Query 001953
Match_columns 992
No_of_seqs 728 out of 2853
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 1.4E-67 4.9E-72 606.5 35.2 372 192-591 11-387 (389)
2 4d9s_A UVB-resistance protein 100.0 3.5E-65 1.2E-69 590.1 43.4 367 177-571 11-379 (406)
3 1a12_A RCC1, regulator of chro 100.0 5.4E-64 1.8E-68 580.9 42.0 367 191-592 17-410 (413)
4 3mvd_K Regulator of chromosome 100.0 2.6E-63 8.8E-68 576.5 45.3 375 182-592 24-419 (423)
5 3of7_A Regulator of chromosome 100.0 1.4E-63 4.7E-68 587.8 40.8 371 193-591 21-450 (473)
6 4d9s_A UVB-resistance protein 100.0 8.8E-61 3E-65 553.3 41.9 348 243-622 15-364 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 7.9E-57 2.7E-61 517.2 34.0 331 182-540 53-388 (389)
8 3mvd_K Regulator of chromosome 100.0 4E-55 1.4E-59 507.8 33.8 321 243-591 23-364 (423)
9 1a12_A RCC1, regulator of chro 100.0 1.7E-54 5.7E-59 501.5 37.4 331 182-542 59-412 (413)
10 3of7_A Regulator of chromosome 100.0 1.6E-54 5.5E-59 510.6 28.9 343 245-623 11-413 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 8.4E-49 2.9E-53 431.9 32.8 249 245-592 25-273 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3.3E-43 1.1E-47 387.3 31.0 252 183-543 25-276 (282)
13 1mai_A Phospholipase C delta-1 99.6 7.9E-16 2.7E-20 149.9 6.9 77 2-78 41-125 (131)
14 1x4u_A Zinc finger, FYVE domai 99.4 9.6E-14 3.3E-18 124.5 5.7 72 591-662 6-81 (84)
15 1z2q_A LM5-1; membrane protein 99.3 3.1E-13 1.1E-17 121.1 2.6 68 591-660 13-80 (84)
16 2yw8_A RUN and FYVE domain-con 99.3 5.5E-13 1.9E-17 119.0 4.0 72 586-661 6-77 (82)
17 1joc_A EEA1, early endosomal a 99.3 1.8E-12 6.1E-17 124.8 4.4 65 591-659 61-125 (125)
18 3t7l_A Zinc finger FYVE domain 99.3 1.7E-12 5.8E-17 117.8 3.3 69 590-662 11-79 (90)
19 1vfy_A Phosphatidylinositol-3- 99.2 1.9E-12 6.4E-17 112.9 2.4 66 590-660 5-70 (73)
20 1wfk_A Zinc finger, FYVE domai 99.1 1.4E-11 4.7E-16 111.2 3.6 62 597-661 7-68 (88)
21 3zyq_A Hepatocyte growth facto 99.1 2E-11 6.8E-16 129.6 2.8 68 590-662 158-225 (226)
22 1dvp_A HRS, hepatocyte growth 99.1 3.7E-11 1.3E-15 127.1 2.9 65 590-659 155-219 (220)
23 1y02_A CARP2, FYVE-ring finger 99.0 9.1E-11 3.1E-15 111.3 2.8 60 593-662 13-72 (120)
24 3ohm_B 1-phosphatidylinositol- 98.8 1.7E-09 5.8E-14 134.1 6.6 76 1-76 50-141 (885)
25 3qr0_A Phospholipase C-beta (P 98.8 1.6E-09 5.4E-14 133.7 5.4 76 1-76 51-144 (816)
26 3mpx_A FYVE, rhogef and PH dom 98.8 4.8E-10 1.6E-14 130.1 0.0 68 590-660 366-433 (434)
27 2zkm_X 1-phosphatidylinositol- 98.8 4.4E-09 1.5E-13 130.3 7.2 76 2-77 47-138 (799)
28 3a98_B Engulfment and cell mot 98.3 5.5E-07 1.9E-11 93.4 6.7 64 12-75 83-151 (203)
29 2lul_A Tyrosine-protein kinase 96.0 0.017 5.8E-07 57.7 8.9 74 2-79 48-126 (164)
30 1v5u_A SBF1, SET binding facto 94.8 0.051 1.7E-06 50.0 7.0 72 2-76 38-113 (117)
31 1k3i_A Galactose oxidase precu 94.7 0.79 2.7E-05 55.3 19.1 73 478-552 457-534 (656)
32 2zwa_A Leucine carboxyl methyl 94.6 2.4 8.2E-05 51.7 23.0 63 305-377 441-508 (695)
33 1fao_A Dual adaptor of phospho 94.5 0.07 2.4E-06 50.0 7.3 67 2-78 46-116 (126)
34 1p22_A F-BOX/WD-repeat protein 94.0 9.5 0.00033 42.5 33.2 240 245-549 175-414 (435)
35 2dn6_A KIAA0640 protein; PH do 93.5 0.14 4.8E-06 46.8 7.1 67 2-77 36-106 (115)
36 2cod_A Centaurin-delta 1; ARF 93.3 0.18 6.3E-06 46.3 7.6 60 2-75 37-100 (115)
37 1eaz_A Tandem PH domain contai 93.3 0.12 4.1E-06 48.1 6.4 70 2-78 42-115 (125)
38 4gbf_A Phikz131; 7-bladed beta 93.3 0.14 4.9E-06 53.7 7.3 68 245-325 310-377 (400)
39 2d9v_A Pleckstrin homology dom 93.2 0.23 7.8E-06 47.1 8.1 74 2-76 37-116 (130)
40 2dhk_A TBC1 domain family memb 93.0 0.15 5E-06 47.6 6.5 64 2-77 40-107 (119)
