcccCcEEEccCCCCCCCChhhhCCCCcC---EEeecCCCCCCccCccccCCCCCCC-EEEeecCccccccc
Q 001951 170 DI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLR---LFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGNTSVKWEFE 243 (992)
Q Consensus 170 ~l--~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~---~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~~~~~~~~~ 243 (992)
.+ ..+.++++|++|++++|.++.+|. ++.+.+|+ +|++++|..+..+|.+.++++++|+ +|++++|.+..
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--- 170 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--- 170 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE---
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc---
Confidence 66 578899999999999999999997 88888888 9999999339999987789999999 99999987751
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccC-CccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHH
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIM 322 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~ 322 (992)
.....+.. ++|+.|++++|. +..++... +.
T Consensus 171 --------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~----------------------------------------~~ 201 (239)
T 2xwt_C 171 --------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDA----------------------------------------FG 201 (239)
T ss_dssp --------ECTTTTTT-CEEEEEECTTCTTCCEECTTT----------------------------------------TT
T ss_pred --------cCHhhcCC-CCCCEEEcCCCCCcccCCHHH----------------------------------------hh
Confidence 11222333 689999999884 76665432 11
Q ss_pred hh-cccceeeccccCCcccccccccccccccccEEEeecCC
Q 001951 323 QL-KGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 323 ~l-~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
.+ ++|+.|++++ +.++. +|. ..+++|+.|++.++.
T Consensus 202 ~l~~~L~~L~l~~-N~l~~-l~~---~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 GVYSGPSLLDVSQ-TSVTA-LPS---KGLEHLKELIARNTW 237 (239)
T ss_dssp TCSBCCSEEECTT-CCCCC-CCC---TTCTTCSEEECTTC-
T ss_pred ccccCCcEEECCC-Ccccc-CCh---hHhccCceeeccCcc
Confidence 24 5677777766 34443 232 357888888887764
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=8.2e-16 Score=162.49 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=148.6
Q ss_pred CCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001951 105 LEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (992)
Q Consensus 105 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (992)
..+++|+.|++.++.+. .++. +..+++|++|++++|.+..++ .++.+++|++|++++|.+..+ ..++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 36789999999998865 4543 688999999999999999875 799999999999999999876 45899999999
Q ss_pred EEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCC
Q 001951 183 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 261 (992)
Q Consensus 183 L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 261 (992)
|++++|.+..+|.. ++++.+|++|++++|. +..+|...++++++|++|++++|.+. ......+++++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~ 181 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-----------SLPEGVFDKLT 181 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC-----------ccCHHHhcCCc
Confidence 99999999988765 7999999999999997 88998886799999999999999876 23345578999
Q ss_pred CCCEEEeeccCCccCCCcc--ccCCccEEEEEeC
Q 001951 262 HLTTLEIQICDAMILPKGL--FSKKLERYKIFIG 293 (992)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~ 293 (992)
+|+.|++++|.+..++... .+++|+.+++..+
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 9999999999988777654 6778888877544
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=3.7e-17 Score=187.73 Aligned_cols=234 Identities=15% Similarity=0.159 Sum_probs=178.0
Q ss_pred CCCCEEEeecCCCcccCC-CC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 86 KNCPTIFLHDCKHWEVPE-GL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
.++++|++++|.+..+++ .+ .+++|++|++++|.+....+ |..+++|++|++++|.+..+|.. ++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 379999999999988764 33 79999999999998864333 78999999999999999987743 89999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccC-CCCCCCEEEeecCccccc
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLS-GLSRLEDLYMGNTSVKWE 241 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~-~L~~L~~L~l~~~~~~~~ 241 (992)
++|.+..+.. ..+++|++|++++|.+..+ |..++++++|++|++++|. +..+++..+. .+++|++|++++|.+.
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~-- 182 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY-- 182 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC--
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccc--
Confidence 9999987732 3578999999999999977 5579999999999999998 7764433354 8999999999999876
Q ss_pred ccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHH
Q 001951 242 FEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVI 321 (992)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~ 321 (992)
.......+++|+.|++++|.+..++..+
T Consensus 183 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------------------------- 210 (487)
T 3oja_A 183 -----------DVKGQVVFAKLKTLDLSSNKLAFMGPEF----------------------------------------- 210 (487)
T ss_dssp -----------EEECCCCCTTCCEEECCSSCCCEECGGG-----------------------------------------
T ss_pred -----------cccccccCCCCCEEECCCCCCCCCCHhH-----------------------------------------
Confidence 1234456899999999999887665543
Q ss_pred HhhcccceeeccccCCcccccccccccccccccEEEeecCCCeeEEecCCCc-cccccccccceeecccc
Q 001951 322 MQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAW-VRYNAFLLLESLVLHNL 390 (992)
Q Consensus 322 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~-~~~~~~~~L~~L~l~~~ 390 (992)
..+++|+.|++++ +.+....+.+ ..+++|+.|++++|+... ... .....++.|+.+.+..+
T Consensus 211 ~~l~~L~~L~Ls~-N~l~~lp~~l--~~l~~L~~L~l~~N~l~c-----~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 211 QSAAGVTWISLRN-NKLVLIEKAL--RFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp GGGTTCSEEECTT-SCCCEECTTC--CCCTTCCEEECTTCCBCH-----HHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCccEEEecC-CcCcccchhh--ccCCCCCEEEcCCCCCcC-----cchHHHHHhCCCCcEEecccc
Confidence 2356777777777 3444433333 678899999998886320 011 22345667777776543
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.9e-15 Score=155.25 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=143.8
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCC-C-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEG-L-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL 148 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l 148 (992)
+.+.....+|. .+...+++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+
T Consensus 21 ~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 21 CQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp CTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred cCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCccccc
Confidence 34444445443 4567899999999999887764 3 7899999999999887 56667789999999999999999988
Q ss_pred Cc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCC
Q 001951 149 PS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSG 224 (992)
Q Consensus 149 p~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~ 224 (992)
|. .|..+++|++|++++|.+..+ ..++++++|++|++++|.+..+|. .++.+++|++|++++|. +..+|.+.+..
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 177 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR 177 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhC
Confidence 74 678999999999999999877 447899999999999999999987 68999999999999998 88998876899
Q ss_pred CCCCCEEEeecCccc
Q 001951 225 LSRLEDLYMGNTSVK 239 (992)
Q Consensus 225 L~~L~~L~l~~~~~~ 239 (992)
+++|++|++++|.+.
T Consensus 178 l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 178 LGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTCCEEECCSCCBC
T ss_pred CCCCCEEEeeCCcee
Confidence 999999999999875
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4.9e-15 Score=162.81 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=131.1
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcE-EEeeCCcCcc
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-LALSNMQFLS 147 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~Ls~~~i~~ 147 (992)
..+.+...+|. +++.++++|++++|+++.+++.. ++++|++|++++|.+...++..+|.++++++. +.+.+|++..
T Consensus 16 C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 16 CQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp EESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred ecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 34445555553 45667888888888888777643 67888888888887765677777777777654 5566677777
Q ss_pred C-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC-CCCCCCh-hhhCC-CCcCEEeecCCCCCCccCccc
Q 001951 148 L-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS-NIEQLPE-EMAQL-TQLRLFDLSGCSKLKVIPPNL 221 (992)
Q Consensus 148 l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~LP~-~i~~L-~~L~~L~l~~~~~l~~~p~~~ 221 (992)
+ |..|..+++|++|++++|.+..+ ..+....++.+|++.++ .+..+|. .+..+ ..+++|++++|. ++.+|.+
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~- 172 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS- 172 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-
Confidence 6 45677788888888888877755 34445666777777654 6777764 34444 357778888877 7777776
Q ss_pred cCCCCCCCEEEeec-CcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCc
Q 001951 222 LSGLSRLEDLYMGN-TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKG 279 (992)
Q Consensus 222 i~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (992)
+....+|++|++.+ |.+. ......++++++|+.|++++|.+..+|..
T Consensus 173 ~f~~~~L~~l~l~~~n~l~-----------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLE-----------ELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp SSTTEEEEEEECTTCTTCC-----------CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hccccchhHHhhccCCccc-----------CCCHHHhccCcccchhhcCCCCcCccChh
Confidence 45566777777764 3332 11223467777788888888777766654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=2e-15 Score=160.97 Aligned_cols=169 Identities=22% Similarity=0.266 Sum_probs=148.4
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSL 185 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 185 (992)
.+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++.++++++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 5789999999999876 4553 7889999999999999999887 9999999999999999999988999999999999
Q ss_pred cCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 186 VDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 186 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
++|.+..++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+. ....+..+++|+.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------------~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DIVPLAGLTKLQN 182 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------------CCGGGTTCTTCCE
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------------cchhhcCCCccCE
Confidence 999999985 79999999999999998 888853 899999999999999876 1223899999999
Q ss_pred EEeeccCCccCCCccccCCccEEEEEeCCc
Q 001951 266 LEIQICDAMILPKGLFSKKLERYKIFIGDE 295 (992)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 295 (992)
|++++|.+..++.-..+++|+.+++..+.+
T Consensus 183 L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 183 LYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred EECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 999999998876544778899998875543
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=5e-15 Score=151.69 Aligned_cols=149 Identities=26% Similarity=0.362 Sum_probs=129.4
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~ 166 (992)
.+.++.+++.+..+|..+. ++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777888888887664 88999999999887 4555668999999999999999998875 5789999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
.+..+ ..+..+++|++|++++|.+..+|..+.++.+|++|++++|. +..+|.+.+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99877 44789999999999999999999999999999999999997 88888777889999999999988765
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=169.19 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=98.7
Q ss_pred CCCCccEEEcCCCCCCCCcChhh--hcCCCCCcEEEeeCCcCc-cCCccc--CCCCCCcEEEccCCCCCCc------ccc
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHV--FAGMSNLRGLALSNMQFL-SLPSLF--HLPLNLQTLCLDRCALGDI------AII 174 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~--~~~l~~Lr~L~Ls~~~i~-~lp~~i--~~l~~Lr~L~L~~~~l~~l------~~i 174 (992)
....++.+.+.++.+.......+ +..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34456667666554321100000 123456888888888776 445565 7778888888888876642 234
Q ss_pred cCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCc---cCc-cccCCCCCCCEEEeecCcccccccccccCC
Q 001951 175 GNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKV---IPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGR 249 (992)
Q Consensus 175 ~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~---~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 249 (992)
..+++|++|++++|.+..+| ..++.+++|++|++++|. +.. ++. ..++.+++|++|++++|.+...
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------- 212 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETP-------- 212 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--------
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCch--------
Confidence 56778888888888777665 467778888888888876 432 222 1136777888888877766400
Q ss_pred CCCChh-hhcCCCCCCEEEeeccCCccC
Q 001951 250 SNASLQ-ELKLLSHLTTLEIQICDAMIL 276 (992)
Q Consensus 250 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 276 (992)
...+. -++++++|++|++++|.+...
