Query 001953
Match_columns 992
No_of_seqs 728 out of 2853
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 5.8E-46 1.3E-50 413.8 30.1 365 195-591 62-465 (476)
2 KOG1427 Uncharacterized conser 100.0 3.8E-41 8.3E-46 352.3 21.6 361 198-590 17-398 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 1.3E-39 2.9E-44 363.0 29.9 342 177-538 99-464 (476)
4 KOG1427 Uncharacterized conser 100.0 1.1E-36 2.3E-41 319.0 17.6 320 184-539 60-399 (443)
5 PF08381 BRX: Transcription fa 100.0 4.7E-31 1E-35 215.2 6.3 55 933-987 5-59 (59)
6 KOG0783 Uncharacterized conser 99.9 1.2E-25 2.5E-30 259.6 16.4 306 195-541 136-451 (1267)
7 KOG0783 Uncharacterized conser 99.9 3.4E-25 7.4E-30 255.8 14.9 303 258-591 137-449 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 9.1E-20 2E-24 216.3 24.8 347 196-588 493-892 (3738)
9 KOG1428 Inhibitor of type V ad 99.8 4.5E-18 9.7E-23 202.2 22.4 263 244-531 569-887 (3738)
10 cd01248 PH_PLC Phospholipase C 99.4 5.3E-13 1.1E-17 128.3 5.0 71 2-72 35-115 (115)
11 PF13713 BRX_N: Transcription 99.3 3.1E-13 6.8E-18 102.1 2.0 32 845-876 1-32 (39)
12 PF01363 FYVE: FYVE zinc finge 99.2 8.1E-12 1.8E-16 109.0 1.6 68 591-658 1-68 (69)
13 KOG0941 E3 ubiquitin protein l 99.1 8.1E-13 1.8E-17 156.8 -9.4 191 234-488 4-197 (850)
14 PF00415 RCC1: Regulator of ch 99.1 1E-10 2.2E-15 95.5 4.5 50 539-588 1-51 (51)
15 smart00064 FYVE Protein presen 99.0 3.3E-10 7.2E-15 98.5 3.4 67 591-659 2-68 (68)
16 PF00415 RCC1: Regulator of ch 99.0 7.6E-10 1.6E-14 90.4 5.2 50 262-311 1-51 (51)
17 KOG1818 Membrane trafficking a 98.9 3.7E-10 7.9E-15 132.9 2.2 66 596-663 162-227 (634)
18 KOG0169 Phosphoinositide-speci 98.9 3.1E-10 6.8E-15 134.6 0.4 99 2-116 46-149 (746)
19 PF12814 Mcp5_PH: Meiotic cell 98.9 3.2E-09 6.9E-14 103.4 6.7 72 1-75 43-123 (123)
20 KOG1729 FYVE finger containing 98.8 7.1E-10 1.5E-14 121.3 0.8 67 590-659 159-226 (288)
21 KOG0941 E3 ubiquitin protein l 98.8 1.5E-10 3.3E-15 137.8 -6.7 181 349-540 12-197 (850)
22 PTZ00303 phosphatidylinositol 98.8 4E-09 8.7E-14 123.0 3.8 72 589-660 449-532 (1374)
23 PF13540 RCC1_2: Regulator of 98.7 2.1E-08 4.5E-13 72.9 4.9 30 523-552 1-30 (30)
24 KOG1819 FYVE finger-containing 98.7 3.5E-09 7.5E-14 118.3 0.3 71 584-656 886-961 (990)
25 PF13540 RCC1_2: Regulator of 98.7 3.1E-08 6.8E-13 72.0 4.6 30 246-275 1-30 (30)
26 cd00065 FYVE FYVE domain; Zinc 98.5 6.9E-08 1.5E-12 80.9 2.5 55 599-655 2-56 (57)
27 KOG1842 FYVE finger-containing 97.8 2.8E-06 6E-11 95.5 -2.0 70 592-661 173-262 (505)
28 KOG1264 Phospholipase C [Lipid 97.7 1.2E-05 2.6E-10 95.5 1.6 68 10-77 61-134 (1267)
29 KOG1409 Uncharacterized conser 97.6 2.5E-05 5.4E-10 85.7 1.8 83 577-662 255-354 (404)
30 KOG1841 Smad anchor for recept 97.4 7.1E-05 1.5E-09 92.3 2.7 62 589-653 547-608 (1287)
31 KOG1843 Uncharacterized conser 97.1 0.00013 2.9E-09 81.6 0.7 67 591-658 152-219 (473)
32 KOG4424 Predicted Rho/Rac guan 95.1 0.0066 1.4E-07 71.3 0.5 62 596-660 412-474 (623)
33 cd01244 PH_RasGAP_CG9209 RAS_G 95.0 0.064 1.4E-06 50.3 6.6 62 2-71 33-97 (98)
34 PF11725 AvrE: Pathogenicity f 94.0 1.8 4E-05 57.3 18.2 285 245-591 490-814 (1774)
35 smart00233 PH Pleckstrin homol 93.6 0.22 4.8E-06 44.4 6.9 54 12-73 47-101 (102)
36 cd01235 PH_SETbf Set binding f 93.1 0.31 6.6E-06 45.3 7.2 69 2-73 29-101 (101)
37 PF00169 PH: PH domain; Inter 92.9 0.41 8.8E-06 43.5 7.6 57 13-74 47-104 (104)
38 cd01264 PH_melted Melted pleck 92.4 0.39 8.4E-06 45.3 6.7 53 12-70 46-98 (101)
39 cd01238 PH_Tec Tec pleckstrin 92.3 0.33 7.1E-06 46.1 6.3 67 2-71 33-105 (106)
40 KOG3669 Uncharacterized conser 92.2 30 0.00064 41.8 22.8 69 245-319 228-298 (705)
41 KOG1811 Predicted Zn2+-binding 92.2 0.015 3.2E-07 68.2 -3.6 65 590-656 313-382 (1141)
42 PF02318 FYVE_2: FYVE-type zin 91.3 0.15 3.2E-06 49.5 2.8 52 598-658 53-105 (118)
43 cd01233 Unc104 Unc-104 pleckst 91.2 0.49 1.1E-05 44.3 6.1 35 40-74 65-99 (100)
44 TIGR02449 conserved hypothetic 90.8 2 4.3E-05 37.2 8.7 62 808-869 1-62 (65)
45 cd00821 PH Pleckstrin homology 90.4 0.43 9.3E-06 42.0 4.8 49 13-71 46-95 (96)
46 cd01236 PH_outspread Outspread 90.1 0.59 1.3E-05 44.4 5.5 50 13-71 53-102 (104)
47 KOG0230 Phosphatidylinositol-4 89.2 0.23 5.1E-06 64.5 2.7 50 599-661 5-54 (1598)
48 cd01266 PH_Gab Gab (Grb2-assoc 89.0 1.5 3.2E-05 41.7 7.4 66 2-72 38-107 (108)
49 cd01251 PH_centaurin_alpha Cen 88.4 1.5 3.3E-05 41.4 7.0 35 41-75 68-102 (103)
50 COG4257 Vgb Streptogramin lyas 87.8 19 0.00041 39.9 15.5 137 193-375 65-205 (353)
51 cd01265 PH_PARIS-1 PARIS-1 ple 87.6 1.6 3.5E-05 40.5 6.6 33 40-72 61-93 (95)
52 KOG2999 Regulator of Rac1, req 87.4 0.084 1.8E-06 62.0 -2.5 65 11-75 590-661 (713)
53 KOG4693 Uncharacterized conser 86.6 51 0.0011 36.3 17.7 63 305-376 80-146 (392)
54 PF02403 Seryl_tRNA_N: Seryl-t 85.8 5.2 0.00011 37.9 9.1 70 804-873 26-105 (108)
55 KOG3669 Uncharacterized conser 85.5 32 0.00069 41.5 16.8 70 297-375 228-299 (705)
56 KOG0943 Predicted ubiquitin-pr 84.6 0.2 4.3E-06 62.8 -1.4 132 242-379 372-506 (3015)
57 PF03904 DUF334: Domain of unk 84.5 7.3 0.00016 41.6 10.2 63 804-868 40-109 (230)
58 PRK15396 murein lipoprotein; P 84.3 3.3 7.2E-05 37.2 6.5 41 808-852 26-66 (78)
59 PF12718 Tropomyosin_1: Tropom 84.2 6.9 0.00015 39.3 9.6 56 795-851 16-71 (143)
60 PF12718 Tropomyosin_1: Tropom 84.2 5.6 0.00012 40.0 8.9 47 796-842 24-70 (143)
61 COG3074 Uncharacterized protei 84.1 3.2 6.9E-05 35.9 5.9 45 795-839 27-71 (79)
62 PF02403 Seryl_tRNA_N: Seryl-t 83.3 4.3 9.4E-05 38.4 7.4 9 858-866 83-91 (108)
63 PRK11637 AmiB activator; Provi 82.9 7 0.00015 46.4 10.6 66 798-863 52-117 (428)
64 cd00900 PH-like Pleckstrin hom 82.7 3.7 8.1E-05 36.2 6.5 50 12-71 46-98 (99)
65 cd01246 PH_oxysterol_bp Oxyste 81.6 4.4 9.6E-05 36.3 6.6 32 40-71 58-90 (91)
66 PF11559 ADIP: Afadin- and alp 81.2 14 0.0003 37.3 10.6 66 797-862 56-121 (151)
67 PF11932 DUF3450: Protein of u 80.9 12 0.00026 41.1 10.8 78 794-871 43-120 (251)
68 KOG4693 Uncharacterized conser 80.8 29 0.00062 38.2 13.0 62 253-323 80-148 (392)
69 PF07888 CALCOCO1: Calcium bin 80.4 11 0.00023 45.7 10.7 47 795-841 152-198 (546)
70 PF11559 ADIP: Afadin- and alp 80.2 16 0.00034 36.9 10.6 69 795-863 61-129 (151)
71 PF07888 CALCOCO1: Calcium bin 79.2 10 0.00022 45.8 10.1 76 796-871 146-221 (546)
72 PF10186 Atg14: UV radiation r 79.0 11 0.00025 41.8 10.1 44 795-838 65-108 (302)
73 PRK11637 AmiB activator; Provi 78.8 11 0.00024 44.7 10.4 72 797-868 44-115 (428)
74 PF04728 LPP: Lipoprotein leuc 78.4 11 0.00024 31.6 7.1 41 808-852 4-44 (56)
75 PF03962 Mnd1: Mnd1 family; I 78.3 7.1 0.00015 41.1 7.6 11 856-866 117-127 (188)
76 TIGR00414 serS seryl-tRNA synt 77.8 12 0.00026 44.4 10.2 68 807-874 30-108 (418)
77 cd01260 PH_CNK Connector enhan 77.7 4.7 0.0001 37.1 5.5 33 39-71 62-95 (96)
78 PF11725 AvrE: Pathogenicity f 77.0 12 0.00026 50.1 10.4 70 468-540 743-815 (1774)
79 cd01257 PH_IRS Insulin recepto 76.6 7 0.00015 36.9 6.3 49 13-71 52-100 (101)
80 PRK10884 SH3 domain-containing 76.5 25 0.00055 37.5 11.2 74 796-869 89-166 (206)
81 PF10168 Nup88: Nuclear pore c 76.2 15 0.00032 46.5 10.9 78 795-872 538-623 (717)
82 PLN02320 seryl-tRNA synthetase 76.1 11 0.00025 45.3 9.3 68 807-874 93-169 (502)
83 PF14662 CCDC155: Coiled-coil 75.9 16 0.00034 38.3 9.1 48 793-840 8-55 (193)
84 KOG3799 Rab3 effector RIM1 and 75.2 1.2 2.6E-05 43.3 0.7 55 596-656 62-116 (169)
85 PF02183 HALZ: Homeobox associ 75.1 3.2 7E-05 33.3 3.0 29 795-823 14-42 (45)
86 TIGR00414 serS seryl-tRNA synt 75.0 10 0.00022 44.9 8.6 36 953-988 273-316 (418)
87 PF12325 TMF_TATA_bd: TATA ele 74.2 19 0.00041 35.2 8.6 67 794-871 17-83 (120)
88 PF10211 Ax_dynein_light: Axon 73.8 24 0.00051 37.3 10.1 14 855-868 176-189 (189)
89 PF04111 APG6: Autophagy prote 73.7 20 0.00044 40.8 10.2 76 796-871 53-128 (314)
90 PRK05431 seryl-tRNA synthetase 73.5 18 0.00039 43.0 10.1 69 807-875 28-106 (425)
91 PHA01750 hypothetical protein 73.4 9 0.00019 32.8 5.3 37 802-838 37-73 (75)
92 cd01252 PH_cytohesin Cytohesin 72.7 9.9 0.00021 37.0 6.5 28 50-77 90-117 (125)
93 KOG0977 Nuclear envelope prote 72.5 15 0.00032 44.5 9.0 77 793-869 99-175 (546)
94 PRK05431 seryl-tRNA synthetase 72.2 11 0.00025 44.6 8.1 36 953-988 271-314 (425)
95 KOG1274 WD40 repeat protein [G 71.6 54 0.0012 41.6 13.6 71 304-380 14-88 (933)
96 PF14197 Cep57_CLD_2: Centroso 71.5 53 0.0012 28.9 10.0 65 804-868 2-66 (69)
97 PLN02153 epithiospecifier prot 71.0 1.9E+02 0.0042 32.9 24.4 18 360-378 129-146 (341)
98 KOG0943 Predicted ubiquitin-pr 70.8 1.2 2.6E-05 56.3 -0.4 133 349-500 372-509 (3015)
99 KOG1900 Nuclear pore complex, 70.7 85 0.0018 41.7 15.5 218 257-496 93-340 (1311)
100 KOG4603 TBP-1 interacting prot 70.6 21 0.00045 36.6 8.1 33 803-835 82-114 (201)
101 PRK08475 F0F1 ATP synthase sub 70.5 43 0.00092 34.5 10.9 57 795-851 48-104 (167)
102 cd01256 PH_dynamin Dynamin ple 70.3 9.7 0.00021 35.7 5.3 60 1-69 30-101 (110)
103 cd01222 PH_clg Clg (common-sit 70.1 8 0.00017 36.3 4.9 36 38-73 57-95 (97)
104 KOG0982 Centrosomal protein Nu 69.7 22 0.00047 41.4 9.0 76 793-868 297-386 (502)
105 PF13863 DUF4200: Domain of un 69.5 49 0.0011 32.0 10.6 73 799-871 24-96 (126)
106 COG1579 Zn-ribbon protein, pos 69.2 28 0.0006 38.0 9.5 79 795-876 98-176 (239)
107 PF04849 HAP1_N: HAP1 N-termin 69.1 19 0.00041 40.6 8.4 52 806-871 233-284 (306)
108 PF06005 DUF904: Protein of un 68.8 32 0.00069 30.5 8.1 19 850-868 54-72 (72)
109 KOG1003 Actin filament-coating 68.4 23 0.00049 37.2 8.1 51 818-871 50-103 (205)
110 PRK09039 hypothetical protein; 68.3 24 0.00052 40.7 9.4 69 795-863 125-194 (343)
111 PF04156 IncA: IncA protein; 68.0 35 0.00076 35.6 9.9 53 817-869 98-150 (191)
112 PLN02678 seryl-tRNA synthetase 67.8 26 0.00057 41.9 9.8 76 795-870 19-99 (448)
113 PF06785 UPF0242: Uncharacteri 67.1 40 0.00087 38.0 10.2 55 795-849 129-183 (401)
114 cd01247 PH_GPBP Goodpasture an 67.0 8.4 0.00018 35.5 4.4 32 39-70 57-89 (91)
115 PF10473 CENP-F_leu_zip: Leuci 66.7 33 0.00071 34.5 8.7 16 855-870 125-140 (140)
116 PF00261 Tropomyosin: Tropomyo 66.6 47 0.001 36.2 10.9 75 796-870 116-190 (237)
117 KOG0804 Cytoplasmic Zn-finger 66.4 25 0.00054 41.2 8.8 43 798-840 359-401 (493)
118 PF15035 Rootletin: Ciliary ro 66.3 30 0.00066 36.2 8.8 60 795-854 4-79 (182)
119 PF10168 Nup88: Nuclear pore c 66.2 27 0.00058 44.3 9.9 48 795-842 567-614 (717)
120 PF06092 DUF943: Enterobacteri 65.4 3.1 6.7E-05 42.3 1.2 26 966-991 51-76 (157)
121 PRK06568 F0F1 ATP synthase sub 65.3 73 0.0016 32.5 11.1 52 798-849 33-84 (154)
122 PRK09973 putative outer membra 65.3 21 0.00046 32.6 6.4 42 808-853 25-66 (85)
123 cd01245 PH_RasGAP_CG5898 RAS G 65.2 19 0.00042 33.8 6.4 50 13-71 47-97 (98)
124 PRK15422 septal ring assembly 65.2 19 0.00041 32.3 5.9 44 795-838 27-70 (79)
125 PRK00409 recombination and DNA 64.9 31 0.00067 44.3 10.3 13 58-70 39-51 (782)
126 PRK14161 heat shock protein Gr 64.4 35 0.00076 35.7 8.8 69 794-863 13-81 (178)
127 KOG2391 Vacuolar sorting prote 64.3 36 0.00078 38.6 9.3 47 794-840 233-279 (365)
128 smart00030 CLb CLUSTERIN Beta 64.2 51 0.0011 34.8 9.7 56 803-858 18-80 (206)
129 KOG1029 Endocytic adaptor prot 64.2 21 0.00045 44.3 7.9 46 793-838 472-517 (1118)
130 PRK14143 heat shock protein Gr 64.1 43 0.00094 36.6 9.8 66 797-863 64-129 (238)
131 PRK14160 heat shock protein Gr 64.0 41 0.0009 36.1 9.4 70 793-863 54-123 (211)
132 PF05377 FlaC_arch: Flagella a 63.6 31 0.00068 28.9 6.5 41 803-843 3-43 (55)
133 PF04977 DivIC: Septum formati 63.6 20 0.00043 31.6 6.1 44 802-845 19-62 (80)
134 TIGR03752 conj_TIGR03752 integ 63.6 39 0.00084 40.2 9.9 63 808-870 74-144 (472)
135 cd01219 PH_FGD FGD (faciogenit 63.4 9.8 0.00021 35.7 4.2 35 40-74 66-100 (101)
136 PF10473 CENP-F_leu_zip: Leuci 63.1 71 0.0015 32.1 10.3 76 796-871 20-95 (140)
137 PF09304 Cortex-I_coil: Cortex 63.0 73 0.0016 30.4 9.6 47 795-841 25-71 (107)
138 PF10186 Atg14: UV radiation r 62.9 47 0.001 36.9 10.3 81 795-875 72-160 (302)
139 cd01250 PH_centaurin Centaurin 62.6 8.5 0.00018 34.7 3.6 32 39-70 61-92 (94)
140 PF03961 DUF342: Protein of un 62.5 28 0.00061 41.6 8.9 71 804-874 331-407 (451)
141 PF14662 CCDC155: Coiled-coil 62.2 70 0.0015 33.7 10.4 76 795-870 31-109 (193)
142 COG0711 AtpF F0F1-type ATP syn 62.2 77 0.0017 32.5 10.8 54 796-849 33-86 (161)
143 KOG2059 Ras GTPase-activating 61.9 9.3 0.0002 46.9 4.5 70 2-79 598-670 (800)
144 PRK09174 F0F1 ATP synthase sub 61.7 74 0.0016 34.0 10.9 55 796-850 80-134 (204)
145 TIGR01063 gyrA DNA gyrase, A s 61.7 4.7E+02 0.01 33.9 21.4 121 250-384 543-674 (800)
146 PF08317 Spc7: Spc7 kinetochor 61.7 50 0.0011 37.8 10.3 20 795-814 179-198 (325)
147 KOG0612 Rho-associated, coiled 61.6 34 0.00074 44.7 9.5 46 828-873 487-532 (1317)
148 KOG0291 WD40-repeat-containing 61.5 4.3E+02 0.0094 33.5 25.8 110 256-380 312-424 (893)
149 PF10458 Val_tRNA-synt_C: Valy 61.4 20 0.00043 31.0 5.4 64 806-869 3-66 (66)
150 PHA03098 kelch-like protein; P 61.4 2.6E+02 0.0055 34.0 17.1 17 306-323 335-351 (534)
151 KOG1760 Molecular chaperone Pr 61.3 88 0.0019 30.6 10.0 72 798-869 28-118 (131)
152 PRK13729 conjugal transfer pil 61.0 31 0.00066 41.2 8.4 56 817-872 72-127 (475)
153 PRK14153 heat shock protein Gr 60.7 40 0.00086 35.7 8.5 68 795-863 26-95 (194)
154 KOG4403 Cell surface glycoprot 60.7 50 0.0011 38.5 9.7 70 802-871 304-419 (575)
155 PF05278 PEARLI-4: Arabidopsis 60.2 44 0.00096 37.0 8.9 67 808-874 167-239 (269)
156 TIGR01069 mutS2 MutS2 family p 60.0 41 0.0009 43.1 10.1 31 801-831 526-556 (771)
157 KOG0241 Kinesin-like protein [ 60.0 35 0.00076 43.3 8.9 74 796-872 360-434 (1714)
158 PF08647 BRE1: BRE1 E3 ubiquit 59.9 66 0.0014 30.0 9.0 43 799-841 9-51 (96)
159 PRK14472 F0F1 ATP synthase sub 59.8 87 0.0019 32.4 10.9 57 795-851 44-100 (175)
160 KOG2196 Nuclear porin [Nuclear 59.7 52 0.0011 35.7 9.1 76 794-869 121-205 (254)
161 COG2433 Uncharacterized conser 59.5 43 0.00092 40.9 9.3 23 523-545 246-269 (652)
162 PF11932 DUF3450: Protein of u 59.5 70 0.0015 35.1 10.6 74 801-874 43-116 (251)
163 PF06428 Sec2p: GDP/GTP exchan 59.4 55 0.0012 31.0 8.3 63 810-872 4-67 (100)
164 PF11068 YlqD: YlqD protein; 59.2 88 0.0019 31.1 10.1 63 810-876 23-93 (131)
165 PRK06231 F0F1 ATP synthase sub 59.2 85 0.0019 33.5 10.9 56 795-850 74-129 (205)
166 PF12325 TMF_TATA_bd: TATA ele 59.1 91 0.002 30.5 10.0 70 794-863 38-110 (120)
167 PF07569 Hira: TUP1-like enhan 58.9 47 0.001 35.8 9.0 29 295-323 12-40 (219)
168 PRK14155 heat shock protein Gr 58.6 49 0.0011 35.5 8.8 34 804-837 17-50 (208)
169 PHA02713 hypothetical protein; 58.4 1.8E+02 0.0039 35.9 15.0 20 304-323 341-360 (557)
170 PF07106 TBPIP: Tat binding pr 58.3 25 0.00055 36.1 6.5 34 804-837 76-109 (169)
171 TIGR02338 gimC_beta prefoldin, 57.8 74 0.0016 30.4 9.2 41 803-843 6-46 (110)
172 PF00038 Filament: Intermediat 57.7 73 0.0016 35.9 10.8 69 795-863 63-138 (312)
173 PF08317 Spc7: Spc7 kinetochor 57.4 27 0.00059 39.9 7.3 73 796-868 212-288 (325)
174 PF04728 LPP: Lipoprotein leuc 57.3 48 0.001 28.0 6.6 41 801-841 4-44 (56)
175 cd01220 PH_CDEP Chondrocyte-de 56.7 14 0.0003 34.7 3.9 34 41-74 65-98 (99)
176 PF04841 Vps16_N: Vps16, N-ter 56.5 4E+02 0.0087 31.5 17.3 70 244-321 81-153 (410)
177 PRK06568 F0F1 ATP synthase sub 56.3 1.1E+02 0.0024 31.2 10.6 51 803-853 48-103 (154)
178 PRK14154 heat shock protein Gr 56.3 67 0.0014 34.4 9.3 31 807-837 59-89 (208)
179 PF10046 BLOC1_2: Biogenesis o 56.1 1.2E+02 0.0026 28.5 10.1 72 795-867 23-98 (99)
180 PF13815 Dzip-like_N: Iguana/D 56.0 21 0.00046 34.6 5.2 44 795-838 68-111 (118)
181 PF05082 Rop-like: Rop-like; 56.0 44 0.00096 29.1 6.4 62 807-868 2-63 (66)
182 PF07569 Hira: TUP1-like enhan 55.8 45 0.00098 35.9 8.2 77 468-546 12-93 (219)
183 PRK05759 F0F1 ATP synthase sub 55.8 1.2E+02 0.0025 30.6 10.9 55 796-850 31-85 (156)
184 PF15619 Lebercilin: Ciliary p 55.7 64 0.0014 34.2 9.1 64 808-871 119-186 (194)
185 PF14643 DUF4455: Domain of un 55.4 45 0.00098 40.2 9.0 30 847-876 99-128 (473)
186 TIGR02894 DNA_bind_RsfA transc 55.4 42 0.00091 34.3 7.2 49 795-843 99-147 (161)
187 CHL00118 atpG ATP synthase CF0 55.3 1.2E+02 0.0026 30.7 10.8 55 796-850 49-103 (156)
188 PF09304 Cortex-I_coil: Cortex 55.3 1.6E+02 0.0034 28.3 10.4 57 794-851 31-87 (107)
189 PRK14131 N-acetylneuraminic ac 55.3 2.9E+02 0.0063 32.0 15.5 18 306-323 131-148 (376)
190 smart00787 Spc7 Spc7 kinetocho 55.1 30 0.00064 39.4 6.9 45 796-840 207-251 (312)
191 PRK14148 heat shock protein Gr 55.0 81 0.0018 33.5 9.6 64 799-863 39-102 (195)
192 PRK13455 F0F1 ATP synthase sub 54.7 1.1E+02 0.0025 31.8 10.8 53 797-849 55-107 (184)
193 PRK10869 recombination and rep 54.5 35 0.00077 42.0 8.0 42 829-870 342-388 (553)
194 KOG0804 Cytoplasmic Zn-finger 54.4 65 0.0014 38.0 9.4 25 599-627 228-252 (493)
195 COG0497 RecN ATPase involved i 54.3 51 0.0011 40.3 9.0 46 823-870 344-389 (557)
196 PF04156 IncA: IncA protein; 54.3 91 0.002 32.5 10.1 21 797-817 85-105 (191)
197 PRK15365 type III secretion sy 54.1 76 0.0016 29.6 7.9 82 795-876 11-100 (107)
198 PRK14139 heat shock protein Gr 53.9 80 0.0017 33.2 9.3 61 802-863 34-94 (185)
199 PF06008 Laminin_I: Laminin Do 53.7 91 0.002 34.5 10.4 75 796-870 41-115 (264)
200 cd01254 PH_PLD Phospholipase D 53.5 37 0.0008 33.0 6.5 59 13-71 60-120 (121)
201 PF03310 Cauli_DNA-bind: Cauli 53.5 56 0.0012 31.8 7.4 22 844-865 50-71 (121)
202 KOG0649 WD40 repeat protein [G 53.2 3.5E+02 0.0076 29.8 18.4 79 242-321 61-142 (325)
203 KOG0230 Phosphatidylinositol-4 52.9 5.9 0.00013 52.3 1.0 34 594-629 92-125 (1598)
204 PF01025 GrpE: GrpE; InterPro 52.7 23 0.00049 36.1 5.1 41 800-840 11-51 (165)
205 PF10805 DUF2730: Protein of u 52.7 96 0.0021 29.6 8.9 66 806-871 34-101 (106)
206 PHA02047 phage lambda Rz1-like 52.4 34 0.00074 31.8 5.4 38 795-832 36-73 (101)
207 COG4345 Uncharacterized protei 52.4 56 0.0012 33.4 7.4 50 818-867 122-171 (181)
208 PF09728 Taxilin: Myosin-like 51.9 98 0.0021 35.3 10.4 75 802-876 130-222 (309)
209 COG1340 Uncharacterized archae 51.6 1E+02 0.0022 34.7 10.1 35 836-870 208-242 (294)
210 TIGR03185 DNA_S_dndD DNA sulfu 51.6 63 0.0014 40.6 9.7 38 802-839 430-467 (650)
211 PF08581 Tup_N: Tup N-terminal 51.6 1.9E+02 0.0041 26.2 10.2 69 795-866 6-74 (79)
212 PRK07352 F0F1 ATP synthase sub 51.4 1.5E+02 0.0031 30.7 10.9 56 796-851 46-101 (174)
213 KOG1729 FYVE finger containing 51.4 5.2 0.00011 44.8 0.1 65 592-656 13-81 (288)
214 TIGR02449 conserved hypothetic 51.2 70 0.0015 27.9 6.9 50 795-844 9-58 (65)
215 COG0576 GrpE Molecular chapero 51.1 88 0.0019 33.1 9.2 59 804-863 40-98 (193)
216 PF07851 TMPIT: TMPIT-like pro 50.9 1.2E+02 0.0027 34.7 10.9 76 800-875 4-94 (330)
217 PRK14162 heat shock protein Gr 50.8 97 0.0021 32.9 9.4 61 802-863 41-101 (194)
218 PLN02153 epithiospecifier prot 50.6 4.2E+02 0.0092 30.1 24.3 17 306-323 130-146 (341)
219 PF07851 TMPIT: TMPIT-like pro 50.6 1.2E+02 0.0026 34.7 10.7 35 805-839 2-36 (330)
220 KOG0239 Kinesin (KAR3 subfamil 50.5 85 0.0018 39.6 10.4 77 795-871 236-315 (670)
221 PRK14158 heat shock protein Gr 50.5 1.4E+02 0.0031 31.7 10.6 65 798-863 38-102 (194)
222 PF01093 Clusterin: Clusterin; 50.4 84 0.0018 37.4 9.7 60 804-863 13-80 (436)
223 PRK07353 F0F1 ATP synthase sub 50.4 1.7E+02 0.0037 28.8 10.8 56 796-851 32-87 (140)
224 smart00787 Spc7 Spc7 kinetocho 49.8 1.1E+02 0.0023 35.1 10.2 60 795-854 174-244 (312)
225 TIGR03752 conj_TIGR03752 integ 49.8 81 0.0017 37.7 9.4 48 789-836 48-95 (472)
226 PF09074 Mer2: Mer2; InterPro 49.7 1.9E+02 0.0042 30.5 11.1 60 805-866 35-94 (190)
227 PRK13460 F0F1 ATP synthase sub 49.5 1.6E+02 0.0035 30.4 10.8 56 796-851 43-98 (173)
228 PRK13453 F0F1 ATP synthase sub 49.4 1.6E+02 0.0035 30.4 10.8 55 795-849 44-98 (173)
229 CHL00019 atpF ATP synthase CF0 49.4 1.6E+02 0.0034 30.7 10.9 58 795-852 50-107 (184)
230 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.4 1.8E+02 0.0039 28.7 10.7 31 806-836 16-46 (132)
231 KOG4441 Proteins containing BT 49.1 1.8E+02 0.0039 36.1 12.9 57 483-547 471-530 (571)
232 KOG0649 WD40 repeat protein [G 49.1 2.3E+02 0.0049 31.2 11.7 49 350-399 62-111 (325)
233 PF07106 TBPIP: Tat binding pr 49.1 75 0.0016 32.6 8.3 17 798-814 84-100 (169)
234 TIGR01069 mutS2 MutS2 family p 49.0 77 0.0017 40.7 10.0 30 819-848 541-570 (771)
235 smart00338 BRLZ basic region l 48.9 45 0.00098 28.5 5.6 36 802-837 28-63 (65)
236 PF06364 DUF1068: Protein of u 48.7 70 0.0015 32.8 7.5 18 840-857 118-135 (176)
237 KOG0933 Structural maintenance 48.7 86 0.0019 40.5 9.8 70 806-875 814-883 (1174)
238 PF03962 Mnd1: Mnd1 family; I 48.6 87 0.0019 33.0 8.7 8 858-865 112-119 (188)
239 PRK14141 heat shock protein Gr 48.1 79 0.0017 33.9 8.3 35 805-839 36-70 (209)
240 COG0172 SerS Seryl-tRNA synthe 48.0 95 0.0021 36.9 9.7 71 806-876 35-109 (429)
241 PF10498 IFT57: Intra-flagella 47.9 1E+02 0.0022 35.9 9.9 48 826-873 264-311 (359)
242 PF09730 BicD: Microtubule-ass 47.9 1E+02 0.0022 39.0 10.4 69 806-874 397-465 (717)
243 PRK06569 F0F1 ATP synthase sub 47.9 2E+02 0.0044 29.4 10.8 17 852-868 99-115 (155)
244 PRK13454 F0F1 ATP synthase sub 47.8 1.8E+02 0.0038 30.4 10.8 12 838-849 115-126 (181)
245 TIGR02169 SMC_prok_A chromosom 47.7 75 0.0016 42.4 10.2 7 41-47 23-29 (1164)
246 TIGR00570 cdk7 CDK-activating 47.5 7.6 0.00016 43.7 0.7 53 598-659 2-55 (309)
247 smart00502 BBC B-Box C-termina 47.5 1.9E+02 0.0042 27.2 10.5 47 795-841 9-55 (127)
248 PF10226 DUF2216: Uncharacteri 47.4 3.3E+02 0.0072 28.7 12.3 73 804-876 59-145 (195)
249 smart00340 HALZ homeobox assoc 47.3 27 0.00059 27.5 3.4 28 795-822 7-34 (44)
250 PF13094 CENP-Q: CENP-Q, a CEN 47.3 97 0.0021 31.5 8.7 56 806-861 26-81 (160)
251 KOG2264 Exostosin EXT1L [Signa 47.1 93 0.002 37.6 9.2 74 793-873 79-152 (907)
252 PF07798 DUF1640: Protein of u 47.1 76 0.0017 33.0 8.0 63 798-862 89-159 (177)
253 PRK14473 F0F1 ATP synthase sub 46.8 1.9E+02 0.0042 29.4 10.9 55 796-850 35-89 (164)
254 PF05957 DUF883: Bacterial pro 46.6 2.1E+02 0.0046 26.3 10.1 46 803-848 1-47 (94)
255 PRK14145 heat shock protein Gr 46.3 1.5E+02 0.0032 31.6 9.9 63 800-863 45-107 (196)
256 KOG0976 Rho/Rac1-interacting s 46.1 98 0.0021 38.9 9.5 43 798-840 90-132 (1265)
257 KOG4657 Uncharacterized conser 46.1 65 0.0014 34.6 7.1 47 806-852 92-141 (246)
258 PF07798 DUF1640: Protein of u 46.0 1.6E+02 0.0035 30.5 10.3 56 817-872 76-136 (177)
259 TIGR03185 DNA_S_dndD DNA sulfu 46.0 84 0.0018 39.5 9.6 43 829-871 429-471 (650)
260 PRK14156 heat shock protein Gr 45.3 1.1E+02 0.0023 32.1 8.6 58 805-863 32-89 (177)
261 PF00038 Filament: Intermediat 45.3 1.7E+02 0.0037 32.9 11.2 63 801-863 48-110 (312)
262 COG2433 Uncharacterized conser 45.1 1.4E+02 0.0031 36.6 10.6 9 261-269 27-35 (652)
263 PRK10328 DNA binding protein, 45.0 1.2E+02 0.0026 30.3 8.5 56 816-871 11-67 (134)
264 PF14569 zf-UDP: Zinc-binding 45.0 4.6 0.0001 35.9 -1.2 59 592-659 2-63 (80)
265 PF04871 Uso1_p115_C: Uso1 / p 44.9 1.2E+02 0.0025 30.4 8.5 22 832-853 81-102 (136)
266 PF10211 Ax_dynein_light: Axon 44.9 1.1E+02 0.0024 32.2 8.9 35 805-839 125-159 (189)
267 TIGR03321 alt_F1F0_F0_B altern 44.7 1.8E+02 0.0039 31.8 10.9 12 839-850 90-101 (246)
268 PF05667 DUF812: Protein of un 44.7 1.3E+02 0.0029 37.3 10.8 50 796-845 317-366 (594)
269 PRK14471 F0F1 ATP synthase sub 44.6 2.2E+02 0.0048 29.0 10.9 53 796-848 35-87 (164)
270 PF06120 Phage_HK97_TLTM: Tail 44.6 1.6E+02 0.0035 33.4 10.4 79 795-873 76-172 (301)
271 smart00502 BBC B-Box C-termina 44.6 2.1E+02 0.0045 26.9 10.2 38 805-842 12-49 (127)
272 TIGR02169 SMC_prok_A chromosom 44.5 90 0.0019 41.7 10.2 10 944-953 1058-1067(1164)
273 PF13851 GAS: Growth-arrest sp 44.4 1.4E+02 0.003 31.8 9.6 67 798-868 39-105 (201)
274 PF04340 DUF484: Protein of un 44.4 88 0.0019 33.7 8.3 66 794-867 41-106 (225)
275 COG3883 Uncharacterized protei 44.4 1.9E+02 0.0041 32.2 10.7 58 806-863 44-101 (265)
276 KOG1265 Phospholipase C [Lipid 44.4 30 0.00065 43.7 5.0 74 2-75 47-136 (1189)
277 COG4026 Uncharacterized protei 44.4 1.8E+02 0.0039 31.2 10.0 59 818-876 132-193 (290)
278 PRK00888 ftsB cell division pr 44.4 66 0.0014 30.7 6.4 33 803-835 30-62 (105)
279 PF00430 ATP-synt_B: ATP synth 44.3 1.1E+02 0.0025 29.5 8.4 24 826-849 56-79 (132)
280 KOG3551 Syntrophins (type beta 44.2 27 0.00058 40.2 4.2 45 31-75 227-273 (506)
281 PF05103 DivIVA: DivIVA protei 44.2 4.7 0.0001 39.4 -1.4 16 834-849 73-88 (131)
282 PRK10132 hypothetical protein; 44.1 2.4E+02 0.0053 27.1 10.1 50 797-846 9-59 (108)
283 PRK13461 F0F1 ATP synthase sub 44.1 2.3E+02 0.005 28.7 10.9 22 827-848 63-84 (159)
284 PHA02047 phage lambda Rz1-like 44.0 1.4E+02 0.0031 27.9 8.0 31 813-843 33-63 (101)
285 PRK14151 heat shock protein Gr 43.9 1.3E+02 0.0029 31.4 9.0 31 808-838 28-58 (176)
286 PF10224 DUF2205: Predicted co 43.6 84 0.0018 28.6 6.5 24 799-822 15-38 (80)
287 KOG1587 Cytoplasmic dynein int 43.6 3.6E+02 0.0077 33.4 14.0 24 297-320 352-375 (555)
288 KOG4552 Vitamin-D-receptor int 43.5 1.9E+02 0.004 30.8 9.8 55 806-863 66-120 (272)
289 PF00261 Tropomyosin: Tropomyo 43.4 1.6E+02 0.0036 32.0 10.2 74 795-868 136-209 (237)
290 KOG0278 Serine/threonine kinas 43.2 3.2E+02 0.0069 30.3 11.8 38 285-323 134-173 (334)
291 PRK09973 putative outer membra 43.2 76 0.0016 29.1 6.2 41 801-841 25-65 (85)
292 PF10267 Tmemb_cc2: Predicted 43.2 1.6E+02 0.0035 34.6 10.6 53 795-847 221-277 (395)
293 PF01920 Prefoldin_2: Prefoldi 43.1 85 0.0018 29.1 7.0 35 806-840 4-38 (106)
294 COG3883 Uncharacterized protei 43.0 1.7E+02 0.0037 32.6 10.0 71 802-872 33-103 (265)
295 PF13851 GAS: Growth-arrest sp 42.9 2.5E+02 0.0055 29.9 11.2 80 795-874 88-175 (201)
296 PF07246 Phlebovirus_NSM: Phle 42.8 82 0.0018 34.8 7.5 24 799-822 167-190 (264)
297 PF13870 DUF4201: Domain of un 42.8 1.4E+02 0.0031 30.8 9.3 36 811-846 46-81 (177)
298 PF04111 APG6: Autophagy prote 42.8 2E+02 0.0042 32.9 11.1 45 795-839 45-89 (314)
299 cd00632 Prefoldin_beta Prefold 42.7 1.9E+02 0.004 27.3 9.2 37 805-841 4-40 (105)
300 PF15294 Leu_zip: Leucine zipp 42.6 1.4E+02 0.003 33.4 9.4 45 798-842 130-174 (278)
301 PF06103 DUF948: Bacterial pro 42.4 2.1E+02 0.0046 26.0 9.3 18 806-823 39-56 (90)
302 COG1730 GIM5 Predicted prefold 42.4 52 0.0011 33.3 5.6 53 788-840 89-141 (145)
303 PF01519 DUF16: Protein of unk 42.4 1.2E+02 0.0027 28.7 7.5 44 815-872 54-97 (102)
304 PF12777 MT: Microtubule-bindi 42.2 67 0.0014 37.1 7.3 56 808-863 236-291 (344)
305 PRK14147 heat shock protein Gr 42.2 1.3E+02 0.0029 31.2 8.8 10 934-943 146-155 (172)
306 PRK14474 F0F1 ATP synthase sub 42.1 2.1E+02 0.0046 31.5 10.9 13 939-951 204-216 (250)
307 PF12732 YtxH: YtxH-like prote 42.1 1.2E+02 0.0027 26.6 7.4 29 797-825 23-51 (74)
308 PRK13428 F0F1 ATP synthase sub 42.0 1.7E+02 0.0037 35.1 10.9 17 836-852 83-99 (445)