41 4gbf_A Phikz131; 7-bladed beta 92.6 0.29 9.9E-06 51.4 8.3 71 469-552 309-379 (400)
42 2vrw_B P95VAV, VAV1, proto-onc 92.5 0.046 1.6E-06 62.3 2.6 39 593-631 351-390 (406)
43 1btk_A Bruton'S tyrosine kinas 92.3 0.35 1.2E-05 48.3 8.5 37 41-77 99-135 (169)
44 1v89_A Hypothetical protein KI 92.2 0.51 1.7E-05 43.1 8.9 68 2-77 36-115 (118)
45 1pls_A Pleckstrin homology dom 91.9 0.31 1.1E-05 44.5 7.1 67 2-77 33-104 (113)
46 1x05_A Pleckstrin; PH domain, 91.8 0.55 1.9E-05 43.9 8.8 40 39-78 84-124 (129)
47 1wgq_A FYVE, rhogef and PH dom 91.5 0.42 1.4E-05 43.4 7.4 65 2-76 36-105 (109)
48 1u5d_A SKAP55, SRC kinase-asso 91.4 0.37 1.3E-05 43.2 6.8 67 2-75 35-106 (108)
49 1wg7_A Dedicator of cytokinesi 91.2 0.41 1.4E-05 46.2 7.4 64 2-76 57-126 (150)
50 2d9x_A Oxysterol binding prote 90.6 0.34 1.2E-05 45.0 6.0 39 39-77 68-107 (120)
51 3tfm_A Myosin X; split PH doma 89.8 0.44 1.5E-05 49.9 6.7 62 2-75 91-156 (228)
52 2zwa_A Leucine carboxyl methyl 89.6 12 0.00042 45.3 20.2 18 360-377 441-459 (695)
53 1fgy_A GRP1; PH domain, signal 89.3 0.85 2.9E-05 42.2 7.6 28 50-77 96-123 (127)
54 1zbd_B Rabphilin-3A; G protein 89.2 0.21 7.2E-06 48.1 3.3 56 597-658 53-109 (134)
55 2zet_C Melanophilin; complex, 88.5 0.2 6.8E-06 49.4 2.6 51 598-657 67-118 (153)
56 2ovr_B FBW7, F-BOX/WD repeat p 88.2 36 0.0012 37.7 36.6 225 245-548 161-390 (445)
57 2d9y_A Pleckstrin homology dom 88.0 0.98 3.3E-05 41.2 6.9 37 39-75 73-110 (117)
58 2rov_A RHO-associated protein 87.6 0.69 2.4E-05 43.3 5.6 61 12-74 49-115 (117)
59 2i5f_A Pleckstrin; PH domain, 87.2 1.3 4.3E-05 39.9 7.1 35 39-73 73-108 (109)
60 1x1f_A Signal-transducing adap 87.2 1.1 3.9E-05 43.7 7.2 65 2-75 46-114 (149)
61 1dyn_A Dynamin; signal transdu 87.0 1.2 4.1E-05 42.2 6.9 62 1-73 41-117 (125)
62 2yry_A Pleckstrin homology dom 87.0 1.3 4.4E-05 40.8 7.2 35 39-73 84-119 (122)
63 1upq_A PEPP1; PH domain, phosp 86.4 2 6.8E-05 39.5 8.2 37 39-75 73-110 (123)
64 1p22_A F-BOX/WD-repeat protein 86.4 44 0.0015 36.9 34.7 229 245-547 135-363 (435)
65 1u5f_A SRC-associated adaptor 85.7 1.1 3.7E-05 43.1 6.1 70 2-78 49-123 (148)
66 2rlo_A Centaurin-gamma 1; spli 85.6 0.83 2.8E-05 42.9 5.1 38 38-75 87-125 (128)
67 2cof_A Protein KIAA1914; PH do 85.6 1.2 4E-05 40.3 6.0 37 39-75 65-102 (107)
68 1qqg_A IRS-1, insulin receptor 85.3 0.85 2.9E-05 49.0 5.6 55 13-77 61-115 (264)
69 4aez_A CDC20, WD repeat-contai 85.1 48 0.0016 36.2 27.6 139 193-378 105-247 (401)
70 2dkp_A Pleckstrin homology dom 84.9 2.1 7E-05 39.7 7.5 36 39-74 83-119 (128)
71 3aj4_A Pleckstrin homology dom 84.8 0.85 2.9E-05 41.4 4.6 35 40-74 76-111 (112)
72 1jcd_A Major outer membrane li 84.5 2.2 7.6E-05 34.1 6.2 41 808-852 5-45 (52)
73 1v88_A Oxysterol binding prote 84.3 2.2 7.6E-05 40.5 7.4 63 2-75 35-125 (130)
74 3rcp_A Pleckstrin homology dom 84.2 0.62 2.1E-05 41.7 3.4 39 39-77 57-96 (103)
75 3sfz_A APAF-1, apoptotic pepti 84.0 74 0.0025 40.5 24.0 59 252-323 1014-1073(1249)
76 3u1c_A Tropomyosin alpha-1 cha 83.8 8.9 0.00031 34.9 10.9 71 796-866 26-96 (101)
77 2eqb_B RAB guanine nucleotide 83.4 11 0.00036 34.1 10.8 73 796-868 15-95 (97)
78 3no0_A DNA gyrase subunit A; D 83.0 52 0.0018 35.0 23.4 231 255-549 3-246 (276)
79 3a2a_A Voltage-gated hydrogen 82.6 3.3 0.00011 33.0 6.2 37 804-840 15-51 (58)
80 1u5e_A SRC-associated adaptor 82.0 2.3 7.9E-05 43.9 7.1 67 2-75 138-209 (211)
81 3no0_A DNA gyrase subunit A; D 81.5 60 0.002 34.6 20.8 207 253-502 35-251 (276)
82 3oja_B Anopheles plasmodium-re 81.3 6.1 0.00021 46.8 11.4 80 796-875 498-584 (597)
83 2rsg_A Collagen type IV alpha- 80.2 0.89 3E-05 40.0 2.7 33 39-71 59-91 (94)