T Consensus 213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 213 -TGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp -HHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred -HHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 00111 146677788888887776554
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=3e-15 Score=174.97 Aligned_cols=174 Identities=23% Similarity=0.334 Sum_probs=154.7
Q ss_pred cCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
.+..++.|++.+|.+..++....+++|+.|++++|.+. .++. |..+++|++|+|++|.+..+| .+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 46789999999999988886558999999999999887 4554 789999999999999999887 7999999999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccc
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFE 243 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 243 (992)
++|.+..++.+..+++|++|+|++|.+..+ ..++.+.+|++|++++|. +..+++ ++.+++|++|++++|.+.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~---- 188 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 188 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC----
Confidence 999999998899999999999999999988 579999999999999998 888876 899999999999999876
Q ss_pred ccccCCCCCChhhhcCCCCCCEEEeeccCCccCCC
Q 001951 244 GLNVGRSNASLQELKLLSHLTTLEIQICDAMILPK 278 (992)
Q Consensus 244 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (992)
.+..+..+++|+.|++++|.+...|.
T Consensus 189 ---------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ---------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ---------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ---------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23578999999999999998765544
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=5.7e-15 Score=150.17 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=114.2
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 167 (992)
+.++..++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|+|++|.+..+ |.+|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456677777777776554 67888888888776 56666678888888888888888866 6678888888888888888
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+..+ ..+.++++|++|++++|.+..+ |..+..+.+|++|++++|. +..++.+.+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8766 3467788888888888888876 4567888888888888887 77777766777888888888877654
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5.7e-15 Score=149.20 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=135.6
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (992)
+.+...++.+..+|..+ .++|++|++++|.+. .++..+|.++++|++|++++|.++.+|. .|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35666666777777654 468999999998877 6777778899999999999999998876 46889999999999999
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEG 244 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 244 (992)
+..+ ..++++++|++|++++|.+..+|.. +.++.+|++|++++|. +..+|...++++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 8876 4478999999999999999988765 7889999999999997 88888876788999999999988654
Q ss_pred cccCCCCCChhhhcCCCCCCEEEeeccCCc-cCCC
Q 001951 245 LNVGRSNASLQELKLLSHLTTLEIQICDAM-ILPK 278 (992)
Q Consensus 245 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~ 278 (992)
+.+++|+.|+++.+.+. .+|.
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred -------------cCCCCHHHHHHHHHhCCceeec
Confidence 23456777777776643 4444
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=8e-15 Score=149.06 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=118.0
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 167 (992)
+.++++++.+..+|..+ .+.++.|++++|.+....+..+|.++++|++|++++|.++.++. +|..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47888888888888655 35678888888887643355667888889999998888887765 78888888888888888
Q ss_pred CCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 168 LGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 168 l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+..+ ..++++++|++|++++|.+..+ |..+..+.+|++|++++|. +..++++.+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8766 4588888888888888888877 5678888888888888887 77775555788888888888887764
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.4e-15 Score=166.67 Aligned_cols=199 Identities=17% Similarity=0.220 Sum_probs=118.3
Q ss_pred ccEEEcCCCCCCCCcChhhhcCC--CCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCC--c-ccccCcccCcEEE
Q 001951 110 LEFFCMSPRDHSIKIPNHVFAGM--SNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--I-AIIGNLKKLEILS 184 (992)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~~~~l--~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l-~~i~~L~~L~~L~ 184 (992)
++.++++++.+. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. + ..+.++++|++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555554332 3344555 67777777777777665556677777777777777652 3 4566777777777
Q ss_pred ccCCCCC-CCChhhhCCCCcCEEeecCCCCCCc--cCccccCCCCCCCEEEeecC-cccccccccccCCCCCChhhhcCC
Q 001951 185 LVDSNIE-QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLSRLEDLYMGNT-SVKWEFEGLNVGRSNASLQELKLL 260 (992)
Q Consensus 185 L~~~~l~-~LP~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l 260 (992)
+++|.+. ..|..++++++|++|++++|..+.. ++.. ++++++|++|++++| .+.. ......++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l 193 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----------KHVQVAVAHV 193 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----------HHHHHHHHHS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhc
Confidence 7777666 4566677777777777777743553 4433 566777777777776 5430 0123445666
Q ss_pred C-CCCEEEeeccCCccCCCccccCCccEEEEEeCCccCccCCcCcceEEEeecccCChHHHHHhhcccceeeccccCCcc
Q 001951 261 S-HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIK 339 (992)
Q Consensus 261 ~-~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 339 (992)
+ +|++|++++|.... .+..++.....+++|++|+++++..++
T Consensus 194 ~~~L~~L~l~~~~~~~-------------------------------------~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 194 SETITQLNLSGYRKNL-------------------------------------QKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CTTCCEEECCSCGGGS-------------------------------------CHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred ccCCCEEEeCCCcccC-------------------------------------CHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 6 77777776653100 001223344556677777776655333
Q ss_pred c-ccccccccccccccEEEeecCC
Q 001951 340 N-VLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 340 ~-~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
+ .++.+ ..+++|++|++++|.
T Consensus 237 ~~~~~~l--~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 237 NDCFQEF--FQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGGGG--GGCTTCCEEECTTCT
T ss_pred HHHHHHH--hCCCCCCEeeCCCCC
Confidence 2 22222 566777777777664
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.4e-14 Score=159.29 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=77.0
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCC-c--ccccCcccCcE-EEc
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGD-I--AIIGNLKKLEI-LSL 185 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~-l--~~i~~L~~L~~-L~L 185 (992)
++++.+++.+. .+|.+++ +++++|+|++|.|+.+|. +|.++++|++|+|++|.+.. + ..|.++++|++ +++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666555 5665542 467777777777777765 57777777777777777532 3 45667766654 445
Q ss_pred cCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeec
Q 001951 186 VDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (992)
Q Consensus 186 ~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (992)
++|++..+| ..+..+++|++|++++|. +..+|........++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 556777664 456777777777777776 6666654344555566666654
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.3e-14 Score=144.85 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=109.3
Q ss_pred CCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCcc-CCcccCCCCCCcEEEc
Q 001951 85 LKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLFHLPLNLQTLCL 163 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~l~~Lr~L~L 163 (992)
+.+++++++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4578888888888877774347788888888877543 332 36778888888888888774 5677888888888888
Q ss_pred cCCCCCC--cccccCcccCcEEEccCCC-CCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 164 DRCALGD--IAIIGNLKKLEILSLVDSN-IEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 164 ~~~~l~~--l~~i~~L~~L~~L~L~~~~-l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
++|.+.. +..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 8888775 4677788888888888886 77776 67788888888888877 777763 677788888888777653
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=158.08 Aligned_cols=192 Identities=15% Similarity=0.062 Sum_probs=134.8
Q ss_pred CCCCEEEeecCCCcc-cCCC---CCCCCccEEEcCCCCCCCCcC---hhhhcCCCCCcEEEeeCCcCccCC-cccCCCCC
Q 001951 86 KNCPTIFLHDCKHWE-VPEG---LEYPQLEFFCMSPRDHSIKIP---NHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLN 157 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~ 157 (992)
.++++|++++|.+.. .|.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358888888887763 3333 357888888888887764333 223457888888888888887665 57888888
Q ss_pred CcEEEccCCCCCC---c---ccccCcccCcEEEccCCCCCCCChh----hhCCCCcCEEeecCCCCCCcc-CccccCCC-
Q 001951 158 LQTLCLDRCALGD---I---AIIGNLKKLEILSLVDSNIEQLPEE----MAQLTQLRLFDLSGCSKLKVI-PPNLLSGL- 225 (992)
Q Consensus 158 Lr~L~L~~~~l~~---l---~~i~~L~~L~~L~L~~~~l~~LP~~----i~~L~~L~~L~l~~~~~l~~~-p~~~i~~L- 225 (992)
|++|++++|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..+ |.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhcc
Confidence 8888888888652 2 2346788888888888888776653 5778888888888887 6665 655 5555
Q ss_pred --CCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeC
Q 001951 226 --SRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIG 293 (992)
Q Consensus 226 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 293 (992)
++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|....+++|+.+++..+
T Consensus 249 ~~~~L~~L~Ls~N~l~------------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE------------QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCC------------SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCC------------chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 58888888888775 1222332 678888888888776655445667777666443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=6.2e-15 Score=154.37 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=116.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCA 167 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~ 167 (992)
+..+.+..+.+.+++....+++|++|++++|.+. .++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3344445555555553335677777777777665 455 25777788888888887777766 7777888888888887
Q ss_pred CCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccccccccccc
Q 001951 168 LGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNV 247 (992)
Q Consensus 168 l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 247 (992)
++.++.+.. .+|++|++++|.+..+| .++++++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~-------- 163 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT-------- 163 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC--------
T ss_pred cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc--------
Confidence 777655555 77888888888777765 57778888888888777 777763 677788888888777765
Q ss_pred CCCCCChhhhcCCCCCCEEEeeccCCccC
Q 001951 248 GRSNASLQELKLLSHLTTLEIQICDAMIL 276 (992)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (992)
....+..+++|+.|++++|.+...
T Consensus 164 -----~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 -----NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred -----chHHhccCCCCCEEeCCCCcccCC
Confidence 115567777788888877765444
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=9.1e-15 Score=146.06 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=122.7
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCC--cccccCcccCcEE
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD--IAIIGNLKKLEIL 183 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~~L~~L~~L 183 (992)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5678999999988876 566 2688899999999999877665 68889999999999999885 5888899999999
Q ss_pred EccCCCCCC-CChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCC
Q 001951 184 SLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (992)
Q Consensus 184 ~L~~~~l~~-LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 262 (992)
++++|.+.. .|..++++++|++|++++|..+..+|. ++.+++|++|++++|.+. .+..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 999998884 677889999999999999865778874 888999999999988775 2337788889
Q ss_pred CCEEEeeccCCc
Q 001951 263 LTTLEIQICDAM 274 (992)
Q Consensus 263 L~~L~l~~~~~~ 274 (992)
|+.|++++|.+.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 999999888753
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=2e-14 Score=158.57 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=139.8
Q ss_pred CEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhc-CCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCC
Q 001951 89 PTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFA-GMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 89 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~ 166 (992)
+.++++++.+..+|..+. +.++.|++++|.+. .++...|. ++++|++|+|++|.+..+| ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888887653 56899999999876 57767777 8999999999999999876 46999999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCCCCCCccCcccc---CCCCCCCEEEeecCcccc
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLL---SGLSRLEDLYMGNTSVKW 240 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~~~l~~~p~~~i---~~L~~L~~L~l~~~~~~~ 240 (992)
.+..+ ..+.++.+|++|+|++|.+..+ |..+..+.+|++|++++|. +..+|...+ +.+++|++|++++|.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 98866 4688999999999999999877 5678999999999999998 889988755 67899999999998876
Q ss_pred cccccccCCCCCChhhhcCCCC--CCEEEeeccCC
Q 001951 241 EFEGLNVGRSNASLQELKLLSH--LTTLEIQICDA 273 (992)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 273 (992)
......+..++. ++.|++.+|..
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 334456777766 47788887754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=5.7e-14 Score=142.72 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=124.6
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 187 (992)
+.+++.++.+. .+|..+. ++|++|++++|.++.+|. .|..+++|++|+|++|.+..+ ..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57788877766 6776542 689999999999998875 789999999999999999865 7899999999999999
Q ss_pred CCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEE
Q 001951 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTL 266 (992)
Q Consensus 188 ~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 266 (992)
|.++.+|.+ +..+.+|++|++++|. +..++.+.++.+++|++|++++|.+. ......+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEE
Confidence 999999876 5889999999999998 88887666899999999999999876 2334567888999999
Q ss_pred EeeccCC
Q 001951 267 EIQICDA 273 (992)
Q Consensus 267 ~l~~~~~ 273 (992)
++++|..