309 PRK14475 F0F1 ATP synthase sub 42.0 2.5E+02 0.0054 28.8 10.8 11 839-849 95-105 (167)
310 PF06005 DUF904: Protein of un 41.9 80 0.0017 28.0 6.0 23 811-833 8-30 (72)
311 PF12329 TMF_DNA_bd: TATA elem 41.7 1.4E+02 0.003 26.7 7.6 26 815-840 34-59 (74)
312 KOG0646 WD40 repeat protein [G 41.5 6.9E+02 0.015 29.9 16.6 214 183-441 85-304 (476)
313 COG1340 Uncharacterized archae 41.3 1.2E+02 0.0026 34.1 8.7 52 795-846 36-87 (294)
314 PRK13454 F0F1 ATP synthase sub 41.2 2E+02 0.0044 30.0 10.1 21 828-848 90-110 (181)
315 PF05622 HOOK: HOOK protein; 41.2 8.9 0.00019 48.6 0.0 78 795-872 276-379 (713)
316 PF13094 CENP-Q: CENP-Q, a CEN 41.1 1.6E+02 0.0035 29.9 9.2 58 793-850 20-84 (160)
317 PRK15396 murein lipoprotein; P 41.0 1.5E+02 0.0032 26.8 7.6 39 803-841 28-66 (78)
318 PF13935 Ead_Ea22: Ead/Ea22-li 41.0 1.8E+02 0.0039 29.0 9.3 59 804-862 71-132 (139)
319 TIGR01144 ATP_synt_b ATP synth 41.0 2.8E+02 0.0062 27.5 10.8 55 796-850 22-76 (147)
320 TIGR03547 muta_rot_YjhT mutatr 41.0 5.3E+02 0.011 29.2 14.5 15 481-495 315-329 (346)
321 PF08614 ATG16: Autophagy prot 40.9 1.9E+02 0.0041 30.4 10.0 43 796-838 105-147 (194)
322 COG4942 Membrane-bound metallo 40.9 2E+02 0.0044 34.1 10.8 13 935-947 394-406 (420)
323 PF09744 Jnk-SapK_ap_N: JNK_SA 40.8 1.5E+02 0.0032 30.4 8.7 11 804-814 47-57 (158)
324 TIGR01035 hemA glutamyl-tRNA r 40.7 79 0.0017 37.5 7.8 76 796-871 313-400 (417)
325 PF10234 Cluap1: Clusterin-ass 40.5 2.2E+02 0.0047 31.8 10.5 61 794-854 163-233 (267)
326 KOG1587 Cytoplasmic dynein int 40.5 8E+02 0.017 30.4 16.4 23 353-375 353-375 (555)
327 PRK14144 heat shock protein Gr 40.5 1.6E+02 0.0035 31.4 9.1 59 804-863 49-107 (199)
328 KOG1363 Predicted regulator of 39.9 2.1E+02 0.0046 34.4 11.1 18 946-963 387-404 (460)
329 PF03904 DUF334: Domain of unk 39.8 1.6E+02 0.0035 31.8 9.0 79 795-874 45-138 (230)
330 KOG0293 WD40 repeat-containing 39.8 4.2E+02 0.0092 31.2 12.7 182 303-552 322-517 (519)
331 COG1196 Smc Chromosome segrega 39.7 1.2E+02 0.0026 40.9 10.1 36 29-70 10-51 (1163)
332 COG1842 PspA Phage shock prote 39.7 1.4E+02 0.0031 32.4 8.8 56 806-863 44-99 (225)
333 KOG4196 bZIP transcription fac 39.7 62 0.0013 31.8 5.4 39 795-833 76-114 (135)
334 PF05911 DUF869: Plant protein 39.7 1.6E+02 0.0036 37.6 10.6 10 855-864 658-667 (769)
335 PF12495 Vip3A_N: Vegetative i 39.4 2.9E+02 0.0062 26.9 9.7 35 840-874 110-144 (177)
336 PF07200 Mod_r: Modifier of ru 39.3 2.3E+02 0.0049 28.4 9.8 56 795-850 36-91 (150)
337 KOG3433 Protein involved in me 39.3 1.5E+02 0.0032 31.0 8.2 27 798-824 79-105 (203)
338 PF06160 EzrA: Septation ring 39.3 1.1E+02 0.0024 37.7 9.1 26 851-876 189-217 (560)
339 PRK05560 DNA gyrase subunit A; 39.3 9.9E+02 0.021 31.1 21.3 118 250-380 545-672 (805)
340 PF02388 FemAB: FemAB family; 39.2 1E+02 0.0022 36.5 8.3 43 795-841 237-279 (406)
341 KOG4441 Proteins containing BT 39.1 2.9E+02 0.0063 34.2 12.6 22 474-495 509-530 (571)
342 PRK14131 N-acetylneuraminic ac 39.1 6.7E+02 0.014 29.0 17.1 18 361-378 131-148 (376)
343 PRK14163 heat shock protein Gr 39.0 2.9E+02 0.0062 29.9 10.8 33 803-835 43-75 (214)
344 KOG3067 Translin family protei 39.0 2.1E+02 0.0045 30.2 9.2 59 811-876 24-82 (226)
345 PLN02400 cellulose synthase 38.9 17 0.00037 47.3 1.9 57 594-659 31-90 (1085)
346 TIGR03545 conserved hypothetic 38.8 1.3E+02 0.0029 37.0 9.4 14 853-866 244-257 (555)
347 PF07439 DUF1515: Protein of u 38.8 2.2E+02 0.0047 27.3 8.6 68 797-864 5-72 (112)
348 PRK09173 F0F1 ATP synthase sub 38.8 2.3E+02 0.0051 28.6 9.9 24 826-849 59-82 (159)
349 KOG3478 Prefoldin subunit 6, K 38.7 73 0.0016 30.5 5.5 45 795-839 71-115 (120)
350 PLN03229 acetyl-coenzyme A car 38.6 1.2E+02 0.0027 38.2 9.0 30 837-866 671-705 (762)
351 KOG0639 Transducin-like enhanc 38.5 69 0.0015 38.2 6.5 84 793-876 16-133 (705)
352 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.4 2.9E+02 0.0063 27.2 10.2 60 804-863 7-66 (132)
353 PF03920 TLE_N: Groucho/TLE N- 38.2 61 0.0013 32.1 5.1 48 787-834 10-57 (135)
354 KOG4552 Vitamin-D-receptor int 38.2 1.6E+02 0.0034 31.3 8.4 42 805-846 72-113 (272)
355 PF07407 Seadorna_VP6: Seadorn 38.0 91 0.002 35.2 7.0 25 796-820 35-59 (420)
356 PF11488 Lge1: Transcriptional 38.0 62 0.0013 29.2 4.9 47 795-841 32-78 (80)
357 PF07304 SRA1: Steroid recepto 38.0 12 0.00026 38.3 0.4 27 52-78 114-140 (157)
358 PF05529 Bap31: B-cell recepto 37.9 1.8E+02 0.0039 30.5 9.2 16 854-869 173-188 (192)
359 PF06156 DUF972: Protein of un 37.6 53 0.0011 31.4 4.6 47 795-841 10-56 (107)
360 KOG1962 B-cell receptor-associ 37.5 1.3E+02 0.0028 32.4 7.9 56 798-853 149-207 (216)
361 PF09726 Macoilin: Transmembra 37.5 1.3E+02 0.0029 38.1 9.3 42 793-834 538-579 (697)
362 PF12128 DUF3584: Protein of u 37.4 1.4E+02 0.003 40.5 10.2 44 801-844 601-644 (1201)
363 PRK14140 heat shock protein Gr 37.3 2.1E+02 0.0046 30.3 9.4 58 805-863 42-99 (191)
364 COG1196 Smc Chromosome segrega 37.3 1.4E+02 0.0031 40.3 10.2 20 805-824 826-845 (1163)
365 PRK09343 prefoldin subunit bet 37.1 2.4E+02 0.0051 27.5 9.2 45 798-842 5-49 (121)
366 PF04762 IKI3: IKI3 family; I 37.1 1.1E+03 0.024 31.1 18.4 202 295-545 426-636 (928)
367 KOG3564 GTPase-activating prot 37.1 1.6E+02 0.0034 35.2 9.0 71 806-876 27-111 (604)
368 PRK14146 heat shock protein Gr 37.1 1.9E+02 0.004 31.3 9.1 60 803-863 57-116 (215)
369 KOG0317 Predicted E3 ubiquitin 37.1 6.6 0.00014 43.4 -1.8 47 600-660 240-286 (293)
370 KOG4460 Nuclear pore complex, 37.0 2.6E+02 0.0056 33.9 10.8 57 815-871 589-645 (741)
371 KOG0320 Predicted E3 ubiquitin 37.0 6.8 0.00015 40.4 -1.6 49 601-661 133-181 (187)
372 PF05384 DegS: Sensor protein 36.9 2.9E+02 0.0062 28.5 10.0 47 793-839 20-66 (159)
373 PF14282 FlxA: FlxA-like prote 36.8 1.5E+02 0.0031 28.3 7.5 23 799-821 18-40 (106)
374 KOG1003 Actin filament-coating 36.7 1.6E+02 0.0035 31.1 8.2 39 805-843 114-152 (205)
375 PRK10884 SH3 domain-containing 36.6 2.4E+02 0.0051 30.3 9.8 19 795-813 95-113 (206)
376 PF00628 PHD: PHD-finger; Int 36.5 29 0.00062 28.0 2.3 49 602-655 2-50 (51)
377 PF14931 IFT20: Intraflagellar 36.5 3.7E+02 0.008 26.3 10.3 78 795-872 22-99 (120)
378 PHA02562 46 endonuclease subun 36.5 1.9E+02 0.0041 35.4 10.5 51 798-848 172-222 (562)
379 KOG0250 DNA repair protein RAD 36.4 1.6E+02 0.0035 38.5 9.7 70 795-864 736-805 (1074)
380 COG4238 Murein lipoprotein [Ce 36.4 1.4E+02 0.003 26.6 6.4 43 806-852 24-66 (78)
381 TIGR00219 mreC rod shape-deter 36.3 55 0.0012 36.7 5.3 14 806-819 72-85 (283)
382 PHA02713 hypothetical protein; 36.3 1.7E+02 0.0036 36.2 9.9 17 255-271 344-360 (557)
383 COG5420 Uncharacterized conser 36.2 1.9E+02 0.0042 24.9 7.0 60 809-868 8-67 (71)
384 KOG2264 Exostosin EXT1L [Signa 36.1 1E+02 0.0022 37.2 7.4 54 795-849 95-148 (907)
385 PF15409 PH_8: Pleckstrin homo 36.1 49 0.0011 30.6 4.0 35 37-71 53-87 (89)
386 KOG2106 Uncharacterized conser 36.1 8.7E+02 0.019 29.5 22.3 86 249-374 217-303 (626)
387 PF14282 FlxA: FlxA-like prote 36.1 2.8E+02 0.0061 26.4 9.3 55 793-847 19-77 (106)
388 PF07061 Swi5: Swi5; InterPro 36.1 86 0.0019 28.6 5.5 18 805-822 5-22 (83)
389 PF10883 DUF2681: Protein of u 35.9 1.8E+02 0.004 26.9 7.5 53 810-862 26-79 (87)
390 PRK03564 formate dehydrogenase 35.6 23 0.0005 40.1 2.1 74 579-661 192-266 (309)
391 COG1382 GimC Prefoldin, chaper 35.6 66 0.0014 31.4 4.9 41 793-833 70-110 (119)
392 PF13166 AAA_13: AAA domain 35.4 1.6E+02 0.0036 37.1 10.0 79 795-873 372-455 (712)
393 PF04849 HAP1_N: HAP1 N-termin 35.3 2E+02 0.0043 32.7 9.3 82 793-874 160-252 (306)
394 PLN02638 cellulose synthase A 35.2 18 0.0004 46.9 1.4 56 595-659 13-71 (1079)
395 KOG4797 Transcriptional regula 35.0 1.1E+02 0.0024 29.1 6.0 45 806-866 66-110 (123)
396 KOG3335 Predicted coiled-coil 34.9 77 0.0017 32.8 5.5 24 800-823 99-122 (181)
397 PF05508 Ran-binding: RanGTP-b 34.7 1.6E+02 0.0036 33.2 8.5 58 817-875 80-137 (302)
398 TIGR01730 RND_mfp RND family e 34.7 1.4E+02 0.0031 33.2 8.4 72 804-875 61-142 (322)
399 KOG4360 Uncharacterized coiled 34.7 2.4E+02 0.0053 33.9 10.1 43 829-871 241-283 (596)
400 PF13747 DUF4164: Domain of un 34.7 2.9E+02 0.0063 25.5 8.8 52 804-862 36-87 (89)
401 COG3064 TolA Membrane protein 34.6 2.1E+02 0.0046 32.3 9.1 21 835-855 147-167 (387)
402 KOG1029 Endocytic adaptor prot 34.5 94 0.002 39.0 6.9 38 798-835 435-472 (1118)
403 KOG0288 WD40 repeat protein Ti 34.4 1.5E+02 0.0033 34.6 8.3 74 795-868 57-141 (459)
404 PF15035 Rootletin: Ciliary ro 34.4 90 0.002 32.8 6.1 43 796-838 91-133 (182)
405 PF07160 DUF1395: Protein of u 34.2 2.3E+02 0.0049 31.2 9.4 70 807-876 6-80 (243)
406 PRK09039 hypothetical protein; 34.1 2.8E+02 0.0061 32.1 10.7 20 797-816 134-153 (343)
407 PF04899 MbeD_MobD: MbeD/MobD 34.1 77 0.0017 28.0 4.6 39 797-835 32-70 (70)
408 PRK05729 valS valyl-tRNA synth 34.1 78 0.0017 41.3 6.9 64 805-868 809-872 (874)
409 PF09726 Macoilin: Transmembra 34.1 1E+02 0.0022 39.0 7.6 27 788-814 455-481 (697)
410 PHA03098 kelch-like protein; P 33.9 4.3E+02 0.0094 32.0 13.0 17 478-495 381-397 (534)
411 TIGR01843 type_I_hlyD type I s 33.9 2.5E+02 0.0054 32.7 10.6 63 808-870 204-267 (423)
412 PF05911 DUF869: Plant protein 33.8 1.8E+02 0.0038 37.4 9.6 72 800-871 589-660 (769)
413 COG0172 SerS Seryl-tRNA synthe 33.8 1.4E+02 0.003 35.5 8.2 41 803-843 25-65 (429)
414 PRK14157 heat shock protein Gr 33.7 1.9E+02 0.0042 31.4 8.5 34 796-829 87-120 (227)
415 PF08614 ATG16: Autophagy prot 33.6 58 0.0012 34.4 4.7 40 795-834 83-122 (194)
416 PF13713 BRX_N: Transcription 33.6 42 0.00091 26.2 2.6 27 826-852 3-29 (39)
417 KOG0239 Kinesin (KAR3 subfamil 33.6 2E+02 0.0043 36.3 10.0 53 795-847 229-281 (670)
418 TIGR00634 recN DNA repair prot 33.5 1.6E+02 0.0034 36.4 9.1 20 850-869 373-392 (563)
419 KOG1274 WD40 repeat protein [G 33.4 7.9E+02 0.017 31.9 14.6 150 359-547 14-167 (933)
420 TIGR01562 FdhE formate dehydro 33.4 24 0.00051 40.0 1.8 55 599-662 210-267 (305)
421 PF00435 Spectrin: Spectrin re 33.4 2.8E+02 0.006 24.6 8.7 58 795-852 36-100 (105)
422 PF06632 XRCC4: DNA double-str 33.2 3.7E+02 0.0081 31.1 11.3 50 799-849 129-178 (342)
423 TIGR00606 rad50 rad50. This fa 33.2 1.9E+02 0.004 39.7 10.4 78 798-876 742-819 (1311)
424 PLN02943 aminoacyl-tRNA ligase 33.2 84 0.0018 41.4 7.0 66 805-870 887-952 (958)
425 smart00706 TECPR Beta propelle 33.0 79 0.0017 23.4 4.0 25 296-320 8-33 (35)
426 PTZ00419 valyl-tRNA synthetase 32.9 86 0.0019 41.5 7.1 66 805-870 927-992 (995)
427 PF09744 Jnk-SapK_ap_N: JNK_SA 32.8 3.6E+02 0.0079 27.7 10.0 13 804-816 54-66 (158)
428 PF14932 HAUS-augmin3: HAUS au 32.8 3.6E+02 0.0078 29.8 10.9 71 799-869 81-152 (256)
429 COG2811 NtpF Archaeal/vacuolar 32.7 4.6E+02 0.01 25.3 9.8 75 795-871 9-88 (108)
430 PF04100 Vps53_N: Vps53-like, 32.7 1.9E+02 0.0042 33.9 9.2 68 796-863 21-92 (383)
431 PRK06231 F0F1 ATP synthase sub 32.6 4E+02 0.0086 28.5 10.8 11 839-849 133-143 (205)
432 cd01232 PH_TRIO Trio pleckstri 32.6 1.5E+02 0.0032 28.7 6.8 38 37-74 71-113 (114)
433 PF00170 bZIP_1: bZIP transcri 32.6 91 0.002 26.6 4.9 25 808-832 27-51 (64)
434 KOG2391 Vacuolar sorting prote 32.5 8.3E+02 0.018 28.2 15.1 63 798-864 216-278 (365)
435 PHA02790 Kelch-like protein; P 32.4 2.6E+02 0.0057 33.7 10.6 14 310-323 314-327 (480)
436 PF04977 DivIC: Septum formati 32.3 1.5E+02 0.0033 25.9 6.5 34 807-840 17-50 (80)
437 KOG2164 Predicted E3 ubiquitin 32.2 20 0.00043 42.7 0.9 54 599-661 186-239 (513)
438 KOG1850 Myosin-like coiled-coi 32.2 2.6E+02 0.0057 31.7 9.3 37 795-831 132-168 (391)
439 PF05531 NPV_P10: Nucleopolyhe 32.0 1.5E+02 0.0033 26.6 6.1 27 848-874 41-67 (75)
440 KOG0315 G-protein beta subunit 32.0 7.5E+02 0.016 27.5 20.7 243 246-550 11-280 (311)
441 KOG0946 ER-Golgi vesicle-tethe 31.9 2.6E+02 0.0057 35.5 10.2 70 797-866 640-709 (970)
442 PRK10929 putative mechanosensi 31.9 1.3E+02 0.0029 40.0 8.3 11 861-871 270-280 (1109)
443 PF08458 PH_2: Plant pleckstri 31.9 78 0.0017 30.5 4.7 35 41-75 71-105 (110)
444 COG3879 Uncharacterized protei 31.5 1.6E+02 0.0035 32.3 7.5 31 804-834 54-84 (247)
445 KOG0933 Structural maintenance 31.4 2.1E+02 0.0045 37.2 9.4 65 796-860 825-889 (1174)
446 PRK10404 hypothetical protein; 31.4 4.4E+02 0.0095 25.0 9.6 45 802-846 7-52 (101)
447 TIGR02977 phageshock_pspA phag 31.4 1.9E+02 0.0042 31.1 8.3 33 801-833 100-132 (219)
448 KOG2911 Uncharacterized conser 31.4 1.4E+02 0.0031 35.1 7.5 60 793-855 233-292 (439)
449 PF10506 MCC-bdg_PDZ: PDZ doma 31.4 3.7E+02 0.0079 23.7 8.6 50 812-862 17-66 (67)
450 PF13815 Dzip-like_N: Iguana/D 31.4 1.5E+02 0.0032 28.8 6.7 38 798-835 78-115 (118)
451 COG0711 AtpF F0F1-type ATP syn 31.2 4.4E+02 0.0095 26.9 10.5 38 832-869 84-130 (161)
452 cd07592 BAR_Endophilin_A The B 31.2 2.4E+02 0.0052 30.6 8.9 61 806-866 156-217 (223)
453 cd01223 PH_Vav Vav pleckstrin 31.2 79 0.0017 30.7 4.6 35 41-75 77-113 (116)
454 PF11365 DUF3166: Protein of u 31.1 79 0.0017 29.7 4.5 80 795-874 3-87 (96)
455 COG4257 Vgb Streptogramin lyas 31.1 3.1E+02 0.0067 30.8 9.6 139 304-493 62-205 (353)
456 KOG1900 Nuclear pore complex, 30.9 4.2E+02 0.0092 35.6 12.2 36 520-555 242-279 (1311)
457 PRK14154 heat shock protein Gr 30.7 2.6E+02 0.0055 30.1 8.8 39 795-833 61-99 (208)
458 KOG1937 Uncharacterized conser 30.7 2.3E+02 0.0049 33.6 8.9 68 793-863 389-456 (521)
459 PF06428 Sec2p: GDP/GTP exchan 30.7 66 0.0014 30.4 4.0 73 799-871 7-80 (100)
460 PLN02436 cellulose synthase A 30.6 26 0.00057 45.5 1.7 57 594-659 31-90 (1094)
461 PF10482 CtIP_N: Tumour-suppre 30.5 2.1E+02 0.0046 27.6 7.2 27 796-822 3-29 (120)
462 PF07795 DUF1635: Protein of u 30.5 5.5E+02 0.012 27.7 11.1 59 795-863 3-61 (214)
463 PRK10947 global DNA-binding tr 30.4 2.8E+02 0.0062 27.7 8.5 43 829-871 25-67 (135)
464 PF07334 IFP_35_N: Interferon- 30.3 58 0.0013 29.2 3.3 21 795-815 2-22 (76)
465 PF12072 DUF3552: Domain of un 30.3 2.2E+02 0.0047 30.3 8.4 32 830-866 133-164 (201)
466 PF01486 K-box: K-box region; 30.1 4.2E+02 0.0092 24.6 9.4 69 797-867 9-86 (100)
467 PRK12705 hypothetical protein; 29.9 3.2E+02 0.0069 33.4 10.5 36 797-832 99-134 (508)
468 COG3599 DivIVA Cell division i 29.9 3.2E+02 0.0069 29.5 9.4 32 795-826 32-63 (212)
469 smart00706 TECPR Beta propelle 29.9 90 0.002 23.1 3.9 25 469-493 8-33 (35)
470 COG3064 TolA Membrane protein 29.9 2.8E+02 0.006 31.5 9.0 10 944-953 330-339 (387)
471 PF15406 PH_6: Pleckstrin homo 29.8 99 0.0022 29.7 4.9 45 13-71 67-111 (112)
472 TIGR03319 YmdA_YtgF conserved 29.7 1.6E+02 0.0034 36.0 8.1 72 796-872 97-168 (514)
473 TIGR01554 major_cap_HK97 phage 29.7 2.7E+02 0.0058 32.4 9.8 17 805-821 4-20 (378)
474 KOG0288 WD40 repeat protein Ti 29.6 3.8E+02 0.0082 31.6 10.3 39 800-838 27-65 (459)
475 COG4942 Membrane-bound metallo 29.6 3.7E+02 0.0079 32.0 10.5 8 946-953 334-341 (420)
476 KOG0161 Myosin class II heavy 29.6 2.5E+02 0.0055 39.6 10.5 36 838-873 995-1030(1930)
477 PRK14474 F0F1 ATP synthase sub 29.5 4.4E+02 0.0095 29.0 10.8 13 839-851 90-102 (250)
478 PRK12472 hypothetical protein; 29.4 1.7E+02 0.0036 35.1 7.7 47 793-839 204-250 (508)
479 PF14932 HAUS-augmin3: HAUS au 29.4 3.3E+02 0.0072 30.0 9.9 9 861-869 133-141 (256)
480 KOG4005 Transcription factor X 29.3 1.1E+02 0.0023 33.2 5.6 46 794-839 98-143 (292)
481 TIGR02231 conserved hypothetic 29.3 1.8E+02 0.0039 35.5 8.6 35 793-827 71-105 (525)
482 PF08172 CASP_C: CASP C termin 29.3 1.1E+02 0.0024 33.8 6.0 37 793-829 86-122 (248)
483 PF12329 TMF_DNA_bd: TATA elem 29.2 4.1E+02 0.0089 23.6 10.0 46 807-852 12-57 (74)
484 PF14362 DUF4407: Domain of un 29.1 2.7E+02 0.0059 31.3 9.4 57 815-871 136-204 (301)
485 KOG3470 Beta-tubulin folding c 29.1 1.8E+02 0.0038 27.7 6.3 70 793-863 13-82 (107)
486 PF14817 HAUS5: HAUS augmin-li 28.8 3E+02 0.0065 34.6 10.2 74 801-874 80-170 (632)
487 PF14942 Muted: Organelle biog 28.8 5.7E+02 0.012 25.9 10.5 46 827-872 95-145 (145)
488 PRK10636 putative ABC transpor 28.8 2E+02 0.0044 36.1 9.1 29 844-872 600-628 (638)
489 PF08826 DMPK_coil: DMPK coile 28.7 2.5E+02 0.0055 24.2 6.7 41 800-840 11-58 (61)
490 KOG2509 Seryl-tRNA synthetase 28.6 2.1E+02 0.0044 34.0 8.2 45 933-977 258-313 (455)
491 KOG0995 Centromere-associated 28.6 3.2E+02 0.007 33.5 10.0 81 795-875 296-393 (581)
492 PRK03918 chromosome segregatio 28.5 2.6E+02 0.0057 36.3 10.4 77 796-872 189-275 (880)
493 cd00632 Prefoldin_beta Prefold 28.5 1.9E+02 0.0041 27.3 6.7 44 797-840 60-103 (105)
494 PRK10803 tol-pal system protei 28.5 1.2E+02 0.0025 33.7 6.2 43 797-839 58-100 (263)
495 PRK08655 prephenate dehydrogen 28.3 6.8E+02 0.015 29.9 13.0 137 797-983 226-362 (437)
496 PF13863 DUF4200: Domain of un 28.1 5.4E+02 0.012 24.7 10.3 77 796-872 28-104 (126)
497 PRK10698 phage shock protein P 28.0 2.4E+02 0.0052 30.5 8.3 53 803-855 95-147 (222)
498 PRK02224 chromosome segregatio 28.0 2.7E+02 0.0058 36.3 10.3 77 796-872 324-400 (880)
499 PF14712 Snapin_Pallidin: Snap 27.9 4.6E+02 0.01 23.8 9.6 74 798-872 12-87 (92)
500 TIGR00293 prefoldin, archaeal 27.8 1.4E+02 0.0031 28.9 6.0 70 803-872 2-102 (126)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.8e-46 Score=413.77 Aligned_cols=365 Identities=28% Similarity=0.465 Sum_probs=293.3
Q ss_pred EeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCC
Q 001953 195 EDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEES 272 (992)
Q Consensus 195 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~ 272 (992)
.....-.+||+||.|. .++||.|.+. +.+..|...... ....|++++||+.|+++|+.||+||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 3567889999999998 8999999753 335677777655 6689999999999999999999999999999
Q ss_pred CCccCCCCC----------------CCccccEEeee----cCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCC
Q 001953 273 GGRLGHGRE----------------ADVSHPQLIEI----LSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGH 332 (992)
Q Consensus 273 ~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~ 332 (992)
.|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+.. +-++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~--~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRC--GELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccc--ccccc
Confidence 999998651 12456777765 223479999999999999999999999999854 55555
Q ss_pred CCC--cc----ccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccC-CeE
Q 001953 333 GSK--VS----CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRG-LRT 405 (992)
Q Consensus 333 g~~--~~----~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~-~~I 405 (992)
+.. .. ..+|..+. ...|+++++|..|.++||++|+||+||+|.+||||.........+..+..+.. ..|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 522 22 23444443 45799999999999999999999999999999999987777666655554332 237
Q ss_pred EEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCC----CCcccceeeccCCCCCeEEEeecCcEE
Q 001953 406 TRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK----EPRLFPECVAPLIDENICQVACGHDLS 481 (992)
Q Consensus 406 ~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~ht 481 (992)
..|+||.+|++|| +++|++|+||.|-+||||.+.. .....|.....+.+..|..|++|..|+
T Consensus 287 ~~vacG~~h~~al--------------~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 287 KYVACGKDHSLAL--------------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred hhcccCcceEEEE--------------cCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceE
Confidence 8999999999999 8889999999999999999821 123456666666777899999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCC---cceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCC
Q 001953 482 VALTTSGHVYTMGSAAYGQLGVPVADG---LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDK 558 (992)
Q Consensus 482 vaLT~dG~Vy~wG~N~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~ 558 (992)
++|..+|.||.||.+..||||.+.... ..|..+.. ..++.+|+||..|.++.+.+|+||.||+|.+|+||.|+.
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred EEEecCceEEEecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 999999999999999999999977331 23333321 356999999999999999999999999999999999985
Q ss_pred C-CCCcceeeec--cCCCeEEEEEeCCcceeEEEee
Q 001953 559 D-NRNSPTLVDF--LKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 559 ~-~~~~Pt~V~~--l~~~~V~~IacG~~hT~aI~~~ 591 (992)
. +...|+++.. +....++..-||.+++++...+
T Consensus 430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence 5 4556888763 6676788888888877766543
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.8e-41 Score=352.29 Aligned_cols=361 Identities=24% Similarity=0.457 Sum_probs=304.3
Q ss_pred cCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCC--cEEEEEEcCCcEEEEeCCCCCc
Q 001953 198 DSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA--RHAVLVTKQGEIFSWGEESGGR 275 (992)
Q Consensus 198 ~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~--~hs~~Lt~dG~Vy~WG~N~~Gq 275 (992)
..-|++...|... .-+.|--+. ........|.++..+.+.+|+-|+.|. .|+++|+-+|+.|+||+|..||
T Consensus 17 ~~~g~ml~~g~v~-wd~tgkRd~------~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQ 89 (443)
T KOG1427|consen 17 EKGGEMLFCGAVA-WDITGKRDG------AMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQ 89 (443)
T ss_pred cCCccEEEeccch-hhhhccccc------ccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCc
Confidence 3467888888876 555554332 122466789999999999999999774 8999999999999999999999
Q ss_pred cCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCcc-ccccceeccCCCCCcEE
Q 001953 276 LGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVS-CWIPRKVSGNLDGIHLS 354 (992)
Q Consensus 276 LG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~-~~~P~~v~~~l~~~~Iv 354 (992)
||+++......|+.|..|...+|++.|||++|+++||++|+||.+|.|.+ ||||.++... ...|..+. .-+..|+
T Consensus 90 LGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~--GQlGlgn~~~~v~s~~~~~--~~~~~v~ 165 (443)
T KOG1427|consen 90 LGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKY--GQLGLGNAKNEVESTPLPC--VVSDEVT 165 (443)
T ss_pred cCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccc--ccccccccccccccCCCcc--ccCccce
Confidence 99999889999999999999999999999999999999999999999955 9999998644 22232221 2345799
Q ss_pred EEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcC--------------CCcCeEEeeccCCeEEEEEeCCceEEEEEE
Q 001953 355 YISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS--------------TSIPREVETLRGLRTTRVSCGVWHTAAVVV 420 (992)
Q Consensus 355 ~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~--------------~~~P~~V~~l~~~~I~~VacG~~ht~aLve 420 (992)
.|+||..+++.|+..+.|.++|...||||||+.... ...|..|..+.+..|++++||.+||+|+
T Consensus 166 ~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvav-- 243 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAV-- 243 (443)
T ss_pred eeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeee--
Confidence 999999999999999999999999999999985432 3457778888999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCC--CCCeEEEeecCcEEEEEeCCCcEEEEeCCCC
Q 001953 421 ATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLI--DENICQVACGHDLSVALTTSGHVYTMGSAAY 498 (992)
Q Consensus 421 ~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~ 498 (992)
+++++||+||.+.||+|||....+..+|..+..+. +.--.++.||+..++++.+-|.+|.||.+..
T Consensus 244 ------------d~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~ 311 (443)
T KOG1427|consen 244 ------------DKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN 311 (443)
T ss_pred ------------cCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc
Confidence 88899999999999999999999999999887553 3446789999999999999999999997753
Q ss_pred CCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCC--CCCCCcceeeeccCCCeEE
Q 001953 499 GQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGD--KDNRNSPTLVDFLKDKQVK 576 (992)
Q Consensus 499 GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~--~~~~~~Pt~V~~l~~~~V~ 576 (992)
...+..+|..+. .+.+..+..|.||..|.++ ..|.....||...+|.++-|. ......|..|..+.+.+|.
T Consensus 312 -----~ge~~mypkP~~-dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~ 384 (443)
T KOG1427|consen 312 -----NGEDWMYPKPMM-DLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVM 384 (443)
T ss_pred -----CcccccCCCchh-hcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceecc
Confidence 234556787777 4788899999999999875 567779999999887766554 3455679999999999999
Q ss_pred EEEeCCcceeEEEe
Q 001953 577 RVVCGLNFTAIICL 590 (992)
Q Consensus 577 ~IacG~~hT~aI~~ 590 (992)
.|+||..||++|+.
T Consensus 385 ~VamGysHs~vivd 398 (443)
T KOG1427|consen 385 GVAMGYSHSMVIVD 398 (443)
T ss_pred ceeeccceEEEEEc
Confidence 99999999999984
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-39 Score=363.01 Aligned_cols=342 Identities=26% Similarity=0.448 Sum_probs=277.4
Q ss_pred eeeecccceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCc-------ccccccccccccCceeecc----cCCCC
Q 001953 177 FRISLSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHR-------VGYSFSRQTDALLPKAVES----TMALD 245 (992)
Q Consensus 177 ~r~~~s~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~-------~~~~~~~~~~~~~P~~v~~----~~~~~ 245 (992)
+++....++...+||.|+.+|+.||+||+||.|. .|+||.-.+. ....+........|..|+. ...++
T Consensus 99 ~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~ 177 (476)
T COG5184 99 GRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND-DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLR 177 (476)
T ss_pred ccccceeeEEeecCCceEEeecCCCCEEEeccCc-ccccccccccccccccccccccchhhcccCCceeeccccccCChh
Confidence 3678889999999999999999999999999999 9999976520 0111223344567777765 34568
Q ss_pred EEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccc----cEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEc
Q 001953 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSH----PQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321 (992)
Q Consensus 246 I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~----P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG 321 (992)
|++++||+.++++|+++|+||+||....+-++.+...+... ++++... ...|+++++|..|.++|+.+|+||.||
T Consensus 178 vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~G 256 (476)
T COG5184 178 VVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWG 256 (476)
T ss_pred eEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEec
Confidence 99999999999999999999999998888888885444332 4444433 468999999999999999999999999
Q ss_pred CCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCC----cCCCcCeEE
Q 001953 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDH----ISTSIPREV 397 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~----~~~~~P~~V 397 (992)
+|.. ||||.........+..+..++.-..|+.|+||.+|+++|+++|+||+||.|.|||||.+.. .....|...