84 1x1g_A Pleckstrin 2; PH domain 80.0 1.2 4E-05 41.5 3.7 38 39-76 88-126 (129)
85 2da0_A 130-kDa phosphatidylino 79.8 1.3 4.4E-05 40.6 3.8 38 40-77 67-104 (114)
86 3cxb_B Pleckstrin homology dom 79.2 3.1 0.00011 38.1 6.2 40 38-77 64-104 (112)
87 2dq0_A Seryl-tRNA synthetase; 79.2 5.6 0.00019 46.0 9.7 70 806-875 30-109 (455)
88 1k3i_A Galactose oxidase precu 79.1 22 0.00076 42.5 15.5 17 254-270 289-305 (656)
89 3ol1_A Vimentin; structural ge 79.0 16 0.00053 34.3 11.0 77 795-871 29-116 (119)
90 4aez_A CDC20, WD repeat-contai 78.6 80 0.0027 34.3 29.1 107 246-378 96-204 (401)
91 2uvk_A YJHT; unknown function, 78.5 34 0.0012 36.9 15.6 17 360-377 110-126 (357)
92 3qne_A Seryl-tRNA synthetase, 78.0 6.9 0.00024 45.4 9.9 66 809-874 42-110 (485)
93 1wle_A Seryl-tRNA synthetase; 77.8 8.9 0.00031 44.8 10.9 71 805-875 75-156 (501)
94 2ovr_B FBW7, F-BOX/WD repeat p 77.5 90 0.0031 34.3 33.2 226 246-548 122-347 (445)
95 3na7_A HP0958; flagellar bioge 77.5 9.6 0.00033 40.4 10.3 79 795-876 99-177 (256)
96 3vl1_A 26S proteasome regulato 77.1 85 0.0029 33.9 28.3 71 469-549 291-365 (420)
97 2w2x_D 1-phosphatidylinositol- 75.6 2.4 8.1E-05 39.7 4.4 36 40-75 82-120 (124)
98 1v5p_A Pleckstrin homology dom 75.5 4.7 0.00016 38.0 6.5 55 13-74 66-120 (126)
99 1wjm_A Beta-spectrin III; PH d 75.0 3.2 0.00011 38.3 5.1 41 38-78 80-121 (123)
100 2efr_A General control protein 75.0 19 0.00064 35.4 10.6 72 799-870 69-140 (155)
101 1wle_A Seryl-tRNA synthetase; 74.9 6.7 0.00023 45.8 8.8 79 795-873 54-147 (501)
102 2ocy_A RAB guanine nucleotide 74.9 18 0.0006 35.5 10.3 66 804-869 55-142 (154)
103 2efr_A General control protein 74.8 18 0.0006 35.6 10.4 64 805-868 26-89 (155)
104 3lju_X ARF-GAP with dual PH do 74.8 4.3 0.00015 45.8 7.1 37 40-76 338-374 (386)
105 1gxr_A ESG1, transducin-like e 74.5 82 0.0028 32.4 28.6 238 249-548 7-254 (337)
106 2puy_A PHD finger protein 21A; 74.2 3.6 0.00012 33.6 4.6 55 598-662 4-58 (60)
107 2v71_A Nuclear distribution pr 74.0 19 0.00065 36.4 10.6 61 796-856 38-105 (189)
108 1ses_A Seryl-tRNA synthetase; 73.9 6.2 0.00021 45.1 8.1 39 837-875 66-104 (421)
109 3u59_A Tropomyosin beta chain; 73.9 27 0.00092 31.6 10.8 66 801-866 31-96 (101)
110 2coc_A FYVE, rhogef and PH dom 73.8 8.5 0.00029 35.5 7.6 36 39-74 71-106 (112)
111 2dq0_A Seryl-tRNA synthetase; 73.6 5.8 0.0002 45.9 7.8 7 954-960 294-300 (455)
112 1c1g_A Tropomyosin; contractIl 73.6 15 0.00052 37.7 10.5 35 796-830 2-36 (284)
113 3vmx_A Voltage-gated hydrogen 73.4 8.2 0.00028 30.1 5.9 35 805-839 9-43 (48)
114 2jee_A YIIU; FTSZ, septum, coi 71.4 9.3 0.00032 33.3 6.6 36 796-831 30-65 (81)
115 3mq7_A Bone marrow stromal ant 71.3 8.5 0.00029 35.5 6.6 13 828-840 78-90 (121)
116 1unq_A RAC-alpha serine/threon 71.2 3.5 0.00012 38.1 4.4 40 38-77 70-113 (125)
117 1q7f_A NHL, brain tumor CG1071 70.5 98 0.0034 31.6 23.8 17 480-496 210-226 (286)
118 3hnw_A Uncharacterized protein 70.1 29 0.001 33.3 10.6 64 805-868 66-129 (138)
119 3tul_A Cell invasion protein S 70.1 9.7 0.00033 36.5 6.9 69 804-872 24-92 (158)
120 3fx7_A Putative uncharacterize 69.9 8.9 0.0003 34.4 6.3 71 795-871 15-85 (94)
121 3htk_A Structural maintenance 69.7 21 0.00073 28.9 8.3 54 806-866 4-57 (60)
122 3mkq_A Coatomer beta'-subunit; 69.3 1.9E+02 0.0065 34.4 26.4 232 245-549 15-259 (814)
123 2dq3_A Seryl-tRNA synthetase; 69.3 6.4 0.00022 45.1 6.8 80 796-875 16-108 (425)
124 2v66_B Nuclear distribution pr 69.2 44 0.0015 30.9 11.0 64 804-867 39-102 (111)
125 3oja_B Anopheles plasmodium-re 69.1 15 0.00051 43.4 10.3 71 795-865 511-581 (597)
126 3zwl_B Eukaryotic translation 69.0 1.1E+02 0.0039 31.7 30.7 161 245-443 76-247 (369)