T Consensus 158 ~L~~N~~ 164 (220)
T 2v9t_B 158 HLAQNPF 164 (220)
T ss_dssp ECCSSCE
T ss_pred EeCCCCc
Confidence 9998864
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.7e-14 Score=168.70 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=150.1
Q ss_pred CCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCcccccC
Q 001951 97 KHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDIAIIGN 176 (992)
Q Consensus 97 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~ 176 (992)
.+..+.....+++|+.|++.+|.+. .++. |..+++|++|+|++|.+..+|. +..+++|++|+|++|.+..++.++.
T Consensus 32 ~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~ 107 (605)
T 1m9s_A 32 SVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKD 107 (605)
T ss_dssp CTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTT
T ss_pred CcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhcc
Confidence 3333333336789999999999876 5553 7899999999999999999886 9999999999999999999999999
Q ss_pred cccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhh
Q 001951 177 LKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 256 (992)
Q Consensus 177 L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (992)
+++|++|+|++|.+..+| .+..+.+|++|++++|. +..++. ++.+++|++|++++|.+. .+..
T Consensus 108 l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~-------------~~~~ 170 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DIVP 170 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC-------------CCGG
T ss_pred CCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC-------------Cchh
Confidence 999999999999999886 69999999999999998 888853 899999999999999876 1223
Q ss_pred hcCCCCCCEEEeeccCCccCCCccccCCccEEEEEeCC
Q 001951 257 LKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGD 294 (992)
Q Consensus 257 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 294 (992)
+..+++|+.|++++|.+..++.-..+.+|+.|++..+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 89999999999999998877543477888888876443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.2e-13 Score=159.48 Aligned_cols=174 Identities=16% Similarity=0.202 Sum_probs=139.7
Q ss_pred CCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCC
Q 001951 87 NCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRC 166 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~ 166 (992)
+++.|++++|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7889999999888888766 478999999999887 677 346889999999999999988 666 8999999999
Q ss_pred CCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccc
Q 001951 167 ALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLN 246 (992)
Q Consensus 167 ~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 246 (992)
.++.++. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. ++ ++|++|++++|.+.
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~------- 193 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE------- 193 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-------
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-------
Confidence 9887755 78999999999999998886 67899999999998 888887 55 89999999998875
Q ss_pred cCCCCCChhhhcCCCCC-------CEEEeeccCCccCCCcc-ccCCccEEEEEeCC
Q 001951 247 VGRSNASLQELKLLSHL-------TTLEIQICDAMILPKGL-FSKKLERYKIFIGD 294 (992)
Q Consensus 247 ~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~ 294 (992)
..+. +.. +| +.|++++|.+..+|..+ .+++|+.+++..+.
T Consensus 194 -----~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 -----SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -----SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -----chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 1111 332 45 89999999988888766 66777777765443
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.8e-15 Score=169.22 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCCCccEEEcCCCCCCCCcCh---hhhcCCCCCcEEEeeCCcCcc----CCcc-------cCCCCCCcEEEccCCCCCC-
Q 001951 106 EYPQLEFFCMSPRDHSIKIPN---HVFAGMSNLRGLALSNMQFLS----LPSL-------FHLPLNLQTLCLDRCALGD- 170 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~Ls~~~i~~----lp~~-------i~~l~~Lr~L~L~~~~l~~- 170 (992)
.+++|++|++++|.+....+. ..|.++++|++|+|++|.+.. +|.. +..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 345566666655544321111 124455566666666553332 2322 2455666666666665553
Q ss_pred ----c-ccccCcccCcEEEccCCCCCC-----CChhhhCC---------CCcCEEeecCCCCCC--ccCc--cccCCCCC
Q 001951 171 ----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQL---------TQLRLFDLSGCSKLK--VIPP--NLLSGLSR 227 (992)
Q Consensus 171 ----l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i~~L---------~~L~~L~l~~~~~l~--~~p~--~~i~~L~~ 227 (992)
+ ..+.++++|++|++++|.+.. ++..+..+ ++|++|++++|. +. .+|. ..+..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCC
Confidence 2 345555666666666665541 22223333 566666666655 43 2221 11345556
Q ss_pred CCEEEeecCcccccccccccCCCCCChh-hhcCCCCCCEEEeeccCC
Q 001951 228 LEDLYMGNTSVKWEFEGLNVGRSNASLQ-ELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 273 (992)
|++|++++|.+...+. ..... .+.++++|+.|++++|.+
T Consensus 189 L~~L~L~~n~l~~~g~-------~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGI-------EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCEEECCSSCCCHHHH-------HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cCEEECcCCCCCHhHH-------HHHHHHHhhcCCCccEEECcCCCC
Confidence 6666666555431000 00112 455555666666665544
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=8.9e-14 Score=145.57 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=132.3
Q ss_pred cCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 84 MLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
.+.++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.++.+|... . .+|++|++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 46789999999999998885458999999999999887 5655 799999999999999999988643 3 99999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
++|.+..++.++++++|++|++++|.++.+| .++.+++|++|++++|. +..++. ++.+++|++|++++|.+.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 9999999988999999999999999999997 79999999999999998 888843 899999999999999876
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=7e-14 Score=141.14 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=132.5
Q ss_pred CcCCCCccccCCCCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-c
Q 001951 75 IQIEWPVADMLKNCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-L 151 (992)
Q Consensus 75 ~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~ 151 (992)
.....+ .....++++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|.++.+|. .
T Consensus 18 ~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 18 GRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 333444 345678999999999999888754 7999999999999887 6788888999999999999999998876 4
Q ss_pred cCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCC
Q 001951 152 FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL 228 (992)
Q Consensus 152 i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L 228 (992)
++.+++|++|++++|.+..+ ..+.++++|++|++++|.+..+|.. +.++.+|++|++++|. + .+.+++|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l 167 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGI 167 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTT
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCH
Confidence 78999999999999999876 4589999999999999999998875 7999999999999985 2 3566788
Q ss_pred CEEEeecCccc
Q 001951 229 EDLYMGNTSVK 239 (992)
Q Consensus 229 ~~L~l~~~~~~ 239 (992)
++|+++.|.+.
T Consensus 168 ~~L~~~~n~~~ 178 (208)
T 2o6s_A 168 RYLSEWINKHS 178 (208)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 99988888766
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.2e-13 Score=141.53 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=126.3
Q ss_pred ccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001951 110 LEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (992)
Q Consensus 110 Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 186 (992)
.+++++.++.+. .+|..+ .++|++|++++|.+..+ |..|..+++|++|+|++|.+..+ ..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456778777665 677654 37899999999999977 67899999999999999999877 457899999999999
Q ss_pred CCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 187 ~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
+|.++.+|.. +..+.+|++|++++|. +..+|.. +..+++|++|++++|.+. ......+..+++|+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLTH 163 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCCE
Confidence 9999999765 6899999999999998 8999988 799999999999999876 223356888999999
Q ss_pred EEeeccCCc
Q 001951 266 LEIQICDAM 274 (992)
Q Consensus 266 L~l~~~~~~ 274 (992)
|++++|...
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999988754
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=6.3e-14 Score=136.03 Aligned_cols=137 Identities=28% Similarity=0.264 Sum_probs=106.0
Q ss_pred CCCCCcEEEeeCCcCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCC-CChhhhCCCCcCEEe
Q 001951 131 GMSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFD 207 (992)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~-LP~~i~~L~~L~~L~ 207 (992)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3467888888888887 7887778888888888888887777778888888888888888886 777777788888888
Q ss_pred ecCCCCCCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCCh---hhhcCCCCCCEEEeeccCCccCCCc
Q 001951 208 LSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL---QELKLLSHLTTLEIQICDAMILPKG 279 (992)
Q Consensus 208 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~ 279 (992)
+++|. +..+|. ..++.+++|++|++++|.+. .... ..+..+++|+.|+++.|....+|.+
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88887 777762 23788888888888888765 1112 3677888888888888887666653
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=140.22 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=125.6
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC--cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP--SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 186 (992)
+++++++|.+. .+|..+ ...+++|++++|.++.++ ..|..+++|++|++++|.++.+ ..++++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58899888876 677654 345789999999999874 3589999999999999999876 479999999999999
Q ss_pred CCCCCCCChh-hhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCE
Q 001951 187 DSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTT 265 (992)
Q Consensus 187 ~~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 265 (992)
+|.+..+|.. ++.+.+|++|++++|. +..+++..++.+++|++|++++|.+. ...+..+..+++|+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCCE
Confidence 9999988764 8999999999999998 88886666899999999999999886 334677889999999
Q ss_pred EEeeccCC
Q 001951 266 LEIQICDA 273 (992)
Q Consensus 266 L~l~~~~~ 273 (992)
|++++|.+
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99998865
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=4.2e-15 Score=162.94 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=149.7
Q ss_pred CCCEEEeecCCCcccCCCC-CC--CCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCcc--CCcccCCCCCCcEE
Q 001951 87 NCPTIFLHDCKHWEVPEGL-EY--PQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS--LPSLFHLPLNLQTL 161 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~--lp~~i~~l~~Lr~L 161 (992)
..++++++++.+. +..+ .+ ++++.|++.+|.+....+. +.++++|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4667777776554 1111 23 7888888888877644433 3468889999999888763 77778888899999
Q ss_pred EccCCCCCC--cccccCcccCcEEEccCC-CCC--CCChhhhCCCCcCEEeecCCCCCCc--cCccccCCCC-CCCEEEe
Q 001951 162 CLDRCALGD--IAIIGNLKKLEILSLVDS-NIE--QLPEEMAQLTQLRLFDLSGCSKLKV--IPPNLLSGLS-RLEDLYM 233 (992)
Q Consensus 162 ~L~~~~l~~--l~~i~~L~~L~~L~L~~~-~l~--~LP~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~-~L~~L~l 233 (992)
++++|.+.. +..++++++|++|++++| .+. .+|..+.++++|++|++++|..+.. ++.. ++.++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEe
Confidence 999888763 267888889999999988 677 3677788888999999988833664 4443 67788 8999998
Q ss_pred ecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC-Cc-cCCCccccCCccEEEEEeCCccCccCCcCcceEEEee
Q 001951 234 GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD-AM-ILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLK 311 (992)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~ 311 (992)
++|..... ....+..++++++|+.|++++|. +. ..+.
T Consensus 203 ~~~~~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------------------- 241 (336)
T 2ast_B 203 SGYRKNLQ--------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------------------------------- 241 (336)
T ss_dssp CSCGGGSC--------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---------------------------------
T ss_pred CCCcccCC--------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---------------------------------
Confidence 88842100 01234456778889999998876 32 1111
Q ss_pred cccCChHHHHHhhcccceeeccccCCcccc-cccccccccccccEEEeecC
Q 001951 312 LYTSNVDEVIMQLKGIEELYLDEVPGIKNV-LYDLDIEGFLQLKHLHVQNN 361 (992)
Q Consensus 312 ~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~~l~~~~l~~L~~L~l~~~ 361 (992)
.+..+++|++|+++++....+. +.. +..+++|++|++++|
T Consensus 242 --------~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 --------EFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------GGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS
T ss_pred --------HHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEeccCc
Confidence 1123567777777776533321 112 266888888888877
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=6.6e-14 Score=154.44 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=141.9
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCCC---CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCcc
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGL---EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS 147 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~ 147 (992)
+.+.+...+|. .+...+++|++++|.+..++... .+++|++|++++|.+. .++...|.++++|++|+|++|.++.