T Consensus 257 s~qk--gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~ 334 (476)
T COG5184 257 SNQK--GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334 (476)
T ss_pred CCcc--cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccc
Confidence 9955 9999998877666666665555556899999999999999999999999999999999822 124467777
Q ss_pred eeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCC--CCCcccceeeccCCCCCeEEEe
Q 001953 398 ETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGD--KEPRLFPECVAPLIDENICQVA 475 (992)
Q Consensus 398 ~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~I~~Ia 475 (992)
..+.+..|..|++|..|+++| ..+|.||+||.++.+|||+.. ......|+.+. ...++.+|+
T Consensus 335 ~~~~~~~i~~is~ge~H~l~L--------------~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls--~~~~~~~v~ 398 (476)
T COG5184 335 QLLSGVTICSISAGESHSLIL--------------RKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS--VAIKLEQVA 398 (476)
T ss_pred ccCCCceEEEEecCcceEEEE--------------ecCceEEEecCCccccccCcccceeecCCccccc--cccceEEEE
Confidence 778888899999999999999 677999999999999999998 44455555554 346799999
Q ss_pred ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC--CcceeeecC-CcCCCCEEEEEEcCCEEEEEEc
Q 001953 476 CGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD--GLVPTRVDG-EIAESFVEEVACGAYHVAALTS 538 (992)
Q Consensus 476 ~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~--~~~P~~v~~-~l~~~~V~~Ia~G~~Ht~aLt~ 538 (992)
||..|+++.+.+|.||.||.+++|+||++... ...|+.+.. .+....++..-||...+++...
T Consensus 399 ~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 399 CGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred ecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 99999999999999999999999999987643 345666654 2456778888888888877653
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=318.97 Aligned_cols=320 Identities=25% Similarity=0.449 Sum_probs=265.1
Q ss_pred ceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcCC
Q 001953 184 VVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQG 263 (992)
Q Consensus 184 ~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG 263 (992)
.|.+.+...|..+|+-+|+.|.||.|. .||||+|+. .....|..|+.+...+|++-+||.+|+++||++|
T Consensus 60 ~VasG~~aaH~vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG 129 (443)
T KOG1427|consen 60 FVASGCAAAHCVLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTG 129 (443)
T ss_pred EEecccchhhEEEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCC
Confidence 344444455778999999999999999 899999964 4567899999999999999999999999999999
Q ss_pred cEEEEeCCCCCccCCCCCCC-ccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCcc-----
Q 001953 264 EIFSWGEESGGRLGHGREAD-VSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVS----- 337 (992)
Q Consensus 264 ~Vy~WG~N~~GqLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~----- 337 (992)
+||+||.|.+||||.|.... +..|.++. ..+..|..|+||..+++.|+..+.|.++|.-.| ||||++.+..
T Consensus 130 ~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~y--gqlgh~td~~~~~~~ 206 (443)
T KOG1427|consen 130 QVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQY--GQLGHGTDNEFNMKD 206 (443)
T ss_pred cEEEecccccccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCccc--cccccCcchhhcccc
Confidence 99999999999999998553 34444333 334589999999999999999999999999965 9999998643
Q ss_pred ---------ccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeec--cCCeEE
Q 001953 338 ---------CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETL--RGLRTT 406 (992)
Q Consensus 338 ---------~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l--~~~~I~ 406 (992)
+..|..|. ++++.+|++++||.+|+++++++++||+||.+-||.|||........|+.|+.+ .+.--.
T Consensus 207 ~~~~~~~e~~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~ 285 (443)
T KOG1427|consen 207 SSVRLAYEAQPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPP 285 (443)
T ss_pred ccceeeeecCCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCc
Confidence 23344443 578999999999999999999999999999999999999999999999988755 344467
Q ss_pred EEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeC
Q 001953 407 RVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTT 486 (992)
Q Consensus 407 ~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~ 486 (992)
.+.||+..++++ .+-|.||.||.+.. +.+....|..+..+.+.++..+-||..|.++ ..
T Consensus 286 ~~~~g~t~Sl~v--------------~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~a 344 (443)
T KOG1427|consen 286 NAILGYTGSLNV--------------AEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GA 344 (443)
T ss_pred ceeeecccceee--------------cccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cc
Confidence 888999999888 44499999998764 3455678888999999999999999988655 45
Q ss_pred CCcEEEEeCCCCCCCCC-CC--CCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcC
Q 001953 487 SGHVYTMGSAAYGQLGV-PV--ADGLVPTRVDGEIAESFVEEVACGAYHVAALTST 539 (992)
Q Consensus 487 dG~Vy~wG~N~~GQLG~-~~--~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~ 539 (992)
|..+..||...+|.++. ++ .....|..+. .+.+.+|.+|+||..|+++|..+
T Consensus 345 d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 345 DSSCISWGHAQYGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccccccccccccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 56899999998877654 33 3345687776 47888999999999999999754
No 5
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=4.7e-31 Score=215.24 Aligned_cols=55 Identities=58% Similarity=1.087 Sum_probs=54.7
Q ss_pred ceeeeeCCeeEEEEEecCCCCcceeEEEeeccccCHHHHHHHHHHccchhhhhcc
Q 001953 933 ERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYN 987 (992)
Q Consensus 933 ~~~~~~e~gv~~t~~~~~~g~~~~~r~~f~~~~f~~~~a~~ww~~~~~~~~~~~~ 987 (992)
|||||+||||||||+++|||+++||||||||++|+|+||+.||+||++||+++||
T Consensus 5 Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 5 EWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred cEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=259.63 Aligned_cols=306 Identities=22% Similarity=0.322 Sum_probs=230.7
Q ss_pred EeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCC
Q 001953 195 EDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEES 272 (992)
Q Consensus 195 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~ 272 (992)
.+++...|||+||.|. +..||+|+. .....|..|..+ .+.-+.+|+.+..|++++++.|+||++|-+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 4578889999999999 899999975 344667777654 3556788999999999999999999999999
Q ss_pred CCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCcc-ccccceeccC-CCC
Q 001953 273 GGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVS-CWIPRKVSGN-LDG 350 (992)
Q Consensus 273 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~-~~~P~~v~~~-l~~ 350 (992)
+|+||+|+......|++|+.|.+.+|.+|+....|+++||.+|-||+||.|.+ +|||..+... ...|..|... +++
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~--hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGS--HQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcc--cccCCcCchhhcCchhhhhhHhhcc
Confidence 99999999888999999999999999999999999999999999999999954 9999887643 3345444311 222
Q ss_pred C-cEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCc-CCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCC
Q 001953 351 I-HLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-STSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSS 428 (992)
Q Consensus 351 ~-~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~-~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~ 428 (992)
. .|+.|++|..|+++.|+. .||+||.| .||||..+.. .+..|+.+.. ....|..|+|....|+++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~---------- 350 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCL---------- 350 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEE----------
Confidence 2 799999999999999977 69999987 5999987654 4667876633 334799999999999999
Q ss_pred CCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecc----CCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 001953 429 PSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAP----LIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVP 504 (992)
Q Consensus 429 ~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~ 504 (992)
+.++.+|++-+-..-.+.. +...+.-..|.. +.-.++.+..+.....++||+-|+||.|-++..-.-
T Consensus 351 ----~~~~~i~~~ady~~~k~~~--n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~--- 421 (1267)
T KOG0783|consen 351 ----LQNNSIIAFADYNQVKLPF--NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT--- 421 (1267)
T ss_pred ----ecCCcEEEEecccceecCc--chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee---
Confidence 5569999986543322211 111111112211 111345566677778899999999999997642110
Q ss_pred CCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCc
Q 001953 505 VADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSK 541 (992)
Q Consensus 505 ~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~ 541 (992)
.-...|.++ ..|.+|+--.+..+++|.||.
T Consensus 422 -~c~ftp~r~------~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 422 -SCKFTPLRI------FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred -eeeccccee------eehhhhhhccceEEEEecCcc
Confidence 112334333 347788888899999999993
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=3.4e-25 Score=255.85 Aligned_cols=303 Identities=21% Similarity=0.376 Sum_probs=232.2
Q ss_pred EEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecC--CCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCC
Q 001953 258 LVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS--GVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSK 335 (992)
Q Consensus 258 ~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~ 335 (992)
+++...+||+||.|.+.-||+|.......|..|..+. +.-+.+|+.+.+|+++|++.|+||++|-+ ..|.||+|+.
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 5666799999999999999999999999999998774 45578899999999999999999999999 5699999999
Q ss_pred ccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCc-CCCcCeEEeec--cCC-eEEEEEeC
Q 001953 336 VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-STSIPREVETL--RGL-RTTRVSCG 411 (992)
Q Consensus 336 ~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~-~~~~P~~V~~l--~~~-~I~~VacG 411 (992)
....+|++|++ +.+.+|.+|++...|+++||.+|-||+||.|.++|||..+.. ....|.+|... ++. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999997 778899999999999999999999999999999999987553 45567766543 333 69999999
Q ss_pred CceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC-cccceeeccCCCCCeEEEeecCcEEEEEeCCCcE
Q 001953 412 VWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP-RLFPECVAPLIDENICQVACGHDLSVALTTSGHV 490 (992)
Q Consensus 412 ~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~V 490 (992)
..|+++.. +-.||+||-|. ||||..+... ...|..+. .....|..|+|...-|++++++|.+
T Consensus 294 ~~hsVawt---------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i 356 (1267)
T KOG0783|consen 294 KSHSVAWT---------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSI 356 (1267)
T ss_pred cceeeeee---------------cceEEEecccC-ceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcE
Confidence 99999983 27899999986 9999887654 45665553 2456799999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcceeeecC-Cc--CCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcceee
Q 001953 491 YTMGSAAYGQLGVPVADGLVPTRVDG-EI--AESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLV 567 (992)
Q Consensus 491 y~wG~N~~GQLG~~~~~~~~P~~v~~-~l--~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt~V 567 (992)
|++-+-..-.+-....+. .-..|.+ .+ ....|.+..+...-.++||+-|+||.|-.+..- -+.-...|..+
T Consensus 357 ~~~ady~~~k~~~n~~~l-ks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-----~~~c~ftp~r~ 430 (1267)
T KOG0783|consen 357 IAFADYNQVKLPFNVDFL-KSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-----RTSCKFTPLRI 430 (1267)
T ss_pred EEEecccceecCcchhcc-ceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-----eeeeeccccee
Confidence 998754332222222221 1222222 11 223466777777888999999999999865421 11223344444
Q ss_pred eccCCCeEEEEEeCCcceeEEEee
Q 001953 568 DFLKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 568 ~~l~~~~V~~IacG~~hT~aI~~~ 591 (992)
- .|.+|+--.+.-++++.+
T Consensus 431 ~-----~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 431 F-----EISDIAWTANSLILCTRD 449 (1267)
T ss_pred e-----ehhhhhhccceEEEEecC
Confidence 3 345666666665665544
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.1e-20 Score=216.27 Aligned_cols=347 Identities=23% Similarity=0.307 Sum_probs=219.7
Q ss_pred eecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEc--CCcEEEEeCCCC
Q 001953 196 DFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK--QGEIFSWGEESG 273 (992)
Q Consensus 196 ~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~--dG~Vy~WG~N~~ 273 (992)
.-..+|+||.-|.....|..-.|. ......+| .+|++|+.|-+.+.++.- +|-++.-|+..
T Consensus 493 iqa~sGKvYYaGn~t~~Gl~e~G~--------nWmEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k- 555 (3738)
T KOG1428|consen 493 IQARSGKVYYAGNGTRFGLFETGN--------NWMELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDKK- 555 (3738)
T ss_pred hhhcCccEEEecCccEEeEEccCC--------ceEEecCC--------CceEEEEeccchhheeeccCcceEEeccCcc-
Confidence 346899999999976334333332 11222222 469999999877666654 55565555321
Q ss_pred CccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcE
Q 001953 274 GRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHL 353 (992)
Q Consensus 274 GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I 353 (992)
..| .-+++......+|+.|.+...---.+.++|++|..|..+. ........+ ..+++.-|
T Consensus 556 -~~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm----------~~n~SSqml-n~L~~~~i 615 (3738)
T KOG1428|consen 556 -RNG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM----------RVNVSSQML-NGLDNVMI 615 (3738)
T ss_pred -ccc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE----------EecchHHHh-hcccccee
Confidence 111 1111112233467776544433357889999999986632 000111223 34788889
Q ss_pred EEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcC-CCcCeE-------------EeeccCCeEEEEEeCCceEEEEE
Q 001953 354 SYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS-TSIPRE-------------VETLRGLRTTRVSCGVWHTAAVV 419 (992)
Q Consensus 354 v~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~-~~~P~~-------------V~~l~~~~I~~VacG~~ht~aLv 419 (992)
.+++.|..|+++++.+|.||+||.|..||+|.-.... ...|+. -..+.+..-+...||.-...-+
T Consensus 616 sslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gv- 694 (3738)
T KOG1428|consen 616 SSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGV- 694 (3738)
T ss_pred ehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccc-
Confidence 9999999999999999999999999999999743322 222221 1122222333334443221111
Q ss_pred EccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCC--------CC-------------------CCcccceeec---cCCCC
Q 001953 420 VATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHG--------DK-------------------EPRLFPECVA---PLIDE 469 (992)
Q Consensus 420 e~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g--------~~-------------------~~~~~P~~V~---~l~~~ 469 (992)
.........|.+-.+|.++.+.|--| .. ...+-|..|. ...+.
T Consensus 695 -------aC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdv 767 (3738)
T KOG1428|consen 695 -------ACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDV 767 (3738)
T ss_pred -------ccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcce
Confidence 00011122366666776665543211 00 0012233332 12346
Q ss_pred CeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC-cceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcC
Q 001953 470 NICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADG-LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 470 ~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N 548 (992)
++.+|+||..|+++|.+|++||++|+|.+||||.+.... ..|+.|. .+.+..+++|++|++|++++..||+||+||.=
T Consensus 768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~-~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF 846 (3738)
T KOG1428|consen 768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVI-LPSDTVIVQVAAGSNHTILRANDGSVFTFGAF 846 (3738)
T ss_pred eEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEE-cCCCCceEEEecCCCceEEEecCCcEEEeccc
Confidence 789999999999999999999999999999999987654 5788887 46778899999999999999999999999999
Q ss_pred CCCCCCCCCCC--C-CCcceeeeccC---CCeEEEEEeCCcceeEE
Q 001953 549 ANGQLGHGDKD--N-RNSPTLVDFLK---DKQVKRVVCGLNFTAII 588 (992)
Q Consensus 549 ~~GQLG~G~~~--~-~~~Pt~V~~l~---~~~V~~IacG~~hT~aI 588 (992)
..||||..--+ - ...|.+|..+. +....+|.+.++.+++-
T Consensus 847 ~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 847 GKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred cCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceee
Confidence 99999965322 2 23577777553 33567777766665543
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.5e-18 Score=202.21 Aligned_cols=263 Identities=29% Similarity=0.445 Sum_probs=179.0
Q ss_pred CCEEEEEeCCcEEE-EEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcC
Q 001953 244 LDVHNIACGARHAV-LVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD 322 (992)
Q Consensus 244 ~~I~~Ia~G~~hs~-~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 322 (992)
.+|+.| ||..|.+ ++.++|++|..|....- .+ ..-..+..|++.-|.++|.|..|+++|+.+|+||+||-
T Consensus 569 rKIv~v-~~s~~VY~~vSenGkifM~G~~tm~-------~n-~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 569 RKIVHV-CASGHVYGYVSENGKIFMGGLHTMR-------VN-VSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred ceeEEE-eeeeEEEEEEccCCeEEeecceeEE-------ec-chHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 456665 5555654 78999999999963210 00 12345667888899999999999999999999999999
Q ss_pred CCCCCCccCCCCCccccccceeccC-------------CCCCcEEEEEECccee---EEE---ecCCeEEEEecCCCCCC
Q 001953 323 GTYNSGLLGHGSKVSCWIPRKVSGN-------------LDGIHLSYISCGLWHT---AVV---TSAGHLFTFGDGSFGAL 383 (992)
Q Consensus 323 n~~~~GqLG~g~~~~~~~P~~v~~~-------------l~~~~Iv~VacG~~hs---~aL---T~dG~Vy~wG~n~~GqL 383 (992)
| |.+|+|.-.......-.+..+. +.+..-+-..||.-.. ++. --.|.+-.+|.+..+.+
T Consensus 640 N--N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 640 N--NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred C--CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 9 8899997544322111111110 1111112222332111 111 12456666666655443
Q ss_pred CCC--------CC-------------------cCCCcCeEEeec---cCCeEEEEEeCCceEEEEEEccCCCCCCCCCCC
Q 001953 384 GHG--------DH-------------------ISTSIPREVETL---RGLRTTRVSCGVWHTAAVVVATDSSSSSPSGST 433 (992)
Q Consensus 384 G~g--------~~-------------------~~~~~P~~V~~l---~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st 433 (992)
--| .. .....|..|..- -+.++.+|+||.+|++.| .
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL--------------~ 783 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLL--------------A 783 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEE--------------e
Confidence 211 00 011234444322 246899999999999999 5
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC----Cc
Q 001953 434 SCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD----GL 509 (992)
Q Consensus 434 ~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~----~~ 509 (992)
+|++||++|.|-+||||+|+...+..|+.|..+.+..|++|++|.+||+++..||.||++|.-..||||.+.-+ ..
T Consensus 784 sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA 863 (3738)
T KOG1428|consen 784 SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNA 863 (3738)
T ss_pred cCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcccccccccc
Confidence 66999999999999999999999999999999999999999999999999999999999999999999987543 24
Q ss_pred ceeeecCC--cCCCCEEEEEEcCC
Q 001953 510 VPTRVDGE--IAESFVEEVACGAY 531 (992)
Q Consensus 510 ~P~~v~~~--l~~~~V~~Ia~G~~ 531 (992)
.|.++.+. -.+.+...|.+.+.
T Consensus 864 ~Pe~v~~~G~~f~~~A~WIGAdGD 887 (3738)
T KOG1428|consen 864 IPEKVSGFGPGFNAFAGWIGADGD 887 (3738)
T ss_pred CCCcCCCCCccccccceeeccCCC
Confidence 56666542 22344555555443
No 10
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.36 E-value=5.3e-13 Score=128.33 Aligned_cols=71 Identities=25% Similarity=0.591 Sum_probs=63.0
Q ss_pred eeEeeCCC--cceeeccceeeeccCccCcccccCCCC----CCCCceEEEEEcC----CCceeeeCCHHHHHHHHHHHHH
Q 001953 2 LIWYSGKE--ERQLKLNQVSRIIPGQRTATFQRYPRP----EKEYQSFSLIYND----RSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 2 l~w~~~~k--~k~~~~~~v~~v~~G~~t~~f~~~~~~----~~~~~~fs~i~~~----~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|+|.++++ .+.|.|++|++||.|+.++.|++.... ..+++||||||+. ++|||||.|+++|+.|+.||++
T Consensus 35 l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 35 LYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 78998876 455999999999999999999987554 4889999999943 5999999999999999999998
Q ss_pred H
Q 001953 72 L 72 (992)
Q Consensus 72 l 72 (992)
|
T Consensus 115 L 115 (115)
T cd01248 115 L 115 (115)
T ss_pred C
Confidence 6
No 11
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.34 E-value=3.1e-13 Score=102.14 Aligned_cols=32 Identities=66% Similarity=0.836 Sum_probs=30.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 845 EDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 845 ~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
+|||+|||||||||||||+|||+||||||++.
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~~ 32 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGAY 32 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 48999999999999999999999999999765
No 12
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.16 E-value=8.1e-12 Score=108.97 Aligned_cols=68 Identities=38% Similarity=0.886 Sum_probs=48.1
Q ss_pred eccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 591 HKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 591 ~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
+.|+++.+...|..|+..|++.+++|||+.||.+||..|++.+...+.......+++|||+.||..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 46999999999999999999999999999999999999999888776333346799999999999886
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8.1e-13 Score=156.76 Aligned_cols=191 Identities=31% Similarity=0.518 Sum_probs=150.4
Q ss_pred CceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEc
Q 001953 234 LPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTR 313 (992)
Q Consensus 234 ~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~ 313 (992)
.|+.+..+...+|.+|+||.+|+++++..|++|+||.|.+||+|++....-..|.+++.+.+.+..+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 45555555667899999999999999999999999999999999995544444999999999999999999999998875
Q ss_pred CCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCc
Q 001953 314 SGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSI 393 (992)
Q Consensus 314 dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~ 393 (992)
|++++|.+|.++++|....||+||+-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999987778888
Q ss_pred CeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecc---CCCCC
Q 001953 394 PREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAP---LIDEN 470 (992)
Q Consensus 394 P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~---l~~~~ 470 (992)
|..+..+.+..+.+|+||.+|+++++.. -|++|..|.+..|. +--.....+..... -....
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~~-------------l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~ 179 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVPR-------------LGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHR 179 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhhh-------------hcceeecccCCCCC---ceeeccchhhhcccccHHHHHH
Confidence 9888888888999999999999999643 29999999888771 00000000100000 01123
Q ss_pred eEEEeecCcEEEEEeCCC
Q 001953 471 ICQVACGHDLSVALTTSG 488 (992)
Q Consensus 471 I~~Ia~G~~htvaLT~dG 488 (992)
+..+..|.+.+..|...+
T Consensus 180 ~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 180 CSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHHhcCCCceEEEEeec
Confidence 556778888887776554
No 14
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.08 E-value=1e-10 Score=95.52 Aligned_cols=50 Identities=40% Similarity=0.785 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCCCC-CCCCCCCCcceeeeccCCCeEEEEEeCCcceeEE
Q 001953 539 TSKVYTWGKGANGQLG-HGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588 (992)
Q Consensus 539 ~G~Vy~WG~N~~GQLG-~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI 588 (992)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999986
No 15
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.96 E-value=7.6e-10 Score=90.35 Aligned_cols=50 Identities=44% Similarity=0.828 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCccC-CCCCCCccccEEeeecCCCcEEEEEecCcEEEEE
Q 001953 262 QGEIFSWGEESGGRLG-HGREADVSHPQLIEILSGVNVELVACGEYHTCAV 311 (992)
Q Consensus 262 dG~Vy~WG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 311 (992)
||+||+||.|.+|||| .+.......|++|..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 8888889999999999999999999999999987
No 17
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.7e-10 Score=132.94 Aligned_cols=66 Identities=39% Similarity=0.899 Sum_probs=60.7
Q ss_pred ccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccccc
Q 001953 596 SVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDTK 663 (992)
Q Consensus 596 ~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~~ 663 (992)
..|...|..|...|+++.++|||++||.+||..|+++-+.++.++ +.+++|||+.||+.|.+....
T Consensus 162 W~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~G--i~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 162 WIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLG--IEKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred cccccccceeeeeeeeccccccccccchhhccCccccccCccccc--ccccceehhhhHHHhhhcccc
Confidence 356678999999999999999999999999999999999999998 779999999999999997654
No 18
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.89 E-value=3.1e-10 Score=134.62 Aligned_cols=99 Identities=26% Similarity=0.534 Sum_probs=81.6
Q ss_pred eeEeeCCC--cce-eeccceeeeccCccCcccccCCCCCCCCceEEEEEcC--CCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKE--ERQ-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k--~k~-~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~--~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
++|.+..+ +|+ +.|++|++||.|++|+.||+.....++++||||||++ ++|||||.++|+|++||+||++|++..
T Consensus 46 ~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~ 125 (746)
T KOG0169|consen 46 VRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRS 125 (746)
T ss_pred EEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhcc
Confidence 35554444 444 9999999999999999999999999999999999944 599999999999999999999999986
Q ss_pred CCCccccccccCCCCCCCcccccccCCCCccCcccCCCCc
Q 001953 77 THSKWKLGTINCSTSSDSPRARIRKTSPTVTPFDFGDIQG 116 (992)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (992)
...+ ... ++..|+.+.|+.+|...
T Consensus 126 ~~~~------~~~----------~~~~wi~~~~~~ad~~~ 149 (746)
T KOG0169|consen 126 KSMR------QRS----------RREHWIHSIFQEADKNK 149 (746)
T ss_pred chhh------hcc----------hHHHHHHHHHHHHcccc
Confidence 6322 122 56788888888888743
No 19
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=98.87 E-value=3.2e-09 Score=103.36 Aligned_cols=72 Identities=22% Similarity=0.504 Sum_probs=56.7
Q ss_pred CeeEeeCCC---------cceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 1 MLIWYSGKE---------ERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 1 ~l~w~~~~k---------~k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
+|+|.+.++ .+.+.|.+|.+|..|..++.|. .+.....||.|+.++|+|||+|.+++++++|++||++
T Consensus 43 ~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~---~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~ 119 (123)
T PF12814_consen 43 TLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGL---KKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRY 119 (123)
T ss_pred EEEecCCCCCccccccccccceEEeeeEEecCCCCCCccc---cccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHH
Confidence 489998642 2459999999999999999888 1111334444444889999999999999999999999
Q ss_pred HHhc
Q 001953 72 LITR 75 (992)
Q Consensus 72 l~~~ 75 (992)
|+.+
T Consensus 120 L~~~ 123 (123)
T PF12814_consen 120 LLQK 123 (123)
T ss_pred HhhC
Confidence 9863
No 20
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.83 E-value=7.1e-10 Score=121.31 Aligned_cols=67 Identities=37% Similarity=0.857 Sum_probs=60.2
Q ss_pred eeccccccccCcCCCCCC-CCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 590 LHKWVSSVDHSVCSSCHN-PFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~-~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
.+.|+|+.+...|+.|+. .|++..+||||++||.+||..|+.++...+.+ ..+|.|||+.||+.|.+
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~---~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL---STKPIRVCDICFEELEK 226 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc---CCCCceecHHHHHHHhc
Confidence 456999999999999999 99999999999999999999999998555444 57899999999999987
No 21
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-10 Score=137.76 Aligned_cols=181 Identities=26% Similarity=0.415 Sum_probs=139.6
Q ss_pred CCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCC
Q 001953 349 DGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSS 428 (992)
Q Consensus 349 ~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~ 428 (992)
.-.+|.+++||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.|....+|+||..|++++.. .
T Consensus 12 ~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-------~ 84 (850)
T KOG0941|consen 12 NYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-------H 84 (850)
T ss_pred hhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-------c
Confidence 345789999999999999999999999999999999995544445999999999999999999999999822 2
Q ss_pred CCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEe-CCCcEEEEeCCCCC--CCCCCC
Q 001953 429 PSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALT-TSGHVYTMGSAAYG--QLGVPV 505 (992)
Q Consensus 429 ~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT-~dG~Vy~wG~N~~G--QLG~~~ 505 (992)
+..-+..|.+|++|....||+|+.-......|..+..+.+..+.+|+||..|+++.- .-|++|..|.+..| ++-...
T Consensus 85 ~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s 164 (850)
T KOG0941|consen 85 TVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLS 164 (850)
T ss_pred hhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccc
Confidence 222255699999999999999998888888899998888999999999999998764 46899999998877 111000
Q ss_pred CCCcceeeec--CCcCCCCEEEEEEcCCEEEEEEcCC
Q 001953 506 ADGLVPTRVD--GEIAESFVEEVACGAYHVAALTSTS 540 (992)
Q Consensus 506 ~~~~~P~~v~--~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (992)
.+.... +.-....+..+..|.+.+..|...+
T Consensus 165 ----~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 165 ----GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred ----hhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 000000 0011223556788888888776554
No 22
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.76 E-value=4e-09 Score=122.95 Aligned_cols=72 Identities=22% Similarity=0.566 Sum_probs=53.5
Q ss_pred Eeeccccccc-cCcCCCCCCCCCcc-----cccccccCCCceeeccCCCccccccc-----cCCCC-CCCcccChhhHHh
Q 001953 589 CLHKWVSSVD-HSVCSSCHNPFGFR-----RKRHNCYNCGLVFCKACSSRKSLKAA-----LAPSI-NKPYRVCDDCFTK 656 (992)
Q Consensus 589 ~~~kwv~~~d-~s~C~~C~~~Fsf~-----r~rh~C~~CG~v~C~sCss~k~~~~~-----~~~~~-~kp~RvC~~C~~~ 656 (992)
..+.|+++.+ ...|+.|+..|.+. .++||||+||.+||..||++++..+. ..... ..++|||+.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4567888887 57899999999753 58999999999999999998764221 11111 1356899999977
Q ss_pred hhcc
Q 001953 657 LKKT 660 (992)
Q Consensus 657 l~~~ 660 (992)
++..
T Consensus 529 ~EnL 532 (1374)
T PTZ00303 529 YETV 532 (1374)
T ss_pred HHhH
Confidence 6553
No 23
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.71 E-value=2.1e-08 Score=72.88 Aligned_cols=30 Identities=53% Similarity=1.047 Sum_probs=26.1
Q ss_pred EEEEEEcCCEEEEEEcCCcEEEEEcCCCCC
Q 001953 523 VEEVACGAYHVAALTSTSKVYTWGKGANGQ 552 (992)
Q Consensus 523 V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQ 552 (992)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 24
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.68 E-value=3.5e-09 Score=118.32 Aligned_cols=71 Identities=35% Similarity=0.816 Sum_probs=63.0
Q ss_pred ceeEEEeeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccCh-----hhHHh
Q 001953 584 FTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCD-----DCFTK 656 (992)
Q Consensus 584 hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~-----~C~~~ 656 (992)
.++.|.-+.|+++.+...|+.|..+|++.|+||||++||.+||..|+...++.|..+ ..+.+|||. +||..
T Consensus 886 tsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~g--l~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 886 TSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHG--LDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred cccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccc--cccCceecCCcccccceee
Confidence 445566788999999999999999999999999999999999999999888777777 569999999 78765
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.66 E-value=3.1e-08 Score=71.96 Aligned_cols=30 Identities=40% Similarity=0.932 Sum_probs=26.0
Q ss_pred EEEEEeCCcEEEEEEcCCcEEEEeCCCCCc
Q 001953 246 VHNIACGARHAVLVTKQGEIFSWGEESGGR 275 (992)
Q Consensus 246 I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~Gq 275 (992)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 26
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.48 E-value=6.9e-08 Score=80.88 Aligned_cols=55 Identities=44% Similarity=1.037 Sum_probs=48.2
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
...|..|+..|++..++|||+.||.+||.+|+..+...+.+ ...+|+|||+.||+
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35699999999999999999999999999999988766553 25699999999996
No 27
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.78 E-value=2.8e-06 Score=95.45 Aligned_cols=70 Identities=34% Similarity=0.830 Sum_probs=53.7
Q ss_pred ccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCcccccccc--------------------CCCCCCCcccCh
Q 001953 592 KWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAAL--------------------APSINKPYRVCD 651 (992)
Q Consensus 592 kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~--------------------~~~~~kp~RvC~ 651 (992)
.|+.+.+.-.|..|...|+++++|||||-||.++|++|+..-.+...+ -+..+.+.|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 477888888899999999999999999999999999997532211000 112346789999
Q ss_pred hhHHhhhccc
Q 001953 652 DCFTKLKKTD 661 (992)
Q Consensus 652 ~C~~~l~~~~ 661 (992)
.|.+-|-...
T Consensus 253 hCl~~L~~R~ 262 (505)
T KOG1842|consen 253 HCLDNLFRRK 262 (505)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 28
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.71 E-value=1.2e-05 Score=95.48 Aligned_cols=68 Identities=32% Similarity=0.650 Sum_probs=62.0
Q ss_pred cceeeccceeeeccCccCcccccCCC--CCCCCceEEEEEcC----CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 10 ERQLKLNQVSRIIPGQRTATFQRYPR--PEKEYQSFSLIYND----RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 10 ~k~~~~~~v~~v~~G~~t~~f~~~~~--~~~~~~~fs~i~~~----~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|++++|..|+|||+|+.+..|+||.+ ..++.+||.|.||. ++|-|||.+++||+.|+.||++|+...-
T Consensus 61 egai~i~eikeirpgk~skdfdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl 134 (1267)
T KOG1264|consen 61 EGAIDIREIKEIRPGKNSKDFDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTL 134 (1267)
T ss_pred cceeeeeeeeeccCCccchhHHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhc
Confidence 77899999999999999999999975 47778999999954 7999999999999999999999998653
No 29
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.59 E-value=2.5e-05 Score=85.74 Aligned_cols=83 Identities=27% Similarity=0.659 Sum_probs=63.6
Q ss_pred EEEeCCcceeEEEeec------cccccccCcCCCCCCCCC-----------cccccccccCCCceeeccCCCcccccccc
Q 001953 577 RVVCGLNFTAIICLHK------WVSSVDHSVCSSCHNPFG-----------FRRKRHNCYNCGLVFCKACSSRKSLKAAL 639 (992)
Q Consensus 577 ~IacG~~hT~aI~~~k------wv~~~d~s~C~~C~~~Fs-----------f~r~rh~C~~CG~v~C~sCss~k~~~~~~ 639 (992)
-++||.+--+++ .+- .+...+.+.|..|+++|- ++.+.|||+.||..+|..|+++....|.+
T Consensus 255 l~S~~edg~i~~-w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m 333 (404)
T KOG1409|consen 255 LISCGEDGGIVV-WNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM 333 (404)
T ss_pred eeeccCCCeEEE-EeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc
Confidence 367776554444 221 122345677999999983 34468999999999999999999999998
Q ss_pred CCCCCCCcccChhhHHhhhcccc
Q 001953 640 APSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 640 ~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
+ .+...|+|++||..|.-.+.
T Consensus 334 g--~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 334 G--FEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred c--ceeEEEEecccchhhhcCCC
Confidence 8 56899999999999987654
No 30
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.41 E-value=7.1e-05 Score=92.26 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=50.6
Q ss_pred EeeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhh
Q 001953 589 CLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDC 653 (992)
Q Consensus 589 ~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C 653 (992)
+.+.||++....-|+.|.+.|.+..+|||||+||.++|..|++.|.....+. ++.-|||.-|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~---e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS---ESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC---cccccccccc
Confidence 3577999999999999999999999999999999999999999886655553 3444555444
No 31
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00013 Score=81.58 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=57.1
Q ss_pred eccccccccCcCCCCCCCCC-cccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 591 HKWVSSVDHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 591 ~kwv~~~d~s~C~~C~~~Fs-f~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
+.|.+......|++|...|+ +..+|||||.|+..+|-.|+--+.+.+... ...-++|||+.|+..|.
T Consensus 152 p~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~-a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 152 PVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPF-AADPLQRVLDSCAFNLE 219 (473)
T ss_pred ccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCc-ccCCHHHHHhhHhhccC
Confidence 45777788889999999998 889999999999999999998666665543 35689999999999994
No 32
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.14 E-value=0.0066 Score=71.29 Aligned_cols=62 Identities=26% Similarity=0.519 Sum_probs=51.4
Q ss_pred ccccCcCCCCCCCCC-cccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 596 SVDHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 596 ~~d~s~C~~C~~~Fs-f~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
......|..|...|+ .+.+||||..||.++|+.|+..+... ..+..+..|||.+||.....+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l---~~~~s~ssrv~~~~~~~~~~a 474 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKL---SYDNSRSSRVCMDRYLTPSGA 474 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhh---cccccchhhhhhhhccCCCCC
Confidence 455778999999997 88899999999999999999977533 334679999999999866554
No 33
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.98 E-value=0.064 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=46.6
Q ss_pred eeEeeCCCc--c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 2 LIWYSGKEE--R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 2 l~w~~~~k~--k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.|+..++. + .|+|+.|..|..-... +.....+|.||+.+++|-|.|.+.+|++.||..|+.
T Consensus 33 L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~--------~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 33 LSWAKDVQCKKSALIKLAAIKGTEPLSDK--------SFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred EEEECCCCCceeeeEEccceEEEEEcCCc--------ccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 556655442 2 2999999888653332 122236999999999999999999999999999875
No 34
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.02 E-value=1.8 Score=57.30 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=147.3
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccE--------------Eeeec-CC--C---cEEEEEec
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQ--------------LIEIL-SG--V---NVELVACG 304 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~--------------~V~~l-~~--~---~I~~Va~G 304 (992)
+.+.|.....+.++.+.+|+||.--....+ .+...-...|. .|..+ .+ - -+++=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 677888888899999999999986543321 10000001111 11111 11 1 13333578
Q ss_pred CcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCC
Q 001953 305 EYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALG 384 (992)
Q Consensus 305 ~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG 384 (992)
..|+++|.++|.=|.=|+|-- ..|=..+..-...|. .+ ....+ +-.|..-.++|. +|+|+.|-..+.+--.