127 3lss_A Seryl-tRNA synthetase; 68.8 14 0.00049 42.8 9.6 35 954-988 311-355 (484)
128 3ii7_A Kelch-like protein 7; p 68.3 1E+02 0.0035 32.2 15.9 17 306-323 48-64 (306)
129 1kd8_B GABH BLL, GCN4 acid bas 68.1 8.7 0.0003 27.9 4.6 33 808-840 2-34 (36)
130 4emc_A Monopolin complex subun 67.6 19 0.00067 36.1 8.9 66 802-867 15-83 (190)
131 2dfs_A Myosin-5A; myosin-V, in 67.6 16 0.00053 46.9 10.4 8 2-9 12-19 (1080)
132 1btn_A Beta-spectrin; signal t 67.2 5.7 0.00019 35.2 4.7 33 39-71 72-105 (106)
133 2r09_A Cytohesin-3; autoinhibi 66.9 9.2 0.00032 42.4 7.4 64 2-76 241-330 (347)
134 3qne_A Seryl-tRNA synthetase, 66.7 11 0.00036 43.9 7.9 80 795-874 19-103 (485)
135 2yy0_A C-MYC-binding protein; 66.2 8.5 0.00029 30.9 4.9 26 795-820 21-46 (53)
136 3ulb_A Target of rapamycin com 66.1 12 0.00041 35.0 6.6 60 4-75 50-115 (121)
137 2csz_A Synaptotagmin-like prot 66.0 3.4 0.00012 35.6 2.7 50 598-657 24-74 (76)
138 3ljm_A Coil Ser L9C; de novo d 65.6 8.9 0.00031 26.0 4.0 23 817-839 4-26 (31)
139 2j59_M RHO-GTPase activating p 65.6 4.9 0.00017 39.3 4.3 38 38-75 75-112 (168)
140 3lss_A Seryl-tRNA synthetase; 65.2 13 0.00043 43.3 8.2 45 795-839 23-69 (484)
141 3uc1_A DNA gyrase subunit A; D 65.2 1.6E+02 0.0055 32.0 24.2 225 249-503 49-285 (327)
142 1gxr_A ESG1, transducin-like e 65.1 1.3E+02 0.0044 30.9 35.9 272 192-548 12-295 (337)
143 2vpj_A Kelch-like protein 12; 65.0 1.3E+02 0.0045 31.2 15.9 17 360-377 104-120 (301)
144 1wev_A Riken cDNA 1110020M19; 64.9 6.3 0.00022 34.9 4.4 62 599-662 16-78 (88)
145 1ci6_A Transcription factor AT 63.3 19 0.00064 29.8 6.7 41 799-839 22-62 (63)
146 3ryc_E Stathmin-4; alpha-tubul 63.2 72 0.0025 30.7 11.5 42 795-838 45-86 (143)
147 2xyi_A Probable histone-bindin 63.0 1.8E+02 0.0062 31.9 25.4 261 245-548 130-409 (430)
148 1lwu_C Fibrinogen gamma chain; 62.9 16 0.00056 40.1 8.2 57 796-852 1-57 (323)
149 2b9c_A Striated-muscle alpha t 62.6 52 0.0018 31.9 10.8 65 807-871 52-116 (147)
150 4a11_B DNA excision repair pro 62.6 1.6E+02 0.0055 31.1 30.5 249 244-549 100-365 (408)
151 2akf_A Coronin-1A; coiled coil 62.5 15 0.00052 25.4 4.8 28 804-831 3-30 (32)
152 3no2_A Uncharacterized protein 62.1 1.5E+02 0.0053 30.8 29.1 166 349-554 86-266 (276)
153 3swk_A Vimentin; cytoskeleton, 62.0 23 0.0008 31.1 7.5 66 796-861 10-82 (86)
154 2eqb_B RAB guanine nucleotide 61.8 19 0.00066 32.4 6.9 31 808-838 6-36 (97)
155 2fjl_A 1-phosphatidylinositol- 61.6 9.4 0.00032 37.3 5.3 36 39-74 110-148 (150)
156 3ol1_A Vimentin; structural ge 61.3 64 0.0022 30.1 10.8 54 804-857 17-70 (119)
157 1i84_S Smooth muscle myosin he 61.2 19 0.00065 46.6 9.7 38 796-833 860-897 (1184)
158 2yy0_A C-MYC-binding protein; 61.2 7.2 0.00025 31.3 3.6 31 807-837 19-49 (53)
159 4asc_A Kelch repeat and BTB do 60.9 1.6E+02 0.0056 30.7 16.3 16 361-377 91-106 (315)
160 1sq9_A Antiviral protein SKI8; 60.7 1.7E+02 0.006 30.9 26.6 122 244-379 17-157 (397)
161 2aq5_A Coronin-1A; WD40 repeat 60.6 1.8E+02 0.0063 31.2 26.6 113 248-377 39-161 (402)
162 2uvk_A YJHT; unknown function, 60.5 89 0.003 33.5 13.8 18 305-323 110-127 (357)
163 1kd8_A GABH AIV, GCN4 acid bas 60.4 10 0.00036 27.5 3.9 32 808-839 2-33 (36)
164 2a20_A Regulating synaptic mem 60.2 6.3 0.00022 32.1 3.1 54 597-656 7-60 (62)
165 3mmy_A MRNA export factor; mRN 59.5 1.7E+02 0.0057 30.3 23.6 194 295-549 39-247 (368)
166 2fxo_A Myosin heavy chain, car 59.2 51 0.0018 31.1 10.0 6 864-869 84-89 (129)
167 1yfq_A Cell cycle arrest prote 59.1 1.7E+02 0.0057 30.2 26.6 162 245-445 58-225 (342)
168 3k26_A Polycomb protein EED; W 58.9 1.7E+02 0.0059 30.3 27.8 205 244-497 19-260 (366)