T Consensus 25 c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 25 CSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE
T ss_pred eCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCc
Confidence 34445555553 56778999999999999888653 7899999999999887 6777779999999999999999998
Q ss_pred CCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChhh----hCCCCcCEEeecCCCCCCccCcc
Q 001951 148 LPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEEM----AQLTQLRLFDLSGCSKLKVIPPN 220 (992)
Q Consensus 148 lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~i----~~L~~L~~L~l~~~~~l~~~p~~ 220 (992)
+|. .|..+.+|++|+|++|.+..+ ..+.++++|++|+|++|.+..+|..+ ..+.+|++|++++|. +..+|..
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~ 181 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLT 181 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHH
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHH
Confidence 865 689999999999999999865 68999999999999999999999875 689999999999998 9999976
Q ss_pred ccCCCCC--CCEEEeecCccc
Q 001951 221 LLSGLSR--LEDLYMGNTSVK 239 (992)
Q Consensus 221 ~i~~L~~--L~~L~l~~~~~~ 239 (992)
.+..++. |+.|++.+|.+.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEE
T ss_pred HhhhccHhhcceEEecCCCcc
Confidence 6777877 488999998765
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=7e-13 Score=153.00 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=144.1
Q ss_pred eeCCCcCCCCccccCCCCCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc
Q 001951 71 LRNDIQIEWPVADMLKNCPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS 150 (992)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~ 150 (992)
+.+.....++. .+.+++++|++++|.+..+| -.+++|++|++++|.+.. +|. |.+ +|++|++++|.++.+|.
T Consensus 66 Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~lp~ 137 (571)
T 3cvr_A 66 LNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTMLPE 137 (571)
T ss_dssp CCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSCCCC
T ss_pred eCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCCCCC
Confidence 44555544443 34678999999999999988 447999999999998874 776 444 99999999999999997
Q ss_pred ccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCC--
Q 001951 151 LFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRL-- 228 (992)
Q Consensus 151 ~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L-- 228 (992)
.+++|++|++++|.++.++. .+++|++|++++|.++.+|. +. .+|++|++++|. +..+|. +.. +|
T Consensus 138 ---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~ 204 (571)
T 3cvr_A 138 ---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHH 204 (571)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-------
T ss_pred ---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhc
Confidence 68999999999999988755 68999999999999999998 76 999999999998 899997 454 77
Q ss_pred -----CEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCcc
Q 001951 229 -----EDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI 275 (992)
Q Consensus 229 -----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (992)
++|++++|.+. ..+..+.++++|+.|++++|.+..
T Consensus 205 ~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999886 356678889999999999998743
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=9.8e-15 Score=161.32 Aligned_cols=157 Identities=14% Similarity=0.144 Sum_probs=91.1
Q ss_pred CCccEEEcCCCCCCCCcCh----hhhcCCC-CCcEEEeeCCcCccC-CcccCCC-----CCCcEEEccCCCCCCc--cc-
Q 001951 108 PQLEFFCMSPRDHSIKIPN----HVFAGMS-NLRGLALSNMQFLSL-PSLFHLP-----LNLQTLCLDRCALGDI--AI- 173 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~~~~~~----~~~~~l~-~Lr~L~Ls~~~i~~l-p~~i~~l-----~~Lr~L~L~~~~l~~l--~~- 173 (992)
++|++|++++|.+. ..+. ..|.+++ +|++|+|++|.+... +..+..+ ++|++|++++|.+... ..
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 44777777777654 3443 4566676 777777777777644 3344443 7777777777776532 22
Q ss_pred ---ccCc-ccCcEEEccCCCCCCCCh-h----hhC-CCCcCEEeecCCCCCCc-----cCccccCCCC-CCCEEEeecCc
Q 001951 174 ---IGNL-KKLEILSLVDSNIEQLPE-E----MAQ-LTQLRLFDLSGCSKLKV-----IPPNLLSGLS-RLEDLYMGNTS 237 (992)
Q Consensus 174 ---i~~L-~~L~~L~L~~~~l~~LP~-~----i~~-L~~L~~L~l~~~~~l~~-----~p~~~i~~L~-~L~~L~l~~~~ 237 (992)
+..+ ++|++|++++|.+...+. . +.. .++|++|++++|. +.. ++.. +..+. +|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 3333 677777777777765543 2 233 2577777777776 542 2222 33444 77777777776
Q ss_pred ccccccccccCCCCCChhhhcCC-CCCCEEEeeccCCc
Q 001951 238 VKWEFEGLNVGRSNASLQELKLL-SHLTTLEIQICDAM 274 (992)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 274 (992)
+...+ .......+... ++|++|++++|.+.
T Consensus 179 l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 179 LASKN-------CAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GGGSC-------HHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred Cchhh-------HHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 65100 01111234444 47777777777654
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.9e-13 Score=129.63 Aligned_cols=125 Identities=29% Similarity=0.287 Sum_probs=93.9
Q ss_pred CCCCcEEEeeCCcCc--cCCcccCCCCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCC-CChhhhCCCCcCEEee
Q 001951 132 MSNLRGLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQ-LPEEMAQLTQLRLFDL 208 (992)
Q Consensus 132 l~~Lr~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~-LP~~i~~L~~L~~L~l 208 (992)
.++|++|++++|.+. .+|..++.+++|++|++++|.+..+..++++++|++|++++|.+.. +|..++++++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 466788888888877 7777778888888888888887777777888888888888888876 6777777888888888
Q ss_pred cCCCCCCccC--ccccCCCCCCCEEEeecCcccccccccccCCCCCCh---hhhcCCCCCCEEEee
Q 001951 209 SGCSKLKVIP--PNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL---QELKLLSHLTTLEIQ 269 (992)
Q Consensus 209 ~~~~~l~~~p--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 269 (992)
++|. +..+| .. ++.+++|++|++++|.+. .... ..++.+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHH-HhhCCCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccCC
Confidence 8887 77664 33 778888888888887765 1112 357777788877764
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.1e-14 Score=162.60 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=65.3
Q ss_pred eeCCcCccCCcccCCCCCCcEEEccCCCCCCc------ccccCcccCcEEEccCCCCC----CCChhh-------hCCCC
Q 001951 140 LSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI------AIIGNLKKLEILSLVDSNIE----QLPEEM-------AQLTQ 202 (992)
Q Consensus 140 Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l------~~i~~L~~L~~L~L~~~~l~----~LP~~i-------~~L~~ 202 (992)
++...+..++..+..+++|++|++++|.+... ..+.++++|++|++++|.+. .+|.++ .++++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 33334444555555555555555555554421 23445556666666555433 233333 56666
Q ss_pred cCEEeecCCCCCCc-----cCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCC---------CCCCEEEe
Q 001951 203 LRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL---------SHLTTLEI 268 (992)
Q Consensus 203 L~~L~l~~~~~l~~-----~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l 268 (992)
|++|++++|. +.. +|.. +.++++|++|++++|.+...+. ......+..+ ++|++|++
T Consensus 96 L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 96 LHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-------AKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-------HHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred ccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-------HHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 6666666665 443 3433 5666667777766665531100 0111223333 77888888
Q ss_pred eccCC
Q 001951 269 QICDA 273 (992)
Q Consensus 269 ~~~~~ 273 (992)
++|.+
T Consensus 167 ~~n~l 171 (386)
T 2ca6_A 167 GRNRL 171 (386)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 77764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.5e-15 Score=176.52 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=145.2
Q ss_pred CCCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCC-------------CCCCcChhhhcCCCCCcEEE-eeCCcCccCC
Q 001951 85 LKNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRD-------------HSIKIPNHVFAGMSNLRGLA-LSNMQFLSLP 149 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-Ls~~~i~~lp 149 (992)
.+.+++|+++.|.+..+|..+ .+++|+.|++.+|. .. ..++..+.++++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchhh
Confidence 346667777777777777766 67788888876553 22 23344567777777777 4544333222
Q ss_pred c------ccCC--CCCCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccc
Q 001951 150 S------LFHL--PLNLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNL 221 (992)
Q Consensus 150 ~------~i~~--l~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~ 221 (992)
. .+.. ...|++|++++|.++.++.++++++|++|++++|.++.+|..++++++|++|++++|. ++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1 1111 1259999999999998877999999999999999999999999999999999999998 88898 4
Q ss_pred cCCCCCCCEEEeecCcccccccccccCCCCCC-hhhhcCCCCCCEEEeeccCCccCCCcc-----ccCCccEEE
Q 001951 222 LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNAS-LQELKLLSHLTTLEIQICDAMILPKGL-----FSKKLERYK 289 (992)
Q Consensus 222 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l~ 289 (992)
++++++|++|++++|.+. +.. +..++++++|+.|++++|.+...+... .+++|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 899999999999999886 233 788999999999999999988777654 356666653
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2e-13 Score=150.77 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=115.9
Q ss_pred EEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-----cccCCCC-CCcEEEccCCCCCCc--ccccCc-----cc
Q 001951 113 FCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-----SLFHLPL-NLQTLCLDRCALGDI--AIIGNL-----KK 179 (992)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~l~~l--~~i~~L-----~~ 179 (992)
+.++.|.+...+| .++...++|++|++++|.+...+ ..+..++ +|++|++++|.+... ..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566676664444 45566677999999999999876 6788888 999999999998753 556665 99
Q ss_pred CcEEEccCCCCCCCCh-h----hhCC-CCcCEEeecCCCCCCccCccc----cCC-CCCCCEEEeecCcccccccccccC
Q 001951 180 LEILSLVDSNIEQLPE-E----MAQL-TQLRLFDLSGCSKLKVIPPNL----LSG-LSRLEDLYMGNTSVKWEFEGLNVG 248 (992)
Q Consensus 180 L~~L~L~~~~l~~LP~-~----i~~L-~~L~~L~l~~~~~l~~~p~~~----i~~-L~~L~~L~l~~~~~~~~~~~~~~~ 248 (992)
|++|++++|.+...+. . +..+ ++|++|++++|. +...+... +.. .++|++|++++|.+...+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~------ 154 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS------ 154 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH------
Confidence 9999999999986543 3 5555 899999999998 77776533 333 369999999999876111
Q ss_pred CCCCChhhhcCCC-CCCEEEeeccCCccC
Q 001951 249 RSNASLQELKLLS-HLTTLEIQICDAMIL 276 (992)
Q Consensus 249 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 276 (992)
.......+..++ +|++|++++|.+...