T Consensus 567 Q~Hs~aLde~~~~~~pGWNLS--d~Lvl~N~~GL~~~~-~p---~~~~~--ldl~r~G~v~L~-~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 567 QRHSHALDEQGSQLQPGWNLS--DALVLDNTRGLPKPP-AP---APHEI--LDLGRAGLVGLQ-DGKIQYWDSTTQCWKD 637 (1774)
T ss_pred ceeeccccccCCccCCCCccc--ceeEeeccCCCCCCC-CC---ChHHh--hccccccceeec-cceEeeecCcchhhhh
Confidence 889999998888888787743 222221111111110 00 00011 224555567776 5999999754433211
Q ss_pred ----------CCCC--cCCCcCeEEeecc-CCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCC
Q 001953 385 ----------HGDH--ISTSIPREVETLR-GLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGH 451 (992)
Q Consensus 385 ----------~g~~--~~~~~P~~V~~l~-~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~ 451 (992)
.|-. ..+..--+|..+. ...--.|+-|.+|.+++... ..-+..|
T Consensus 638 ~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~--------------r~~~e~G--------- 694 (1774)
T PF11725_consen 638 AGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQR--------------RNKVELG--------- 694 (1774)
T ss_pred ccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccc--------------cCCCCCC---------
Confidence 1111 1111111111110 01112333444444443100 0001111
Q ss_pred CCCCCcccceeeccCCCCCeEEEe-ecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcC
Q 001953 452 GDKEPRLFPECVAPLIDENICQVA-CGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA 530 (992)
Q Consensus 452 g~~~~~~~P~~V~~l~~~~I~~Ia-~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~ 530 (992)
..+..+.+..|..++ .+.++.++|++.|++-..= .-| .|..+...-....|+.|++-.
T Consensus 695 ---------~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g----------~p~~l~~~gl~G~ik~l~lD~ 753 (1774)
T PF11725_consen 695 ---------DALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG----------RPVPLSRPGLSGEIKDLALDE 753 (1774)
T ss_pred ---------ccccCCCcCcceeEEEEcCCceEEeccCCcccccc--CCC----------CCccCCCCCCCcchhheeecc
Confidence 123344555566554 5678999999999876533 111 144443322245699999998
Q ss_pred CE-EEEEEcCCcEEE-----EEcCCCCCCCCCCCCCCCcceeeeccCCCeEEEEEeCCcceeEEEee
Q 001953 531 YH-VAALTSTSKVYT-----WGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 531 ~H-t~aLt~~G~Vy~-----WG~N~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~ 591 (992)
.| -+|+|.+|++|. |=.+..| + ......++|..+.+..|..+....+|...+...
T Consensus 754 ~~nL~Alt~~G~Lf~~~k~~WQ~~~~~-----~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 754 KQNLYALTSTGELFRLPKEAWQGNAEG-----D-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred ccceeEecCCCceeecCHHHhhCcccC-----C-ccccCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 75 589999999997 5444433 1 111334455545667788899999999888754
No 35
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=93.59 E-value=0.22 Score=44.39 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=44.5
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHHHH
Q 001953 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 12 ~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~-sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
.|.|+++ .|..+...+. .....+|.|.++.+ .|-+.|.+++|++.|+..|+.++
T Consensus 47 ~i~l~~~-~v~~~~~~~~-------~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 47 SIDLSGI-TVREAPDPDS-------AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEECCcC-EEEeCCCCcc-------CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3888888 7777666543 44568999999776 99999999999999999999875
No 36
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=93.11 E-value=0.31 Score=45.28 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=46.2
Q ss_pred eeEeeCCC---cc-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHH
Q 001953 2 LIWYSGKE---ER-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 2 l~w~~~~k---~k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
|.++.+.+ .+ .|.|+.+..|...+... .-+.......+|.|....|++-|.|.+++|++.||..|+.+|
T Consensus 29 L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 29 LRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 45565543 22 39999888776543221 001112234566665688999999999999999999999875
No 37
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=92.89 E-value=0.41 Score=43.45 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=47.5
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHHHHh
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~-sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
|.|.++ .|+.....+. ........+|.|.+..+ ++-|.|.|++|++.|+..|+.+++
T Consensus 47 i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~~ 104 (104)
T PF00169_consen 47 IPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAIK 104 (104)
T ss_dssp EEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHC
T ss_pred EEecCc-eEEEcCcccc----ccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 899998 8887777653 14456679999999665 999999999999999999998863
No 38
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.38 E-value=0.39 Score=45.32 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=42.8
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHH
Q 001953 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLK 70 (992)
Q Consensus 12 ~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~ 70 (992)
.|.|+++..|+...+.. .......||.|++.+|+.=|.|.|++|++.||.-|.
T Consensus 46 ~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 46 SIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred eEEcccceEEeeccccc------cccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHH
Confidence 49999999998875431 111225799999999999999999999999999875
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=92.31 E-value=0.33 Score=46.11 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=46.1
Q ss_pred eeEeeCCCcc------eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 2 LIWYSGKEER------QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 2 l~w~~~~k~k------~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.+|..+.++ .|.|..|..|..-.... + ........++|.|+..++++-|.|.|++|.+.||..|+.
T Consensus 33 L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~-~--~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 33 LSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEK-N--PPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEECCCcccccCcceeEECCcceEEEEecCCc-C--cccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 5666655431 28888876665422210 0 011123458999999999999999999999999999975
No 40
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.19 E-value=30 Score=41.77 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=50.4
Q ss_pred CEEEEEeCC-cEEEEEEcCCcEEE-EeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEE
Q 001953 245 DVHNIACGA-RHAVLVTKQGEIFS-WGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYT 319 (992)
Q Consensus 245 ~I~~Ia~G~-~hs~~Lt~dG~Vy~-WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vys 319 (992)
++.+|++|- .-..+|+.+|.||. -|-....+.|..-. ++..|.... .++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEE
Confidence 688999999 66779999999764 56555555554322 444443321 28999999999999999999975
No 41
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=92.16 E-value=0.015 Score=68.24 Aligned_cols=65 Identities=26% Similarity=0.718 Sum_probs=50.6
Q ss_pred eecccccc----ccCcCCCC-CCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 590 LHKWVSSV----DHSVCSSC-HNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 590 ~~kwv~~~----d~s~C~~C-~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
+|.|+++. ....|+.| +.-|....++|||++||...|..|..++-....-+ ...|.++||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g--se~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG--SENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc--ccCcccccccccch
Confidence 46777776 56678765 45577777899999999999999999876554444 57899999999954
No 42
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=91.33 E-value=0.15 Score=49.50 Aligned_cols=52 Identities=29% Similarity=0.759 Sum_probs=41.2
Q ss_pred ccCcCCCCCCCCCcc-cccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 598 DHSVCSSCHNPFGFR-RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~-r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
+...|..|..+|+|. ...+.|..|...+|..|... ....+.++|.-|+....
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHHH
Confidence 456799999999966 46789999999999999874 24689999999997643
No 43
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=91.18 E-value=0.49 Score=44.31 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 40 ~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..||.|+-.+|++=|.|.|.+|.+.||..|+.++.
T Consensus 65 ~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 65 PNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 46999988999999999999999999999998875
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.76 E-value=2 Score=37.19 Aligned_cols=62 Identities=29% Similarity=0.271 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
|++.|..+|+.|-+.|++...|=..+.+++.....-=..-.+|..+|..=|+++..+||.|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46778888999999999888888888888887777777777888888888999999988773
No 45
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.43 E-value=0.43 Score=42.03 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=38.1
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.|.+ ..|......+ ....+|.|++.. +.+.|.|.|++|++.|+..|+.
T Consensus 46 i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 46 IPLSG-AEVEESPDDS---------GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred EEcCC-CEEEECCCcC---------CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 56655 4444443332 567999999965 9999999999999999999975
No 46
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.09 E-value=0.59 Score=44.36 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=43.0
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.|+....|..|.... ....||.|+..+|..=|+|.+++|.+-|+..|..
T Consensus 53 IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 53 IDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred EEccceEEEeeccccc---------CCccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999887321 1267999999999999999999999999998864
No 47
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=89.25 E-value=0.23 Score=64.45 Aligned_cols=50 Identities=34% Similarity=0.859 Sum_probs=39.8
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
..+|..|. +...++|||+.||.+||..|.. ...+..|+|..|+.......
T Consensus 5 ~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 5 SNVCYDCD---TSVNRRHHCRVCGRVFCSKCQD----------SPETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred ccchhccc---cccccCCCCcccCceeccccCC----------CCccceeehhhhhhhccccC
Confidence 45677777 6667899999999999999982 23458999999998876643
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=89.00 E-value=1.5 Score=41.72 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=45.8
Q ss_pred eeEeeCCC----cceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHH
Q 001953 2 LIWYSGKE----ERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKAL 72 (992)
Q Consensus 2 l~w~~~~k----~k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l 72 (992)
|.+|...+ ...|.|+.+..|..+...+ .....-...|.|...+|++=|+|.+++|.+.||..|+.|
T Consensus 38 L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 38 LEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 45555433 2239999988776553221 111122356888889999999999999999999999765
No 49
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=88.36 E-value=1.5 Score=41.36 Aligned_cols=35 Identities=14% Similarity=0.556 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 41 ~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
.+|.|+..+|+.=|.|.+++|++.||..|+..|..
T Consensus 68 ~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 68 YGVTLVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred ceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 39999889999999999999999999999998864
No 50
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.76 E-value=19 Score=39.87 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=77.8
Q ss_pred eeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCC---cEEEEEEcCCcEEEEe
Q 001953 193 AHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA---RHAVLVTKQGEIFSWG 269 (992)
Q Consensus 193 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~---~hs~~Lt~dG~Vy~WG 269 (992)
+-.+...||.||.=+... |.+|+-+.+.| .++.+..|. -|.+++..||..|.+-
T Consensus 65 ~dvapapdG~VWft~qg~--gaiGhLdP~tG---------------------ev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--GAIGHLDPATG---------------------EVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cccccCCCCceEEecCcc--ccceecCCCCC---------------------ceEEEecCCCCCCceEEECCCCCeeEec
Confidence 345678899999988876 77887654322 233343332 5777888888888775
Q ss_pred CC-CCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCC
Q 001953 270 EE-SGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNL 348 (992)
Q Consensus 270 ~N-~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l 348 (992)
.. .-++++........-|.+ .+.+-+.-.+.+++..|.||.-|.+-+ +|.|..........|.. .
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP-q--- 187 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP-Q--- 187 (353)
T ss_pred CcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-C---
Confidence 43 223333221111111111 233445667889999999999987732 23322222111111111 1
Q ss_pred CCCcEEEEEECcceeEEEecCCeEEEE
Q 001953 349 DGIHLSYISCGLWHTAVVTSAGHLFTF 375 (992)
Q Consensus 349 ~~~~Iv~VacG~~hs~aLT~dG~Vy~w 375 (992)
-+.-.-+++|-+|.||.-
T Consensus 188 ---------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 ---------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ---------CCCCcceEECCCCcEEEE
Confidence 134467889999999975
No 51
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.64 E-value=1.6 Score=40.50 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHH
Q 001953 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKAL 72 (992)
Q Consensus 40 ~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l 72 (992)
..+|.|+-..|.+-|.|.|++|.+.||..|+..
T Consensus 61 ~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 61 KGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999998754
No 52
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.40 E-value=0.084 Score=62.00 Aligned_cols=65 Identities=25% Similarity=0.516 Sum_probs=52.5
Q ss_pred ceeeccceeeeccCccCcccccCC--CCCC--CCceEEEEEc---CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 11 RQLKLNQVSRIIPGQRTATFQRYP--RPEK--EYQSFSLIYN---DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 11 k~~~~~~v~~v~~G~~t~~f~~~~--~~~~--~~~~fs~i~~---~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
+.+.|.+|+.|..|+.-+-.+.-. .-.+ -+..|||.|. ...|+.||.|+-|.-+|.-||.+|+..
T Consensus 590 ~klpvaDIkav~tgkdcphmkek~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~ 661 (713)
T KOG2999|consen 590 EKLPVADIKAVVTGKDCPHMKEKSALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGS 661 (713)
T ss_pred hhcCHHHHHHHhcCCCCcchhhcchhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCC
Confidence 358999999999999987544331 1122 2699999993 469999999999999999999999965
No 53
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=86.58 E-value=51 Score=36.35 Aligned_cols=63 Identities=24% Similarity=0.428 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCcEEEEcCCCCCCCccCC----CCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEe
Q 001953 305 EYHTCAVTRSGDLYTWGDGTYNSGLLGH----GSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFG 376 (992)
Q Consensus 305 ~~hs~aLT~dG~VysWG~n~~~~GqLG~----g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG 376 (992)
..|++++- ++++|.||-.....|.+.. ......|...+|.+.+.+ +-..|++++-.+ +.|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~gn-~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWGN-QMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEECc-EEEEec
Confidence 45776554 6799999855323444432 233456666667665554 346788888755 799998
No 54
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.78 E-value=5.2 Score=37.93 Aligned_cols=70 Identities=29% Similarity=0.339 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT----------AIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
....+|..|-.+...|..+.+....+.....+++..+. +.+++-.++.++..+-++.+.++|.++...||
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44455555555555555555555555555555554444 34444444444444444555555555555555
No 55
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=85.46 E-value=32 Score=41.53 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=48.5
Q ss_pred cEEEEEecC-cEEEEEEcCCcEE-EEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEE
Q 001953 297 NVELVACGE-YHTCAVTRSGDLY-TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFT 374 (992)
Q Consensus 297 ~I~~Va~G~-~hs~aLT~dG~Vy-sWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~ 374 (992)
.+.+|++|. .-..+|+.+|.|| --|-... .+.|..=. ....|+.. ..++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRq--Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQ--NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEeccccc--CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEE
Confidence 588999999 7888999999976 4454422 33333211 22233322 239999999999999999999985
Q ss_pred E
Q 001953 375 F 375 (992)
Q Consensus 375 w 375 (992)
=
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 3
No 56
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=0.2 Score=62.78 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCC--CCCCCccccEEe-eecCCCcEEEEEecCcEEEEEEcCCcEE
Q 001953 242 MALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGH--GREADVSHPQLI-EILSGVNVELVACGEYHTCAVTRSGDLY 318 (992)
Q Consensus 242 ~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~--g~~~~~~~P~~V-~~l~~~~I~~Va~G~~hs~aLT~dG~Vy 318 (992)
...++..|.+-.+..++|...|++|.|-+...--|-. ....+..+|..- -.+.+.+|+.+++..-..-++|++|+|.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 3456777777778889999999999999765433322 122334444432 2466889999999999999999999999
Q ss_pred EEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCC
Q 001953 319 TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGS 379 (992)
Q Consensus 319 sWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~ 379 (992)
+|=+-. .-|....-.+..-+++ ..+++.+++..|...|.++...+.-+|-||---
T Consensus 452 sWlDEc----gagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 452 SWLDEC----GAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hHHhhh----hhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 996541 1111111111222223 256677888889999999999999999999433
No 57
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.53 E-value=7.3 Score=41.63 Aligned_cols=63 Identities=29% Similarity=0.316 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVE-------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 804 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+-++|+++|+.|.+ +..++-+.++.+.++.+.++++++.-..+=+. ++.|+|++.|-..||++
T Consensus 40 l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 40 LENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV 109 (230)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 44567777777654 45555555666667777777776665555444 56677888877777765
No 58
>PRK15396 murein lipoprotein; Provisional
Probab=84.33 E-value=3.3 Score=37.17 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
+|.+|.+||+.|..+.++...+++..+..++. |+|||++-+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~raN 66 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAARAN 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 67788888888888877777777776655554 678887643
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.24 E-value=6.9 Score=39.33 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=34.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
++.+......|+++..++..+|.+|..+-...+.++.++..+++++-.. .+++++.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~-lee~~~~ 71 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK-LEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Confidence 4555566666666666666666666666666666666666666666533 3344443
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.16 E-value=5.6 Score=39.98 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=26.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
..|...+.-+.+||..|+.++..|....+..+.+++.++.++.+.-.
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555666666666666666666555555555555555543
No 61
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.06 E-value=3.2 Score=35.93 Aligned_cols=45 Identities=31% Similarity=0.449 Sum_probs=33.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+++||.+|..|.+|++.++.+.+.|.+..++...|-..-+..|..
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888888777766665555555544
No 62
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.29 E-value=4.3 Score=38.45 Aligned_cols=9 Identities=67% Similarity=0.715 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001953 858 IKSLTVQLK 866 (992)
Q Consensus 858 iksLt~qlk 866 (992)
|+.|.++++
T Consensus 83 i~~le~~~~ 91 (108)
T PF02403_consen 83 IKELEEQLK 91 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 63
>PRK11637 AmiB activator; Provisional
Probab=82.89 E-value=7 Score=46.39 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=27.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+++..+.+.+|+..++.+..++..+-+..+.+|+.+.++|.++-....+--.+.....+-|+.+.+
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444443333333333333333443333
No 64
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=82.67 E-value=3.7 Score=36.20 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=38.6
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEc---CCCceeeeCCHHHHHHHHHHHHH
Q 001953 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN---DRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 12 ~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~---~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
.+.+..+. |..+.... ....+|.|++. .+.+-|-|.+.+|++.|+..|+-
T Consensus 46 ~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 46 SIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 46677766 65554432 23579999996 68999999999999999998863
No 65
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.63 E-value=4.4 Score=36.31 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=28.8
Q ss_pred CceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 001953 40 YQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 40 ~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
..+|.|...+ +++-|.|.|.+|++.||..|+.
T Consensus 58 ~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 58 DKCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 5799999855 9999999999999999999874
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.23 E-value=14 Score=37.27 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=31.3
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt 862 (992)
+|..+...+..|+.+|..+++.|+.+.+..+.++...+.+...+....+.+..+.|..||-+.-|-
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444555555555555555554444444444444444444444444444443
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.90 E-value=12 Score=41.06 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=54.1
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
.++.+....+.|.+|+..|++|++.|+...++.+..+...++++.+.-....+...-.+.-..++..+.++|++..+.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~ 120 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVEL 120 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666777777777888888888777777777777777777777766655555555555666666677777775553
No 68
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=80.79 E-value=29 Score=38.20 Aligned_cols=62 Identities=19% Similarity=0.358 Sum_probs=32.0
Q ss_pred CcEEEEEEcCCcEEEEeC-CC-CCccCCCC-----CCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCC
Q 001953 253 ARHAVLVTKQGEIFSWGE-ES-GGRLGHGR-----EADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 253 ~~hs~~Lt~dG~Vy~WG~-N~-~GqLG~g~-----~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n 323 (992)
..|+++.- ++++|.||- |+ .|.+..-. ...-..|..--.+.+ +-+.|++++- ....|.+|--
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~-gn~MyiFGGy 148 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVW-GNQMYIFGGY 148 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEE-CcEEEEecCh
Confidence 46776554 788999983 43 34332211 111122332222222 3356887665 4578888743
No 69
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.39 E-value=11 Score=45.72 Aligned_cols=47 Identities=32% Similarity=0.463 Sum_probs=33.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.++|.+.+..|++|+.+|+.+++.|....+....+...++++.++..
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888877766666666555555544443
No 70
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.24 E-value=16 Score=36.89 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=38.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.-.+...++.|...+.+|+.+++.+.++....+.+...++++++.+....+.|.+-..-.|-.|.....
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777777766666666666666666666655555444444433333333333333
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.22 E-value=10 Score=45.82 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=44.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+...+.++.|.++...|+.++..|+.+.+..+.+|+..++..+..-...++......++++-+..|..|+.++..|
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666666666666666666666666555555555555555555555554444
No 72
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.98 E-value=11 Score=41.82 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=30.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
++.++..++.|.+++.+++.+++.++++.+....+++...+.++
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777666666666554
No 73
>PRK11637 AmiB activator; Provisional
Probab=78.77 E-value=11 Score=44.75 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=35.9
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.+++..+.+.+++++++.++++++.+-...+.++..+.++|+++.....+-.++.+..++-|+.|..+++++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555554444444444444445555555444443
No 74
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.37 E-value=11 Score=31.63 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
.|.+|-++|..|..+-.+.+.+++.++..+ ..|++||++.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v----~~ak~EAaRAN 44 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV----QAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344555555555555555566666555433 46778888644
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.28 E-value=7.1 Score=41.10 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001953 856 EVIKSLTVQLK 866 (992)
Q Consensus 856 e~iksLt~qlk 866 (992)
+-++.|.++|+
T Consensus 117 ~~~~~l~~el~ 127 (188)
T PF03962_consen 117 KELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 76
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.82 E-value=12 Score=44.38 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV-----------TAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.+|..|-.+-++|..+.+....|..+..|+++.. .+.+++-.++.++.++-++.|.++|.++..+||-
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555555555442 2222333333333344444444445555555553
No 77
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=77.75 E-value=4.7 Score=37.10 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=29.0
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
...+|.|+..+ +++=|.|.|++|++.||..|+.
T Consensus 62 k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 62 KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 35689999955 9999999999999999999874
No 78
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=76.95 E-value=12 Score=50.09 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred CCCeEEEeecCcEE-EEEeCCCcEEEEeCCCCCC--CCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCC
Q 001953 468 DENICQVACGHDLS-VALTTSGHVYTMGSAAYGQ--LGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540 (992)
Q Consensus 468 ~~~I~~Ia~G~~ht-vaLT~dG~Vy~wG~N~~GQ--LG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (992)
...|+.|++-..|. +|+|.+|+||..=.-..-. +|.-......|..++ .+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP---~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP---DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC---CCCchhhhhcCCCCceEEEecC
Confidence 46799999888755 6889999999754332211 111111233343333 4677999999999888776444
No 79
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=76.58 E-value=7 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=38.6
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.|.++..|.. . + ......+|.|+..+++.=|+|.+++|.+.|+.-|.-
T Consensus 52 I~L~~c~~v~~---~------~-d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 52 IPLESCFNINK---R------A-DAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEccceEEEee---c------c-ccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 89999888752 1 0 112247999999999999999999999999988753
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.47 E-value=25 Score=37.53 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=42.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK----TANEVIKSLTVQLKKMA 869 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ake~iksLt~qlk~~~ 869 (992)
.+++.....|++|+.+|+++..++.+...++..+++..-++.+.......+|-++.+ .++.-+..|.+|+.++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888888888888888777766666665544444444333333333322 23444445555555544
No 81
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=76.17 E-value=15 Score=46.47 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=62.1
Q ss_pred ccchHhhhhhHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQE-IIK-------LRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 795 ~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
..-|.+.-+.|.+| +.+ ++..++.|+.+.++|-.+|+.+++.+++....|..-|+|.+.|+|-=+.|...++
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666 333 2336778999999999999999999999999999999999999999999998877
Q ss_pred HHhhcC
Q 001953 867 KMAEKS 872 (992)
Q Consensus 867 ~~~e~l 872 (992)
.|..++
T Consensus 618 ~vl~~l 623 (717)
T PF10168_consen 618 RVLQLL 623 (717)
T ss_pred HHHHHH
Confidence 776654
No 82
>PLN02320 seryl-tRNA synthetase
Probab=76.14 E-value=11 Score=45.33 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLK---------TVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.||..|-.+-+.+..+.+....|..+..++++ ++.+.+++-.++.++.++-++.+.++|.++..+||=
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN 169 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444544545555555555555544444443 333334444445555555555555566666777653
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.86 E-value=16 Score=38.31 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=38.0
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
+.+++|...|.-|..|..+|+..|+.+..-......++..+.++++.+
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999988888777777777777777776654
No 84
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=1.2 Score=43.34 Aligned_cols=55 Identities=35% Similarity=0.643 Sum_probs=39.9
Q ss_pred ccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 596 SVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 596 ~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
..|...|..|+..---+.--|+|..|...+|.-|-.+-.+. .+|-.+||..|--.
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lr------sNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLR------SNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeec------cCceEEeccCCcHH
Confidence 34556788887642223346999999999999998754333 57899999999743
No 85
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.14 E-value=3.2 Score=33.29 Aligned_cols=29 Identities=48% Similarity=0.500 Sum_probs=22.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKS 823 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (992)
-|.|+..++.|.+|.++|+++|..|+.+.
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888888887664
No 86
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.00 E-value=10 Score=44.93 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=19.6
Q ss_pred CcceeEEE-eec-ccc---CHHHHHHHHH---Hccchhhhhccc
Q 001953 953 GNEVKRVR-FSR-KHF---TEQEAEKWWS---ENGAKICERYNI 988 (992)
Q Consensus 953 ~~~~~r~~-f~~-~~f---~~~~a~~ww~---~~~~~~~~~~~~ 988 (992)
++-|-||| |.. |.| .+.|++.+.+ ++..+|++..++
T Consensus 273 t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lgl 316 (418)
T TIGR00414 273 TKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELEL 316 (418)
T ss_pred CCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677776 665 443 3445555543 445555555444
No 87
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.20 E-value=19 Score=35.20 Aligned_cols=67 Identities=15% Similarity=0.341 Sum_probs=31.4
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
.++.|...-..+.-|+..|+.++..|.+.-+....||=++.+ +.+..++++.-+..|..+|+++-.|
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~-----------~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME-----------ENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554444444444433333 3333344444444555555554443
No 88
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.83 E-value=24 Score=37.25 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 001953 855 NEVIKSLTVQLKKM 868 (992)
Q Consensus 855 ke~iksLt~qlk~~ 868 (992)
|.-++.|.+||+.|
T Consensus 176 k~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 176 KKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHhcC
Confidence 33456666666643
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.72 E-value=20 Score=40.79 Aligned_cols=76 Identities=24% Similarity=0.201 Sum_probs=35.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+.|++..+.|.+|+.+|+.+.+.|.++-+..+.|.++.++.-++.|..-.+-.-..-...+...+|.+|+.-+.++
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444444444444444444444444444333322222233345556666666555444
No 90
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.54 E-value=18 Score=43.02 Aligned_cols=69 Identities=23% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKT----------VTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
.+|.+|..+-++|..+.+....|..+..|+++. ..+.+++-.++.+..++-++.|.+++.++..+||--
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444444444444444444444444444433 333334444444555555555555666666666643
No 91
>PHA01750 hypothetical protein
Probab=73.43 E-value=9 Score=32.85 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
.|+.++|+..|+.|++.++.+-+..+.++++.++++.
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4678999999999999999888888888888888764
No 92
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.73 E-value=9.9 Score=36.97 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 50 RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 50 ~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
+..-|-|.+.+|++.||..|+..+....
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 4556889999999999999999998654
No 93
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.46 E-value=15 Score=44.54 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=64.4
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
.++|+..+.-..+..|+.+|+.++++|+.+-+..........+++.+....+.+--++..-+|--||.|..+++.+.
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888999999999999999999999999899999999988877777777777777888888777665443
No 94
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.15 E-value=11 Score=44.60 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=20.7
Q ss_pred CcceeEEE-eec-ccc---CHHHHHHHHH---Hccchhhhhccc
Q 001953 953 GNEVKRVR-FSR-KHF---TEQEAEKWWS---ENGAKICERYNI 988 (992)
Q Consensus 953 ~~~~~r~~-f~~-~~f---~~~~a~~ww~---~~~~~~~~~~~~ 988 (992)
++-|-||| |.+ +.| .+.||+.|-+ ++..+|++..++
T Consensus 271 ~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 271 TRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLEL 314 (425)
T ss_pred CCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46677776 666 444 4456666654 345555555544
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.64 E-value=54 Score=41.62 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred cCcEEEEEEcCCc-EEEEcCCCCCCCccCCCCCc-cccccceeccCCCCCcEEEEEECcceeEEEecCC--eEEEEecCC
Q 001953 304 GEYHTCAVTRSGD-LYTWGDGTYNSGLLGHGSKV-SCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAG--HLFTFGDGS 379 (992)
Q Consensus 304 G~~hs~aLT~dG~-VysWG~n~~~~GqLG~g~~~-~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG--~Vy~wG~n~ 379 (992)
++...++++.+|+ |+++|.+ |..-.-... ....|..+. ..+..|..|+|-..|.+.-++++ .+|.++...
T Consensus 14 ~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3455566666765 5666655 222211111 124555553 25778999999999999988888 567777654
Q ss_pred C
Q 001953 380 F 380 (992)
Q Consensus 380 ~ 380 (992)
.
T Consensus 88 ~ 88 (933)
T KOG1274|consen 88 E 88 (933)
T ss_pred c
Confidence 4
No 96
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.47 E-value=53 Score=28.89 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.|..||.-||.+...|..+.+..+.++..+.+.=..+...+.+=-..+.--|+-+.+|..+|++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999888888777777666665555555566677777777764
No 97
>PLN02153 epithiospecifier protein
Probab=71.01 E-value=1.9e+02 Score=32.87 Aligned_cols=18 Identities=22% Similarity=0.601 Sum_probs=12.5
Q ss_pred cceeEEEecCCeEEEEecC
Q 001953 360 LWHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 360 ~~hs~aLT~dG~Vy~wG~n 378 (992)
..|++++ .+++||.+|--
T Consensus 129 ~~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeeEEEE-ECCEEEEECCc
Confidence 3566665 46799999843
No 98
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.83 E-value=1.2 Score=56.29 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=85.9
Q ss_pred CCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCC--CCCcCCCcCeE-EeeccCCeEEEEEeCCceEEEEEEccCCC
Q 001953 349 DGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGH--GDHISTSIPRE-VETLRGLRTTRVSCGVWHTAAVVVATDSS 425 (992)
Q Consensus 349 ~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~--g~~~~~~~P~~-V~~l~~~~I~~VacG~~ht~aLve~~~~~ 425 (992)
++.+++.|.+-.+..++|..+|++|.|-+...--|-. .-..+...|.. ...+.+.+|+.+++..-..-++
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~------- 444 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIA------- 444 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeee-------
Confidence 3467888888888999999999999998766543322 11222333432 2245677899998876665555
Q ss_pred CCCCCCCCCCCeEEEEeCCCCCCCCCCCC--CCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCC
Q 001953 426 SSSPSGSTSCGKLFTWGDGDKGRLGHGDK--EPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQ 500 (992)
Q Consensus 426 ~~~~~~st~dG~Vy~WG~n~~GQLG~g~~--~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQ 500 (992)
|++|+|.+|=+-- |.+-. -....-+.+. ..+..+++..|-..|+++...++-+|-||---+-+
T Consensus 445 -------T~nghlasWlDEc----gagV~fkLa~ea~Tkie-ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 445 -------TENGHLASWLDEC----GAGVAFKLAHEAQTKIE-EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred -------ecCCchhhHHhhh----hhhhhhhhhhhhhhhhh-hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 7789999994321 11110 0011112222 23456777788889999999999999999755444
No 99
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.69 E-value=85 Score=41.66 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=108.7
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCC--CCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCC
Q 001953 257 VLVTKQGEIFSWGEESGGRLGHGR--EADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGS 334 (992)
Q Consensus 257 ~~Lt~dG~Vy~WG~N~~GqLG~g~--~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~ 334 (992)
+-+|.|.++|.|-.++.+++-.=+ ...+..-.++..-+|.-+-.| .|.++|..-=+|+..|-.. +....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 578999999999998876654211 112222222222223322222 4889999888998888442 122222222
Q ss_pred CccccccceeccCCCCCcEEEEEECcceeEEEe-cCCeEEEE----ecCCCCCCCCC-----CCcCCCcCeEEeec--cC
Q 001953 335 KVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT-SAGHLFTF----GDGSFGALGHG-----DHISTSIPREVETL--RG 402 (992)
Q Consensus 335 ~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT-~dG~Vy~w----G~n~~GqLG~g-----~~~~~~~P~~V~~l--~~ 402 (992)
.... +.-+.++..|..|.+-.+-=++++ .||.||-+ +++-|++--+. .......|..+... ..
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 2111 222344555666664433333333 55554433 23333331110 11122345522221 24
Q ss_pred CeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC---------cccceeeccCCCCCeEE
Q 001953 403 LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP---------RLFPECVAPLIDENICQ 473 (992)
Q Consensus 403 ~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~I~~ 473 (992)
..|.+|+-+....+..+. ++.|.|=+|--+..|+-+.-.... ...-..+....-..|++
T Consensus 243 dpI~qi~ID~SR~IlY~l------------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~Ivs 310 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL------------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVS 310 (1311)
T ss_pred CcceeeEeccccceeeee------------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEE
Confidence 479999999888877754 445777777655555433211000 00000011111133555
Q ss_pred Ee------ecCcEEEEEeCCCc-EEEEeCC
Q 001953 474 VA------CGHDLSVALTTSGH-VYTMGSA 496 (992)
Q Consensus 474 Ia------~G~~htvaLT~dG~-Vy~wG~N 496 (992)
|. .-+-|.+|+|..|. +|.-|+.
T Consensus 311 I~~l~~~es~~l~LvA~ts~GvRlYfs~s~ 340 (1311)
T KOG1900|consen 311 ISPLSASESNDLHLVAITSTGVRLYFSTSS 340 (1311)
T ss_pred ecccCcccccceeEEEEecCCeEEEEeccC
Confidence 53 34569999999995 7776653
No 100
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.61 E-value=21 Score=36.56 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
..|..++.+|.+|+++|.+.|.--++||+.+..
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998876543
No 101
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=70.46 E-value=43 Score=34.54 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
.+-|.++.+...+++......-+++.+.-++-+.+++.++++.++...-|++|+++-
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666666665555555566666777777777777777777777754
No 102
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.25 E-value=9.7 Score=35.67 Aligned_cols=60 Identities=28% Similarity=0.656 Sum_probs=40.1
Q ss_pred CeeEeeCCC--cce--eeccceeeeccCccCcccccCCCCCCCCceEEEEE-------cC-CCceeeeCCHHHHHHHHHH
Q 001953 1 MLIWYSGKE--ERQ--LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY-------ND-RSLDLICKDKDEAEVWLVG 68 (992)
Q Consensus 1 ~l~w~~~~k--~k~--~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~-------~~-~sLdLi~~~~~ea~~W~~g 68 (992)
||-|+.-.. |+. |.|+.+ +||..... |- . ...||.|.+ .+ ++|+|.|.+.||.+.|-..
T Consensus 30 ~L~wykd~eeKE~kyilpLdnL-k~Rdve~g--f~-----s-k~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkas 100 (110)
T cd01256 30 SLSWYKDDEEKEKKYMLPLDGL-KLRDIEGG--FM-----S-RNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKAS 100 (110)
T ss_pred eeeeecccccccccceeecccc-EEEeeccc--cc-----C-CCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHH
Confidence 578988754 443 788765 34444321 21 1 127888876 22 6999999999999999765
Q ss_pred H
Q 001953 69 L 69 (992)
Q Consensus 69 L 69 (992)
+
T Consensus 101 f 101 (110)
T cd01256 101 F 101 (110)
T ss_pred H
Confidence 3
No 103
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=70.10 E-value=8 Score=36.28 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.9
Q ss_pred CCCceEEEEEcC---CCceeeeCCHHHHHHHHHHHHHHH
Q 001953 38 KEYQSFSLIYND---RSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 38 ~~~~~fs~i~~~---~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
.+.++|.|+-.+ +++.|-|+++|+=+.|+.-|+.+|
T Consensus 57 ~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 57 GEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 357999999843 699999999999999999999886
No 104
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.69 E-value=22 Score=41.37 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=62.2
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE--------------KCKTANEVI 858 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ake~i 858 (992)
..++.+..+...|..|+..||+-+..|+.+|+.++.+.|++.+.|+.+..+..+|-. ..+|..|+|
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 346788888889999999999999999999999999999999999999988887754 345666777
Q ss_pred HHHHHHHHHH
Q 001953 859 KSLTVQLKKM 868 (992)
Q Consensus 859 ksLt~qlk~~ 868 (992)
.-|-.||--+
T Consensus 377 eelrkelehl 386 (502)
T KOG0982|consen 377 EELRKELEHL 386 (502)
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 105
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=69.47 E-value=49 Score=32.02 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=49.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
.+..+.+.++-..|+.+-..|......-+.=|+....+...|...|.+|......-..-|+-|+++|..|-..
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~ 96 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555566666666777788888888888888888889998888776543
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.16 E-value=28 Score=38.01 Aligned_cols=79 Identities=28% Similarity=0.340 Sum_probs=53.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
++.+++.-..|+.|+..|...++.|+.+......++.+..+.+-++-.-+.+|.+ .+.+....+-.|--++.++|||
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~---~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA---EIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCH
Confidence 4556666666666666666666666666666666666666666666554444443 4566677788888889999999
Q ss_pred CC
Q 001953 875 GA 876 (992)
Q Consensus 875 ~~ 876 (992)
+.
T Consensus 175 el 176 (239)
T COG1579 175 EL 176 (239)
T ss_pred HH
Confidence 85
No 107
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.15 E-value=19 Score=40.55 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
.+||.+|.+|+-.|.++|.+...|-+++.+. ..++||.=..|+++|+|+-+|
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~--------------L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQH--------------LQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444443333333 345677777788888887766
No 108
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.79 E-value=32 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=11.8
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q 001953 850 KCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 850 ~~~~ake~iksLt~qlk~~ 868 (992)
-+.+.++=|++|-.+|+++
T Consensus 54 e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 54 ERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 3456677778887777653
No 109
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=68.42 E-value=23 Score=37.20 Aligned_cols=51 Identities=29% Similarity=0.504 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHhhc
Q 001953 818 ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV---QLKKMAEK 871 (992)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~---qlk~~~e~ 871 (992)
.+..++.+.+.++.....++++|-.+|-+=-.|+ .||++.|+- +|-.--+|
T Consensus 50 v~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~---eEVarkL~iiE~dLE~~eer 103 (205)
T KOG1003|consen 50 VIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY---EEVARKLVIIEGELERAEER 103 (205)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHH
Confidence 3334444455556666666666654432222233 456666553 44443343
No 110
>PRK09039 hypothetical protein; Validated
Probab=68.27 E-value=24 Score=40.73 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=51.0
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEV-IKSLTV 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~-iksLt~ 863 (992)
.+.++..-....-+|..|+.|++.|+.+....+.+|..++++.+++-....+--++..+|+.- ++.|..
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566778888888888888888888888888888888887777777777777644 555554
No 111
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.95 E-value=35 Score=35.62 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 817 EELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
..+.++......++...++.....-...++..+|.++.++.+|.+..++.++-
T Consensus 98 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 98 DQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333434333333334444444555555555555555544443
No 112
>PLN02678 seryl-tRNA synthetase
Probab=67.76 E-value=26 Score=41.86 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred ccchHhhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMND-S-LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 795 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
..++++++- . +..||.+|-.+-++|..+.+....|.....++|...... +.+-.++.+.-|+-|+.|.++++++.