169 1i84_S Smooth muscle myosin he 58.8 19 0.00066 46.5 9.2 35 805-839 862-896 (1184)
170 3csx_A Putative uncharacterize 58.7 12 0.00041 32.6 4.8 60 811-870 19-78 (81)
171 3nmd_A CGMP dependent protein 58.2 22 0.00075 30.3 6.2 45 795-839 21-65 (72)
172 4h22_A Leucine-rich repeat fli 58.2 83 0.0028 28.6 10.3 64 801-871 17-80 (103)
173 1ses_A Seryl-tRNA synthetase; 58.1 9.8 0.00034 43.5 5.6 78 796-873 16-95 (421)
174 3i00_A HIP-I, huntingtin-inter 57.7 39 0.0013 31.7 8.6 59 793-855 15-77 (120)
175 2vpj_A Kelch-like protein 12; 56.8 1.8E+02 0.0063 30.0 15.7 17 306-323 105-121 (301)
176 3trt_A Vimentin; cytoskeleton, 56.7 66 0.0023 27.3 9.4 60 806-867 8-67 (77)
177 3f6n_A Virion-associated prote 56.4 22 0.00074 33.0 6.3 73 797-869 6-78 (129)
178 3swk_A Vimentin; cytoskeleton, 56.1 59 0.002 28.5 9.1 54 808-861 1-54 (86)
179 4gkw_A Spindle assembly abnorm 55.8 54 0.0019 30.8 9.0 30 795-824 48-77 (167)
180 2zqm_A Prefoldin beta subunit 55.4 21 0.00073 32.7 6.5 40 802-841 8-47 (117)
181 2p0d_A RHO GTPase-activating p 54.3 11 0.00036 35.4 4.3 37 39-75 88-125 (129)
182 3s4r_A Vimentin; alpha-helix, 54.2 72 0.0025 28.4 9.4 67 797-872 27-93 (93)
183 3ky9_A Proto-oncogene VAV; cal 53.8 5.3 0.00018 47.6 2.5 46 581-631 516-562 (587)
184 3ra3_B P2F; coiled coil domain 53.7 11 0.00038 25.0 2.8 25 796-820 3-27 (28)
185 3ii7_A Kelch-like protein 7; p 53.1 2.1E+02 0.0073 29.6 18.7 17 254-271 48-64 (306)
186 2ecm_A Ring finger and CHY zin 53.1 4 0.00014 31.9 0.9 50 598-657 4-53 (55)
187 2y7b_A Actin-binding protein a 52.8 13 0.00045 34.4 4.7 37 40-76 74-130 (134)
188 3odt_A Protein DOA1; ubiquitin 52.8 2E+02 0.0067 29.1 32.1 227 246-548 62-295 (313)
189 3hnw_A Uncharacterized protein 52.5 45 0.0015 32.0 8.3 39 800-838 75-113 (138)
190 1ic2_A Tropomyosin alpha chain 52.4 44 0.0015 28.9 7.6 31 811-841 38-68 (81)
191 1suu_A DNA gyrase subunit A; t 51.9 2.5E+02 0.0086 30.1 25.8 219 249-500 54-286 (312)
192 2p22_A Suppressor protein STP2 51.7 83 0.0028 31.3 10.3 73 795-867 44-140 (174)
193 3bas_A Myosin heavy chain, str 51.3 99 0.0034 27.2 9.8 13 860-872 74-86 (89)
194 4asc_A Kelch repeat and BTB do 51.3 2.3E+02 0.008 29.5 16.7 17 360-377 140-156 (315)
195 1wt6_A Myotonin-protein kinase 51.2 37 0.0013 29.4 6.6 25 815-839 46-70 (81)
196 3qh9_A Liprin-beta-2; coiled-c 50.8 1.2E+02 0.0042 26.2 9.7 43 796-838 15-57 (81)
197 2js5_A Uncharacterized protein 49.9 26 0.00089 29.7 5.3 61 808-868 4-64 (71)
198 4fla_A Regulation of nuclear P 49.9 1.2E+02 0.0043 29.4 11.1 75 796-874 75-149 (152)
199 3o0z_A RHO-associated protein 49.8 1.1E+02 0.0039 30.1 10.8 65 799-863 33-97 (168)
200 1mm2_A MI2-beta; PHD, zinc fin 49.8 15 0.00051 30.1 3.9 50 598-657 8-57 (61)
201 2yql_A PHD finger protein 21A; 49.4 16 0.00054 29.3 3.9 48 598-655 8-55 (56)
202 1xwh_A Autoimmune regulator; P 49.1 19 0.00064 29.9 4.4 50 597-656 6-55 (66)
203 2dfs_A Myosin-5A; myosin-V, in 48.8 59 0.002 41.6 11.0 8 652-659 727-734 (1080)
204 2e7s_A RAB guanine nucleotide 48.6 15 0.00052 35.1 4.2 65 805-869 44-116 (135)
205 3a7p_A Autophagy protein 16; c 48.2 1.2E+02 0.0042 29.4 10.5 77 797-873 65-145 (152)
206 2v4h_A NF-kappa-B essential mo 48.0 50 0.0017 30.3 7.3 35 794-828 25-59 (110)
207 3uc1_A DNA gyrase subunit A; D 48.0 3E+02 0.01 29.8 23.4 216 301-548 49-278 (327)
208 3odt_A Protein DOA1; ubiquitin 47.9 2.3E+02 0.0079 28.5 30.3 186 244-496 105-295 (313)
209 1dro_A Beta-spectrin; cytoskel 47.7 15 0.00051 33.7 4.1 37 39-75 83-120 (122)
210 3tca_A Amyloid beta A4 precurs 47.5 17 0.00059 38.5 5.1 35 39-73 235-275 (291)
211 2gd5_A Charged multivesicular 47.3 95 0.0033 30.8 10.3 75 796-871 10-86 (179)