T Consensus 155 -~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 155 -SDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp -HHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred -HHHHHHHHhcCCccccEeeecCCCCchh
Confidence 112334456665 899999999987543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.1e-13 Score=129.60 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCccEEEcCCCCCC-CCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCC-c-ccccCcccCcEEE
Q 001951 108 PQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILS 184 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~ 184 (992)
++|++|++++|.+. ..+|.. |..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44444555444443 233322 34555555555555555554 445555555555555555554 3 3333455555555
Q ss_pred ccCCCCCCCC--hhhhCCCCcCEEeecCCCCCCccCc---cccCCCCCCCEEEeecCcc
Q 001951 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP---NLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 185 L~~~~l~~LP--~~i~~L~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~~~~~ 238 (992)
+++|.+..+| ..++.+++|++|++++|. +..+|. ..+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555555554 455555555555555554 555544 2255555555555555543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=129.31 Aligned_cols=124 Identities=22% Similarity=0.334 Sum_probs=93.5
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCC
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDS 188 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~ 188 (992)
++++++++.+. .+|..++ ++|++|++++|.++.+|..|..+++|++|++++|.++.+ ..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555544 4554432 467888888888888887888888888888888887766 45788888888888888
Q ss_pred CCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 189 NIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 189 ~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
.+..+|. .+..+.+|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8887764 57888888888888887 88888776778888888888887654
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=2.8e-13 Score=128.45 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCccEEEcCCCCCC-CCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCC-c-ccccCcccCcEEE
Q 001951 108 PQLEFFCMSPRDHS-IKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGD-I-AIIGNLKKLEILS 184 (992)
Q Consensus 108 ~~Lr~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~ 184 (992)
++++.|++++|.+. ..+|. .|..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555544 33443 345666666666666666655 456666666666666666654 3 3444566666666
Q ss_pred ccCCCCCCCC--hhhhCCCCcCEEeecCCCCCCccCc---cccCCCCCCCEEEee
Q 001951 185 LVDSNIEQLP--EEMAQLTQLRLFDLSGCSKLKVIPP---NLLSGLSRLEDLYMG 234 (992)
Q Consensus 185 L~~~~l~~LP--~~i~~L~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~ 234 (992)
+++|.+..+| ..++.+++|++|++++|. +..+|. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 6666666654 566666666666666665 555554 335666666666543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=6.1e-13 Score=159.81 Aligned_cols=150 Identities=22% Similarity=0.275 Sum_probs=99.1
Q ss_pred CCCCEEEeecCCCcccCCCC-CCCCccEEEc-----CCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCc
Q 001951 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCM-----SPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQ 159 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l-----~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr 159 (992)
.+++++++..+.+...+... ...+|+.+.+ ..|.+ .++...|..++.|++|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45788888888776655433 3333444333 22322 2556678899999999999999999999888999999
Q ss_pred EEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcc
Q 001951 160 TLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 238 (992)
Q Consensus 160 ~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 238 (992)
+|+|++|.+..+ ..|++|++|++|+|++|.++.+|.+|++|.+|++|+|++|. ++.+|.+ ++++++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 999999998876 77999999999999999999999999999999999999997 8899988 89999999999999987
Q ss_pred c
Q 001951 239 K 239 (992)
Q Consensus 239 ~ 239 (992)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 6
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=2.4e-12 Score=127.61 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=62.8
Q ss_pred cEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-c--cccCcccCcEEEccCCCCCCC-ChhhhCCCCcCEEeecCC
Q 001951 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-A--IIGNLKKLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGC 211 (992)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~--~i~~L~~L~~L~L~~~~l~~L-P~~i~~L~~L~~L~l~~~ 211 (992)
++++++++.++.+|..+.. +|++|++++|.+..+ . .++++++|++|++++|.++.+ |..++++.+|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555555555544332 555555555555443 1 145555555555555555544 444555555555555555
Q ss_pred CCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccC
Q 001951 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD 272 (992)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (992)
. +..++...++.+++|++|++++|.+. ...+..+..+++|+.|++++|.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCC
Confidence 5 55554444555555555555555543 1223344555555555555554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.2e-13 Score=129.51 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=78.6
Q ss_pred hcCCCCCcEEEeeCCcCccCCcccCCCC-CCcEEEccCCCCCCcccccCcccCcEEEccCCCCCCCChhh-hCCCCcCEE
Q 001951 129 FAGMSNLRGLALSNMQFLSLPSLFHLPL-NLQTLCLDRCALGDIAIIGNLKKLEILSLVDSNIEQLPEEM-AQLTQLRLF 206 (992)
Q Consensus 129 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~-~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~~i-~~L~~L~~L 206 (992)
|.++.+|++|++++|.++.+|. +..+. +|++|++++|.+..+..++++++|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3455566666666666665543 33333 66666666666665566666666666666666666666444 666666666
Q ss_pred eecCCCCCCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
++++|. +..+|. ..++.+++|++|++++|.+.. ........++.+++|+.|+++.+..
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~--------~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN--------KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG--------STTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC--------cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666665 566654 125666666666666665540 0000011356666677776666543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.5e-12 Score=127.53 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=76.1
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcc--cCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEcc
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSL--FHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLV 186 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 186 (992)
++++++++.+. .+|..++ .+|++|++++|.+..+|.. ++.+++|++|++++|.++.+ ..++++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 44455554443 4444332 2566666666666655542 66666666666666666644 456666667777777
Q ss_pred CCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 187 DSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 187 ~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+|.+..+|. .+..+++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776665544 36677777777777776 66554444677777777777777654
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=4.9e-13 Score=130.69 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=104.8
Q ss_pred CCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-cc-ccCcccCc
Q 001951 104 GLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AI-IGNLKKLE 181 (992)
Q Consensus 104 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~-i~~L~~L~ 181 (992)
..++.+|+.|++++|.+. .++. +....++|++|++++|.++.+ ..++.+++|++|++++|.+..+ +. ++.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 346778888888888776 4543 333334899999999988887 5788889999999999988866 33 48889999
Q ss_pred EEEccCCCCCCCCh--hhhCCCCcCEEeecCCCCCCccCcc---ccCCCCCCCEEEeecCccc
Q 001951 182 ILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPPN---LLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 182 ~L~L~~~~l~~LP~--~i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~~~ 239 (992)
+|++++|.+..+|. .++.+++|++|++++|. +..+|.. +++.+++|++|++++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999988887 78889999999999987 7777764 4678899999998887654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=9.4e-12 Score=123.21 Aligned_cols=124 Identities=25% Similarity=0.307 Sum_probs=109.3
Q ss_pred cEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCC
Q 001951 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSK 213 (992)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~ 213 (992)
++++++++.++.+|..+. .+|++|++++|.+..+ ..+.++++|++|++++|.++.++. .|..+.+|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998764 6899999999999877 789999999999999999998875 69999999999999998
Q ss_pred CCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 214 LKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 214 l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
+..++.+.++.+++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-----------VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-----------eeChhhhhcCccccEEEeCCCCe
Confidence 99998877999999999999999876 22334578899999999998864
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.6e-11 Score=118.57 Aligned_cols=106 Identities=26% Similarity=0.471 Sum_probs=65.7
Q ss_pred CCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEee
Q 001951 133 SNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDL 208 (992)
Q Consensus 133 ~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l 208 (992)
++|++|++++|.++.+|. .++.+++|++|++++|.+..+ ..++.+++|++|++++|.++.+|.. ++++.+|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 455666666666655543 345566666666666665544 2356666666666666666666543 466777777777
Q ss_pred cCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 209 SGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 209 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7765 66666664566777777777666553
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.7e-11 Score=118.45 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=107.9
Q ss_pred CCEEEeecCCCcccCCCCCCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCC
Q 001951 88 CPTIFLHDCKHWEVPEGLEYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRC 166 (992)
Q Consensus 88 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~ 166 (992)
.+.+++.++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.++.+|. .++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357788888888888654 379999999999887 6777778999999999999999998876 4789999999999999
Q ss_pred CCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCC
Q 001951 167 ALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (992)
Q Consensus 167 ~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~ 212 (992)
.++.+ ..++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99876 4578999999999999999999876 5889999999999997
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.6e-11 Score=142.70 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=94.8
Q ss_pred CCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEEeecCCC
Q 001951 134 NLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 134 ~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~ 212 (992)
.|++|++++|.++.+|. |+.+++|++|+|++|.+..+ ..++++++|++|++++|.++.+| +++++++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 48888888888888886 88888888888888888766 77888888888888888888888 78888888888888887
Q ss_pred CCCcc--CccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEe
Q 001951 213 KLKVI--PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEI 268 (992)
Q Consensus 213 ~l~~~--p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 268 (992)
+..+ |.. ++.+++|++|++++|.+.. .......-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~--------~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ--------EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGG--------SSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCC--------CccHHHHHHHHCcccCccCC
Confidence 7777 555 7888888888888887751 11122223445778887764
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.2e-13 Score=137.94 Aligned_cols=136 Identities=23% Similarity=0.306 Sum_probs=99.4
Q ss_pred hhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccCcEEEccCCCCCCCChhhhCCCCcCEE
Q 001951 128 VFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKLEILSLVDSNIEQLPEEMAQLTQLRLF 206 (992)
Q Consensus 128 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~LP~~i~~L~~L~~L 206 (992)
.|..+++|++|++++|.+..+| .++.+++|++|++++|.+..+ ..++.+++|++|++++|.+..+| .++++++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4688888888888888888888 788888888888888887766 55666788889999888888887 68888888999
Q ss_pred eecCCCCCCccCc-cccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEE
Q 001951 207 DLSGCSKLKVIPP-NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLE 267 (992)
Q Consensus 207 ~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 267 (992)
++++|. +..++. ..++.+++|++|++++|.+...... ...........+..+++|+.|+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE-NNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT-TTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccccccc-ccchHHHHHHHHHhCCCcEEEC
Confidence 988887 777654 2378888899998888876411000 0000001122367788888876
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.7e-11 Score=147.22 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=99.0
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcE-----EEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc-ccccCcccC
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRG-----LALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI-AIIGNLKKL 180 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~-----L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l-~~i~~L~~L 180 (992)
.+.++.|.+.++.... .+...+ ....|+. ++++.+.+...|..+..+.+|++|+|++|.+..+ ..++++.+|
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCc-chhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 3567888887776552 333322 2222333 3333444555677899999999999999999877 778899999
Q ss_pred cEEEccCCCCCCCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCC
Q 001951 181 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 260 (992)
Q Consensus 181 ~~L~L~~~~l~~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 260 (992)
++|+|++|.+..+|..|++|.+|++|+|++|. +..+|.. +++|++|++|++++|.+. ..+..++++
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~------------~lp~~~~~l 315 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT------------TLPWEFGNL 315 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC------------CCCSSTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC------------ccChhhhcC
Confidence 99999999999999999999999999999998 8899988 899999999999999875 345679999
Q ss_pred CCCCEEEeeccCCc
Q 001951 261 SHLTTLEIQICDAM 274 (992)
Q Consensus 261 ~~L~~L~l~~~~~~ 274 (992)
++|+.|++++|.+.
T Consensus 316 ~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 316 CNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCCCEECTTSCCC
T ss_pred CCccEEeCCCCccC
Confidence 99999999999875
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=1.1e-10 Score=113.33 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=80.1
Q ss_pred cEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCCC
Q 001951 136 RGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGCS 212 (992)
Q Consensus 136 r~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~~ 212 (992)
++++++++.+..+|..+. .+|++|++++|.+..+ ..++++++|++|+|++|.++.+|.. +.++.+|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887664 7888888888887765 5678888888888888888888765 4788888888888887
Q ss_pred CCCccCccccCCCCCCCEEEeecCccc
Q 001951 213 KLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 213 ~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
+..+|.+.++.+++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 78888766788888888888887664
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.2e-10 Score=112.58 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=83.0
Q ss_pred CcEEEeeCCcCccCCcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCChh-hhCCCCcCEEeecCC
Q 001951 135 LRGLALSNMQFLSLPSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPEE-MAQLTQLRLFDLSGC 211 (992)
Q Consensus 135 Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~~-i~~L~~L~~L~l~~~ 211 (992)
.++++++++.++.+|..+. .+|++|++++|.++.+ ..++++++|++|++++|.++.+|.+ +.++.+|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 7888888888888765 5688888888888888888888765 578888888888888
Q ss_pred CCCCccCccccCCCCCCCEEEeecCccc
Q 001951 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
. +..+|.+.++++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 88888776788888888888888764
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.9e-13 Score=132.94 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=120.6
Q ss_pred CCCEEEeecC--CCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCcccCCCCCCcEEEc
Q 001951 87 NCPTIFLHDC--KHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPSLFHLPLNLQTLCL 163 (992)
Q Consensus 87 ~~r~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~l~~Lr~L~L 163 (992)
.++...+.+. .++.+|..+ .+++|++|++++|.+. .+| .|.++++|++|++++|.+..+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4555666553 444555444 7899999999999877 477 478999999999999999999988888899999999
Q ss_pred cCCCCCCcccccCcccCcEEEccCCCCCCCCh--hhhCCCCcCEEeecCCCCCCccCc----------cccCCCCCCCEE
Q 001951 164 DRCALGDIAIIGNLKKLEILSLVDSNIEQLPE--EMAQLTQLRLFDLSGCSKLKVIPP----------NLLSGLSRLEDL 231 (992)
Q Consensus 164 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~LP~--~i~~L~~L~~L~l~~~~~l~~~p~----------~~i~~L~~L~~L 231 (992)
++|.+..++.++++++|++|++++|.+..+|. .+.++++|++|++++|. +...++ ..+..+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999988889999999999999999998875 79999999999999997 543322 236789999999
Q ss_pred EeecCccc
Q 001951 232 YMGNTSVK 239 (992)
Q Consensus 232 ~l~~~~~~ 239 (992)
+ ++.+.