T Consensus 19 ~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 19 RESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555542 1 346777777777777777777777777777776542211 11222334455555666655554443
Q ss_pred h
Q 001953 870 E 870 (992)
Q Consensus 870 e 870 (992)
+
T Consensus 99 ~ 99 (448)
T PLN02678 99 A 99 (448)
T ss_pred H
Confidence 3
No 113
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.08 E-value=40 Score=38.04 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=46.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
.+.|...--.+.+|-++|+.|++++.++|.+.++|.|.+.+.+.||.+.-.+-.+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667899999999999999999999999999999999999876554443
No 114
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=67.00 E-value=8.4 Score=35.52 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=28.2
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLK 70 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~ 70 (992)
+.+.|.|+-.. +++-|.|.|++|.+.||..|+
T Consensus 57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence 45889997754 999999999999999999986
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=66.72 E-value=33 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 001953 855 NEVIKSLTVQLKKMAE 870 (992)
Q Consensus 855 ke~iksLt~qlk~~~e 870 (992)
|--+.-|..||+++.|
T Consensus 125 ~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 125 KSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 4445667778888754
No 116
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.56 E-value=47 Score=36.15 Aligned_cols=75 Identities=27% Similarity=0.368 Sum_probs=51.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
+....+...+..++.+...+++.+..++...+.+|......++..=.....-+.|-....+-|+.|+.+||+.--
T Consensus 116 ~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 116 EEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777777788877777777777777755433333344456667778888888887543
No 117
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.38 E-value=25 Score=41.19 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=26.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
+.+..+.|.+|...+++..+.+.+++.+...+++++++++++.
T Consensus 359 ~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 359 LITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555566666777777777777777777766554
No 118
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.30 E-value=30 Score=36.24 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=48.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT----------------SKQLKTVTAIAEDEAEKCKTA 854 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a 854 (992)
.+........+.+-|++|+++|...+++|...+.++... ...|+++.....||-.||..=
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L 79 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEEL 79 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHH
Confidence 345566677788999999999999999999999988432 356888888888988888873
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.22 E-value=27 Score=44.28 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=28.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
++-|+..-+.+.+|+.+|+.+.+.|++.++....+++++.++-+..+.
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666667777777766666666666655554444333
No 120
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=65.41 E-value=3.1 Score=42.31 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=21.7
Q ss_pred cCHHHHHHHHHHccchhhhhcccCCC
Q 001953 966 FTEQEAEKWWSENGAKICERYNIRSS 991 (992)
Q Consensus 966 f~~~~a~~ww~~~~~~~~~~~~~~~~ 991 (992)
|+...==.||.+|+++|.++|+++..
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~ 76 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEP 76 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCC
Confidence 35666678999999999999998854
No 121
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=65.33 E-value=73 Score=32.52 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=20.6
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
|.++.+....++..-...-+++.+.-+..+.+|+.+.++.++.+..|++++.
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333333333333444444444444444444444433
No 122
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=65.31 E-value=21 Score=32.59 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKT 853 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (992)
+|.+|.+||+.|..+.++.+.+++.++..+ .-|++||++-+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa----~aAk~EA~RAN~ 66 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQI----YAAKSEANRANT 66 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 788888999999988888888887765544 456678776543
No 123
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=65.24 E-value=19 Score=33.84 Aligned_cols=50 Identities=16% Similarity=0.400 Sum_probs=34.7
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~-sLdLi~~~~~ea~~W~~gL~~ 71 (992)
+.|..+ .|++-+.+- .....||.|+...+ +--.+|.+.+|++.||..|++
T Consensus 47 i~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 47 IDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred eecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 455555 555544431 12248999988554 666888888999999999975
No 124
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.19 E-value=19 Score=32.27 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=27.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
+++||.+|..|.+|+..+++.-+.|.++-++...|-+.-+..+.
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666666666666665555555554444
No 125
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.90 E-value=31 Score=44.30 Aligned_cols=13 Identities=31% Similarity=0.240 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHH
Q 001953 58 DKDEAEVWLVGLK 70 (992)
Q Consensus 58 ~~~ea~~W~~gL~ 70 (992)
|.++.+.|..-..
T Consensus 39 ~~~~i~~~l~~~~ 51 (782)
T PRK00409 39 DFEEVEELLEETD 51 (782)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555544443
No 126
>PRK14161 heat shock protein GrpE; Provisional
Probab=64.37 E-value=35 Score=35.67 Aligned_cols=69 Identities=28% Similarity=0.330 Sum_probs=47.6
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+.+-+.+.-+.+.+|+..|++++++++.+.....++++-+++..+.-...+++- +.-+.+++++-.+.+
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~-a~~~~~~~LLpv~Dn 81 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY-AIATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 345566666777888888888888888888888888888887777666554443 334556666655554
No 127
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.35 E-value=36 Score=38.62 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.2
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
..++||++.|.|+.-.++|++..+.|+++.....+.+.-++++++||
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666663
No 128
>smart00030 CLb CLUSTERIN Beta chain.
Probab=64.24 E-value=51 Score=34.78 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001953 803 DSLNQEIIKLRA---QVEELTSKSEHLEAE----LERTSKQLKTVTAIAEDEAEKCKTANEVI 858 (992)
Q Consensus 803 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ake~i 858 (992)
.-+++||++.-. |++.++.+.+++... |++++++-++|..+|.|.-+|.+++.+|-
T Consensus 18 kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 18 KYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888765 777888887776654 68889999999999999999999988765
No 129
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.21 E-value=21 Score=44.30 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=34.1
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
..++.+.+.+|+..-|+.+|+++++++.++....--|-|++..+++
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3478999999999999999999988887776655555554444443
No 130
>PRK14143 heat shock protein GrpE; Provisional
Probab=64.07 E-value=43 Score=36.60 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=43.6
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+.....+.|.+|+..|++++++|+.+.-...++++.++|..+.-...+++ .+..+.++++|-.|.+
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 34555566777788888888887777777777777777776655544444 4455666666665554
No 131
>PRK14160 heat shock protein GrpE; Provisional
Probab=64.03 E-value=41 Score=36.06 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=49.8
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.....|++..+.|.+++.+|+++++.|+.+.....++.+-+++..+.-...+..-| ..+.+++++-.|.+
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlDn 123 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLDN 123 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 34667788888888899999999988888888888888888777766665554433 44555555544443
No 132
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=63.64 E-value=31 Score=28.95 Aligned_cols=41 Identities=15% Similarity=0.454 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
+.|+.||.++...+..++.+-++...++++.++.++..+.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999999999988888888899999888888765
No 133
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.59 E-value=20 Score=31.58 Aligned_cols=44 Identities=34% Similarity=0.509 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (992)
...+++|+..|+++++.|+++-+..+.++++++.--+..-.+|+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34667778888888888877777777777777444333333443
No 134
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.56 E-value=39 Score=40.25 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-------hhHHHHHHHHHHHHHHhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE-KCK-------TANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~ake~iksLt~qlk~~~e 870 (992)
|+++|.+|-+.|+++-+.+....+...++|+.|..-++.|.. ... ..+..|-.|+.||+.++.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333333333333333333333344455555544333332 122 344556666666666654
No 135
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.41 E-value=9.8 Score=35.68 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 40 ~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+|.|.-.++++-|.|++++|-+-|+..|+..|.
T Consensus 66 ~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 58899988889999999999999999999998875
No 136
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.14 E-value=71 Score=32.08 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=39.2
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
|+|+..-+.|..|+..++..-..+...++...++++.++.++...+.-..+--.-..+...--+.|+.+|.+|-+|
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555444444444444444445555555555444
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=63.02 E-value=73 Score=30.40 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=24.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+..|...+.|..|-..|++.+..|.++.......+..++.+|.++.
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554444
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.85 E-value=47 Score=36.89 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=51.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--------HH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ--------LK 866 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~q--------lk 866 (992)
++.++...+.+.+++.+++.++.++++.-+.....+.+.....++......+.-...+..++.++.|..+ +.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888777777555555554444444444444444444444433 33
Q ss_pred HHhhcCCCC
Q 001953 867 KMAEKSPEG 875 (992)
Q Consensus 867 ~~~e~lp~~ 875 (992)
++++-.|-.
T Consensus 152 ~l~~ifpI~ 160 (302)
T PF10186_consen 152 ELSEIFPIE 160 (302)
T ss_pred HHHHHhCce
Confidence 455545663
No 139
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.61 E-value=8.5 Score=34.66 Aligned_cols=32 Identities=13% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCceeeeCCHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYNDRSLDLICKDKDEAEVWLVGLK 70 (992)
Q Consensus 39 ~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~ 70 (992)
...+|.|+..++++=|.|.+.+|++.||..|+
T Consensus 61 ~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 61 RRFCFEVISPTKTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred CceEEEEEcCCcEEEEECCCHHHHHHHHHHHh
Confidence 35799999988999999999999999999986
No 140
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.54 E-value=28 Score=41.63 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ------LKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.|.+++++|+.+++.+..+.+..+..++..++. ..+...+...-..+.+..++.++.|.++|++|.+.|=.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444431 12223333344444456667777777777777766543
No 141
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.25 E-value=70 Score=33.67 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=58.0
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEH---LEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
++.+...|..|..|+..|+.|.+++.+..+. .+.|++.++.-+++.=...+--.+.++-...-..+|++++-.+-|
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888889999999988887654443 477888888888777777777778888888888888887655543
No 142
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.18 E-value=77 Score=32.47 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=25.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
+-+..+.+....++.+-+..-+++.+.-+..+.++..++++..+....|++++.
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~ 86 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAE 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433444444444445555555555555555555444
No 143
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=61.91 E-value=9.3 Score=46.86 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=52.6
Q ss_pred eeEeeCCCcc--e-eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 001953 2 LIWYSGKEER--Q-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGTH 78 (992)
Q Consensus 2 l~w~~~~k~k--~-~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~~ 78 (992)
|.|..++..+ . |+|++|..|-.=. -..+.--.+|-|||-+|+|-|=|++-+||+.|+..|+.....+++
T Consensus 598 Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 598 LSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred eEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 5676665422 2 8888887653211 123556789999998899999999999999999999998877665
Q ss_pred C
Q 001953 79 S 79 (992)
Q Consensus 79 ~ 79 (992)
.
T Consensus 670 r 670 (800)
T KOG2059|consen 670 R 670 (800)
T ss_pred h
Confidence 3
No 144
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.70 E-value=74 Score=34.00 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=25.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
+-|.++.+....++..-...-+++.+.-++.+.+|..++++.++...-|++++.+
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333333333333334555555555555555555555443
No 145
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=61.70 E-value=4.7e+02 Score=33.93 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=65.5
Q ss_pred EeCCcEEEEEEcCCcEEEEeCCCC---CccCCCCCCCccccEEeeecCCCcEEEEEec-----CcEEEEEEcCCcEEEEc
Q 001953 250 ACGARHAVLVTKQGEIFSWGEESG---GRLGHGREADVSHPQLIEILSGVNVELVACG-----EYHTCAVTRSGDLYTWG 321 (992)
Q Consensus 250 a~G~~hs~~Lt~dG~Vy~WG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysWG 321 (992)
+....+.+++|+.|++|..-...- +..+.|..- ...+....+.+|+.+.+- ....+++|.+|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i----~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPI----VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCH----HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 445577889999999999943221 122222211 112333456677776652 23678899999877654
Q ss_pred CCCCCC-CccCCCCCccccccceeccCCCCCcEEEEE--ECcceeEEEecCCeEEEEecCCCCCCC
Q 001953 322 DGTYNS-GLLGHGSKVSCWIPRKVSGNLDGIHLSYIS--CGLWHTAVVTSAGHLFTFGDGSFGALG 384 (992)
Q Consensus 322 ~n~~~~-GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Va--cG~~hs~aLT~dG~Vy~wG~n~~GqLG 384 (992)
...|.. ...|. ......++..++.+. ....+.+++|++|++|.+--..--..|
T Consensus 619 l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 332210 00010 000011233454443 334568999999999999755443333
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.66 E-value=50 Score=37.80 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=10.4
Q ss_pred ccchHhhhhhHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRA 814 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~ 814 (992)
...++...+.|..|+.+|++
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555
No 147
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=61.55 E-value=34 Score=44.71 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 828 AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
.+...+++.++++..++.+|.+|.+-++.-++.|..+|++.-.+.-
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577889999999999999999999999999999998865543
No 148
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.48 E-value=4.3e+02 Score=33.46 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=61.2
Q ss_pred EEEEEcCCcEEEEeCCCCCccCCCC-CCCccccEEeeecCCCcEEEEEecCcEEEEEE--cCCcEEEEcCCCCCCCccCC
Q 001953 256 AVLVTKQGEIFSWGEESGGRLGHGR-EADVSHPQLIEILSGVNVELVACGEYHTCAVT--RSGDLYTWGDGTYNSGLLGH 332 (992)
Q Consensus 256 s~~Lt~dG~Vy~WG~N~~GqLG~g~-~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~VysWG~n~~~~GqLG~ 332 (992)
++++...|+-.++|...-|||+.=. ..+....++-..+ ..|..++-...-.++.| +||+|-.|-... |.
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gf--- 383 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GF--- 383 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEEeccC---ce---
Confidence 4456666999999988888887521 0111111111111 14555555555444443 688888885442 11
Q ss_pred CCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCC
Q 001953 333 GSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSF 380 (992)
Q Consensus 333 g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~ 380 (992)
-.........+...+++..-.+..+-..=||.|-.|-...|
T Consensus 384 -------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 384 -------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred -------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 11112223344556677777777777778999999985543
No 149
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.44 E-value=20 Score=31.01 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
..|+.+|+.+.+.+....+..+.+|..-.=.-+---.+...|-+|....++-|..|..+|+.|.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666665555555444444333210000011123456677788888888888888888763
No 150
>PHA03098 kelch-like protein; Provisional
Probab=61.37 E-value=2.6e+02 Score=34.02 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=11.7
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 001953 306 YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 306 ~hs~aLT~dG~VysWG~n 323 (992)
.|+++ .-+|+||.+|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 35444 447999999864
No 151
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=88 Score=30.55 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=55.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---H----------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLE---A----------------ELERTSKQLKTVTAIAEDEAEKCKTANEVI 858 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ake~i 858 (992)
+..+-+.|.+||+..+.|+++|..-|.+.+ . .+..++.+|++.-..+-.+-+...+-+|.|
T Consensus 28 l~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I 107 (131)
T KOG1760|consen 28 LNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESI 107 (131)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888877665433 2 356788888888888888888899999999
Q ss_pred HHHHHHHHHHh
Q 001953 859 KSLTVQLKKMA 869 (992)
Q Consensus 859 ksLt~qlk~~~ 869 (992)
++--++||.|-
T Consensus 108 ~~~m~~LK~~L 118 (131)
T KOG1760|consen 108 SARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 152
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.97 E-value=31 Score=41.16 Aligned_cols=56 Identities=13% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 817 EELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
++-..+.+++|.+|.+.++.+++......+..+|.+.-.+.|+.|.+|++.+..++
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 33444555566666666666666666677777788888889999999997766663
No 153
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.74 E-value=40 Score=35.74 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=46.6
Q ss_pred ccchHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 795 IDDSKQM--NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 795 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+.||.. ++.+.+|+.+|++|+++|+.+....-++.+-+++..+.-...+++-+- -+.+++++-.+++
T Consensus 26 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 95 (194)
T PRK14153 26 AEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTDN 95 (194)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4455543 456788888888888888888888888888887777766555444433 3666666666554
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.70 E-value=50 Score=38.47 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH---HHHHHHHHHHHHHHhh---------
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHL-----------------EAELERTSKQ---LKTVTAIAEDEAEKCK--------- 852 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~--------- 852 (992)
|+...+|+.+||.+.+.++...+.. |.|+|-+.+| .+.-+..|+|+++|.|
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gt 383 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGT 383 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchhee
Confidence 4444457777777666555443322 3333333333 3334566778888765
Q ss_pred -----------------hhHHHHHHHHHHHHHHhhc
Q 001953 853 -----------------TANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 853 -----------------~ake~iksLt~qlk~~~e~ 871 (992)
+||.-+.-+|+.|+|--+|
T Consensus 384 l~vahgsslDdVD~kIleak~al~evtt~lrErl~R 419 (575)
T KOG4403|consen 384 LHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHR 419 (575)
T ss_pred eeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766555
No 155
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.16 E-value=44 Score=37.00 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 808 EIIKLRAQVEELTSK------SEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
+|.=||.++.++.+. .+..+.+.+...++++..-..+..+-++.+.+..-+|-+.+++.+|++||-.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556554444433 5566777888888888888888888888888888888899999999988754
No 156
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.05 E-value=41 Score=43.07 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELE 831 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (992)
..+...+|+.+++++++.++++.+++..+++
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555554444444333
No 157
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.00 E-value=35 Score=43.30 Aligned_cols=74 Identities=28% Similarity=0.353 Sum_probs=54.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEE-LTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
|.--..+..|.+||.+|+.|++. -..+..+.+.+++++.|-|+|.. ..=-+|.++..++-+.+.+||..|.--+
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~---~twEEkl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEIT---VTWEEKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777889999999999887 34455666666777776666644 2223588888999999999999887654
No 158
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=59.91 E-value=66 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=23.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+..+.+...+.++..++..+.++-...+.|+.++.++...|+
T Consensus 9 ~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~m 51 (96)
T PF08647_consen 9 EQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAM 51 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555544
No 159
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=59.78 E-value=87 Score=32.37 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=30.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
.+-|.+..+....++...+..-+++.+.-++-+.+++.++++.++....|++++++.
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444455556666666666655555555543
No 160
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=59.67 E-value=52 Score=35.71 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=57.5
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER---------TSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ake~iksLt~q 864 (992)
.++.++..+..|.||+.=.-+|-++|+......|.+++. ...+-+.+..+|.+--+..|-+-|=+|.++.+
T Consensus 121 e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~ 200 (254)
T KOG2196|consen 121 EVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKS 200 (254)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367888999999999999999989998888887777554 44555666667776667777777777777777
Q ss_pred HHHHh
Q 001953 865 LKKMA 869 (992)
Q Consensus 865 lk~~~ 869 (992)
|.+|.
T Consensus 201 lN~~~ 205 (254)
T KOG2196|consen 201 LNTMS 205 (254)
T ss_pred HHhcc
Confidence 77764
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.46 E-value=43 Score=40.88 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=13.4
Q ss_pred EEEEEEcCCEE-EEEEcCCcEEEE
Q 001953 523 VEEVACGAYHV-AALTSTSKVYTW 545 (992)
Q Consensus 523 V~~Ia~G~~Ht-~aLt~~G~Vy~W 545 (992)
|+.|--|-... ++|+-||+|.--
T Consensus 246 IVGIDPGiTtgiAvldldGevl~~ 269 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLDL 269 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEee
Confidence 55666665443 455667776543
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.45 E-value=70 Score=35.13 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
+.+.+.+|-+.|..+++.|..+-+..+...+..++.+...-....+-..+-...++.=+-|+-.|.+|.+.|-.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333333344444444444555556667666644
No 163
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.36 E-value=55 Score=30.99 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 810 IKLRAQVEELTSKSEHLEAELERTSKQL-KTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
..-+++...+.+..+..+.||+.+...| +||-.|++++---+-+++.=...|..||++...+|
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666666 77777776665444444444455555555544443
No 164
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=59.23 E-value=88 Score=31.07 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 810 IKLRAQVEELTSKSEHLEAELERTSKQLK----TVT----AIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
..|++|+..+..+|++.+.+.++.-+.++ ... .....|-++. .|.++-|+.||+.+ ++||-|.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r---~e~k~~l~~ql~qv-~~L~lgs 93 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER---LEQKNQLLQQLEQV-QKLELGS 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHS-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hcCCCCC
Confidence 35667777788888888877777766655 333 3333333333 46677788888876 6788873
No 165
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=59.17 E-value=85 Score=33.50 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=31.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
.+-|.++.+...+++...+..-+++.+.-++-+.+++.++++.++....|.+|+++
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~ 129 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQ 129 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444555555555556666666666666666665553
No 166
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.14 E-value=91 Score=30.51 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=50.9
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEEL---TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
....|....+.+.+||.+|-.+.+.+ ..+......+++..+++...+..+..|=+++...-+-=|.-|.+
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 35667778888899999888866544 45566677888899999888888888877776655544444443
No 167
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.89 E-value=47 Score=35.78 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=25.1
Q ss_pred CCcEEEEEecCcEEEEEEcCCcEEEEcCC
Q 001953 295 GVNVELVACGEYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 295 ~~~I~~Va~G~~hs~aLT~dG~VysWG~n 323 (992)
+.++..+.|-..+.++||.+|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 45788899999999999999999999544
No 168
>PRK14155 heat shock protein GrpE; Provisional
Probab=58.55 E-value=49 Score=35.47 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
.|.+|+.+|++++++|+.+.....++++.++|..
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 169
>PHA02713 hypothetical protein; Provisional
Probab=58.36 E-value=1.8e+02 Score=35.89 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=13.8
Q ss_pred cCcEEEEEEcCCcEEEEcCC
Q 001953 304 GEYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 304 G~~hs~aLT~dG~VysWG~n 323 (992)
...+..+..-+|+||.+|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34444555668999999964
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.30 E-value=25 Score=36.13 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
.|..|+..|++|+.+|+..+...+.|+..+...+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566677777777777777777777777666554
No 171
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.83 E-value=74 Score=30.36 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
+.+..+.++++.+++.+.++....+.++++.+..+++.-.+
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566777788888888888888888888877777765443
No 172
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.69 E-value=73 Score=35.90 Aligned_cols=69 Identities=30% Similarity=0.343 Sum_probs=48.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+|.+...+..|..|+.+|+..++.++.+++.. +.++..+++.+++++..-.+--.+..+.+|-|.+|..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 56666667777777777777777777666654 4556666777777776666666677777777777766
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.39 E-value=27 Score=39.91 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=31.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh-hHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKT-ANEVIKSLTVQLKKM 868 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-ake~iksLt~qlk~~ 868 (992)
..+|..-..+..+|..++.++.+|+.+.+..+.++++.+.+..++.+. |...-++|+- ...-|+.|.++++.|
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344444444455555444444455555554444444444443333322 2222223331 233344555555544
No 174
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.33 E-value=48 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
+-+.|..+|+.|.++|..|.+.-.....+++.++..+..|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777776666555544
No 175
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=56.71 E-value=14 Score=34.75 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 41 ~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
.||.|.-.++++-|.|.+++|-+.|+..|+.-|.
T Consensus 65 ~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 65 HCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 6999887889999999999999999999988774
No 176
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.48 E-value=4e+02 Score=31.50 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=41.2
Q ss_pred CCEEEEEe-CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEee--ecCCCcEEEEEecCcEEEEEEcCCcEEEE
Q 001953 244 LDVHNIAC-GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIE--ILSGVNVELVACGEYHTCAVTRSGDLYTW 320 (992)
Q Consensus 244 ~~I~~Ia~-G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hs~aLT~dG~VysW 320 (992)
.+|+.+.- ...+.++|+++|.|+.+- -.|.. ....+..+. ...+.+|-.+..+..-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 35666653 356788999999988873 33332 111111111 11122344446666778899999999987
Q ss_pred c
Q 001953 321 G 321 (992)
Q Consensus 321 G 321 (992)
=
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 177
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=56.35 E-value=1.1e+02 Score=31.23 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhh
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAEL-----ERTSKQLKTVTAIAEDEAEKCKT 853 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 853 (992)
+.+.+|..+|.++.+...+.++.+-.++ +..++.++++...|.+|+++.++
T Consensus 48 e~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~ 103 (154)
T PRK06568 48 EKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKS 103 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776665555555544443 23445556666777777766544
No 178
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.32 E-value=67 Score=34.44 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+|+..|++++++|+.+.....++++.++|..
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433444444333333
No 179
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.14 E-value=1.2e+02 Score=28.50 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=44.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTA----NEVIKSLTVQLKK 867 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----ke~iksLt~qlk~ 867 (992)
.+-|.++|+....+..++...+.+|...++..+.+-+..+..++..-.+ .+.-++..++ -+.+|.|.+++|.
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I-e~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQI-EEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4557788888888888888888888887777776655555555544432 1222222222 3445555555554
No 180
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.04 E-value=21 Score=34.57 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=22.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
++=|-...+.|..++..|+.+++.+.++++....++++.+++++
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555554444444444433
No 181
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=56.04 E-value=44 Score=29.12 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.|+..|+++|+.|..++-+.-.+|.-+.+-|=-.|...-+.|+|+=.|=.-+..+-.+|+.+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777777666666566666666666666655555556666654
No 182
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.81 E-value=45 Score=35.91 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeec----CCcCCCCEEEEEEcCCEE-EEEEcCCcE
Q 001953 468 DENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVD----GEIAESFVEEVACGAYHV-AALTSTSKV 542 (992)
Q Consensus 468 ~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~----~~l~~~~V~~Ia~G~~Ht-~aLt~~G~V 542 (992)
+.++..+.|-..+-++||.+|.+|+|--... .+-.+. ....|..-. .......|+.+....... ++..++|..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~-k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~ 89 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKG-KAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDS 89 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCC-eeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCE
Confidence 4678889999999999999999999975442 111111 011121110 002345566666554433 445577888
Q ss_pred EEEE
Q 001953 543 YTWG 546 (992)
Q Consensus 543 y~WG 546 (992)
|+|=
T Consensus 90 y~y~ 93 (219)
T PF07569_consen 90 YSYS 93 (219)
T ss_pred EEec
Confidence 8873
No 183
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=55.78 E-value=1.2e+02 Score=30.55 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=26.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
+-|.++.+....++...+..-+.+.+..++.+.++..++++.++...-|.+|+.+
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~ 85 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQ 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444444444444444455555555555555555555443
No 184
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.65 E-value=64 Score=34.19 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT----AIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
|..+|..++..++.+.+..+.+++.+.++++-+. .++.-|-.|.++|.+-++.|..+++.+--+
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777777766443 445566777777777777777766655443
No 185
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=55.44 E-value=45 Score=40.23 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=27.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 847 EAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 847 ~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
|.++++..+.+++.+++.|.++|-.|||+.
T Consensus 99 E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv 128 (473)
T PF14643_consen 99 EKERADKLKKVLRKYVEILEKIAHLLPPDV 128 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 677888889999999999999999999996
No 186
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.37 E-value=42 Score=34.30 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=37.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
...+++.|+.|..|+.+|+.+++.|..+-+....+++..++.-+..+.+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888777777777777776665543
No 187
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=55.31 E-value=1.2e+02 Score=30.75 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=23.4
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
+-+.++.+....++..-+..-+++.+.-++-+.+++.++++.++....|++++++
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333222333333334444555555555555555555443
No 188
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.28 E-value=1.6e+02 Score=28.25 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=49.9
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
..+.|.+..|-|.--+..|++|..++.+++....++|-.+.+.+.. ..+|+.+.+-.
T Consensus 31 S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~r 87 (107)
T PF09304_consen 31 SQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999988 88888554433
No 189
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=55.26 E-value=2.9e+02 Score=32.01 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.4
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 001953 306 YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 306 ~hs~aLT~dG~VysWG~n 323 (992)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 366555478999999964
No 190
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=55.13 E-value=30 Score=39.44 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=21.2
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
+.+|..-..+.+|+...+.++++++++-+..+.+|++..++..+.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433444444555555555555555555555554444444433
No 191
>PRK14148 heat shock protein GrpE; Provisional
Probab=55.00 E-value=81 Score=33.47 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=45.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+..+.|++++..|++++++|+.+....-++++-++|.++.-...+++- +..+.+++++-.|.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~-a~~~~~~~LLpV~Dn 102 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKF-GIEKFAKELLPVIDS 102 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 4556778888888888888888888888888888877777666554443 345666666666655
No 192
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=54.73 E-value=1.1e+02 Score=31.76 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
-|.++.+....++......-+++.+.-++-+.+++.++++.++....|++|++
T Consensus 55 ~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 55 MLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333344444445555666666666655555554
No 193
>PRK10869 recombination and repair protein; Provisional
Probab=54.52 E-value=35 Score=41.96 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHhh
Q 001953 829 ELERTSKQLKTVTAIAEDEA-----EKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~-----~~~~~ake~iksLt~qlk~~~e 870 (992)
.+++++++++++...+.+.| .+.+||+++-+.++.+|++|.-
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444433333333 3446899999999999999764
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.45 E-value=65 Score=37.96 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=13.1
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeec
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCK 627 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~ 627 (992)
.+.|..|+.-++ .--|.-||.+-|.
T Consensus 228 ~~~c~~c~~~~~----LwicliCg~vgcg 252 (493)
T KOG0804|consen 228 SSLCLACGCTED----LWICLICGNVGCG 252 (493)
T ss_pred hhhhhhhccccc----EEEEEEccceecc
Confidence 344444444333 2346667777665
No 195
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.34 E-value=51 Score=40.31 Aligned_cols=46 Identities=30% Similarity=0.341 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 823 SEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
++..+.+++++++++.++..... +.++++|+++=|.++++||+++=
T Consensus 344 ~~~Le~~~~~l~~~~~~~A~~Ls--~~R~~~A~~L~~~v~~eL~~L~M 389 (557)
T COG0497 344 LEALEKEVKKLKAELLEAAEALS--AIRKKAAKELEKEVTAELKALAM 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445555555555544433222 35789999999999999999763
No 196
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.32 E-value=91 Score=32.49 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=9.2
Q ss_pred chHhhhhhHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVE 817 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~ 817 (992)
++++....+.+|+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 197
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=54.08 E-value=76 Score=29.64 Aligned_cols=82 Identities=26% Similarity=0.270 Sum_probs=46.4
Q ss_pred ccchHhhhhhHHHHHHHH---HHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKL---RAQV-EELTSKSEHLE---AELERTSKQLKTVTAIAEDEAEKCKTAN-EVIKSLTVQLK 866 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ak-e~iksLt~qlk 866 (992)
.++|...--.|+..+.|| |++| +-|.++++.-. +.+.++..-.-+-.+.+..|++|-=++- --.|.|..|||
T Consensus 11 l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LK 90 (107)
T PRK15365 11 YRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLK 90 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555666555554 4567 55655554321 1122222222233455566666543333 34689999999
Q ss_pred HHhhcCCCCC
Q 001953 867 KMAEKSPEGA 876 (992)
Q Consensus 867 ~~~e~lp~~~ 876 (992)
.|-.+.|++.
T Consensus 91 nlnt~~~~~~ 100 (107)
T PRK15365 91 QLNAQAPVEI 100 (107)
T ss_pred hcCCCCceeC
Confidence 9999888775
No 198
>PRK14139 heat shock protein GrpE; Provisional
Probab=53.90 E-value=80 Score=33.25 Aligned_cols=61 Identities=20% Similarity=0.142 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+.|.+++..|++++++|+.+.-...++.+.++|.++.-...+++.+. -+.+++++-.+.+
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 94 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI-ESFAESLLPVKDS 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 345666777777777777777777777777777666665544444332 2444444444443
No 199
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=53.67 E-value=91 Score=34.45 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=47.6
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
+..+..-+.+..++..|..+++.|..+...-..+.+.....++++..-|.+-..+.+....-|+.|..|+..+.+
T Consensus 41 ~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 41 NPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334444555566666666666666666666666666666666666666666666666666666666666666665
No 200
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.55 E-value=37 Score=33.00 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=40.0
Q ss_pred eeccceeeeccCccCcccccC--CCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRY--PRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~--~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|-++.--.|..|....+-..- ....+..+.|.|.-.+|+|=|.|.|..|++.|+..|+.
T Consensus 60 il~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 60 ILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred EEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 555555566666554211111 11123357888877999999999999999999999863
No 201
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=53.50 E-value=56 Score=31.81 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 001953 844 AEDEAEKCKTANEVIKSLTVQL 865 (992)
Q Consensus 844 ~~~~~~~~~~ake~iksLt~ql 865 (992)
..++-.||.-+||++..|.+|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 6788899999999999998865
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.16 E-value=3.5e+02 Score=29.83 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCc-cCCCCCCCccccEEeeecCCCcEEE--EEecCcEEEEEEcCCcEE
Q 001953 242 MALDVHNIACGARHAVLVTKQGEIFSWGEESGGR-LGHGREADVSHPQLIEILSGVNVEL--VACGEYHTCAVTRSGDLY 318 (992)
Q Consensus 242 ~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~Gq-LG~g~~~~~~~P~~V~~l~~~~I~~--Va~G~~hs~aLT~dG~Vy 318 (992)
...+|-.++.-+.|. +..-||.||.|-.|..-. ++....-.+..|..+..++--.|-. +--.++..++---||.+|
T Consensus 61 hdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred cCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence 345677777665554 345579999999887655 5555445566677665433222222 222233333333466667
Q ss_pred EEc
Q 001953 319 TWG 321 (992)
Q Consensus 319 sWG 321 (992)
+|-
T Consensus 140 ~~d 142 (325)
T KOG0649|consen 140 QVD 142 (325)
T ss_pred EEE
Confidence 664
No 203
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=52.89 E-value=5.9 Score=52.27 Aligned_cols=34 Identities=32% Similarity=1.004 Sum_probs=29.2
Q ss_pred ccccccCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 594 VSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 594 v~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
.++...-.|-.|++.|.-.|++||| ||+++|.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 3344455699999999999999999 999999999
No 204
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=52.68 E-value=23 Score=36.14 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
...+.+..++..|++++++|..+.....++++...+.++.-
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e 51 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKE 51 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555444433
No 205
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.67 E-value=96 Score=29.55 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERT--SKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
..++.+|+.++.....+-+..|.+++.. ++.+...-...++...+.++-.+-|++++.|+.=|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778777777788888888888777 77777777777788888888888888888887766554
No 206
>PHA02047 phage lambda Rz1-like protein
Probab=52.44 E-value=34 Score=31.78 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=23.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (992)
.++|+..-|.++..+..++.||+.|.++++.++.||..
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~ 73 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDR 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666555543
No 207
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.36 E-value=56 Score=33.43 Aligned_cols=50 Identities=32% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 818 ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
.|..|...-..|.++.++.+.|...-.-.+|.|.|.|.++|-||....|.
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444455666777777777777788888888899999988887664
No 208
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.88 E-value=98 Score=35.26 Aligned_cols=75 Identities=27% Similarity=0.299 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSE-----------HLEAELERTSKQLKTVTAIAEDEAEKCKTANE-------VIKSLTV 863 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake-------~iksLt~ 863 (992)
|.-+.+|-..|+.+.+.|..+++ ..+.|+|.+..+++.+...+..|.+|++.-++ =|..|..
T Consensus 130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~ 209 (309)
T PF09728_consen 130 NIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKE 209 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555555555555554444 55678888999999999999999999999999 7777777
Q ss_pred HHHHHhhcCCCCC
Q 001953 864 QLKKMAEKSPEGA 876 (992)
Q Consensus 864 qlk~~~e~lp~~~ 876 (992)
+-++|-.+|-.+.
T Consensus 210 ~E~~Lr~QL~~Y~ 222 (309)
T PF09728_consen 210 TEKELREQLNLYS 222 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 209
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.64 E-value=1e+02 Score=34.69 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 836 QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
.+.++-..+.+.+++.+.-.+-|+.+-+.|+++-.
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555554433
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.63 E-value=63 Score=40.62 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
-+.++.++.+++++...+.++.+....++++++++++.
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555554433
No 211
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=51.57 E-value=1.9e+02 Score=26.24 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=49.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
.|.+|.--+.+.+|+..++.+-+++..+...|-.|++..++++-+.=..=...-.+- -|-|.-|..||-
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 467788888888888888889999999999999999988888776542222111111 356777777764
No 212
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.44 E-value=1.5e+02 Score=30.70 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=28.1
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
+-|.++.+....++...+..-+++.+.-+.-+.+|+.++++.++....|++++++.
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~ 101 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI 101 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444444444443333334444445555556666666665555555544
No 213
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=51.40 E-value=5.2 Score=44.79 Aligned_cols=65 Identities=25% Similarity=0.519 Sum_probs=51.2
Q ss_pred ccccccccCcCCCCCCCCCcccccccccCCCceeeccCCC----ccccccccCCCCCCCcccChhhHHh
Q 001953 592 KWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSS----RKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 592 kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss----~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
.|+.+.+...|..|...|.|+++.|+|+.||.++|..|.. +|.+.+.+..-.+...+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 4666777788999999999999999999999999999977 3334444444456777888888876
No 214
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.24 E-value=70 Score=27.88 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=34.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
+|.|=..++.|..|-..|+.|+..+...-...-.+.+.+..+|+..++..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777777777777777777776666677777777776655544
No 215
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.08 E-value=88 Score=33.15 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+.+++..|++|+++++.+.....++++-+++.++.-...|+ ..+.-+.|++++-.|.+
T Consensus 40 ~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 40 EEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344788888888888777777777777776666665554444 33344555665555554
No 216
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.91 E-value=1.2e+02 Score=34.70 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------HHHHHHHhhhhHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT-------SKQLKTVTAI--------AEDEAEKCKTANEVIKSLTVQ 864 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~ake~iksLt~q 864 (992)
+.=+.|.+|-++|++..+..++|+++...-...+ ++++++...- -.||.+..+..++-||....+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 3445667777777776655555555544322222 2222222211 123455555556666666677
Q ss_pred HHHHhhcCCCC
Q 001953 865 LKKMAEKSPEG 875 (992)
Q Consensus 865 lk~~~e~lp~~ 875 (992)
+.||-.-||.-
T Consensus 84 l~DmEa~LPkk 94 (330)
T PF07851_consen 84 LFDMEAFLPKK 94 (330)
T ss_pred HHHHHhhCCCC
Confidence 88888778775
No 217
>PRK14162 heat shock protein GrpE; Provisional
Probab=50.84 E-value=97 Score=32.89 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+.|.+++..|++++++|+.+....-++.+.+++..+.-...+++.+ ..+.+++++-.+++
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a-~~~~~~~LLpV~Dn 101 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYE-SQSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 34566677777777777777777777777777766666554444433 34555665555554
No 218
>PLN02153 epithiospecifier protein
Probab=50.64 E-value=4.2e+02 Score=30.06 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=12.3
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 001953 306 YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 306 ~hs~aLT~dG~VysWG~n 323 (992)
.|++++ .+++||.+|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999864
No 219
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.56 E-value=1.2e+02 Score=34.74 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
..+|...|+.+.++|++....-..++++..+-.+.