212 3vkg_A Dynein heavy chain, cyt 47.2 55 0.0019 46.5 11.0 41 805-845 1922-1965(3245)
213 1fxk_A Prefoldin; archaeal pro 46.9 42 0.0014 30.1 6.9 67 805-871 6-94 (107)
214 3iv1_A Tumor susceptibility ge 46.6 1.4E+02 0.0049 25.7 9.7 63 802-871 13-75 (78)
215 3na7_A HP0958; flagellar bioge 45.9 92 0.0031 32.7 10.4 55 795-849 92-146 (256)
216 4etp_A Kinesin-like protein KA 45.9 35 0.0012 38.7 7.5 56 809-871 5-60 (403)
217 1t2k_D Cyclic-AMP-dependent tr 45.9 15 0.00053 30.0 3.4 25 806-830 28-52 (61)
218 2e6r_A Jumonji/ARID domain-con 45.0 20 0.0007 31.8 4.3 53 598-657 15-67 (92)
219 4etp_A Kinesin-like protein KA 44.6 41 0.0014 38.1 7.9 41 804-844 7-47 (403)
220 3u06_A Protein claret segregat 44.1 45 0.0016 37.8 8.1 57 801-871 4-60 (412)
221 2yt5_A Metal-response element- 44.0 23 0.00077 29.2 4.2 57 598-657 5-62 (66)
222 2ocy_A RAB guanine nucleotide 44.0 89 0.0031 30.5 8.9 42 828-869 51-92 (154)
223 2xzr_A Immunoglobulin-binding 43.7 48 0.0017 29.5 6.2 36 803-838 72-107 (114)
224 3mq7_A Bone marrow stromal ant 43.3 1.1E+02 0.0037 28.3 8.7 30 809-838 73-102 (121)
225 1wp5_A Topoisomerase IV; broke 43.3 3.5E+02 0.012 29.2 24.3 127 249-384 46-179 (323)
226 1rwi_B Serine/threonine-protei 43.2 2.6E+02 0.0089 27.8 18.7 18 479-496 194-211 (270)
227 2adz_A Alpha-1-syntrophin; pro 43.0 24 0.00083 35.3 4.9 41 34-74 135-177 (178)
228 3m9b_A Proteasome-associated A 43.0 18 0.00061 38.1 4.1 65 804-869 28-95 (251)
229 3u0c_A Invasin IPAB, 62 kDa an 42.9 1.4E+02 0.0049 29.2 10.0 65 808-872 76-140 (201)
230 1jcd_A Major outer membrane li 42.6 56 0.0019 26.1 5.9 37 804-840 8-44 (52)
231 2l3l_A Tubulin-specific chaper 42.5 35 0.0012 31.5 5.6 73 800-874 35-109 (111)
232 2k16_A Transcription initiatio 42.2 12 0.0004 31.9 2.2 55 599-660 18-72 (75)
233 3o36_A Transcription intermedi 42.0 19 0.00065 36.1 4.1 50 598-657 3-52 (184)
234 3vkg_A Dynein heavy chain, cyt 41.9 74 0.0025 45.3 11.0 66 798-863 2012-2084(3245)
235 3u1c_A Tropomyosin alpha-1 cha 41.8 1.9E+02 0.0067 25.9 11.4 42 798-839 14-55 (101)
236 2wt7_B Transcription factor MA 41.6 55 0.0019 29.1 6.4 33 804-836 52-84 (90)
237 2wt7_A Proto-oncogene protein 41.5 68 0.0023 26.3 6.7 18 805-822 28-45 (63)
238 2v71_A Nuclear distribution pr 41.2 1.9E+02 0.0066 29.1 11.2 64 804-867 92-155 (189)
239 1wi1_A Calcium-dependent activ 41.0 28 0.00094 33.0 4.7 37 39-75 75-111 (126)
240 3o0z_A RHO-associated protein 41.0 2.2E+02 0.0077 28.0 11.3 34 795-828 57-90 (168)
241 3u59_A Tropomyosin beta chain; 40.8 2E+02 0.0068 25.7 11.4 43 798-840 14-56 (101)
242 1go4_E MAD1 (mitotic arrest de 40.6 1.1E+02 0.0037 27.7 8.3 32 794-825 13-44 (100)
243 1m1j_B Fibrinogen beta chain; 40.0 1.2E+02 0.0042 34.8 10.8 26 795-820 88-113 (464)
244 2fxo_A Myosin heavy chain, car 39.8 2.2E+02 0.0076 26.6 11.0 22 796-817 37-58 (129)
245 1m1j_B Fibrinogen beta chain; 39.7 1.1E+02 0.0039 35.0 10.4 27 815-841 136-162 (464)
246 4e61_A Protein BIM1; EB1-like 39.7 1.7E+02 0.0059 26.7 9.5 41 799-839 10-50 (106)
247 4emc_A Monopolin complex subun 39.5 1.5E+02 0.005 29.9 9.8 64 793-863 20-83 (190)
248 1t2k_D Cyclic-AMP-dependent tr 39.4 69 0.0023 26.1 6.3 20 809-828 24-43 (61)
249 4dk0_A Putative MACA; alpha-ha 39.0 82 0.0028 34.4 9.2 74 799-872 69-152 (369)
250 2wq1_A General control protein 38.6 62 0.0021 23.1 4.9 29 809-837 2-30 (33)
251 3ra3_A P1C; coiled coil domain 38.5 31 0.0011 22.9 3.2 27 795-821 2-28 (28)
252 2ysl_A Tripartite motif-contai 38.4 7.4 0.00025 32.3 0.3 52 598-660 19-70 (73)
253 4a6h_A Phosphatidylinositol 4, 38.4 23 0.0008 32.9 3.8 36 39-74 76-118 (120)
254 3axj_A GM27569P, translin; tra 38.1 65 0.0022 33.9 7.6 28 849-876 71-98 (249)