T Consensus 180 d--~~~i~ 185 (198)
T 1ds9_A 180 D--GMPVD 185 (198)
T ss_dssp C--CGGGT
T ss_pred C--CcccC
Confidence 7 44443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.6e-10 Score=108.84 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=64.9
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 187 (992)
++++++++.+. .+|..++ ++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+ ..+.++++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555443 4554332 5566666666666655 44566666777777777766655 2356677777777777
Q ss_pred CCCCCCChh-hhCCCCcCEEeecCCCCCCccCc
Q 001951 188 SNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPP 219 (992)
Q Consensus 188 ~~l~~LP~~-i~~L~~L~~L~l~~~~~l~~~p~ 219 (992)
|.+..+|.. +.++.+|++|++++|. +...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 777777654 6777777777777776 544443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=6.4e-10 Score=120.76 Aligned_cols=188 Identities=17% Similarity=0.124 Sum_probs=123.1
Q ss_pred CCCCCEEEeecCCCc--------------------ccCCCC--C--------CCCccEEEcCCCCCCCCcChhhhcCCCC
Q 001951 85 LKNCPTIFLHDCKHW--------------------EVPEGL--E--------YPQLEFFCMSPRDHSIKIPNHVFAGMSN 134 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~~~~~~~~~~~~~~~l~~ 134 (992)
+.+++.|++++|.+. .+|... + +++|+.+.+.. .+. .++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 456777888777665 344333 5 78888888876 443 677777888888
Q ss_pred CcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCC----CCc--ccc---------------------------------
Q 001951 135 LRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCAL----GDI--AII--------------------------------- 174 (992)
Q Consensus 135 Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l----~~l--~~i--------------------------------- 174 (992)
|+.+++.++.+..+++ +|..+.++.++.+..... ..+ ..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 8888888887766643 666666677666554110 000 000
Q ss_pred -----------------cCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCC-EEEeec
Q 001951 175 -----------------GNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLE-DLYMGN 235 (992)
Q Consensus 175 -----------------~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~ 235 (992)
..+.+|+++++++|+++.+|. .|.++.+|+.+++.++ +..++.+++.++.+|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 025678888888777777775 4777888888888775 6777777777888887 777766
Q ss_pred CcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEE
Q 001951 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERY 288 (992)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l 288 (992)
.+. ......+.++++|+.+++..+.+..++..+ ...+|+.+
T Consensus 284 -~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 -SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred -cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 332 123456777778888887777777776655 44555554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=9.9e-10 Score=106.09 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=62.7
Q ss_pred cEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-CcccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001951 111 EFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-PSLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (992)
Q Consensus 111 r~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 187 (992)
+++++++|.+. .+|..+ .++|++|+|++|.++.+ |..|..+++|++|+|++|.+..+ ..+.++++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555544 355433 25566677777766665 44566677777777777776655 3356777777777777
Q ss_pred CCCCCCChh-hhCCCCcCEEeecCCC
Q 001951 188 SNIEQLPEE-MAQLTQLRLFDLSGCS 212 (992)
Q Consensus 188 ~~l~~LP~~-i~~L~~L~~L~l~~~~ 212 (992)
|.++.+|.. +.++.+|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 777777653 6777777777777775
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=2.3e-09 Score=116.38 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=140.0
Q ss_pred CCCCCEEEeecCCC-cccCCCCC-CCCccEEEcCCCCCC-------------------CCcChhhhcC--------CCCC
Q 001951 85 LKNCPTIFLHDCKH-WEVPEGLE-YPQLEFFCMSPRDHS-------------------IKIPNHVFAG--------MSNL 135 (992)
Q Consensus 85 ~~~~r~l~l~~~~~-~~l~~~~~-~~~Lr~L~l~~~~~~-------------------~~~~~~~~~~--------l~~L 135 (992)
..++++|.+.++-- .++..... +++|++|++++|.+. ..++..+|.+ +++|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45788999886411 11111112 789999999888754 0467788999 9999
Q ss_pred cEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCC----C-----------------
Q 001951 136 RGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNI----E----------------- 191 (992)
Q Consensus 136 r~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l----~----------------- 191 (992)
+.|+|.+ .++.+++ +|.++++|+.+++.++.+..+ ..|....++.++.+..... .
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999999 8888875 799999999999999988755 6677777788777655210 0
Q ss_pred ------CCChhh----------------------------hCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCc
Q 001951 192 ------QLPEEM----------------------------AQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 237 (992)
Q Consensus 192 ------~LP~~i----------------------------~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 237 (992)
.+|..+ ..+.+|+.+++++|. +..+|...+.++.+|+++++..+
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-
Confidence 111100 137899999999987 99999998999999999999886
Q ss_pred ccccccccccCCCCCChhhhcCCCCCC-EEEeeccCCccCCCcc--ccCCccEEEEE
Q 001951 238 VKWEFEGLNVGRSNASLQELKLLSHLT-TLEIQICDAMILPKGL--FSKKLERYKIF 291 (992)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~--~~~~L~~l~l~ 291 (992)
+. ......+.++.+|+ .+++.. .+..++..+ .+.+|+.+.+.
T Consensus 261 i~-----------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 261 LK-----------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CC-----------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred cc-----------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 33 22345688899999 999987 677776665 56677777653
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.6e-08 Score=110.84 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=76.7
Q ss_pred EEEeeCC-cCccCCcccCCCCCCcEEEccC-CCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCC
Q 001951 137 GLALSNM-QFLSLPSLFHLPLNLQTLCLDR-CALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGC 211 (992)
Q Consensus 137 ~L~Ls~~-~i~~lp~~i~~l~~Lr~L~L~~-~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~ 211 (992)
.++++++ .++.+|. |..+.+|++|+|++ |.+..+ ..|++|.+|++|+|++|.+..+|. .|++|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 7788887 88888888888885 777755 467888888888888888887654 5788888888888888
Q ss_pred CCCCccCccccCCCCCCCEEEeecCccc
Q 001951 212 SKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 212 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
. +..+|.+.+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 8888877555554 888888887664
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=1.2e-09 Score=119.79 Aligned_cols=132 Identities=18% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCcEEEeeCCcCcc--CCcccCCCCCCcEEEccCCCCCCc--ccc-----cCcccCcEEEccCCCCCC-----CChhhh
Q 001951 133 SNLRGLALSNMQFLS--LPSLFHLPLNLQTLCLDRCALGDI--AII-----GNLKKLEILSLVDSNIEQ-----LPEEMA 198 (992)
Q Consensus 133 ~~Lr~L~Ls~~~i~~--lp~~i~~l~~Lr~L~L~~~~l~~l--~~i-----~~L~~L~~L~L~~~~l~~-----LP~~i~ 198 (992)
++|++|+|++|.+.. +..-...+.+|++|+|++|.+... ..+ ....+|++|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555431 111111234555555555555421 122 123456666666655542 334445
Q ss_pred CCCCcCEEeecCCCCCCcc-----CccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 199 QLTQLRLFDLSGCSKLKVI-----PPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 199 ~L~~L~~L~l~~~~~l~~~-----p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
.+++|++|++++|. +... +.. +...++|++|++++|.+...+. ......+...++|++|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~-------~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA-------LALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH-------HHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH-------HHHHHHHHhCCCCCEEeccCCCC
Confidence 55566666666655 4322 111 3445566666666665541110 11223344555666666666654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.6e-08 Score=106.37 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=72.8
Q ss_pred EEcCCC-CCCCCcChhhhcCCCCCcEEEeeC-CcCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccC
Q 001951 113 FCMSPR-DHSIKIPNHVFAGMSNLRGLALSN-MQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVD 187 (992)
Q Consensus 113 L~l~~~-~~~~~~~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 187 (992)
++++++ .+. .+|. +..+++|++|+|++ |.+..+| ..|+.+.+|++|+|++|.+..+ ..|++|++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 444 5666 67778888888885 8888776 4688888888888888888755 4678888888888888
Q ss_pred CCCCCCChhhhCCCCcCEEeecCCC
Q 001951 188 SNIEQLPEEMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 188 ~~l~~LP~~i~~L~~L~~L~l~~~~ 212 (992)
|.+..+|..+.....|++|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 8888888765444448888888876
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=1e-09 Score=120.39 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=116.0
Q ss_pred cCCCCCEEEeecCCCcccC-----CCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccC-----Ccc
Q 001951 84 MLKNCPTIFLHDCKHWEVP-----EGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSL-----PSL 151 (992)
Q Consensus 84 ~~~~~r~l~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-----p~~ 151 (992)
+.+.++.+++++|.+.... ..+ ..++|++|++++|.+...-...++..+++|++|+|++|.+... ...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4567899999999875322 111 3479999999999875332334445667899999999998632 222
Q ss_pred c-CCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCC-----CChhhhCCCCcCEEeecCCCCCCccCc
Q 001951 152 F-HLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKVIPP 219 (992)
Q Consensus 152 i-~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i~~L~~L~~L~l~~~~~l~~~p~ 219 (992)
+ ....+|++|+|++|.+.. + ..+...++|++|||++|.+.. ++..+....+|++|++++|. ++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 3 356899999999999864 2 455788999999999998873 45677888999999999998 764322
Q ss_pred c----ccCCCCCCCEEEeecCccc
Q 001951 220 N----LLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 220 ~----~i~~L~~L~~L~l~~~~~~ 239 (992)
. .+...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 1446689999999999876
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=8.7e-07 Score=98.02 Aligned_cols=231 Identities=13% Similarity=0.176 Sum_probs=131.4
Q ss_pred CCCCEEEeecCCCcccCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEc
Q 001951 86 KNCPTIFLHDCKHWEVPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCL 163 (992)
Q Consensus 86 ~~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L 163 (992)
..+..+.+.. .+..++... .-.+|+.+.+..+ + ..+...+|.+. +|+.+.+.+ .++.++ .+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444444442 344444332 2236777777654 2 25666667664 577777765 555554 36777777777777
Q ss_pred cCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccc
Q 001951 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKW 240 (992)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 240 (992)
.+|.+..+ ..|. ..+|+.+.+.. .++.++. .|.++.+|+.+++..+ +..++...+.+ .+|+.+.+..+ +.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-
Confidence 77776655 3333 46777777764 3666653 4667777777777653 56666665655 67777776443 22
Q ss_pred cccccccCCCCCChhhhcCCCCCCEEEeeccCCc-----cCCCcc--ccCCccEEEEEeCCccCccCCcCcceEEEeecc
Q 001951 241 EFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM-----ILPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLY 313 (992)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~ 313 (992)
......+.++++|+.+.+..+... .++..+ .+.+|+.+.+..+ +
T Consensus 261 ----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i------------------ 311 (401)
T 4fdw_A 261 ----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I------------------ 311 (401)
T ss_dssp ----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C------------------
T ss_pred ----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e------------------
Confidence 112345666777777777665443 344433 4455655544210 0
Q ss_pred cCChHH-HHHhhcccceeeccccCCcccccccccccccccccEEEeecCC
Q 001951 314 TSNVDE-VIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHVQNNP 362 (992)
Q Consensus 314 ~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 362 (992)
..++. .+..+.+|+.+.+.. +++.. ..-.+.++ +|+.+.+.++.