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~ 36 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDK 36 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766665555555444444333
No 220
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.51 E-value=85 Score=39.55 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=53.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhc
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK---TANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ake~iksLt~qlk~~~e~ 871 (992)
.+..++.++.|.+++..|++....|...+.....+++++.+.+......+.++...-. +-++..|-|-+|+-|+-..
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555666778888888888888888888888888888877777776555555554444 3347777777777776554
No 221
>PRK14158 heat shock protein GrpE; Provisional
Probab=50.51 E-value=1.4e+02 Score=31.66 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=39.9
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.....+.|++++..|++++++|+.+.....++++.+++..+.-...+++- +..+.+++++-.+.+
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~-a~~~~~~~lLpV~Dn 102 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY-GNESLILEILPAVDN 102 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhH
Confidence 33445667777777777777777777777777777766666555444433 233455555554443
No 222
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=50.42 E-value=84 Score=37.37 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=45.9
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Q 001953 804 SLNQEIIKLRA---QVEELTSKSEHLEA----ELERTSKQLKTVTAIAEDEAEKCKTANEVIK-SLTV 863 (992)
Q Consensus 804 ~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ake~ik-sLt~ 863 (992)
-+++||++--. |+++++.+-+++.. .|++++++-+||+.+|.|--+|.+.+.++-. +|++
T Consensus 13 yvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~ 80 (436)
T PF01093_consen 13 YVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMA 80 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778877644 77888887776654 4688899999999999999999999877654 4433
No 223
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=50.37 E-value=1.7e+02 Score=28.81 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=26.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
+-|.+..+.....+...+..-+++.+.-.+-+.+++.++++.++....|++++++.
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~ 87 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKL 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333334444555555555555555555555543
No 224
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.82 E-value=1.1e+02 Score=35.06 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=31.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVE-----------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTA 854 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 854 (992)
...|+...+.|..|+.+|++.+. .|+.+-..+..+++..++++.+.-....+-..+-++.
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776443 3344444444555555554444444443333333333
No 225
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.81 E-value=81 Score=37.70 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCcccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 789 RSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (992)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (992)
+.....-|....+-.-|.-+++++|.+++.|.++=+.+-+|.++++++
T Consensus 48 kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 48 KALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345555666666677777777777777776665555555555443
No 226
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=49.70 E-value=1.9e+02 Score=30.45 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
|+.|=..||.....|.....+...+|-....++-+...- -|+++-+-.|++||.|.+||+
T Consensus 35 LELESidLrEks~~L~~lL~~ns~~L~~~~~~Ln~~l~~--~~~s~~~~ik~~i~~l~~~i~ 94 (190)
T PF09074_consen 35 LELESIDLREKSSKLINLLNQNSKELCSVQEQLNELLNS--IEKSSNEDIKKLIKSLGNQIN 94 (190)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHH
Confidence 445556666666677666666666666666666555422 237788888999999998654
No 227
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.52 E-value=1.6e+02 Score=30.36 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=26.9
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (992)
+-|.++.+....++...+.--+++.+.-++-+.+++.++++.++....|.+|+++.
T Consensus 43 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~ 98 (173)
T PRK13460 43 KALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKL 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444333333333333344555555555555555555555443
No 228
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.40 E-value=1.6e+02 Score=30.38 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=26.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
.+-|.++.+....++...+..-+++...-++-+.+++.++++.++....|+.+++
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~ 98 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQAR 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444444555555555555444444443
No 229
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=49.37 E-value=1.6e+02 Score=30.73 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=35.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
.+-|.++.+....++...+...+++.++-.+-+.+++.++++.++....|+.+|++.+
T Consensus 50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~ 107 (184)
T CHL00019 50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREK 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555555555555556677777777777777777666553
No 230
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.36 E-value=1.8e+02 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (992)
.+++..+..++..++...+.+....+.++++
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 231
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=49.14 E-value=1.8e+02 Score=36.10 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=31.1
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCC---EEEEEEcCCEEEEEEcCCcEEEEEc
Q 001953 483 ALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESF---VEEVACGAYHVAALTSTSKVYTWGK 547 (992)
Q Consensus 483 aLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~---V~~Ia~G~~Ht~aLt~~G~Vy~WG~ 547 (992)
+..-+|.||+.|.... +..... ..... +.... +..+.....+..+..-+|++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~~------VE~yd-p~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALSS------VERYD-PETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccce------EEEEc-CCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455789999995442 111110 11111 11122 2334456677777788999999885
No 232
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=49.11 E-value=2.3e+02 Score=31.23 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCcEEEEEECcceeEEEecCCeEEEEecCCCCC-CCCCCCcCCCcCeEEee
Q 001953 350 GIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGA-LGHGDHISTSIPREVET 399 (992)
Q Consensus 350 ~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~Gq-LG~g~~~~~~~P~~V~~ 399 (992)
+.+|-.++.-..| ++..-+|.||+|-.|++-. ++.........|..+..
T Consensus 62 dgpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~ 111 (325)
T KOG0649|consen 62 DGPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDA 111 (325)
T ss_pred CCCeeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCccccCc
Confidence 3456666554443 3344569999999998766 66555555556666543
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.08 E-value=75 Score=32.63 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=6.4
Q ss_pred hHhhhhhHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRA 814 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~ 814 (992)
|+.....|.+|+..|++
T Consensus 84 L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 84 LREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 234
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.96 E-value=77 Score=40.69 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 819 LTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (992)
++++-+..+.+.++.+++-++.+..|++||
T Consensus 541 ~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444455554
No 235
>smart00338 BRLZ basic region leucin zipper.
Probab=48.86 E-value=45 Score=28.54 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
-+.|..+|..|.++...|..+......+++.++.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666655543
No 236
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=48.71 E-value=70 Score=32.81 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 001953 840 VTAIAEDEAEKCKTANEV 857 (992)
Q Consensus 840 ~~~~~~~~~~~~~~ake~ 857 (992)
..++-..||+||.+++|-
T Consensus 118 ~asqYQkEAeKCnsgmeT 135 (176)
T PF06364_consen 118 MASQYQKEAEKCNSGMET 135 (176)
T ss_pred HHHHHHHHHHhhcchHHH
Confidence 344556889999888664
No 237
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.68 E-value=86 Score=40.46 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
.+|++.|+.+++.|.+.-+..+.+++...+++.+..+...+..+|..++..-.+-+.++|++...++-..
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444445555555555555666666666666666666666666665443
No 238
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.57 E-value=87 Score=33.03 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001953 858 IKSLTVQL 865 (992)
Q Consensus 858 iksLt~ql 865 (992)
++.|..++
T Consensus 112 l~~l~~~~ 119 (188)
T PF03962_consen 112 LEELKKEL 119 (188)
T ss_pred HHHHHHHH
Confidence 33333333
No 239
>PRK14141 heat shock protein GrpE; Provisional
Probab=48.13 E-value=79 Score=33.94 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
|.+++..|++++++|+.+....-++++.++|..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 240
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.01 E-value=95 Score=36.87 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQ----LKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
..|..+|..++++|+.+-.....+|.+..++ +.+..+-+++-+.+.+++++-.+.++++|.++.-.+|--.
T Consensus 35 d~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~ 109 (429)
T COG0172 35 DEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIP 109 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCC
Confidence 3444455555555555555555555533221 2334444555666777777777777778877777766543
No 241
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.89 E-value=1e+02 Score=35.88 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 826 LEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
...+++..-++.+++.....+--+|.+.|-+-|..+|.+|.++.|+|-
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345666666777777777788888899999999999999998888763
No 242
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.87 E-value=1e+02 Score=39.04 Aligned_cols=69 Identities=13% Similarity=0.268 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
..|++.|..|+..+.+.+++...++..+++.++.+..+|.|=.++..+|.+-+-++..+|-.|=..+..
T Consensus 397 ~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 397 ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666668888888899999899888889999999998888888766555433
No 243
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.86 E-value=2e+02 Score=29.43 Aligned_cols=17 Identities=6% Similarity=0.298 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001953 852 KTANEVIKSLTVQLKKM 868 (992)
Q Consensus 852 ~~ake~iksLt~qlk~~ 868 (992)
+..-+++++|....++|
T Consensus 99 ~~ea~L~~~~~~~~~~~ 115 (155)
T PRK06569 99 NLEQDLKNSINQNIEDI 115 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345555555545444
No 244
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=47.77 E-value=1.8e+02 Score=30.45 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 001953 838 KTVTAIAEDEAE 849 (992)
Q Consensus 838 ~~~~~~~~~~~~ 849 (992)
+++...|..|++
T Consensus 115 ~~~~~~A~~e~~ 126 (181)
T PRK13454 115 DVAIAKADAEIA 126 (181)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 245
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=47.68 E-value=75 Score=42.42 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=4.4
Q ss_pred ceEEEEE
Q 001953 41 QSFSLIY 47 (992)
Q Consensus 41 ~~fs~i~ 47 (992)
..|++|+
T Consensus 23 ~~~~~i~ 29 (1164)
T TIGR02169 23 KGFTVIS 29 (1164)
T ss_pred CCeEEEE
Confidence 4566777
No 246
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.50 E-value=7.6 Score=43.75 Aligned_cols=53 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred ccCcCCCCCCCCCcccccccccC-CCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYN-CGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~-CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
|...|..|...--+.....-=.+ ||+.||.+|...- ...+.-.|+.|...|.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l---------~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL---------FVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHH---------hcCCCCCCCCCCCccch
No 247
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.49 E-value=1.9e+02 Score=27.18 Aligned_cols=47 Identities=13% Similarity=0.313 Sum_probs=30.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+.++..++....-+..|......+..+++....+|...-..+.++.
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777666655555544443
No 248
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=47.42 E-value=3.3e+02 Score=28.69 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HhhhhHHHHHHHHH---HHHHHh
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT-------VTAIAEDEAE----KCKTANEVIKSLTV---QLKKMA 869 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~ake~iksLt~---qlk~~~ 869 (992)
.|.+..+||+..-++|+..|..++-+-|+.+|...| +..+...|.+ |.+...+-.+.|+. +|||+-
T Consensus 59 ~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 59 GLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455556677788889999999888888888776554 2233333332 33333233555554 688887
Q ss_pred hcCCCCC
Q 001953 870 EKSPEGA 876 (992)
Q Consensus 870 e~lp~~~ 876 (992)
--|-.+.
T Consensus 139 l~LDeer 145 (195)
T PF10226_consen 139 LYLDEER 145 (195)
T ss_pred HHHhccc
Confidence 7776554
No 249
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.26 E-value=27 Score=27.49 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=22.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
-+-||+-+|.|.+|-.+|+.+|++|+..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568888899999999999888888754
No 250
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.25 E-value=97 Score=31.53 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSL 861 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksL 861 (992)
.++...|..|+....+..+....|+.+....++.-.....+--.+++++...++-+
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433333333344444444433333
No 251
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.12 E-value=93 Score=37.56 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=52.0
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
-.+.+++...+....|+.+|+++-++|...-++...+++++|+.|..+ .-| ..+-|-+|..-..|++|+.++-
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~----q~e---L~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK----QLE---LSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----HHH---HHHHHhHHHHHHHHHHHHHhhc
Confidence 345667777777788888888887777777777777777777665433 222 2355677888888999998873
Q ss_pred C
Q 001953 873 P 873 (992)
Q Consensus 873 p 873 (992)
-
T Consensus 152 ~ 152 (907)
T KOG2264|consen 152 N 152 (907)
T ss_pred C
Confidence 3
No 252
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.09 E-value=76 Score=32.97 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred hHhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVE--------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt 862 (992)
+.+.+..|++|+.+|++.++ ..+.....++.+++.+..++..-++-++-|-+..| .++||.+.
T Consensus 89 ie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K--~~~lr~~~ 159 (177)
T PF07798_consen 89 IEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK--WDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 33344444455555555332 34445555666666666666666665555555433 24555443
No 253
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=46.77 E-value=1.9e+02 Score=29.39 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=25.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
+-|.++.+....++...+..-+++.+.-.+-+.++..++++.++....|+.|+++
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~ 89 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARA 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444333333333444445555555555555555554444
No 254
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=46.59 E-value=2.1e+02 Score=26.33 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKS-EHLEAELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (992)
|.|.+|+..|+..+++|.... +.-..+...+++++++....+++.+
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~ 47 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRA 47 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888777443 3334556666666666665555433
No 255
>PRK14145 heat shock protein GrpE; Provisional
Probab=46.28 E-value=1.5e+02 Score=31.63 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
...+.|.+++.+|++++++|+.+....-++++-+++.++.=...+++.+. -+.+++++-.+.+
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-e~~~~~LLpV~Dn 107 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGK-EQVILELLPVMDN 107 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 34455667777777777777776666667766666666555544443332 3455555555544
No 256
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.10 E-value=98 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=33.2
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
++.--.+|+..+..++.|+..|..+|..++.|+|+++..+.-+
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777888899999999999999999888776655443
No 257
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.06 E-value=65 Score=34.61 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT---AIAEDEAEKCK 852 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 852 (992)
.|||.-+|++.+-|+..-+.++.|...+++.|.+.- +-|.|++.|+|
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRk 141 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRK 141 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777766666665554 45555555553
No 258
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.05 E-value=1.6e+02 Score=30.52 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh-hhHHHHHHHHHHHHHHhhcC
Q 001953 817 EELTSKSEHLEAELERTSKQLKTVTAIAEDEAE----KCK-TANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ake~iksLt~qlk~~~e~l 872 (992)
..++..-+....++++.++++++-+.....|.. -.| ..+|..+.+..+++++-.|+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki 136 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333332211 001 25666677776676665554
No 259
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.02 E-value=84 Score=39.52 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 829 ELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+++.+++++.++-+...+.-.+.+.+++-|+.|..|++.+.++
T Consensus 429 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 429 ELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555555555444443
No 260
>PRK14156 heat shock protein GrpE; Provisional
Probab=45.33 E-value=1.1e+02 Score=32.08 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+.+|+..|++++++|+.+.....++++.++|..+.-...++.- +.-+.+++++-.+++
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~-a~~~~~~~LLpVlDn 89 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRY-RSQDLAKAILPSLDN 89 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 4556666777777776666666666666666665555444332 234555555555554
No 261
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=45.27 E-value=1.7e+02 Score=32.92 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.......|+..||.+|..+...-.....++..++..+++.-....+|.+.++.+..-|..|-.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk 110 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRK 110 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455677777777777777777767777777777777777766666666666666655555544
No 262
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.14 E-value=1.4e+02 Score=36.60 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=4.1
Q ss_pred cCCcEEEEe
Q 001953 261 KQGEIFSWG 269 (992)
Q Consensus 261 ~dG~Vy~WG 269 (992)
.||+++.-+
T Consensus 27 ~dg~~~~k~ 35 (652)
T COG2433 27 EDGEIVEKG 35 (652)
T ss_pred ecCcEEeeh
Confidence 444444433
No 263
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=45.04 E-value=1.2e+02 Score=30.30 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 816 VEELTSKSEHLE-AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 816 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+.+|+..+.+.+ .+|+...+|+..++.-=++|.++-++++.-.+..-+++++|++.
T Consensus 11 ~R~lra~~re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333 34555666666666555555555555555555555555555554
No 264
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.02 E-value=4.6 Score=35.95 Aligned_cols=59 Identities=22% Similarity=0.641 Sum_probs=23.2
Q ss_pred ccccccccCcCCCCCCCCCccccc---ccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 592 KWVSSVDHSVCSSCHNPFGFRRKR---HNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 592 kwv~~~d~s~C~~C~~~Fsf~r~r---h~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
|.+...+..+|..|+...+++..- -.|-.|+..+|..|.... ......+|..|....++
T Consensus 2 kp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE---------rkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 2 KPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE---------RKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH---------HHTS-SB-TTT--B---
T ss_pred cChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH---------hhcCcccccccCCCccc
Confidence 345556677899999887766542 357888999999887632 23455788888866554
No 265
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=44.93 E-value=1.2e+02 Score=30.41 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001953 832 RTSKQLKTVTAIAEDEAEKCKT 853 (992)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~ 853 (992)
..++.+...+.+..+.-+|.+.
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHH
Confidence 3444444445555555555443
No 266
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.86 E-value=1.1e+02 Score=32.19 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+.+++..|+.+.+.|+.+......+++..+++.++
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 267
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=44.75 E-value=1.8e+02 Score=31.85 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 001953 839 TVTAIAEDEAEK 850 (992)
Q Consensus 839 ~~~~~~~~~~~~ 850 (992)
+.++.|++|+++
T Consensus 90 ~i~~~A~~ea~~ 101 (246)
T TIGR03321 90 RLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 268
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.71 E-value=1.3e+02 Score=37.28 Aligned_cols=50 Identities=30% Similarity=0.423 Sum_probs=37.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (992)
+......+...+|+..|+.|++.|..+++..+.+++.++..++.+.....
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456678888899999999999999888888888887776554433
No 269
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.64 E-value=2.2e+02 Score=29.00 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=20.1
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (992)
.-|.++.+....++...+..-+++.+.-++-+.++..++++.++....|++++
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a 87 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIK 87 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333332222233233333334444444444443444333
No 270
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.60 E-value=1.6e+02 Score=33.38 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=47.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLE------------------AELERTSKQLKTVTAIAEDEAEKCKTANE 856 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ake 856 (992)
+..+...-+.++.+|..|+.+|++|+...+... ..+....+++.+++.....+..|...+-+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~ 155 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQS 155 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555566666666665554442111 12345666777777777777777777777
Q ss_pred HHHHHHHHHHHHhhcCC
Q 001953 857 VIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 857 ~iksLt~qlk~~~e~lp 873 (992)
-.+.+.++|.++.++.-
T Consensus 156 k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 156 KASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666654
No 271
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.60 E-value=2.1e+02 Score=26.94 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
+..........+..+.......+...+..+..|.....
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~ 49 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFD 49 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444443333
No 272
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=44.47 E-value=90 Score=41.68 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=4.7
Q ss_pred EEEEecCCCC
Q 001953 944 ITLSTLPGGG 953 (992)
Q Consensus 944 ~t~~~~~~g~ 953 (992)
|.|.+.|.|.
T Consensus 1058 ~~~~~~~~~~ 1067 (1164)
T TIGR02169 1058 LELSAKPKGK 1067 (1164)
T ss_pred eEEEEEcCCC
Confidence 3444455554
No 273
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.44 E-value=1.4e+02 Score=31.81 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=27.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+|+..+....+|..+..+.+.|.+-.+....+++.++++++.-- .+-...+.+|.-++.++.+|+++
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443333211 11122233455555565555544
No 274
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=44.41 E-value=88 Score=33.68 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=50.0
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
.++=.....+.|.+++.+|+.|.++|.+.++.-+...++..+-....+ .|+...|++..|...|++
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL--------~a~sl~~l~~~L~~~l~~ 106 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALL--------AARSLQELLQALDDGLRE 106 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------C--SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHH
Confidence 456666788899999999999999999999888877766665544444 345677888888888876
No 275
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.40 E-value=1.9e+02 Score=32.19 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
..|++.++++++.|-.+.+....+++..++++.+.=+..++--.+.+..+|=|+....
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333333333333333322222222333344444444333
No 276
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.39 E-value=30 Score=43.70 Aligned_cols=74 Identities=18% Similarity=0.376 Sum_probs=55.2
Q ss_pred eeEeeCCCcc-eeeccceeeeccCccC---------cccccC-CCCCCCCceEEEEEcC-----CCceeeeCCHHHHHHH
Q 001953 2 LIWYSGKEER-QLKLNQVSRIIPGQRT---------ATFQRY-PRPEKEYQSFSLIYND-----RSLDLICKDKDEAEVW 65 (992)
Q Consensus 2 l~w~~~~k~k-~~~~~~v~~v~~G~~t---------~~f~~~-~~~~~~~~~fs~i~~~-----~sLdLi~~~~~ea~~W 65 (992)
|.|.-..++- .++|++|...|.|+-. ++|.-- +....++.-.+|++|- ..+.+||...++|..|
T Consensus 47 LYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w 126 (1189)
T KOG1265|consen 47 LYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPPDRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLW 126 (1189)
T ss_pred EEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCcccccccceEEEEecCCcccceEEEEeeeeHHHHHHH
Confidence 6787665544 3999999999999654 223222 2225667888999964 4789999999999999
Q ss_pred HHHHHHHHhc
Q 001953 66 LVGLKALITR 75 (992)
Q Consensus 66 ~~gL~~l~~~ 75 (992)
..||-.|.-+
T Consensus 127 ~~~~~~l~~~ 136 (1189)
T KOG1265|consen 127 TAGLLKLAKS 136 (1189)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 277
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.37 E-value=1.8e+02 Score=31.24 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHhhcCCCCC
Q 001953 818 ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV---QLKKMAEKSPEGA 876 (992)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~---qlk~~~e~lp~~~ 876 (992)
.+++..+....+++..++.-.+......+--++..+..|-||+|.- ||.+|-.+||.+.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 4455555555666666666666666666667778888888998875 8999999999664
No 278
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.37 E-value=66 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
..+++|+..++++++.|+++=+....|+++++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345555555555555555555555555555443
No 279
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=44.30 E-value=1.1e+02 Score=29.46 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 826 LEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
-+.++..++++.++....|+++++
T Consensus 56 ~~~~l~~a~~ea~~i~~~a~~~a~ 79 (132)
T PF00430_consen 56 YEEKLAEAREEAQEIIEEAKEEAE 79 (132)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 280
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=44.18 E-value=27 Score=40.19 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=37.1
Q ss_pred ccCCCCCCCCceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 31 QRYPRPEKEYQSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 31 ~~~~~~~~~~~~fs~i~--~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|+.....+|+++|-|-- ++++|=|=|+|.+||+.||..|.+-+..
T Consensus 227 R~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 227 RNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred hhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 34456788899998777 7789999999999999999998776543
No 281
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.17 E-value=4.7 Score=39.35 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001953 834 SKQLKTVTAIAEDEAE 849 (992)
Q Consensus 834 ~~~~~~~~~~~~~~~~ 849 (992)
++...+....|.+||+
T Consensus 73 q~~a~~~~~~A~~eA~ 88 (131)
T PF05103_consen 73 QETADEIKAEAEEEAE 88 (131)
T ss_dssp ----------------
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3333444444444443
No 282
>PRK10132 hypothetical protein; Provisional
Probab=44.09 E-value=2.4e+02 Score=27.06 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=34.5
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTS-KSEHLEAELERTSKQLKTVTAIAED 846 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (992)
++....+.|..|+..|-..+++|-. ....-..+++.++.+++.....|++
T Consensus 9 ~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~ 59 (108)
T PRK10132 9 DVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRA 59 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888888876653 3344456677777777777766664
No 283
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=44.07 E-value=2.3e+02 Score=28.67 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001953 827 EAELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~ 848 (992)
+.++..++++.++...-|++|+
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a 84 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKA 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333333333
No 284
>PHA02047 phage lambda Rz1-like protein
Probab=43.99 E-value=1.4e+02 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 813 RAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
+..+++|+.+.|..+.++..++++++..-..
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666655433
No 285
>PRK14151 heat shock protein GrpE; Provisional
Probab=43.86 E-value=1.3e+02 Score=31.37 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
++..|++++++++.+.....++++.++|..+
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444334444444443333
No 286
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.62 E-value=84 Score=28.55 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=14.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+...+.|.+|+..||..+..|..+
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~R 38 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDR 38 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666655555444
No 287
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=43.59 E-value=3.6e+02 Score=33.40 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.5
Q ss_pred cEEEEEecCcEEEEEEcCCcEEEE
Q 001953 297 NVELVACGEYHTCAVTRSGDLYTW 320 (992)
Q Consensus 297 ~I~~Va~G~~hs~aLT~dG~VysW 320 (992)
.++....-.+|.++-|+.|.||..
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEE
Confidence 344455567899999999999984
No 288
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=43.50 E-value=1.9e+02 Score=30.77 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
-.|-+|.+..++.|+.+-|.++.+||.++|.+|+|-.++. .-|=-|++-+|++..
T Consensus 66 a~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt---ta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 66 APEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT---TACFQANQKLKSIKE 120 (272)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3445555556677888888899999999999999865543 345556666666543
No 289
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.40 E-value=1.6e+02 Score=31.97 Aligned_cols=74 Identities=9% Similarity=0.263 Sum_probs=40.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.+.+-.+...|.+++..+...+++|....+.-......+..+|+......++--.+...|..-++.|..++..+
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665555555555555555555555444444444544455554444433
No 290
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=43.24 E-value=3.2e+02 Score=30.25 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=24.0
Q ss_pred cccEEeeecCCCcEEE-EEecCcEEEEE-EcCCcEEEEcCC
Q 001953 285 SHPQLIEILSGVNVEL-VACGEYHTCAV-TRSGDLYTWGDG 323 (992)
Q Consensus 285 ~~P~~V~~l~~~~I~~-Va~G~~hs~aL-T~dG~VysWG~n 323 (992)
..|..+..-.+ .|+. +-|-..|+++- +.++.|-.|-..
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 33444443333 3443 56888888776 778999999654
No 291
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=43.23 E-value=76 Score=29.13 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
+-+.|..||+.|.+++..|.+....-...++.++.+...|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777776666554
No 292
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.17 E-value=1.6e+02 Score=34.63 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=27.5
Q ss_pred ccchHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQV----EELTSKSEHLEAELERTSKQLKTVTAIAEDE 847 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (992)
..++|+....|.+++.+|+.|+ +-+.+..+++.-+.+++..++.+.+.+=-.|
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~E 277 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNE 277 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777633 2333333344444445555555554443333
No 293
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.14 E-value=85 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
..++..|+.+...+.++-...+.++++++-.++|.
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444443
No 294
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.01 E-value=1.7e+02 Score=32.55 Aligned_cols=71 Identities=11% Similarity=0.219 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
-.-...++..+++.+..+..+-+....+++....++++.-....+.-++.|..+.-|+-|...+++--+.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666677777766677777777777776666666666666666666666666665554444
No 295
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.87 E-value=2.5e+02 Score=29.89 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=62.0
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA--------EKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ake~iksLt~qlk 866 (992)
...+|.+...+.+|+..|+-+.+.|.++++..+.|...+.++...++.-+-..+ .|-++..+.+..-.+||.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888899999999999999999999998888888888887666655 466666777777777888
Q ss_pred HHhhcCCC
Q 001953 867 KMAEKSPE 874 (992)
Q Consensus 867 ~~~e~lp~ 874 (992)
++-...-+
T Consensus 168 evl~~~nl 175 (201)
T PF13851_consen 168 EVLAAANL 175 (201)
T ss_pred HHHHHcCC
Confidence 87665433
No 296
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=42.84 E-value=82 Score=34.79 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+.+|+.|.+|+++|+.++.+++..
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhch
Confidence 667778888888887777666654
No 297
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.82 E-value=1.4e+02 Score=30.77 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (992)
+|+.++..|..+.++.+.||.+++.++..++-...-
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555554444444333
No 298
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.79 E-value=2e+02 Score=32.91 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=29.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.+.+..+.|.+|...|.++++.|++..++.+.|+..+++++++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666777777777777777777777777666665554
No 299
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.66 E-value=1.9e+02 Score=27.33 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
+..+.++|+.+.+.|.++-...+.++.+....++|..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766666666554
No 300
>PF15294 Leu_zip: Leucine zipper
Probab=42.64 E-value=1.4e+02 Score=33.44 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=33.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
|.+.-+-|.+|..+|++++..+..+|-.--.|-.+++.+|+++-.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888887666555666666665554
No 301
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.42 E-value=2.1e+02 Score=26.03 Aligned_cols=18 Identities=6% Similarity=0.339 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKS 823 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~ 823 (992)
.+|+..+..|++.+.++.
T Consensus 39 ~~~~~~i~~e~~~ll~~~ 56 (90)
T PF06103_consen 39 QEQVDPITKEINDLLHNT 56 (90)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 302
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.38 E-value=52 Score=33.26 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=42.6
Q ss_pred CCCCcccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 788 ARSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
.++....++.|++..+-|+..+++|+..++.|.++.+....+++...++...+
T Consensus 89 e~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 89 EKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555678889999999999999999999999998888888888777765443
No 303
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=42.36 E-value=1.2e+02 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
||..|.+.-+.|.++|.+.+.+++ +--+-|+++-..|..|-.||
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444 55666788888888888876
No 304
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.21 E-value=67 Score=37.07 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
++...+.++..+..+.+....+.+.+.++.++.-..+..-..|...|+.+|..|..
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 33333344444444444444444444444444444455556788888888888877
No 305
>PRK14147 heat shock protein GrpE; Provisional
Probab=42.20 E-value=1.3e+02 Score=31.21 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.9
Q ss_pred eeeeeCCeeE
Q 001953 934 RMVQAESGVY 943 (992)
Q Consensus 934 ~~~~~e~gv~ 943 (992)
.++.+.+|-.
T Consensus 146 Vv~v~qkGY~ 155 (172)
T PRK14147 146 VVQVFQKGYL 155 (172)
T ss_pred EEEEeeCCcE
Confidence 4455555543
No 306
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.10 E-value=2.1e+02 Score=31.51 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=7.2
Q ss_pred CCeeEEEEEecCC
Q 001953 939 ESGVYITLSTLPG 951 (992)
Q Consensus 939 e~gv~~t~~~~~~ 951 (992)
-++|=|+|..-|+
T Consensus 204 ~~~~~~~f~~~p~ 216 (250)
T PRK14474 204 IPGTDIHFVTSPE 216 (250)
T ss_pred CCCCceeeecCcc
Confidence 4555566665554
No 307
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=42.09 E-value=1.2e+02 Score=26.60 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=17.4
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEH 825 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (992)
+=+++.+.+......++.+++++.+...+
T Consensus 23 sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 23 SGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666666666655444
No 308
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.02 E-value=1.7e+02 Score=35.10 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001953 836 QLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 836 ~~~~~~~~~~~~~~~~~ 852 (992)
..++++..|.+|+++-+
T Consensus 83 ~~~~~~~~A~~ea~~i~ 99 (445)
T PRK13428 83 IAEQLRAQADAEAERIK 99 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555544
No 309
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=42.02 E-value=2.5e+02 Score=28.78 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001953 839 TVTAIAEDEAE 849 (992)
Q Consensus 839 ~~~~~~~~~~~ 849 (992)
++.+.|.+|++
T Consensus 95 ~~~~~A~~ea~ 105 (167)
T PRK14475 95 EAKEKLEEQIK 105 (167)
T ss_pred HHHHHHHHHHH
Confidence 33333333433
No 310
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.85 E-value=80 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
+|..+|..+.........|++++
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 311
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.71 E-value=1.4e+02 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
.++.|+.+....+.++..+++++.++
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 312
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=41.46 E-value=6.9e+02 Score=29.89 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred cceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcC
Q 001953 183 SVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQ 262 (992)
Q Consensus 183 ~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~d 262 (992)
.++...--|....+-+-.|++|+|=-+. ...+-..-.--..+....++--+.|.+-=.+|
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss--------------------G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS--------------------GILLNVLSAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc--------------------ccHHHHHHhhccceeEEEEeCCCcEEEecCCC
Q ss_pred CcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccc
Q 001953 263 GEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPR 342 (992)
Q Consensus 263 G~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~ 342 (992)
|.|++|=--+ |=.........|..+-.--...|.++.+|..- .+++||+-+.. ..-.+-.-.......-.
T Consensus 145 g~V~vW~l~~---lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D--~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 145 GAVLVWLLTD---LVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASED--RTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ccEEEEEEEe---ecccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCC--ceEEEEEeccceeeEEE
Q ss_pred eeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCC--CCCCCCCcCCCcCeEEeeccCC----eEEEEEeCCceEE
Q 001953 343 KVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG--ALGHGDHISTSIPREVETLRGL----RTTRVSCGVWHTA 416 (992)
Q Consensus 343 ~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~G--qLG~g~~~~~~~P~~V~~l~~~----~I~~VacG~~ht~ 416 (992)
..+..+. .+.|.-+..+.++=+++|++|..-....- ..|.........-+++..+.|. .|...+-..+-++
T Consensus 215 ~fp~si~---av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 215 TFPSSIK---AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL 291 (476)
T ss_pred ecCCcce---eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE
Q ss_pred EEEEccCCCCCCCCCCCCCCeEEEE
Q 001953 417 AVVVATDSSSSSPSGSTSCGKLFTW 441 (992)
Q Consensus 417 aLve~~~~~~~~~~~st~dG~Vy~W 441 (992)
.+ ++++||+|-.|
T Consensus 292 Ll------------SGd~dg~VcvW 304 (476)
T KOG0646|consen 292 LL------------SGDEDGKVCVW 304 (476)
T ss_pred EE------------eeCCCCCEEEE
No 313
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.29 E-value=1.2e+02 Score=34.11 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=39.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (992)
+..++...+-||.+|..++.++++|..+-.+...+++.++.+-.+..+-+-+
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888888888777666655544
No 314
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.21 E-value=2e+02 Score=29.97 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001953 828 AELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~ 848 (992)
.+|+.++++.++...-|++|+
T Consensus 90 ~~L~~Ar~EA~~ii~~A~~ea 110 (181)
T PRK13454 90 KALADARAEAQRIVAETRAEI 110 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333333333333
No 315
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=41.20 E-value=8.9 Score=48.63 Aligned_cols=78 Identities=29% Similarity=0.505 Sum_probs=0.0
Q ss_pred ccchHhhhhhHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------------------HHHHHHHHH
Q 001953 795 IDDSKQMNDSLN---QEIIKLRAQVEELTSKSEH---LEAELERTSKQLKT--------------------VTAIAEDEA 848 (992)
Q Consensus 795 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~ 848 (992)
++.|++.|+.|. +|...||-++..|+++++. .+.+++++++|+++ ...+..||.
T Consensus 276 i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 276 IDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 849 EKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 849 ~~~~~ake~iksLt~qlk~~~e~l 872 (992)
.|..+.+.-|..+..|+.+|..++
T Consensus 356 ~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 356 KKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
No 316
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.07 E-value=1.6e+02 Score=29.89 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.7
Q ss_pred ccccchHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEII-------KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
..++.+-+.+..|++.+. .|+++++......+.-...|+.+++.++.+....+++..|
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666655 5555555555555555556666666666666555555554
No 317
>PRK15396 murein lipoprotein; Provisional
Probab=41.02 E-value=1.5e+02 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.401 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
|.|..+|+.|.++|..|.+........++.++.....|-
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555555555555555444443
No 318
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=41.00 E-value=1.8e+02 Score=29.03 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSK--SEHLEAELERTSKQLKTVTAIA-EDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ake~iksLt 862 (992)
-|..|+..++..++.+.+. ++.....++++.++|+.+-... .+...+..++..+|.-+.
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~ 132 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYA 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556666666666666655 5555566666666666555544 444444455555554443
No 319
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=40.98 E-value=2.8e+02 Score=27.47 Aligned_cols=55 Identities=5% Similarity=0.104 Sum_probs=25.2
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
.-|.+..+....++...+..-+.+.+..++-+.+++.++++.++....|+.++.+
T Consensus 22 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~ 76 (147)
T TIGR01144 22 KAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSE 76 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333344444444445555555554444444444443
No 320
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=40.96 E-value=5.3e+02 Score=29.22 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=11.5
Q ss_pred EEEEeCCCcEEEEeC
Q 001953 481 SVALTTSGHVYTMGS 495 (992)
Q Consensus 481 tvaLT~dG~Vy~wG~ 495 (992)
..++.-+|+||++|-
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345667899999994
No 321
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.93 E-value=1.9e+02 Score=30.45 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=20.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
..++........+|..|++++..|+.++...+.+|+...+.++
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666666666666666666666655554443
No 322
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.87 E-value=2e+02 Score=34.05 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=9.9
Q ss_pred eeeeCCeeEEEEE
Q 001953 935 MVQAESGVYITLS 947 (992)
Q Consensus 935 ~~~~e~gv~~t~~ 947 (992)
..|.||..|+-|+
T Consensus 394 gg~~~p~LYfEiR 406 (420)
T COG4942 394 GGQGRPALYFEIR 406 (420)
T ss_pred CCCCCcchhhhhh
Confidence 3588888988775
No 323
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.77 E-value=1.5e+02 Score=30.45 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q 001953 804 SLNQEIIKLRA 814 (992)
Q Consensus 804 ~~~~~~~~~~~ 814 (992)
..+.|+..|+.
T Consensus 47 ~~~~e~~~L~~ 57 (158)
T PF09744_consen 47 EHEVELELLRE 57 (158)
T ss_pred hhhhHHHHHHH
Confidence 33333333333
No 324
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=40.73 E-value=79 Score=37.46 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=44.8
Q ss_pred cchHhhhhhHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRA---------QVEELTSKSEH-LEAELERTSKQLKTVTAIAED--EAEKCKTANEVIKSLTV 863 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ake~iksLt~ 863 (992)
+.+.+..+++.+|+..... -++.|++++++ .+.|++++.+++.+...-.++ |..=...+|.++.-.+.