255 2hy6_A General control protein 38.0 37 0.0013 24.4 3.7 30 808-837 2-31 (34)
256 3a8p_A T-lymphoma invasion and 37.9 33 0.0011 36.5 5.4 38 39-76 88-126 (263)
257 3lju_X ARF-GAP with dual PH do 37.8 16 0.00056 41.1 3.1 62 2-73 176-245 (386)
258 3ghg_A Fibrinogen alpha chain; 37.7 1.6E+02 0.0054 34.2 10.9 70 795-871 112-191 (562)
259 3a7p_A Autophagy protein 16; c 37.6 2.3E+02 0.0077 27.5 10.5 35 803-837 64-98 (152)
260 1p9i_A Cortexillin I/GCN4 hybr 37.5 48 0.0016 22.5 4.0 25 798-822 4-28 (31)
261 3frt_A Charged multivesicular 37.4 1.3E+02 0.0043 31.1 9.5 78 795-872 9-87 (218)
262 3c3f_A Alpha/beta peptide with 37.4 38 0.0013 24.3 3.7 29 809-837 3-31 (34)
263 3u5n_A E3 ubiquitin-protein li 37.4 21 0.00071 36.5 3.6 50 598-657 6-55 (207)
264 2aq5_A Coronin-1A; WD40 repeat 37.3 4.1E+02 0.014 28.3 26.4 157 301-496 40-206 (402)
265 3c3g_A Alpha/beta peptide with 37.3 51 0.0018 23.6 4.3 29 809-837 2-30 (33)
266 1fp0_A KAP-1 corepressor; PHD 37.1 22 0.00075 31.5 3.1 50 597-656 23-72 (88)
267 3oja_A Leucine-rich immune mol 36.8 1.1E+02 0.0037 35.0 10.1 35 831-865 452-486 (487)
268 1hjb_A Ccaat/enhancer binding 36.7 71 0.0024 28.2 6.3 10 865-874 69-78 (87)
269 1joc_A EEA1, early endosomal a 36.7 1.1E+02 0.0037 28.7 8.1 32 800-831 11-42 (125)
270 1ez3_A Syntaxin-1A; three heli 36.6 2.5E+02 0.0085 25.6 10.8 15 855-869 94-108 (127)
271 3cve_A Homer protein homolog 1 36.6 1.8E+02 0.0062 24.7 8.5 17 802-818 16-32 (72)
272 2ecv_A Tripartite motif-contai 36.2 9.3 0.00032 32.5 0.6 55 598-660 18-72 (85)
273 1l8d_A DNA double-strand break 35.9 1.7E+02 0.0058 26.3 9.3 35 803-837 6-40 (112)
274 3iv1_A Tumor susceptibility ge 35.7 83 0.0029 27.2 6.4 47 795-841 27-73 (78)
275 1m1j_C Fibrinogen gamma chain; 35.6 1.1E+02 0.0039 34.5 9.5 20 805-824 46-65 (409)
276 3q8t_A Beclin-1; autophagy, AT 35.3 2.4E+02 0.0083 25.1 10.5 38 799-836 17-54 (96)
277 4ani_A Protein GRPE; chaperone 35.1 1.3E+02 0.0044 31.0 9.0 37 803-839 62-98 (213)
278 3no2_A Uncharacterized protein 35.0 4E+02 0.014 27.5 22.4 31 292-322 84-116 (276)
279 1pgu_A Actin interacting prote 35.0 5.3E+02 0.018 28.9 32.4 55 252-322 308-364 (615)
280 1iym_A EL5; ring-H2 finger, ub 35.0 22 0.00075 27.5 2.6 49 598-656 4-52 (55)
281 1weo_A Cellulose synthase, cat 34.4 7.1 0.00024 34.5 -0.4 56 595-659 12-70 (93)
282 2bni_A General control protein 34.4 39 0.0013 24.4 3.4 29 809-837 3-31 (34)
283 3jsv_C NF-kappa-B essential mo 34.4 1.1E+02 0.0036 27.4 7.0 24 843-866 27-50 (94)
284 2ct2_A Tripartite motif protei 34.3 9.3 0.00032 32.8 0.3 55 598-659 14-68 (88)
285 2q13_A DCC-interacting protein 34.0 31 0.0011 38.5 4.6 38 40-77 339-378 (385)
286 2xn4_A Kelch-like protein 2; s 34.0 4E+02 0.014 27.3 15.3 16 254-270 54-69 (302)
287 3i00_A HIP-I, huntingtin-inter 33.9 2.9E+02 0.01 25.7 10.4 71 795-865 10-80 (120)
288 2ecn_A Ring finger protein 141 33.7 17 0.00059 29.8 1.9 49 598-661 14-62 (70)
289 1jnm_A Proto-oncogene C-JUN; B 33.6 41 0.0014 27.6 4.1 7 809-815 31-37 (62)
290 3cve_A Homer protein homolog 1 33.6 97 0.0033 26.4 6.4 18 853-870 43-60 (72)
291 3he4_B Synzip5; heterodimeric 33.6 1.4E+02 0.0049 21.9 6.3 30 820-849 12-41 (46)
292 3lrq_A E3 ubiquitin-protein li 33.3 8 0.00027 34.7 -0.3 50 598-659 21-70 (100)
293 2lri_C Autoimmune regulator; Z 32.9 22 0.00076 29.6 2.4 48 598-655 11-58 (66)
294 2xdj_A Uncharacterized protein 32.9 92 0.0031 27.2 6.4 30 811-840 31-60 (83)
295 3viq_B Mating-type switching p 32.7 33 0.0011 30.2 3.4 22 804-825 5-26 (85)
296 1suu_A DNA gyrase subunit A; t 32.7 4.8E+02 0.017 27.8 24.6 261 253-549 8-283 (312)