T Consensus 312 -~~I~~~aF~~c~~L~~l~lp~--~l~~I-~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 -RILGQGLLGGNRKVTQLTIPA--NVTQI-NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -CEECTTTTTTCCSCCEEEECT--TCCEE-CTTSSSSS-CCCEEEECCSS
T ss_pred -EEEhhhhhcCCCCccEEEECc--cccEE-cHHhCCCC-CCCEEEEcCCC
Confidence 11111 334466777777743 23332 22234667 89999988774
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=2.3e-06 Score=94.71 Aligned_cols=186 Identities=14% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCCEEEeecCCCcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEc
Q 001951 87 NCPTIFLHDCKHWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCL 163 (992)
Q Consensus 87 ~~r~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L 163 (992)
+++.+.+.. .+..+.... +|++|+.+.+..|.+. .++..+|. ..+|+.+.+..+ ++.++. +|.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 456666654 455555433 6788888888776655 56666666 467777777643 555543 6777777777777
Q ss_pred cCCCCCCc--ccccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCC-----ccCccccCCCCCCCEEEeec
Q 001951 164 DRCALGDI--AIIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLK-----VIPPNLLSGLSRLEDLYMGN 235 (992)
Q Consensus 164 ~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~-----~~p~~~i~~L~~L~~L~l~~ 235 (992)
..+ +..+ ..|.+ .+|+.+++. +.++.++ ..|.++.+|+.+++.++. .. .++...+.++.+|+.+.+..
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC
Confidence 653 3433 34444 566666663 3455553 346666677777666553 22 45655566666777666653
Q ss_pred CcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCccCCCcc--ccCCccEEEEEeCC
Q 001951 236 TSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGL--FSKKLERYKIFIGD 294 (992)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~ 294 (992)
+ +. ......+.++++|+.+.+..+ +..+...+ .. +|+.+.+..+.
T Consensus 310 ~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 S-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp T-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred c-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 2 22 112334556666666666432 44444444 33 66666665443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=4.2e-05 Score=84.90 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred CcccCCCC--CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--c
Q 001951 98 HWEVPEGL--EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--A 172 (992)
Q Consensus 98 ~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~ 172 (992)
+.++.... +|.+|+++.+..+ + ..+...+|.++.+|+.+++..+ ++.+++ +|..+.+|+.+.+..+ +..+ .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34455433 6888888888643 3 3677788888888888888654 555543 6777777777665533 2221 2
Q ss_pred cccCcccCcEEEccCCCCCCCC-hhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeec
Q 001951 173 IIGNLKKLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGN 235 (992)
Q Consensus 173 ~i~~L~~L~~L~L~~~~l~~LP-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 235 (992)
.+.+...+...... .+..+. ..+.++.+|+.+.+..+ +..++.+.+..+.+|+.+.+..
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 33333222222211 112221 23555556666655432 3445555555555555555543
No 148
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.13 E-value=3.9e-07 Score=105.82 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=47.8
Q ss_pred eheeccc--cCcCC---cccHHHHHHHHHHHHHHHhhCCccccCC--CCCcEEecHHHHHHHHHHhccCcc
Q 001951 4 LKYGTGL--HIFKG---TYTMQETRDRLYALVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDRH 67 (992)
Q Consensus 4 i~~Wia~--G~i~~---~~~~e~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHDli~dla~~i~~~e~~ 67 (992)
|++|+|+ ||+.. +.++|++++ | |++|++|||||..+ ...+|+|||+|||+|+.++++++.
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~---l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-R---LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-H---HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-H---HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 6789999 99974 457888888 7 99999999999643 456899999999999999988763
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.5e-06 Score=82.06 Aligned_cols=18 Identities=11% Similarity=0.414 Sum_probs=8.2
Q ss_pred ccCCcCEEEEcCCCCCcc
Q 001951 817 SFKNLTTLELWYCQRLMN 834 (992)
Q Consensus 817 ~~~~L~~L~i~~C~~L~~ 834 (992)
.+++|++|++++|.++++
T Consensus 83 ~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCSCCCEEEEESCTTCCH
T ss_pred CCCCCCEEEeCCCCccCH
Confidence 344444444444444443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.4e-06 Score=82.34 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=41.9
Q ss_pred ccccccccEEEEeccCCccccc-CCcc----ccCCcCEEEEcCCCCCcccchhHhhhccCCccEEEEccCcchhh
Q 001951 791 DSITENLESLEVWWCENLINLV-PSSA----SFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTE 860 (992)
Q Consensus 791 ~~~l~~L~~L~i~~c~~l~~l~-~~~~----~~~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~c~~l~~ 860 (992)
+..+++|++|++++|..++.-. ..+. .+++|++|+|++|+++++-.... +..+++|++|+|++|+.+++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence 4456666667777776663210 1111 13467888888888777755443 34567788888888776554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=1.9e-06 Score=93.42 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=108.4
Q ss_pred CCCCEEEeecCCCc---------ccCCCC-CCCCccEEEcCCCCCC--------CCcChhhhcCCCCCcEEEeeCCcCcc
Q 001951 86 KNCPTIFLHDCKHW---------EVPEGL-EYPQLEFFCMSPRDHS--------IKIPNHVFAGMSNLRGLALSNMQFLS 147 (992)
Q Consensus 86 ~~~r~l~l~~~~~~---------~l~~~~-~~~~Lr~L~l~~~~~~--------~~~~~~~~~~l~~Lr~L~Ls~~~i~~ 147 (992)
.+++.|.+....+. .+.... .+++||.|.+...... ..-...++..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35677777654322 111212 4689999988654221 01123556788999999998874234
Q ss_pred CCcccCCCCCCcEEEccCCCCCC--ccccc--CcccCcEEEccCC--C------CCCCChhh--hCCCCcCEEeecCCCC
Q 001951 148 LPSLFHLPLNLQTLCLDRCALGD--IAIIG--NLKKLEILSLVDS--N------IEQLPEEM--AQLTQLRLFDLSGCSK 213 (992)
Q Consensus 148 lp~~i~~l~~Lr~L~L~~~~l~~--l~~i~--~L~~L~~L~L~~~--~------l~~LP~~i--~~L~~L~~L~l~~~~~ 213 (992)
+|. +. +.+|++|++..|.+.. +..++ ++++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~- 263 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE- 263 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-
Confidence 554 43 7899999999888752 24443 7889999998631 1 22222222 357889999998886
Q ss_pred CCc-cCccc--cCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCC
Q 001951 214 LKV-IPPNL--LSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDA 273 (992)
Q Consensus 214 l~~-~p~~~--i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (992)
+.. .+..+ ...+++|++|+++.|.+...+. ......+.++++|+.|+++.|.+
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 432 11110 1357789999998887651110 11233456778899999887764
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=3.9e-05 Score=85.12 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=89.5
Q ss_pred CcChhhhcCCCCCcEEEeeCCcCccCCc-ccCCCCCCcEEEccCCCCCCc--ccccCcccCcEEEccCCCCCCCCh-hhh
Q 001951 123 KIPNHVFAGMSNLRGLALSNMQFLSLPS-LFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEILSLVDSNIEQLPE-EMA 198 (992)
Q Consensus 123 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~LP~-~i~ 198 (992)
.|...+|.++++|+.+.+.. .++.+++ +|.++.+|+.+++..+ ++.+ ..+.++.+|+.+.+..+ +..+.. .+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 57778899999999999974 4777754 7999999999999755 5544 56778888888777653 444433 455
Q ss_pred CCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCCCCEEEeecc
Q 001951 199 QLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQIC 271 (992)
Q Consensus 199 ~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (992)
....+...... ....+....+.++.+|+.+.+..+... .....+.++.+|+.+.+..+
T Consensus 138 ~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 138 GCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCTT
T ss_pred cccccccccCc---cccccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCCC
Confidence 55443333322 245666666889999999998654322 12345667777777776543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=2.9e-06 Score=82.76 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=48.3
Q ss_pred hhcCCCCCcEEEeeCC-cCc-----cCCcccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCCC---
Q 001951 128 VFAGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIEQ--- 192 (992)
Q Consensus 128 ~~~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~--- 192 (992)
++...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ + ..+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777766 554 234455556667777777776652 1 334444566666666665552
Q ss_pred --CChhhhCCCCcCEEee--cCCC
Q 001951 193 --LPEEMAQLTQLRLFDL--SGCS 212 (992)
Q Consensus 193 --LP~~i~~L~~L~~L~l--~~~~ 212 (992)
+...+...++|++|++ ++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHhCCCceEEEecCCCCC
Confidence 3444555555666666 4444
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=8.7e-06 Score=79.30 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=89.2
Q ss_pred CcccCCCCCCcEEEccCC-CCCC-----c-ccccCcccCcEEEccCCCCCC-----CChhhhCCCCcCEEeecCCCCCCc
Q 001951 149 PSLFHLPLNLQTLCLDRC-ALGD-----I-AIIGNLKKLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKV 216 (992)
Q Consensus 149 p~~i~~l~~Lr~L~L~~~-~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-----LP~~i~~L~~L~~L~l~~~~~l~~ 216 (992)
...+...++|++|+|++| .+.. + ..+...++|++|+|++|.+.. +...+...++|++|++++|. +..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 345677899999999999 8873 3 567778999999999998873 45567778999999999998 665
Q ss_pred -----cCccccCCCCCCCEEEe--ecCcccccccccccCCCCCChhhhcCCCCCCEEEeeccCCc
Q 001951 217 -----IPPNLLSGLSRLEDLYM--GNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 274 (992)
Q Consensus 217 -----~p~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (992)
+... +...++|++|++ ++|.+..++. ......+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~-------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE-------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH-------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH-------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3333 677789999999 7787762211 123455677788999999988753
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.77 E-value=2.2e-05 Score=84.95 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=101.2
Q ss_pred CCCCCEEEeecCCCcc----------cCCCC-CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCcc-CCccc
Q 001951 85 LKNCPTIFLHDCKHWE----------VPEGL-EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLS-LPSLF 152 (992)
Q Consensus 85 ~~~~r~l~l~~~~~~~----------l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i 152 (992)
+.+++.|.+....... +...+ .+++|+.|.+.++... .++. +. +++|+.|+|..+.+.. ....+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHH
Confidence 5799999997643221 11112 5799999999887422 3443 33 7899999999887652 11223
Q ss_pred --CCCCCCcEEEccCC--C------CCCc-ccc--cCcccCcEEEccCCCCCC-CChhh---hCCCCcCEEeecCCCCCC
Q 001951 153 --HLPLNLQTLCLDRC--A------LGDI-AII--GNLKKLEILSLVDSNIEQ-LPEEM---AQLTQLRLFDLSGCSKLK 215 (992)
Q Consensus 153 --~~l~~Lr~L~L~~~--~------l~~l-~~i--~~L~~L~~L~L~~~~l~~-LP~~i---~~L~~L~~L~l~~~~~l~ 215 (992)
..+++|++|+|+.+ . +..+ ..+ +.+++|++|++++|.+.. .+..+ ..+++|++|+++.|. +.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 37899999998632 1 2222 222 357999999999998762 22233 357899999999887 66
Q ss_pred c-----cCccccCCCCCCCEEEeecCccc
Q 001951 216 V-----IPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 216 ~-----~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
. ++.+ +..+++|+.|+++.|.+.