T Consensus 313 ~~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~~ 392 (417)
T TIGR01035 313 EEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPTV 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777776655 24566766655 567777777766322111122 12223556677777777
Q ss_pred HHHHHhhc
Q 001953 864 QLKKMAEK 871 (992)
Q Consensus 864 qlk~~~e~ 871 (992)
+||++++.
T Consensus 393 ~lk~~~~~ 400 (417)
T TIGR01035 393 RLKQLADK 400 (417)
T ss_pred HHHHHhcC
Confidence 89988754
No 325
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.55 E-value=2.2e+02 Score=31.83 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=36.3
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhh
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEE-------LTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKTA 854 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a 854 (992)
+...++.....+.+++++++.++.+ |..|-+....|+++.+|.++..-++ --||-+|+.+-
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4455666666666676666666654 5555555666666666666654432 34666666543
No 326
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=40.54 E-value=8e+02 Score=30.40 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.1
Q ss_pred EEEEEECcceeEEEecCCeEEEE
Q 001953 353 LSYISCGLWHTAVVTSAGHLFTF 375 (992)
Q Consensus 353 Iv~VacG~~hs~aLT~dG~Vy~w 375 (992)
+.-...-.+|.++-|+.|.||..
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEE
Confidence 33344556889999999999983
No 327
>PRK14144 heat shock protein GrpE; Provisional
Probab=40.47 E-value=1.6e+02 Score=31.36 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.|.+++..|++++++|+.+.....++.+.+++.++.-...+++.|. -+.+++++-.+.+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 3556667777777777777766677777666666655555544432 3455555554444
No 328
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=39.91 E-value=2.1e+02 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=13.9
Q ss_pred EEecCCCCcceeEEEeec
Q 001953 946 LSTLPGGGNEVKRVRFSR 963 (992)
Q Consensus 946 ~~~~~~g~~~~~r~~f~~ 963 (992)
.+-+|+|++.-||+.++=
T Consensus 387 ~iR~P~G~r~~RrF~~s~ 404 (460)
T KOG1363|consen 387 AIRLPSGTRLERRFLKSD 404 (460)
T ss_pred EEECCCCCeeeeeeeccc
Confidence 346889998888888773
No 329
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=39.82 E-value=1.6e+02 Score=31.81 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS---------------KQLKTVTAIAEDEAEKCKTANEVIK 859 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ake~ik 859 (992)
.++|+..|+++-.++..++.+-+..+++-+..-.+|+.++ +.|++...-+..|--|-++-+| |+
T Consensus 45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~e-i~ 123 (230)
T PF03904_consen 45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNE-IK 123 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HH
Confidence 5889999999888888877766666555555555555533 3344444444444444455555 88
Q ss_pred HHHHHHHHHhhcCCC
Q 001953 860 SLTVQLKKMAEKSPE 874 (992)
Q Consensus 860 sLt~qlk~~~e~lp~ 874 (992)
-+.++++.|.+++-.
T Consensus 124 k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 124 KVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776543
No 330
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.80 E-value=4.2e+02 Score=31.24 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred ecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCC-eEEEEecCCCC
Q 001953 303 CGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAG-HLFTFGDGSFG 381 (992)
Q Consensus 303 ~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG-~Vy~wG~n~~G 381 (992)
+-..|.++=..|+.++.|+.+.. +.+.-++.++-+|.+ +++|.|| .|+..+
T Consensus 322 pDg~~~V~Gs~dr~i~~wdlDgn------------------~~~~W~gvr~~~v~d-----lait~Dgk~vl~v~----- 373 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTIIMWDLDGN------------------ILGNWEGVRDPKVHD-----LAITYDGKYVLLVT----- 373 (519)
T ss_pred cCCceeEecCCCCcEEEecCCcc------------------hhhcccccccceeEE-----EEEcCCCcEEEEEe-----
Q ss_pred CCCCCCCcCCCcCeEEeeccCC-----eEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC
Q 001953 382 ALGHGDHISTSIPREVETLRGL-----RTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP 456 (992)
Q Consensus 382 qLG~g~~~~~~~P~~V~~l~~~-----~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~ 456 (992)
.+......+.+-..-.+. .|..+.-..+.-+||+. -.+..+..|---+
T Consensus 374 ----~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lvn------------L~~qei~LWDl~e----------- 426 (519)
T KOG0293|consen 374 ----VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVN------------LQDQEIHLWDLEE----------- 426 (519)
T ss_pred ----cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEE------------cccCeeEEeecch-----------
Q ss_pred cccceeeccCCCCC-----eEEEeecCcEEEEE--eCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEc
Q 001953 457 RLFPECVAPLIDEN-----ICQVACGHDLSVAL--TTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACG 529 (992)
Q Consensus 457 ~~~P~~V~~l~~~~-----I~~Ia~G~~htvaL--T~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G 529 (992)
+..|....+.+ |..-..|.+-.++. .+|++||.|-.-. ++....+.+-....+++.-.--
T Consensus 427 ---~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s----------gkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 427 ---NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS----------GKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ---hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC----------CceeEeecCCcceeeEEecCCC
Q ss_pred CCEEEEE-EcCCcEEEEEcCCCCC
Q 001953 530 AYHVAAL-TSTSKVYTWGKGANGQ 552 (992)
Q Consensus 530 ~~Ht~aL-t~~G~Vy~WG~N~~GQ 552 (992)
.-+.+|= ..||+|-.||-..+.+
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred CHHHhhccCCCCeEEEecCCcccc
No 331
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.74 E-value=1.2e+02 Score=40.94 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=19.1
Q ss_pred ccccCCCC--CCCCceEEEEEcC----CCceeeeCCHHHHHHHHHHHH
Q 001953 29 TFQRYPRP--EKEYQSFSLIYND----RSLDLICKDKDEAEVWLVGLK 70 (992)
Q Consensus 29 ~f~~~~~~--~~~~~~fs~i~~~----~sLdLi~~~~~ea~~W~~gL~ 70 (992)
.|++|..+ .+-...|+.|-|- +| +--+|=.||.|.+
T Consensus 10 gFKSF~~~~~i~f~~~~t~IvGPNGSGKS------NI~DAi~fVLG~~ 51 (1163)
T COG1196 10 GFKSFADPTEINFSPGFTAIVGPNGSGKS------NIVDAIRFVLGEQ 51 (1163)
T ss_pred CcccCCCCeeeecCCCCeEEECCCCCchH------HHHHHHHHHhCcc
Confidence 45666543 3335566666621 22 4456666777755
No 332
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.69 E-value=1.4e+02 Score=32.39 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.+.+.++.+..+.|..+.+......++.+.+.+.|+....|.-+ +.|-+-|++|..
T Consensus 44 r~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~ 99 (225)
T COG1842 44 RQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHH
Confidence 33344444445666666777777777777777777754444333 334444444444
No 333
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.67 E-value=62 Score=31.82 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=22.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
.+.|.+.+-.|.|||.+|+..+..+...-+....+.+++
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665555444444433333
No 334
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.66 E-value=1.6e+02 Score=37.59 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 001953 855 NEVIKSLTVQ 864 (992)
Q Consensus 855 ke~iksLt~q 864 (992)
++.+++|..|
T Consensus 658 ~e~~e~le~~ 667 (769)
T PF05911_consen 658 KESYESLETR 667 (769)
T ss_pred HHHHHHHhhh
Confidence 3444444443
No 335
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=39.44 E-value=2.9e+02 Score=26.93 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 840 VTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 840 ~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.+++..|-....-+----|..|..||.|+++||-.
T Consensus 110 itsmls~vmkqny~lslqie~ls~qlqeisdkldi 144 (177)
T PF12495_consen 110 ITSMLSDVMKQNYVLSLQIEFLSKQLQEISDKLDI 144 (177)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhcce
Confidence 34555555555555556688999999999999865
No 336
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.29 E-value=2.3e+02 Score=28.38 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (992)
.+.+...|+.|.+....++.+++.++.+...+-.+++.++....+.+....+-+.+
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677777777766666666666666666666666666666666666544444433
No 337
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.28 E-value=1.5e+02 Score=31.03 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=11.3
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (992)
.+...+.|..++..++....+|.+.++
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~e 105 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIE 105 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 333444444444444444444444333
No 338
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.27 E-value=1.1e+02 Score=37.73 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHH---HHHHHhhcCCCCC
Q 001953 851 CKTANEVIKSLTV---QLKKMAEKSPEGA 876 (992)
Q Consensus 851 ~~~ake~iksLt~---qlk~~~e~lp~~~ 876 (992)
.-+|+|++..|.. +|+++.+++|+-.
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567888877766 7888888888864
No 339
>PRK05560 DNA gyrase subunit A; Validated
Probab=39.27 E-value=9.9e+02 Score=31.06 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=64.8
Q ss_pred EeCCcEEEEEEcCCcEEEEeCCCCCcc---CCCCCCCccccEEeeecCCCcEEEEEecC-----cEEEEEEcCCcEEEEc
Q 001953 250 ACGARHAVLVTKQGEIFSWGEESGGRL---GHGREADVSHPQLIEILSGVNVELVACGE-----YHTCAVTRSGDLYTWG 321 (992)
Q Consensus 250 a~G~~hs~~Lt~dG~Vy~WG~N~~GqL---G~g~~~~~~~P~~V~~l~~~~I~~Va~G~-----~hs~aLT~dG~VysWG 321 (992)
.....+.+++|+.|++|..-...--.. +.|.. .-..+....+.+|+.+.+-. ...+++|.+|.+.---
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRP----IVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeE----HHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 445577889999999999965422111 12211 11123334566777776643 4578899999776543
Q ss_pred CCCCCCCccCCCCCccccccceeccCCCCCcEEEEEE--CcceeEEEecCCeEEEEecCCC
Q 001953 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC--GLWHTAVVTSAGHLFTFGDGSF 380 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Vac--G~~hs~aLT~dG~Vy~wG~n~~ 380 (992)
...+....-+ | .......++..++.+.. ...+.+++|++|++|.+--..-
T Consensus 621 l~~~~~~~r~-G--------~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 621 LSEFSNIRSN-G--------IIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred hHHhhhcccC-C--------ceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 3322100000 0 00101113334554433 3456899999999999965443
No 340
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.19 E-value=1e+02 Score=36.49 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=29.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.=++++..+.|.+++.+|++++++|..+.++.. +.+++++++.
T Consensus 237 ~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~ 279 (406)
T PF02388_consen 237 ELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELE 279 (406)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHH
Confidence 346677788888899999988888888765544 4555555543
No 341
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=39.14 E-value=2.9e+02 Score=34.24 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=16.7
Q ss_pred EeecCcEEEEEeCCCcEEEEeC
Q 001953 474 VACGHDLSVALTTSGHVYTMGS 495 (992)
Q Consensus 474 Ia~G~~htvaLT~dG~Vy~wG~ 495 (992)
...+..+.-+..-+|.+|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4456667777777899999995
No 342
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=39.11 E-value=6.7e+02 Score=29.02 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=13.3
Q ss_pred ceeEEEecCCeEEEEecC
Q 001953 361 WHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 361 ~hs~aLT~dG~Vy~wG~n 378 (992)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665568999999953
No 343
>PRK14163 heat shock protein GrpE; Provisional
Probab=39.02 E-value=2.9e+02 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
+.|.+++..|++++++|+.+.....++.+.++|
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rk 75 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRR 75 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333344333333
No 344
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=38.96 E-value=2.1e+02 Score=30.15 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
++|+-|.++.++..+....||.+.+.. -.-.+.|--|+|=|.-+...+.-+||.+|++.
T Consensus 24 ~iravV~~ie~~~r~iq~~L~~vhq~~-------~~i~k~~~~are~~~~~kq~~~~LaE~~~~~q 82 (226)
T KOG3067|consen 24 KIRAVVDEIEEKLREIQLLLQNVHQNE-------NLIPKECGLAREDLENIKQKYRMLAELPPAGQ 82 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-------ccchHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 455556666666555555555554411 01234566677777777778889999999886
No 345
>PLN02400 cellulose synthase
Probab=38.92 E-value=17 Score=47.26 Aligned_cols=57 Identities=18% Similarity=0.621 Sum_probs=41.9
Q ss_pred ccccccCcCCCCCCCCCcccc---cccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 594 VSSVDHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 594 v~~~d~s~C~~C~~~Fsf~r~---rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+......+|+.|+..-+.+.. ---|..|+..+|..|+..- .......|+.|....++
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYE---------RkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYE---------RKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhhee---------cccCCccCcccCCcccc
Confidence 334455579999888766544 2458999999999998632 45667889999988774
No 346
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.85 E-value=1.3e+02 Score=37.05 Aligned_cols=14 Identities=21% Similarity=0.276 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q 001953 853 TANEVIKSLTVQLK 866 (992)
Q Consensus 853 ~ake~iksLt~qlk 866 (992)
.+++.++...++||
T Consensus 244 ~~~~~~~~~~~~lk 257 (555)
T TIGR03545 244 NDKKQLKADLAELK 257 (555)
T ss_pred HhHHHHHHHHHHHH
Confidence 33444444444333
No 347
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=38.83 E-value=2.2e+02 Score=27.31 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=36.7
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~q 864 (992)
.+.++-+.|++||++||.-++.-+.++..-....-+--..+.+-+.-...-.++.|+.-.-+|-.|+.
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~d 72 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDD 72 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHH
Confidence 45667788899999999887766665554443333222222222222222334445554555555553
No 348
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=38.77 E-value=2.3e+02 Score=28.64 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 826 LEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
-+.+++.++++.++....|+.++.
T Consensus 59 ~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 59 YQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 349
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=38.71 E-value=73 Score=30.46 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=38.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
..+.++.-|..+.|+.++.+|++...++|+.+..++-++++..+-
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999998888877776554
No 350
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=38.62 E-value=1.2e+02 Score=38.17 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHH
Q 001953 837 LKTVTAIAEDEAEKCKTA-----NEVIKSLTVQLK 866 (992)
Q Consensus 837 ~~~~~~~~~~~~~~~~~a-----ke~iksLt~qlk 866 (992)
||+-..+++.|.+|.--- |+=|.+|+.|+|
T Consensus 671 LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik 705 (762)
T PLN03229 671 LKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIK 705 (762)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 445555666666655432 788888888766
No 351
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=38.47 E-value=69 Score=38.19 Aligned_cols=84 Identities=24% Similarity=0.274 Sum_probs=57.6
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELE------------------------RTSKQLKTVTAI----- 843 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~----- 843 (992)
...-+.-.++|.+++|-+-|++|+.+|+..||....|-. +..|.|.+..++
T Consensus 16 ~~Kft~~etldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~PfL 95 (705)
T KOG0639|consen 16 PFKFTILETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLIPFL 95 (705)
T ss_pred CeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHhhhh
Confidence 344556678899999999999999999999987654322 223444444443
Q ss_pred HHHHHHHhhhhHHHHHHHHH-HHHHH----hhcCCCCC
Q 001953 844 AEDEAEKCKTANEVIKSLTV-QLKKM----AEKSPEGA 876 (992)
Q Consensus 844 ~~~~~~~~~~ake~iksLt~-qlk~~----~e~lp~~~ 876 (992)
-.|.-+.|-+|-|-.|-+|+ +|..+ |..||++.
T Consensus 96 sqehQqqvlqAvEraKqvT~~eln~iig~qaq~ls~g~ 133 (705)
T KOG0639|consen 96 SQEHQQQVLQAVERAKQVTMSELNAIIGLQAQHLSHGV 133 (705)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcccccccCCCCC
Confidence 24666778888888888887 45544 44577763
No 352
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.35 E-value=2.9e+02 Score=27.22 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.|..|+..++.++..+..+......+++.-.+.+++|-.--..|--||-++-+-|..|-.
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~ 66 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLRE 66 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444434444444444333333333
No 353
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=38.25 E-value=61 Score=32.10 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=35.5
Q ss_pred CCCCCcccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 787 SARSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (992)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (992)
|+.+.....-++..++|.+++|...|++|..+|+..|+....|-...+
T Consensus 10 ~~~~~q~~KfT~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emq 57 (135)
T PF03920_consen 10 PSQPPQPFKFTTSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQ 57 (135)
T ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHH
Confidence 333333445667788999999999999999999999988765443333
No 354
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=38.18 E-value=1.6e+02 Score=31.27 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (992)
..|++..|++.|+.--+.-++.+..|+.+..-+-.|.-+|++
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~q 113 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQ 113 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677766666666666666666666666666666654
No 355
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.04 E-value=91 Score=35.21 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=19.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELT 820 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (992)
-.|++.|+.|.+|..+|+.+|+.|+
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888887773
No 356
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=38.02 E-value=62 Score=29.22 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=34.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+.+.+.-+.|.+..-++.-.++.|..++...+..+|.++++|++..
T Consensus 32 i~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~EkLdel~ 78 (80)
T PF11488_consen 32 IDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQEKLDELL 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHhHHHHh
Confidence 34444555555555555555788999999999999999999988865
No 357
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.00 E-value=12 Score=38.26 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=24.0
Q ss_pred ceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 001953 52 LDLICKDKDEAEVWLVGLKALITRGTH 78 (992)
Q Consensus 52 LdLi~~~~~ea~~W~~gL~~l~~~~~~ 78 (992)
.||++...+|...|++|||.||.-.++
T Consensus 114 ~~L~t~h~~E~~~WmvGVKRLI~~~r~ 140 (157)
T PF07304_consen 114 VDLMTDHVDECGNWMVGVKRLIAMARN 140 (157)
T ss_dssp HHHHHSSHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHhccHHHhhhHHHHHHHHHHHHHh
Confidence 589999999999999999999986543
No 358
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.86 E-value=1.8e+02 Score=30.50 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 001953 854 ANEVIKSLTVQLKKMA 869 (992)
Q Consensus 854 ake~iksLt~qlk~~~ 869 (992)
++.-++.|..|.+.+.
T Consensus 173 ~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555543
No 359
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.64 E-value=53 Score=31.45 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=29.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
++.+.+.-..|.+||..|+.++..|.+.=..+..|-+.+.+.+.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566667777777777776666666666666666665544
No 360
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.48 E-value=1.3e+02 Score=32.39 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=32.3
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV---TAIAEDEAEKCKT 853 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 853 (992)
+...++.++.|..+|+.++++...+.+..+.+..+.+|+.++. ...+.||.+|...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666655555555555543 2345555555443
No 361
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.46 E-value=1.3e+02 Score=38.10 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=35.3
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (992)
.-.|.+|++...|+.|+.+||.+.+..++++...+.|++.+.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999888888888775443
No 362
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.35 E-value=1.4e+02 Score=40.50 Aligned_cols=44 Identities=16% Similarity=0.333 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
..+.|.++++.+..++..+..+.++.+.++++..++++++-..+
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 644 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI 644 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555554444444333
No 363
>PRK14140 heat shock protein GrpE; Provisional
Probab=37.34 E-value=2.1e+02 Score=30.27 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
|.+++.+|++++.+|+.+....-++++-+++..+.-...++ +.+.-+.+++++-.|.+
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~-~~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE-KYRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55666677777777766666666667666666665554433 33444566666665554
No 364
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.28 E-value=1.4e+02 Score=40.29 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~ 824 (992)
|.+|+.+++.+...+..++.
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~ 845 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 365
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.11 E-value=2.4e+02 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=31.9
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
|...-+.+..+.++|+.+++.+..+....+.++++++..++|.-.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445566677777778888888888888888887777766543
No 366
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.10 E-value=1.1e+03 Score=31.10 Aligned_cols=202 Identities=14% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCcEEEEEecCcE--EEEEEcCCcEEEEcCCCCCCCccCCCCCccccccc---eeccCCCCCcEEEEEECcceeEEEecC
Q 001953 295 GVNVELVACGEYH--TCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPR---KVSGNLDGIHLSYISCGLWHTAVVTSA 369 (992)
Q Consensus 295 ~~~I~~Va~G~~h--s~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~---~v~~~l~~~~Iv~VacG~~hs~aLT~d 369 (992)
...|..|+.+..+ .++++.+|.|+.|-....+................ ..........+.+++.-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCce-EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCC
Q 001953 370 GHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWH-TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGR 448 (992)
Q Consensus 370 G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~h-t~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQ 448 (992)
.. -..+..-.+...+.........+....+.-.....++..+ .++- +.+|++| .
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q--------------~~~G~v~--------~ 560 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQ--------------TNDGKVF--------Q 560 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEE--------------ECCCEEE--------E
Q ss_pred CCCCCCCCcccceeeccCCCCCeEEEeecCc---EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEE
Q 001953 449 LGHGDKEPRLFPECVAPLIDENICQVACGHD---LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEE 525 (992)
Q Consensus 449 LG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~---htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~ 525 (992)
+-........ ...+.+-..--....-+.. +.+.|+.+|++|+=+ .+....+..
T Consensus 561 ~~~~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tS 616 (928)
T PF04762_consen 561 LSSDGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTS 616 (928)
T ss_pred eecCCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCce
Q ss_pred EEEcCCEEEEEEcCCcEEEE
Q 001953 526 VACGAYHVAALTSTSKVYTW 545 (992)
Q Consensus 526 Ia~G~~Ht~aLt~~G~Vy~W 545 (992)
++....|-++.|....+...
T Consensus 617 F~v~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 617 FAVTDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EEEEcCEEEEEecCceEEEE
No 367
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=37.08 E-value=1.6e+02 Score=35.17 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQ--------------LKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+.|+.+|+.--+...++|+..++|+.+++.. ++.|-.++.-|.+..|+|+--...|..|.+.+++-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6788899988888888888888887777654 45556667778888888888777787777777766
Q ss_pred CCCCC
Q 001953 872 SPEGA 876 (992)
Q Consensus 872 lp~~~ 876 (992)
|--+.
T Consensus 107 l~~~~ 111 (604)
T KOG3564|consen 107 LKCDI 111 (604)
T ss_pred Hhccc
Confidence 65554
No 368
>PRK14146 heat shock protein GrpE; Provisional
Probab=37.07 E-value=1.9e+02 Score=31.31 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
..|.+|+..|++++++|+.+.-..-++++.+++..+.-...++..+ ..+.+++++-.|.+
T Consensus 57 ~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a-~e~~~~~lLpv~Dn 116 (215)
T PRK14146 57 TSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEA-VKSLVSGFLNPIDN 116 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3445566666666666666666666666666555555444443332 22444444444433
No 369
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.06 E-value=6.6 Score=43.39 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=29.2
Q ss_pred CcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 600 s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
..|..|-..- .---|--||++||++|-.... ..+.+ |+-|..+.+..
T Consensus 240 ~kC~LCLe~~----~~pSaTpCGHiFCWsCI~~w~--------~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 240 RKCSLCLENR----SNPSATPCGHIFCWSCILEWC--------SEKAE--CPLCREKFQPS 286 (293)
T ss_pred CceEEEecCC----CCCCcCcCcchHHHHHHHHHH--------ccccC--CCcccccCCCc
Confidence 3466665321 122377899999999954222 23444 99998876653
No 370
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=2.6e+02 Score=33.94 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
.+..|..+-+.|-++|+.+.++++..-.+|..-|++-..|+|==.+|...||.+..+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 356778888888899999999999999999999999999999999999999988765
No 371
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=6.8 Score=40.39 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=32.1
Q ss_pred cCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
.|..|-..|.-.. ----+||++||..|-.... +-.++|+-|..++..++
T Consensus 133 ~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~al----------k~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 133 KCPICLDSVSEKV--PVSTKCGHVFCSQCIKDAL----------KNTNKCPTCRKKITHKQ 181 (187)
T ss_pred CCCceecchhhcc--ccccccchhHHHHHHHHHH----------HhCCCCCCcccccchhh
Confidence 4666665554211 1224799999999965331 44578999998877664
No 372
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.91 E-value=2.9e+02 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=37.5
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.+..++.++.|.+|+..++.+|.......+..+.+-+++.++|-+
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999998888888888888777777766643
No 373
>PF14282 FlxA: FlxA-like protein
Probab=36.83 E-value=1.5e+02 Score=28.33 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=12.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTS 821 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~ 821 (992)
...-+.|++.++.|+.|+++|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444555555555555555555
No 374
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=36.73 E-value=1.6e+02 Score=31.09 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
|.+|+..+.+..++|..+-+..+.+...+..+|+.++.-
T Consensus 114 LeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdK 152 (205)
T KOG1003|consen 114 LEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDK 152 (205)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 375
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.62 E-value=2.4e+02 Score=30.28 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=8.0
Q ss_pred ccchHhhhhhHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLR 813 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~ 813 (992)
...+++..+.|.+++..++
T Consensus 95 lp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 376
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=36.51 E-value=29 Score=27.96 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 602 CSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 602 C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
|..|+. ..-....--|-.|+..|+..|........... ...+.|+.|..
T Consensus 2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~----~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP----SGDWYCPNCRP 50 (51)
T ss_dssp BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH----SSSBSSHHHHH
T ss_pred CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCC----CCcEECcCCcC
Confidence 667776 44455677899999999999988554322221 22899999965
No 377
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=36.51 E-value=3.7e+02 Score=26.35 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=55.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
..+|+..|.....-|..++.=|..+.+..+.+..+++.-|-++=-+-.+++.++..+++.+-.+.+|.++.+.--|||
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl 99 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERL 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777777777777777777777777777776555444443
No 378
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.46 E-value=1.9e+02 Score=35.40 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=26.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (992)
++.....+++++.+|+++++.+.++.+.....+...++..+......++|-
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~ 222 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKY 222 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666655544444444444443333333333
No 379
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=36.43 E-value=1.6e+02 Score=38.55 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=46.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~q 864 (992)
+++|........+||....++++.|+...+..+.+.+...+.......-+..|..|..++++.+|.-...
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk 805 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDK 805 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666666777776666777766666666666666666666666666777777776666644443
No 380
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=36.39 E-value=1.4e+02 Score=26.64 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
++-+-+|-++|++|..+-++++.+.+.....++ -|++|+++.+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~q----AAk~eaarAn 66 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQ----AAKDEAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhHHHHHH
Confidence 344555555666666665555555554443333 3556666544
No 381
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.30 E-value=55 Score=36.73 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEEL 819 (992)
Q Consensus 806 ~~~~~~~~~~~~~~ 819 (992)
.+|-++||.|+..|
T Consensus 72 ~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 72 EYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 382
>PHA02713 hypothetical protein; Provisional
Probab=36.26 E-value=1.7e+02 Score=36.21 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=12.2
Q ss_pred EEEEEEcCCcEEEEeCC
Q 001953 255 HAVLVTKQGEIFSWGEE 271 (992)
Q Consensus 255 hs~~Lt~dG~Vy~WG~N 271 (992)
+..+..-+|+||++|..
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 34455568999999964
No 383
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=36.18 E-value=1.9e+02 Score=24.91 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+..++.+|+.|..++-+-..+|..+.+-+-.-|....+-|+|--+|-.-+..+..+|+.|
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELakl 67 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788888888888888887777666666666666665444433333333444443
No 384
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.15 E-value=1e+02 Score=37.25 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=42.5
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
..+|.-+...|+-||.++..++++|++...+...||.+++-.|+.|-. +-+|+-
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~-~~~El~ 148 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR-QLEELR 148 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH-HHHHHH
Confidence 345666677899999999999999999999999999999888877653 334443
No 385
>PF15409 PH_8: Pleckstrin homology domain
Probab=36.14 E-value=49 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 37 EKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 37 ~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
.++.++|.|-=|.+---|=|+|++|++.||..|+.
T Consensus 53 ~~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 53 NKKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred cCCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 34567777777888889999999999999999985
No 386
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=36.10 E-value=8.7e+02 Score=29.51 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=48.9
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCc-EEEEEEcCCcEEEEcCCCCCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEY-HTCAVTRSGDLYTWGDGTYNS 327 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~-hs~aLT~dG~VysWG~n~~~~ 327 (992)
|.||..|.++.+..|..+.=-...+ +..+...|..|..+++ -.+-=+.+|.++.|+.+.+
T Consensus 217 it~Gk~H~~Fw~~~~~~l~k~~~~f-----------------ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-- 277 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLRGGSLVKRQGIF-----------------EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN-- 277 (626)
T ss_pred EEeCCceEEEEEccCCceEEEeecc-----------------ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc--
Confidence 7899999988887775543321111 1111123444444433 3333456788999987633
Q ss_pred CccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEE
Q 001953 328 GLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFT 374 (992)
Q Consensus 328 GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~ 374 (992)
++. +-+.+.-|.-+++++..+|.|.+
T Consensus 278 ---------------~~~------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ---------------RIS------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ---------------eEE------eEeeecCCceEEEEEecCccEee
Confidence 111 11224556777888888887777
No 387
>PF14282 FlxA: FlxA-like protein
Probab=36.09 E-value=2.8e+02 Score=26.39 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=37.0
Q ss_pred ccccchHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRA----QVEELTSKSEHLEAELERTSKQLKTVTAIAEDE 847 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (992)
..++.|++.-..|.++|..|.. -.+.-.++.++...+|+.+..+|..+-....++
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888888877 234555666666667777776666555444433
No 388
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=36.06 E-value=86 Score=28.63 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~ 822 (992)
|..+++.|++|+..+.++
T Consensus 5 l~~~~~~L~~~~~~l~~~ 22 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKE 22 (83)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 389
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.91 E-value=1.8e+02 Score=26.85 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHH
Q 001953 810 IKLRAQVEELTSKSEHLEAELERTSKQLKTVTA-IAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ake~iksLt 862 (992)
.+++.|...|.+.-+++..|.+..++++|.+-. .=-||..+.-....||..|-
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHHH
Confidence 344444444444444444444444444444322 22356667777777777664
No 390
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=35.60 E-value=23 Score=40.14 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=40.3
Q ss_pred EeCCcceeEEEeeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCC-CCCCcccChhhHHhh
Q 001953 579 VCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPS-INKPYRVCDDCFTKL 657 (992)
Q Consensus 579 acG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~-~~kp~RvC~~C~~~l 657 (992)
.||+...+.+....-..+.-.-.|..|+..+.+. |..|.+||. +.+.....+... .....-+|+.|..-|
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 4565554443211111223344588888766554 678888885 223322222211 123556899999888
Q ss_pred hccc
Q 001953 658 KKTD 661 (992)
Q Consensus 658 ~~~~ 661 (992)
+-..
T Consensus 263 K~~~ 266 (309)
T PRK03564 263 KILY 266 (309)
T ss_pred eecc
Confidence 7764
No 391
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.58 E-value=66 Score=31.38 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=31.0
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
.++++|+++-|.|+-+|..|+.|-+.+..+-+....+|++.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888888888777766666655543
No 392
>PF13166 AAA_13: AAA domain
Probab=35.42 E-value=1.6e+02 Score=37.15 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=35.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLE-----AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
++.+....+..++++.++..+.+.|+.+..... ..+....++++++-........+.+.+++-|+.++.+++++.
T Consensus 372 i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 451 (712)
T PF13166_consen 372 IDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELE 451 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555554444444433221 222222333333222222333334455666666666666665
Q ss_pred hcCC
Q 001953 870 EKSP 873 (992)
Q Consensus 870 e~lp 873 (992)
.++-
T Consensus 452 ~~~~ 455 (712)
T PF13166_consen 452 AQLK 455 (712)
T ss_pred HHHh
Confidence 5543
No 393
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.34 E-value=2e+02 Score=32.69 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=54.8
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHH---HHHHHHHhh----hhHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEH---LEAE-LERTSKQLKTVTAI---AEDEAEKCK----TANEVIKSL 861 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~---~~~~~~~~~----~ake~iksL 861 (992)
.-.+.|.++...|.+|-.+||.++..|+..... ++.+ +..|-+++.+|-.. ..+|-+++. -=-|-|-+|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999999988888744332 2222 33455666666433 334444433 336788889
Q ss_pred HHHHHHHhhcCCC
Q 001953 862 TVQLKKMAEKSPE 874 (992)
Q Consensus 862 t~qlk~~~e~lp~ 874 (992)
.+|+-++-.|+-.
T Consensus 240 lsqivdlQ~r~k~ 252 (306)
T PF04849_consen 240 LSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887766544
No 394
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.19 E-value=18 Score=46.92 Aligned_cols=56 Identities=23% Similarity=0.517 Sum_probs=40.9
Q ss_pred cccccCcCCCCCCCCCcccc---cccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 595 SSVDHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 595 ~~~d~s~C~~C~~~Fsf~r~---rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
......+|..|+..-+.+.. ---|.-||..+|..|+..- .......|+.|....++
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYE---------r~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYE---------RKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhh---------hhcCCccCCccCCchhh
Confidence 33445578899887766544 2458899999999998622 45667889999888774
No 395
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=35.00 E-value=1.1e+02 Score=29.07 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
.+||.-|+.|+++|.++-...+.|-..+ |.-+-.|.++.|++||-
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lL----------------k~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLL----------------KTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhCCHHHHHHHHHhcc
Confidence 6888888888888887766655532221 33456778888887764
No 396
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.90 E-value=77 Score=32.85 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKS 823 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~ 823 (992)
++++...+|+..||-++++|+.+.
T Consensus 99 ~kee~~~~e~~elr~~~~~l~~~i 122 (181)
T KOG3335|consen 99 KKEEKRKQEIMELRLKVEKLENAI 122 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888888888733
No 397
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=34.74 E-value=1.6e+02 Score=33.22 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 817 EELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
++....+.....+|+...+++.+++.. .|.+...+..|+.||.+...+|++-.|+-..
T Consensus 80 esal~L~~~L~~eI~~f~~~l~~~~~~-~e~~~~~~~~~~~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 80 ESALPLTKDLRREIDSFDERLEEAAEK-EELSKSSENQKESIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 577778888899999999999988742 2226667788999999999999988886544
No 398
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=34.74 E-value=1.4e+02 Score=33.23 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSK----------QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
.+..++.++++++..++.+.+....++++.++ .++.+-.......++.+.++.-++.+-.++..+.-+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP 140 (322)
T TIGR01730 61 DYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAP 140 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECC
Confidence 34445555555555555544444444444333 22333333333333444555555555555555555555
Q ss_pred CC
Q 001953 874 EG 875 (992)
Q Consensus 874 ~~ 875 (992)
-.
T Consensus 141 ~~ 142 (322)
T TIGR01730 141 FD 142 (322)
T ss_pred CC
Confidence 44
No 399
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.72 E-value=2.4e+02 Score=33.91 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 829 ELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+|-.+++|++...-...|.-+-..|+|+-=.-||++|+||-+|
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455555544344444445566777777889999998877
No 400
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.69 E-value=2.9e+02 Score=25.54 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt 862 (992)
-+.+||++|.+.-..|.++.+..+. .....-...+|-+.+.++|-|-|+++.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~a-------r~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEA-------RANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333333 333333344556677777777777764
No 401
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=34.62 E-value=2.1e+02 Score=32.34 Aligned_cols=21 Identities=38% Similarity=0.343 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 001953 835 KQLKTVTAIAEDEAEKCKTAN 855 (992)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~ak 855 (992)
++.+++.+-+++|++|.|++-
T Consensus 147 k~aE~a~aka~aEA~k~Ka~a 167 (387)
T COG3064 147 KKAEAAKAKAAAEAAKLKAAA 167 (387)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 444455567777777766553
No 402
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.49 E-value=94 Score=38.95 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=17.2
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
++..+..|++|+.-|.-+.+.|..+..--...+...+.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 34444555555555555544444443333333333333
No 403
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=34.43 E-value=1.5e+02 Score=34.64 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=50.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELT----------SKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV- 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~- 863 (992)
...|++.|..|++|..++++.++.|+ -+..++..|+++-+-.+.++.....|+-.|.+-+..+-+.+.+
T Consensus 57 l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l 136 (459)
T KOG0288|consen 57 LNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDL 136 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 57788999999999888877544443 3444444555555556677888888898998888776665544
Q ss_pred HHHHH
Q 001953 864 QLKKM 868 (992)
Q Consensus 864 qlk~~ 868 (992)
-||+.
T Consensus 137 ~~~~~ 141 (459)
T KOG0288|consen 137 GLKDL 141 (459)
T ss_pred chhhh
Confidence 34443
No 404
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.36 E-value=90 Score=32.76 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=28.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
|..++.|+.|..|+.+|..+++.|....+..+.+.+.-.+...
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~ 133 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFN 133 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777766666665555543
No 405
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=34.20 E-value=2.3e+02 Score=31.22 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=40.9
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHhhcCCCCC
Q 001953 807 QEIIKLRA--QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK---KMAEKSPEGA 876 (992)
Q Consensus 807 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk---~~~e~lp~~~ 876 (992)
+|+..||+ |-.++.......+.++......++++-..+..|.....-+||.+.++-.|++ .|.+.+|+..
T Consensus 6 ~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l 80 (243)
T PF07160_consen 6 KELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL 80 (243)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44555554 4455555555566666666777776666666666777778888888777644 5667788764
No 406
>PRK09039 hypothetical protein; Validated
Probab=34.14 E-value=2.8e+02 Score=32.06 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=8.5
Q ss_pred chHhhhhhHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQV 816 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~ 816 (992)
+....-..|++||..||+|.
T Consensus 134 e~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 407
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=34.11 E-value=77 Score=28.04 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=0.0
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
+|+++-+.-.+|-..|++||.+|.++-...+.+++++.+
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs~ 70 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLSQ 70 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 408
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=34.07 E-value=78 Score=41.29 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+.+|+++|+++++.|+.+.+..+.+|..-.=.-|---.+...|.+|....++-|+.|.++|+.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555444444444433332111111112345667777777888888888877765
No 409
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.07 E-value=1e+02 Score=39.02 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=17.8
Q ss_pred CCCCcccccchHhhhhhHHHHHHHHHH
Q 001953 788 ARSSAVTIDDSKQMNDSLNQEIIKLRA 814 (992)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (992)
+|........+++.||.|.-.+..|-.