T Consensus 293 d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 293 DEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred hHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 5 3333 456899999999999875
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=2.8e-05 Score=79.58 Aligned_cols=61 Identities=30% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCCCCcEEEeeCCcCccC---CcccCCCCCCcEEEccCCCCCCcccccCcc--cCcEEEccCCCCC
Q 001951 131 GMSNLRGLALSNMQFLSL---PSLFHLPLNLQTLCLDRCALGDIAIIGNLK--KLEILSLVDSNIE 191 (992)
Q Consensus 131 ~l~~Lr~L~Ls~~~i~~l---p~~i~~l~~Lr~L~L~~~~l~~l~~i~~L~--~L~~L~L~~~~l~ 191 (992)
++++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+..+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 345555555555555433 233445555555555555555443333333 5555555555443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.0062 Score=67.19 Aligned_cols=147 Identities=11% Similarity=0.203 Sum_probs=92.2
Q ss_pred CCC-CccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCc---CccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcc
Q 001951 106 EYP-QLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQ---FLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLK 178 (992)
Q Consensus 106 ~~~-~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~---i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~ 178 (992)
+++ .|+++.+..+ . ..+...+|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ +..+ ..+..+.
T Consensus 61 ~~~~~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 453 5888888653 2 26777888888888888887653 55554 36777788887766543 3433 5567778
Q ss_pred cCcEEEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhh
Q 001951 179 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 257 (992)
Q Consensus 179 ~L~~L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 257 (992)
+|+.+.+..+ +..++. .+....+|+.+.+..+ +..+....+.. .+|+.+.+..+... .....+
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~------------i~~~af 201 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR------------IGTNAF 201 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE------------ECTTTT
T ss_pred ccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc------------cccchh
Confidence 8888888643 444443 4677788888887654 56666664543 56777776543221 122344
Q ss_pred cCCCCCCEEEeecc
Q 001951 258 KLLSHLTTLEIQIC 271 (992)
Q Consensus 258 ~~l~~L~~L~l~~~ 271 (992)
.+..++........
T Consensus 202 ~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 202 SECFALSTITSDSE 215 (394)
T ss_dssp TTCTTCCEEEECCS
T ss_pred hhccccceeccccc
Confidence 55556666555443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.01 Score=65.44 Aligned_cols=110 Identities=13% Similarity=0.219 Sum_probs=81.7
Q ss_pred CcChhhhcCCC-CCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCC---CCCc--ccccCcccCcEEEccCCCCCCCCh
Q 001951 123 KIPNHVFAGMS-NLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCA---LGDI--AIIGNLKKLEILSLVDSNIEQLPE 195 (992)
Q Consensus 123 ~~~~~~~~~l~-~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~---l~~l--~~i~~L~~L~~L~L~~~~l~~LP~ 195 (992)
.|.+.+|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 46677788885 5999999754 66664 479999999999998764 5555 56777788888777653 555654
Q ss_pred -hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecC
Q 001951 196 -EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (992)
Q Consensus 196 -~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (992)
.+..+.+|+.+.+... +..++...+....+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 4678888999888653 56777777888888888887654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00014 Score=74.34 Aligned_cols=59 Identities=25% Similarity=0.466 Sum_probs=26.6
Q ss_pred cccCcEEEccCCCCCCC---ChhhhCCCCcCEEeecCCCCCCccCccccCCCC--CCCEEEeecCcc
Q 001951 177 LKKLEILSLVDSNIEQL---PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLS--RLEDLYMGNTSV 238 (992)
Q Consensus 177 L~~L~~L~L~~~~l~~L---P~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~--~L~~L~l~~~~~ 238 (992)
+++|++|+|++|.+..+ |..+.++++|++|+|++|. +..+.. +..+. +|++|++.+|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcC
Confidence 44444444444444432 2334455555555555554 443321 22222 555555555544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.24 E-value=0.05 Score=59.44 Aligned_cols=145 Identities=13% Similarity=0.199 Sum_probs=90.1
Q ss_pred CCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcEE
Q 001951 107 YPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEIL 183 (992)
Q Consensus 107 ~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 183 (992)
+..+..+.+.... ..+....|.....|+.+.+..+ +..++ .++..+.+|+.+.+..+ +..+ ..+.+..+|+.+
T Consensus 193 ~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccce--eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 4445555443322 1334455667777777777544 33333 35677777888777654 4444 456677778877
Q ss_pred EccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCcccccccccccCCCCCChhhhcCCCC
Q 001951 184 SLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 262 (992)
Q Consensus 184 ~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 262 (992)
.+.. ++..++. .+..+.+|+.+.+.++. ++.++...+.++.+|+.+.+..+ +. ......+.++++
T Consensus 269 ~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-----------~I~~~aF~~C~~ 334 (379)
T 4h09_A 269 NFYA-KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-----------TIQVYAFKNCKA 334 (379)
T ss_dssp EECC-CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-----------EECTTTTTTCTT
T ss_pred cccc-cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-----------EEHHHHhhCCCC
Confidence 7754 3555654 46777888888887665 77777777778888888877543 22 112345667777
Q ss_pred CCEEEee
Q 001951 263 LTTLEIQ 269 (992)
Q Consensus 263 L~~L~l~ 269 (992)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 7777664
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.96 E-value=0.11 Score=56.58 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=97.3
Q ss_pred CCCCccEEEcCCCCCCCCcChhhhcCCCCCcEEEeeCCcCccCC-cccCCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 001951 106 EYPQLEFFCMSPRDHSIKIPNHVFAGMSNLRGLALSNMQFLSLP-SLFHLPLNLQTLCLDRCALGDI--AIIGNLKKLEI 182 (992)
Q Consensus 106 ~~~~Lr~L~l~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~l~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 182 (992)
.+..++.+.+..+- ..+....|.++..|+.+.+..+ ++.+. .++.++.+|+.+.+..+ +..+ ..+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 57788888886542 2566777889999999998765 55554 46788889999988654 4444 56788899999
Q ss_pred EEccCCCCCCCCh-hhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecC
Q 001951 183 LSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNT 236 (992)
Q Consensus 183 L~L~~~~l~~LP~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 236 (992)
+++.++.++.++. .|.++.+|+.+.+..+ ++.++...+.++.+|+++.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 9999888888865 5888999999999753 78888887889999999887654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.95 E-value=0.03 Score=50.14 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=44.2
Q ss_pred cEEEccCCCCC--CCChhhhCCCCcCEEeecCCCCCCccCccccCCCCCCCEEEeecCccc
Q 001951 181 EILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK 239 (992)
Q Consensus 181 ~~L~L~~~~l~--~LP~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 239 (992)
.+++.++++++ .+|..+. .+|++|+|++|. ++.+|.+++..+++|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 36777888887 8886543 468899999888 88888887888888999998888654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.47 E-value=0.058 Score=48.24 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=13.2
Q ss_pred EEEeeCCcCc--cCCcccCCCCCCcEEEccCCCCC
Q 001951 137 GLALSNMQFL--SLPSLFHLPLNLQTLCLDRCALG 169 (992)
Q Consensus 137 ~L~Ls~~~i~--~lp~~i~~l~~Lr~L~L~~~~l~ 169 (992)
+++.+++.++ .+|..+. .+|++|+|++|.|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~ 44 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT 44 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC
Confidence 4444555554 4553321 23444444444433
No 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.10 E-value=0.032 Score=66.89 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.1
Q ss_pred eeheeccccCcCCcccHHHHHHHHHHHHHHHhhCCccccCCCCCcEEecHHHHHHHH
Q 001951 3 LLKYGTGLHIFKGTYTMQETRDRLYALVHKLKDYCLLLDGPTEDWIRMHDLVREVAI 59 (992)
Q Consensus 3 Li~~Wia~G~i~~~~~~e~~~~~~~~~~~~L~~~~l~~~~~~~~~~~mHDli~dla~ 59 (992)
++.+|+++| ++.+..+ +++|++||||+..+...+|+|||+++|++.
T Consensus 392 La~LW~aeG--------eedAe~~---L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 392 LSLIWFDVI--------KSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHCSSC--------SHHHHHH---HHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHhcCCC--------HHHHHHH---HHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 567888887 1234445 999999999997655678999999999774
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.88 E-value=0.064 Score=51.52 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=36.2
Q ss_pred hcCCCCCcEEEeeCC-cCc-----cCCcccCCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEccCCCCC
Q 001951 129 FAGMSNLRGLALSNM-QFL-----SLPSLFHLPLNLQTLCLDRCALGD-----I-AIIGNLKKLEILSLVDSNIE 191 (992)
Q Consensus 129 ~~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~ 191 (992)
+.+-+.|+.|+|+++ .|. .+-+++..=++|+.|+|++|.|.+ + ..+..=+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445566777777764 554 233445555667777777776652 2 33334455666666666554
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.22 E-value=0.094 Score=50.35 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=27.8
Q ss_pred CCCCcEEEccCC-CCCC-----c-ccccCcccCcEEEccCCCCC-----CCChhhhCCCCcCEEeecCCC
Q 001951 155 PLNLQTLCLDRC-ALGD-----I-AIIGNLKKLEILSLVDSNIE-----QLPEEMAQLTQLRLFDLSGCS 212 (992)
Q Consensus 155 l~~Lr~L~L~~~-~l~~-----l-~~i~~L~~L~~L~L~~~~l~-----~LP~~i~~L~~L~~L~l~~~~ 212 (992)
-..|+.|+|+++ .|.+ + ..+..-..|+.|+|++|.+. .+-+.+..-+.|++|+|+.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 345555555553 4431 1 33444455555555555544 222334444555555555554
No 167
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.35 E-value=0.087 Score=67.88 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHhhCCccccCC--CCCcEEecHHHHHHHHHHhccCc
Q 001951 29 LVHKLKDYCLLLDGP--TEDWIRMHDLVREVAISIASRDR 66 (992)
Q Consensus 29 ~~~~L~~~~l~~~~~--~~~~~~mHDli~dla~~i~~~e~ 66 (992)
++++|+++||++... +..+|+|||+||++|+..+.+|.
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 399999999998543 23369999999999999987763
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=77.52 E-value=1.1 Score=51.93 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCccccC--CCCCcEEecHHHHHHHHHHhc
Q 001951 27 YALVHKLKDYCLLLDG--PTEDWIRMHDLVREVAISIAS 63 (992)
Q Consensus 27 ~~~~~~L~~~~l~~~~--~~~~~~~mHDli~dla~~i~~ 63 (992)
..++++|+++|||+.. +....|+|||+||++++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 3449999999999843 333589999999999998743
Done!