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677788888888766666554
No 410
>PHA03098 kelch-like protein; Provisional
Probab=33.89 E-value=4.3e+02 Score=32.02 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=11.6
Q ss_pred CcEEEEEeCCCcEEEEeC
Q 001953 478 HDLSVALTTSGHVYTMGS 495 (992)
Q Consensus 478 ~~htvaLT~dG~Vy~wG~ 495 (992)
..|+++ .-+|.||++|.
T Consensus 381 ~~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGG 397 (534)
T ss_pred ccceEE-EECCEEEEECC
Confidence 345544 45789999996
No 411
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.89 E-value=2.5e+02 Score=32.70 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED-EAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ake~iksLt~qlk~~~e 870 (992)
++..++.++.+++.+-.....+++.++.++..+...... ..++...+++-|+.+.++|..+.+
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333322222 223344455555555555444433
No 412
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.84 E-value=1.8e+02 Score=37.36 Aligned_cols=72 Identities=28% Similarity=0.297 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
..+..|..|+.+|++..++|......-..+++.++-+++|+-..+.+.-.+...+++-=.-+..||+.|.+.
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~ 660 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444445555555555555555555555555555555555566665444
No 413
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.79 E-value=1.4e+02 Score=35.51 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (992)
..+..++.+|..+.++|..+.+....+..+..|+|..+...
T Consensus 25 ~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~ 65 (429)
T COG0172 25 ALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKR 65 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55677888888888888888888888888888888755543
No 414
>PRK14157 heat shock protein GrpE; Provisional
Probab=33.66 E-value=1.9e+02 Score=31.43 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=17.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAE 829 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (992)
+.|++..+.+...+.++++..++.+++.+.+..+
T Consensus 87 ~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~ 120 (227)
T PRK14157 87 GQAKKEAAEYLEALQRERAEFINYRNRTQKEQDR 120 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555444433
No 415
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.62 E-value=58 Score=34.36 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=3.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (992)
...+.+.+..+.+.|..+-.+++.|..+....+..|..++
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~ 122 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELE 122 (194)
T ss_dssp -------------------------------HHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 4455556665555555555555555444444444443333
No 416
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=33.61 E-value=42 Score=26.23 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 826 LEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
+..+...+++.||..+++.+|+|+|.-
T Consensus 3 Eaak~kaaKe~IKsLt~QlK~maekl~ 29 (39)
T PF13713_consen 3 EAAKCKAAKEVIKSLTAQLKDMAEKLP 29 (39)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCc
Confidence 456678889999999999999999863
No 417
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.59 E-value=2e+02 Score=36.35 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=41.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE 847 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (992)
+..|...++...+++..|+.++..|++.....+.+.....+.+++++......
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777888888888888888888888888888888888776665
No 418
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.45 E-value=1.6e+02 Score=36.43 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.7
Q ss_pred HhhhhHHHHHHHHHHHHHHh
Q 001953 850 KCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 850 ~~~~ake~iksLt~qlk~~~ 869 (992)
+.++|+++-+.++.+|+++.
T Consensus 373 R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 36788999999999999843
No 419
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=33.45 E-value=7.9e+02 Score=31.90 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=70.2
Q ss_pred CcceeEEEecCCe-EEEEecCCCCCCCCCC-CcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCC
Q 001953 359 GLWHTAVVTSAGH-LFTFGDGSFGALGHGD-HISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCG 436 (992)
Q Consensus 359 G~~hs~aLT~dG~-Vy~wG~n~~GqLG~g~-~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG 436 (992)
+....++++.+|+ |+++|.+. -.-+-+ ......|.-+.. .+..|..|+|-..|-+.-.+ ...=
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg--~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~------------~~tv 78 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDG--DIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSE------------QNTV 78 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCC--ceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeec------------cceE
Confidence 4455566676664 55555432 111111 111245555543 45678888888776655521 2223
Q ss_pred eEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecC
Q 001953 437 KLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDG 516 (992)
Q Consensus 437 ~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~ 516 (992)
.+|.++..+.+ ..+.+...+ . ..+++.-+|+..+.|+.+++.--....+...-....+
T Consensus 79 ~~y~fps~~~~--------~iL~Rftlp----~----------r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 79 LRYKFPSGEED--------TILARFTLP----I----------RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred EEeeCCCCCcc--------ceeeeeecc----c----------eEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 46666655432 111111111 1 1234444555666665554332111111111111111
Q ss_pred CcCCCCEEEEEE--cCCEEEEEEcCCcEEEEEc
Q 001953 517 EIAESFVEEVAC--GAYHVAALTSTSKVYTWGK 547 (992)
Q Consensus 517 ~l~~~~V~~Ia~--G~~Ht~aLt~~G~Vy~WG~ 547 (992)
....|..|.. -....++.+-+|+|++|-.
T Consensus 137 --h~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 137 --HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred --cCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 1223444443 3456677788999999964
No 420
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=33.42 E-value=24 Score=40.01 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=32.5
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCC-CCCCcc--cChhhHHhhhcccc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPS-INKPYR--VCDDCFTKLKKTDT 662 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~-~~kp~R--vC~~C~~~l~~~~~ 662 (992)
.-.|..|+..+.+. |..|.+||. +++...-.+... ....+| +|+.|..-|+-...
T Consensus 210 yL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~ 267 (305)
T TIGR01562 210 YLSCSLCATEWHYV--RVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQ 267 (305)
T ss_pred EEEcCCCCCccccc--CccCCCCCC-------CCceeeEeecCCCCCcceEEeeccccccchhhhcc
Confidence 33588888766554 677888875 123222222211 123456 99999988887643
No 421
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=33.38 E-value=2.8e+02 Score=24.60 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=31.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
+..+.+..+.+..||...+.+++.+...++.. ..+|+..-+.|...|..+.+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERR 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666655554 23444445555555554444444433
No 422
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=33.24 E-value=3.7e+02 Score=31.13 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=29.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
+..-+.+..-+.+|++++..|.++.+..+.+..++.+++++.+ -+++|.+
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v-~~K~~~E 178 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFV-NAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3344444566666666666666666666666666666666655 4444443
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.24 E-value=1.9e+02 Score=39.73 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
+.+.-..|.+++.++..+++.+..+.+..+.++++.+..++.+-++..+++.=.+..+| |+.|..||+++..+++...
T Consensus 742 ~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~e-i~~l~~qie~l~~~l~~~~ 819 (1311)
T TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLQGSD 819 (1311)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc
No 424
>PLN02943 aminoacyl-tRNA ligase
Probab=33.20 E-value=84 Score=41.42 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
+..|+.||++|++.|+.+.+..+.+|..-.=.-+---.+..+|-+|.+..++-|+.|.+.|+++.+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555554444444444333211111112245667777888888888888888777764
No 425
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=32.97 E-value=79 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CcEEEEEecC-cEEEEEEcCCcEEEE
Q 001953 296 VNVELVACGE-YHTCAVTRSGDLYTW 320 (992)
Q Consensus 296 ~~I~~Va~G~-~hs~aLT~dG~VysW 320 (992)
..+++|++|. ....+|+.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 899999999999864
No 426
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=32.94 E-value=86 Score=41.53 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
+..|+.||++|++.|+++.+..+.+|..-.=.-+---.+...|-+|....++-|..|.+.|+++.+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444443332221111112234555666666677777777776666653
No 427
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.84 E-value=3.6e+02 Score=27.67 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQV 816 (992)
Q Consensus 804 ~~~~~~~~~~~~~ 816 (992)
.|..+..+|..|-
T Consensus 54 ~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 54 LLREDNEQLETQY 66 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 428
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=32.77 E-value=3.6e+02 Score=29.79 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=35.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK-TANEVIKSLTVQLKKMA 869 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ake~iksLt~qlk~~~ 869 (992)
++..+...+-..+|+.....+.+.....+.+.++.+++++++-....++-+|.. .-.+|++-+..+.-+++
T Consensus 81 ~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~ 152 (256)
T PF14932_consen 81 QEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELA 152 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444455555555555566666666666655554444333 33444444444444444
No 429
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=32.74 E-value=4.6e+02 Score=25.27 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAEL-----ERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
...+|+......++|.+.+...+.+...+.+...++ .++++..++-..-+++|+. +-|++++..=..+..+|.
T Consensus 9 l~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e--~ea~eI~~~ae~~~~~~~ 86 (108)
T COG2811 9 LREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAE--EEAEEILAEAEKEASAIL 86 (108)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 456777777788888877775444433333333222 2233334444444555554 455666666666665555
Q ss_pred hc
Q 001953 870 EK 871 (992)
Q Consensus 870 e~ 871 (992)
-+
T Consensus 87 ~k 88 (108)
T COG2811 87 SK 88 (108)
T ss_pred HH
Confidence 43
No 430
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.67 E-value=1.9e+02 Score=33.91 Aligned_cols=68 Identities=16% Similarity=0.334 Sum_probs=36.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSE----HLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+++...-..++.++.+|.+++..+.+.-. .-...++.++..+++......+--+|.......|+.+|.
T Consensus 21 ~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~ 92 (383)
T PF04100_consen 21 SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITR 92 (383)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666554443322 122345555656666655555555555555555555554
No 431
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.62 E-value=4e+02 Score=28.47 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001953 839 TVTAIAEDEAE 849 (992)
Q Consensus 839 ~~~~~~~~~~~ 849 (992)
++...|.+|++
T Consensus 133 ~i~~~A~~eae 143 (205)
T PRK06231 133 ELEKEANRQAN 143 (205)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 432
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.59 E-value=1.5e+02 Score=28.73 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcC-----CCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 37 EKEYQSFSLIYND-----RSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 37 ~~~~~~fs~i~~~-----~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+.+.|.|.+++ .+.-|-|.|.++=+.|+.-|+.|+.
T Consensus 71 ~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 71 EGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 4567999999944 3667999999999999999999875
No 433
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.59 E-value=91 Score=26.62 Aligned_cols=25 Identities=48% Similarity=0.614 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELER 832 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (992)
.+..|+.+|..|....+....+++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333333333
No 434
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=8.3e+02 Score=28.19 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=45.9
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~q 864 (992)
..+......+|+.++++..++|++. ++||..-++++++-..-...+..+.++.-||.|+=..+
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt----~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRT----EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455667888999999988888876 44556666666666666677788888888887776665
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=32.43 E-value=2.6e+02 Score=33.68 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=10.6
Q ss_pred EEEcCCcEEEEcCC
Q 001953 310 AVTRSGDLYTWGDG 323 (992)
Q Consensus 310 aLT~dG~VysWG~n 323 (992)
++.-+|.||..|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999854
No 436
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.32 E-value=1.5e+02 Score=25.87 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
.++.+++.|+..|+.+-+....+.+.++++++..
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666667766666666666666666666554
No 437
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.18 E-value=20 Score=42.74 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=38.3
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
...|..|-.+..+-..- +||++||..|--...... ..+..+-|+-|++.+..++
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccccc
Confidence 34588887776543321 499999999965443332 4588899999999987754
No 438
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=32.18 E-value=2.6e+02 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=22.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELE 831 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (992)
.+.|+..|--|.++...|-.|.+...+..+.+..+++
T Consensus 132 n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 132 NDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666665555554444
No 439
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=32.04 E-value=1.5e+02 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 848 AEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 848 ~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.+|..|.-.-+..|..++.++...|-|
T Consensus 41 ~~klDa~~~~l~~l~~~V~~I~~iL~~ 67 (75)
T PF05531_consen 41 NKKLDAQSAQLTTLNTKVNEIQDILNP 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444555566666666666653
No 440
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=31.99 E-value=7.5e+02 Score=27.51 Aligned_cols=243 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred EEEEEeCCcEEEE------------------------EEcCCcEEEEeCCCCCccCCCCCCCccccEEeeec-CCCcEEE
Q 001953 246 VHNIACGARHAVL------------------------VTKQGEIFSWGEESGGRLGHGREADVSHPQLIEIL-SGVNVEL 300 (992)
Q Consensus 246 I~~Ia~G~~hs~~------------------------Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l-~~~~I~~ 300 (992)
|.-+++|.+|++= ||.|++..+-+.|.+-+|-.-....-..-.-++.. .+...+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEE
Q ss_pred EEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCC
Q 001953 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSF 380 (992)
Q Consensus 301 Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~ 380 (992)
..|-..-.+-=.+||.+-.|--. ....++..... ....-+-+.-...|-+.=+.+|.|+.|-
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR-------------~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWD---- 152 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLR-------------SLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWD---- 152 (311)
T ss_pred EeecCeEEEecCCCceEEEEecc-------------CcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEE----
Q ss_pred CCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccc
Q 001953 381 GALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFP 460 (992)
Q Consensus 381 GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P 460 (992)
|+...-.....|..... |.+++....-+..+.. ++.|.+|+|-.-. ......+.|
T Consensus 153 --l~~~~c~~~liPe~~~~-----i~sl~v~~dgsml~a~------------nnkG~cyvW~l~~------~~~~s~l~P 207 (311)
T KOG0315|consen 153 --LGENSCTHELIPEDDTS-----IQSLTVMPDGSMLAAA------------NNKGNCYVWRLLN------HQTASELEP 207 (311)
T ss_pred --ccCCccccccCCCCCcc-----eeeEEEcCCCcEEEEe------------cCCccEEEEEccC------CCccccceE
Q ss_pred eeeccCCCCCeEEE--eecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEc
Q 001953 461 ECVAPLIDENICQV--ACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTS 538 (992)
Q Consensus 461 ~~V~~l~~~~I~~I--a~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~ 538 (992)
..-...-...|.+. +-+..|.+.-..|-.|++|-... .++.+.+.+---+..--++...
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~-------------------~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD-------------------FFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC-------------------ceeeEEEeecCCceEEeeeecc
Q ss_pred CCcEEEEEcCCC
Q 001953 539 TSKVYTWGKGAN 550 (992)
Q Consensus 539 ~G~Vy~WG~N~~ 550 (992)
||+..+-|.+.+
T Consensus 269 dg~YlvTassd~ 280 (311)
T KOG0315|consen 269 DGEYLVTASSDH 280 (311)
T ss_pred CccEEEecCCCC
No 441
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=2.6e+02 Score=35.51 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=39.2
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
+..+.+++-..++.+|..++..++..-..++.+++.++++.++..-.-++--+|-+---+-+-.|+.|+.
T Consensus 640 eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 640 EEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777777777777777776665554333333333333333334444333
No 442
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=31.85 E-value=1.3e+02 Score=40.05 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=4.6
Q ss_pred HHHHHHHHhhc
Q 001953 861 LTVQLKKMAEK 871 (992)
Q Consensus 861 Lt~qlk~~~e~ 871 (992)
|..+|.+.+++
T Consensus 270 Ls~~L~~~t~~ 280 (1109)
T PRK10929 270 LSQALNQQAQR 280 (1109)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 443
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=31.85 E-value=78 Score=30.45 Aligned_cols=35 Identities=17% Similarity=0.543 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 41 ~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
+.|=|-=.++-+.|-|.|..|-++|+.|+..|+..
T Consensus 71 ~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 71 RYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred EEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 44444447788999999999999999999999975
No 444
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.47 E-value=1.6e+02 Score=32.32 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (992)
.|.+|+.++|+++..|..+-+..+.++...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444444333
No 445
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.43 E-value=2.1e+02 Score=37.22 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=42.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKS 860 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iks 860 (992)
+.|++..+.+.+++..+..++++|+..-..+.+++...+..++++.+..+++-+|-+.---.|+.
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 44444444444445555555666666666677777777778888888888888887776544433
No 446
>PRK10404 hypothetical protein; Provisional
Probab=31.39 E-value=4.4e+02 Score=25.00 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKS-EHLEAELERTSKQLKTVTAIAED 846 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 846 (992)
.+.|..|+..|-..+++|..-. +.-..+++.+++++++....+++
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~ 52 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKK 52 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777665433 33445666666666666666654
No 447
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.37 E-value=1.9e+02 Score=31.05 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
.-+.|..++..++.+|..|+.+.+..+.+++..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 448
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.37 E-value=1.4e+02 Score=35.14 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=40.8
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTAN 855 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak 855 (992)
..+-+|+++...|.++++.|+.+++...++|. +.+++-+|++--.-+.++.-++|.-+.|
T Consensus 233 ~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r---~~~k~g~K~iA~~ylr~rk~~eK~~er~ 292 (439)
T KOG2911|consen 233 GSVADLIQARAKLAKQIEFLEQEIEKSKEKLR---QALKEGKKQIAITYLRARKLLEKDLERK 292 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHhhHHHH
Confidence 55777888888888888888888777777776 4455556666555556666666555443
No 449
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=31.36 E-value=3.7e+02 Score=23.69 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001953 812 LRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt 862 (992)
|..-.+..+++|+.....+.++.-.+--+ .+|..=+++|+-|-++.=+|.
T Consensus 17 L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal~ 66 (67)
T PF10506_consen 17 LSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLALV 66 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555555555544443322 566666777777777666553
No 450
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.35 E-value=1.5e+02 Score=28.76 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=16.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
|...++.|.++++.+..+.+.|+++...+..|++..++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 451
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=31.24 E-value=4.4e+02 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHh
Q 001953 832 RTSKQLKTVTAIAEDEAEKCKTA---------NEVIKSLTVQLKKMA 869 (992)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~a---------ke~iksLt~qlk~~~ 869 (992)
++++..+++...|.+|+++.+++ +++++.|-.+..+++
T Consensus 84 ~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la 130 (161)
T COG0711 84 EAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELA 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655443 445555555544443
No 452
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=31.20 E-value=2.4e+02 Score=30.61 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERT-SKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
++|+...+.+.++.++.+...-..+... .++++....++.-..+=++.|.|++..|..+|.
T Consensus 156 eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 156 DEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443 444555555555555555555555555555554
No 453
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.18 E-value=79 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=30.9
Q ss_pred ceEEEEEc--CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 41 QSFSLIYN--DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 41 ~~fs~i~~--~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
.+|-|+.. ...+-|-|+++||-+-|+..|..-+++
T Consensus 77 ~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 77 YGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 57889994 469999999999999999999988876
No 454
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.14 E-value=79 Score=29.71 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=61.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE-----AEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ake~iksLt~qlk~~~ 869 (992)
..+|+..-....+|-.-||..+.++..+-+....||++++-+..+.-..+.-. ..+..+.++-+|+.-.|..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 35788888888999999999999999999999999999998775543333211 2334567888888888888888
Q ss_pred hcCCC
Q 001953 870 EKSPE 874 (992)
Q Consensus 870 e~lp~ 874 (992)
.|+..
T Consensus 83 ~kv~e 87 (96)
T PF11365_consen 83 GKVME 87 (96)
T ss_pred hHHHH
Confidence 77643
No 455
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.12 E-value=3.1e+02 Score=30.84 Aligned_cols=139 Identities=22% Similarity=0.264 Sum_probs=72.0
Q ss_pred cCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEEEecCC-
Q 001953 304 GEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFTFGDGS- 379 (992)
Q Consensus 304 G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~wG~n~- 379 (992)
+.-|-++...||.||.-+... |.+|+-+... ..++.+..| .-|.+++..||..|..-.+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~---gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT---GAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCCceEEecCcc---ccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcce
Confidence 345778888999999877764 5555544322 123333332 24777788888887764321
Q ss_pred CCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCC-CCCCCCCCCCCCcc
Q 001953 380 FGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDG-DKGRLGHGDKEPRL 458 (992)
Q Consensus 380 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n-~~GQLG~g~~~~~~ 458 (992)
-+.++.........|.. .+.+-+.-.++++ +..|.||.-|.+ .+|+|--....-..
T Consensus 126 I~R~dpkt~evt~f~lp---------~~~a~~nlet~vf--------------D~~G~lWFt~q~G~yGrLdPa~~~i~v 182 (353)
T COG4257 126 IGRLDPKTLEVTRFPLP---------LEHADANLETAVF--------------DPWGNLWFTGQIGAYGRLDPARNVISV 182 (353)
T ss_pred eEEecCcccceEEeecc---------cccCCCcccceee--------------CCCccEEEeeccccceecCcccCceee
Confidence 11221111111111100 1112223345555 677999999873 34544322111111
Q ss_pred cceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEE
Q 001953 459 FPECVAPLIDENICQVACGHDLSVALTTSGHVYTM 493 (992)
Q Consensus 459 ~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~w 493 (992)
.|.. .-+.-.-++.|-||+||..
T Consensus 183 fpaP------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 183 FPAP------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred eccC------------CCCCCcceEECCCCcEEEE
Confidence 1111 1234566889999999986
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.94 E-value=4.2e+02 Score=35.61 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCCEEEEEEcCCEE--EEEEcCCcEEEEEcCCCCCCCC
Q 001953 520 ESFVEEVACGAYHV--AALTSTSKVYTWGKGANGQLGH 555 (992)
Q Consensus 520 ~~~V~~Ia~G~~Ht--~aLt~~G~Vy~WG~N~~GQLG~ 555 (992)
.+.|.+|+.+.... .++++.|.|-+|--+.+|.-|.
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccCCCccce
Confidence 56799999998665 5667889888887777766553
No 457
>PRK14154 heat shock protein GrpE; Provisional
Probab=30.73 E-value=2.6e+02 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=28.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
++.|++..+.|.....+++|..++++++.+.+..++.+.
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~ 99 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777888888888888877666555443
No 458
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=2.3e+02 Score=33.64 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=53.8
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
-.+.++...---+.++|.|.....++|..+-.....+++++=..+.+ ++--++-||-+++-+.|.||.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtde---llf~sakhddhvR~aykllt~ 456 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDE---LLFMSAKHDDHVRLAYKLLTR 456 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHhccCHHHHHHHHHHHH
Confidence 44555666666678899999988888888877777777777666664 566789999999999999997
No 459
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=30.68 E-value=66 Score=30.45 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE-AEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+..++.+.+++.++...+++|+...-.+--+.-...++-..++..-.+. -...+-+...|.+|.+||+++...
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888877655555544444434333322222 234566677788888865554443
No 460
>PLN02436 cellulose synthase A
Probab=30.57 E-value=26 Score=45.54 Aligned_cols=57 Identities=19% Similarity=0.570 Sum_probs=40.8
Q ss_pred ccccccCcCCCCCCCCCcccc---cccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 594 VSSVDHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 594 v~~~d~s~C~~C~~~Fsf~r~---rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+......+|+.|+..-+.+.. ---|.-|+..+|..|...- .......|+.|....++
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye---------r~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE---------RREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhh---------hhcCCccCcccCCchhh
Confidence 333445579999887765543 2458899999999998622 44667789999888774
No 461
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=30.54 E-value=2.1e+02 Score=27.64 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+.+.+..|.-..||+-|++++..|+..
T Consensus 3 e~l~kLkE~He~ev~glq~K~~~L~~e 29 (120)
T PF10482_consen 3 ELLNKLKEIHEKEVQGLQNKLLELKKE 29 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567788888999999999999888754
No 462
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=30.50 E-value=5.5e+02 Score=27.71 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=28.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
+|+||++----.-|+..++..+ .+|+.+-++++.....+.+.-+..+..|+|=...|-.
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A----------~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEA----------NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444443332 2344444444444444444444455566665555553
No 463
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=30.44 E-value=2.8e+02 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 829 ELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+|+...+|+..++..-++|.++-.++.+--..--+++++|.+.
T Consensus 25 ~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~ 67 (135)
T PRK10947 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 67 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555555555555444444333333344444433
No 464
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.32 E-value=58 Score=29.20 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=11.4
Q ss_pred ccchHhhhhhHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQ 815 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~ 815 (992)
++.|.+.|..|..|+++|++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAE 22 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345555565555555555443
No 465
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=30.31 E-value=2.2e+02 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 830 LERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
++...++|++...|-.|||. +.+++.|..+++
T Consensus 133 ~~~~~~~Le~iAglT~eEAk-----~~Ll~~le~e~~ 164 (201)
T PF12072_consen 133 IEEQQQELEEIAGLTAEEAK-----EILLEKLEEEAR 164 (201)
T ss_pred HHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHH
Confidence 33333444444444444433 344455544443
No 466
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.10 E-value=4.2e+02 Score=24.64 Aligned_cols=69 Identities=28% Similarity=0.311 Sum_probs=46.9
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLE---------AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
......+.+..|+.+|+.+++.|........ .+|+.+.++++.|+..++. .|-+.-.+-|+.|..+.+.
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~ 86 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKERE 86 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3344556778888888888888876644332 5788999999988877764 4555666666666654433
No 467
>PRK12705 hypothetical protein; Provisional
Probab=29.92 E-value=3.2e+02 Score=33.41 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=15.5
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (992)
.|.+..+.|.+.-++|..+.++|..+-+++..+|++
T Consensus 99 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ 134 (508)
T PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYR 134 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333334433
No 468
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=29.91 E-value=3.2e+02 Score=29.50 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=19.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL 826 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (992)
.|.+.+.-+.+.+|+.+|+.+++.|+++....
T Consensus 32 LD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 32 LDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666666666666555443
No 469
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=29.87 E-value=90 Score=23.08 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=21.9
Q ss_pred CCeEEEeecC-cEEEEEeCCCcEEEE
Q 001953 469 ENICQVACGH-DLSVALTTSGHVYTM 493 (992)
Q Consensus 469 ~~I~~Ia~G~-~htvaLT~dG~Vy~w 493 (992)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5689999999 889999999999963
No 470
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=29.86 E-value=2.8e+02 Score=31.48 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=7.7
Q ss_pred EEEEecCCCC
Q 001953 944 ITLSTLPGGG 953 (992)
Q Consensus 944 ~t~~~~~~g~ 953 (992)
|-|...|||+
T Consensus 330 l~ikL~pdGt 339 (387)
T COG3064 330 LRIKLAPDGT 339 (387)
T ss_pred EEEEEcCCcc
Confidence 5566889997
No 471
>PF15406 PH_6: Pleckstrin homology domain
Probab=29.75 E-value=99 Score=29.68 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=34.7
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
|.|.++.+|...-- .-|.+-...+..-+=|.+++|-+.||.-|++
T Consensus 67 inLadase~~~~g~--------------~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 67 INLADASEPEKDGS--------------NKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred EehhhccccccCCC--------------ceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 88888887765433 4577777666677789999999999999874
No 472
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.70 E-value=1.6e+02 Score=36.05 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
+.|.+..+.|.+.-+.|..+-++|.++-++++..+++..++|++...+-.|||. +++++.+..+++.=+.++
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak-----~~l~~~~~~~~~~~~~~~ 168 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAK-----EILLEEVEEEARHEAAKL 168 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHHHHHHHH
No 473
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.69 E-value=2.7e+02 Score=32.41 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTS 821 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~ 821 (992)
|.|....++.++++|..
T Consensus 4 l~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 4 LKEQREEIVAEIRSLLD 20 (378)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444443
No 474
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.63 E-value=3.8e+02 Score=31.58 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
|.-..+..+...|++..+.++.+..+.|.+|+++|+...
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~ 65 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT 65 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777788888888888888888887654
No 475
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.63 E-value=3.7e+02 Score=31.97 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=3.5
Q ss_pred EEecCCCC
Q 001953 946 LSTLPGGG 953 (992)
Q Consensus 946 ~~~~~~g~ 953 (992)
+++..||.
T Consensus 334 V~A~AdG~ 341 (420)
T COG4942 334 VKAIADGR 341 (420)
T ss_pred eeeecCce
Confidence 34444443
No 476
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.58 E-value=2.5e+02 Score=39.57 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 838 KTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 838 ~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
++....+.+|-+|.+.++....-|+.||.+|-..|-
T Consensus 995 ~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 995 RELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777778888887766553
No 477
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.47 E-value=4.4e+02 Score=29.05 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q 001953 839 TVTAIAEDEAEKC 851 (992)
Q Consensus 839 ~~~~~~~~~~~~~ 851 (992)
+.++.|++|+++-
T Consensus 90 ~il~~A~~ea~~~ 102 (250)
T PRK14474 90 HLLNEAREDVATA 102 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 478
>PRK12472 hypothetical protein; Provisional
Probab=29.41 E-value=1.7e+02 Score=35.15 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=35.1
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
...++.|+..+.-..|...|.+.+..|++.-..-+.||..+.|.|..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~ 250 (508)
T PRK12472 204 RAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250 (508)
T ss_pred HhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888888888887777766677777766666543
No 479
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=29.35 E-value=3.3e+02 Score=30.04 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 001953 861 LTVQLKKMA 869 (992)
Q Consensus 861 Lt~qlk~~~ 869 (992)
+..+|.++.
T Consensus 133 ~~~~l~~l~ 141 (256)
T PF14932_consen 133 LNNELNQLL 141 (256)
T ss_pred HHHHHHHHH
Confidence 333444443
No 480
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.30 E-value=1.1e+02 Score=33.19 Aligned_cols=46 Identities=35% Similarity=0.403 Sum_probs=33.4
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.+|...|+.|..|-+.||++.++|..+-.+...+++...+.+-+
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888887777776666666655554443
No 481
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.30 E-value=1.8e+02 Score=35.50 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=24.5
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLE 827 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (992)
..+..|++.-+.|..|+.+++++.+.+..+....+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888877766666554443
No 482
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.27 E-value=1.1e+02 Score=33.77 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=24.0
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAE 829 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (992)
...|-+|++|..|++|+.+++.++..|+++.+...+.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776666655554444
No 483
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.22 E-value=4.1e+02 Score=23.63 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
+.|.+|+..-+.|..+=-..+.-|.++.+++++.-....+-..|..
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555445555555555555555544444433333
No 484
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.13 E-value=2.7e+02 Score=31.27 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhhHHHHHHHHHHHHHHhhc
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK------------CKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ake~iksLt~qlk~~~e~ 871 (992)
+.+.+..+-...+.++...++.++.+...+..|..= ++.+++.++.+.++|..+..+
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~ 204 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQ 204 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555666666666666677766666666643 677777777777766665554
No 485
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=1.8e+02 Score=27.73 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=54.5
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
.++.-|-|.-..-.+||.+-++.|..|+.... .+-.|++-+..|+|..-|.-+=-.|.+.|++.+++.-+
T Consensus 13 ~vvkRlvKE~~~Yekev~~eeakvakl~~dg~-d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~l~ 82 (107)
T KOG3470|consen 13 GVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGA-DPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESILA 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHh
Confidence 34555666666777788887778877777666 66788888999999999999999999999888877644
No 486
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.84 E-value=3e+02 Score=34.55 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh----hHHHHHHHHH---
Q 001953 801 MNDSLNQEIIKLRAQV-------EELTSKSEHLEAELERTSKQLKTVT---AIAEDEAEKCKT----ANEVIKSLTV--- 863 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----ake~iksLt~--- 863 (992)
..+.|.+||.+||+.+ +.++..-..++.++++..+++.++- .+..-=+.+|.. -+|.+|-|..
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665555 4455555555555555555554432 122222333433 3566666655
Q ss_pred HHHHHhhcCCC
Q 001953 864 QLKKMAEKSPE 874 (992)
Q Consensus 864 qlk~~~e~lp~ 874 (992)
||.+|.-+--.
T Consensus 160 ~~q~~~R~a~~ 170 (632)
T PF14817_consen 160 QLQDIQRKAKV 170 (632)
T ss_pred HHHHHHhhccC
Confidence 56677655433
No 487
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=28.79 E-value=5.7e+02 Score=25.87 Aligned_cols=46 Identities=22% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHhhcC
Q 001953 827 EAELERTSKQLKTVTAIAEDEAEKCKTA-----NEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a-----ke~iksLt~qlk~~~e~l 872 (992)
+..+++..+..+.-|+-..+|....++. .+-.+-|.+|.-+|-.+|
T Consensus 95 ~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~~l 145 (145)
T PF14942_consen 95 DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEKKL 145 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3555666666666666665555554444 344566777777776554
No 488
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=28.78 E-value=2e+02 Score=36.09 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 844 AEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 844 ~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
+.+-.+...++++-|..|.+++-+++++|
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777888888888888766
No 489
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.69 E-value=2.5e+02 Score=24.19 Aligned_cols=41 Identities=22% Similarity=0.543 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRA-------QVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
+....+.+|+.+.++ +.++...+-.....+|+.+++++++.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=2.1e+02 Score=33.99 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=27.4
Q ss_pred ceeee-eCCeeEEEEEe------cCCC--CcceeEEE-eec-cccCHHHHHHHHHH
Q 001953 933 ERMVQ-AESGVYITLST------LPGG--GNEVKRVR-FSR-KHFTEQEAEKWWSE 977 (992)
Q Consensus 933 ~~~~~-~e~gv~~t~~~------~~~g--~~~~~r~~-f~~-~~f~~~~a~~ww~~ 977 (992)
||+++ .-|=-|+-+.. -..| ++.|=||. |++ |+|.=-.-+.-|++
T Consensus 258 e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~ 313 (455)
T KOG2509|consen 258 EWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEM 313 (455)
T ss_pred cccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHH
Confidence 89988 55777776641 1223 56566885 998 99943333335544
No 491
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.57 E-value=3.2e+02 Score=33.45 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL----------EAELERTSKQL-------KTVTAIAEDEAEKCKTANEV 857 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ake~ 857 (992)
.+.|+.-.+.-.+|+++|++++.+|+.+-+.| ..|.++.++.+ ...+..+.+.--+..+-.+-
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~ 375 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKE 375 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666777777777777777665544 23333333333 33333333333333333444
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 001953 858 IKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 858 iksLt~qlk~~~e~lp~~ 875 (992)
|+.+-.+|+.++.||--+
T Consensus 376 le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 376 LEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555777777776544
No 492
>PRK03918 chromosome segregation protein; Provisional
Probab=28.50 E-value=2.6e+02 Score=36.27 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=0.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhhHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA----------EKCKTANEVIKSLTVQL 865 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ake~iksLt~ql 865 (992)
+...+..+.+.+++..+.++++.+.++.+..+.+++..++++++.-....+.. .+.+..++-|+.+..+|
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el 268 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcC
Q 001953 866 KKMAEKS 872 (992)
Q Consensus 866 k~~~e~l 872 (992)
+++.+++
T Consensus 269 ~~l~~~l 275 (880)
T PRK03918 269 EELKKEI 275 (880)
T ss_pred HHHHHHH
No 493
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.46 E-value=1.9e+02 Score=27.30 Aligned_cols=44 Identities=11% Similarity=0.370 Sum_probs=0.0
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
+.....+.|+..+..+.+.++.+..+-+..+.+++.++++|++.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.46 E-value=1.2e+02 Score=33.75 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+|-...+.|.+||.+||.|++++..+-++...+-+..-..|.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK08655 prephenate dehydrogenase; Provisional
Probab=28.29 E-value=6.8e+02 Score=29.91 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
++-..|..+.+.+.++.++++.|++..+..+. +...+.++++-....+-..=...-...|.+|+.++..+.+-.-.+.
T Consensus 226 dI~~~N~~~~~~l~~~~~~l~~l~~~l~~~D~--~~l~~~~~~a~~~~~~~~~~~~~s~~~i~~~~~~~~~~~~~~~~~~ 303 (437)
T PRK08655 226 SIQMNNPQIPEIHETFIKECEELSELVKNGDR--EEFVERMKEAAKHFGDTERALGRSDKAIYALNQEFEKLLKSIGKEI 303 (437)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHhhccee
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCccccCCCCCCCCCCCccccccCCCccccccccceeeeeCCeeEEEEEecCCCCcce
Q 001953 877 SPSFTSGSTARHPSGVRTTYSTESHKTNTTAPASESNSNSAQQNLSHGTKVQTERKERMVQAESGVYITLSTLPGGGNEV 956 (992)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~gv~~t~~~~~~g~~~~ 956 (992)
.-. ..-+... ...-++...| -|+||.. ++|++
T Consensus 304 ~~~---------------------------------------~~~~~~~-----~~~~~~~~~~-~~~~~~~---~~~~~ 335 (437)
T PRK08655 304 GLK---------------------------------------HIYSGKI-----HVGILKKVTP-DYVTLKK---NNKEI 335 (437)
T ss_pred eeE---------------------------------------eecCCcE-----EEEEEEEecC-CeEEEee---CCcEE
Q ss_pred eEEEeeccccCHHHHHHHHHHccchhh
Q 001953 957 KRVRFSRKHFTEQEAEKWWSENGAKIC 983 (992)
Q Consensus 957 ~r~~f~~~~f~~~~a~~ww~~~~~~~~ 983 (992)
+.-.-.-+.+++.+-+.|=.+|.-.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~fp~~~ 362 (437)
T PRK08655 336 KLKISNIRLLSEKELREWKKKNLEKYV 362 (437)
T ss_pred EEEeeeeecCCHHHHHHHHHhcCCccc
No 496
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.11 E-value=5.4e+02 Score=24.66 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
..++...+.|.+.-.+|+..+.....-...-+.+..++.+.+++....-.+-.+..+..+.-|..|..+...+.++|
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK10698 phage shock protein PspA; Provisional
Probab=28.01 E-value=2.4e+02 Score=30.51 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTAN 855 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak 855 (992)
....+.+..|+.|++......+.....+++++.+|+++=..-..-.+|.++|+
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK02224 chromosome segregation protein; Provisional
Probab=27.96 E-value=2.7e+02 Score=36.26 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
+.+....+.+..++.++..+.+.+..+.+..+.++...++.+.++...+.+-..+.+.+.+-|+.|.++|.++.++|
T Consensus 324 ~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.86 E-value=4.6e+02 Score=23.78 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK--QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
+...-+.+.+.|..|+.-=..|....+.+..++++..+ .+.+.+.++. =..|....|.=|-+|-..++.|-+|+
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.84 E-value=1.4e+02 Score=28.87 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC------------------------------- 851 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 851 (992)
+.|.+..++|+.+++.|.+.-......+.+.++-++..-.+-.++....
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 001953 852 KTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 852 ~~ake~iksLt~qlk~~~e~l 872 (992)
+..+|.++.|...++.+.+.+
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~ 102 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAI 102 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHH
Done!