297 1zvt_A Topoisomerase IV subuni 32.6 2.4E+02 0.0083 29.4 11.1 125 249-385 40-169 (256)
298 2qup_A BH1478 protein; structu 32.6 1.7E+02 0.0058 28.1 9.0 81 793-873 26-120 (145)
299 1zi0_A DNA gyrase subunit A; b 32.5 4.8E+02 0.017 27.7 26.7 224 249-502 49-282 (307)
300 2woz_A Kelch repeat and BTB do 32.4 3.9E+02 0.013 27.7 13.1 16 361-377 151-166 (318)
301 3vbb_A Seryl-tRNA synthetase, 32.3 1.3E+02 0.0043 35.3 9.4 80 795-874 20-137 (522)
302 3v7d_B Cell division control p 31.9 5.2E+02 0.018 28.0 32.8 237 246-549 125-381 (464)
303 1z87_A Alpha-1-syntrophin; pro 31.9 41 0.0014 35.8 4.9 41 34-74 220-262 (263)
304 4aj5_K Spindle and kinetochore 31.9 80 0.0027 29.5 6.1 50 804-853 47-96 (123)
305 2ect_A Ring finger protein 126 31.8 27 0.00092 29.2 2.8 53 598-661 14-66 (78)
306 3m48_A General control protein 31.5 53 0.0018 23.5 3.6 23 811-833 4-26 (33)
307 2b9c_A Striated-muscle alpha t 31.4 3.5E+02 0.012 26.0 11.0 65 803-867 55-119 (147)
308 3mmy_A MRNA export factor; mRN 31.2 4.4E+02 0.015 26.9 26.3 109 243-377 39-158 (368)
309 1sq9_A Antiviral protein SKI8; 31.2 4.8E+02 0.016 27.3 29.5 64 254-323 82-156 (397)
310 2ecw_A Tripartite motif-contai 31.2 11 0.00039 31.9 0.3 55 598-660 18-72 (85)
311 1ci6_A Transcription factor AT 31.2 1.4E+02 0.0048 24.5 7.0 34 806-839 22-55 (63)
312 2gd5_A Charged multivesicular 30.9 93 0.0032 30.9 7.1 38 804-841 11-48 (179)
313 2woz_A Kelch repeat and BTB do 30.9 2.1E+02 0.0071 30.0 10.5 18 478-496 150-167 (318)
314 3csx_A Putative uncharacterize 30.8 89 0.003 27.2 5.8 26 804-829 19-44 (81)
315 3zx6_A HAMP, methyl-accepting 30.8 2.3E+02 0.008 30.8 11.0 7 855-861 128-134 (341)
316 3fpp_A Macrolide-specific effl 30.7 1.1E+02 0.0038 33.0 8.3 34 800-833 69-102 (341)
317 3cvf_A Homer-3, homer protein 30.6 1.1E+02 0.0038 26.5 6.4 16 802-817 22-37 (79)
318 3viq_A SWI5-dependent recombin 30.5 1.6E+02 0.0056 27.5 8.1 26 798-823 5-30 (122)
319 1go4_E MAD1 (mitotic arrest de 30.4 2.7E+02 0.0093 25.1 9.2 33 807-839 12-44 (100)
320 1v61_A RAC/CDC42 guanine nucle 30.4 41 0.0014 32.0 4.1 38 40-77 91-129 (132)
321 1f62_A Transcription factor WS 30.1 27 0.00091 27.2 2.3 47 601-654 2-48 (51)
322 2l5u_A Chromodomain-helicase-D 30.0 31 0.001 28.2 2.7 48 598-655 10-57 (61)
323 2ecy_A TNF receptor-associated 30.0 8 0.00027 31.6 -0.8 48 599-659 15-62 (66)
324 1d7m_A Cortexillin I; coiled-c 29.7 2.3E+02 0.0077 24.9 8.1 51 797-847 15-65 (101)
325 3mq9_A Bone marrow stromal ant 29.7 1.9E+02 0.0064 32.8 10.4 73 795-869 372-456 (471)
326 2aze_B Transcription factor E2 29.6 86 0.0029 28.6 5.9 35 807-841 6-40 (106)
327 2ro1_A Transcription intermedi 29.5 37 0.0013 34.2 3.9 47 600-656 3-49 (189)
328 1fxk_C Protein (prefoldin); ar 29.4 1.1E+02 0.0037 28.6 7.0 50 795-844 83-132 (133)
329 3l11_A E3 ubiquitin-protein li 29.4 15 0.00053 33.5 0.9 49 598-659 14-62 (115)
330 2yur_A Retinoblastoma-binding 29.4 17 0.00059 30.4 1.1 50 598-658 14-63 (74)
331 3k26_A Polycomb protein EED; W 29.3 4.8E+02 0.016 26.7 31.6 109 245-378 71-191 (366)
332 3u06_A Protein claret segregat 29.2 68 0.0023 36.4 6.4 43 796-838 13-55 (412)
333 3t06_A PDZ-rhogef, RHO guanine 29.2 48 0.0017 37.2 5.2 42 37-78 366-412 (418)
334 2spc_A Spectrin; cytoskeleton; 28.8 1.9E+02 0.0065 25.4 8.3 58 795-852 38-102 (107)
335 1s94_A S-syntaxin; three helix 28.8 2.6E+02 0.0089 27.4 10.0 12 857-868 127-138 (180)
336 2ku3_A Bromodomain-containing 28.7 40 0.0014 28.5 3.3 53 597-657 14-67 (71)
337 1m1j_C Fibrinogen gamma chain; 28.7 1.6E+02 0.0055 33.3 9.2 20 795-814 26-45 (409)
338 1bor_A Transcription factor PM 28.6 37 0.0012 26.8 2.9 45 598-659 5-49 (56)
339 4a11_B DNA excision repair pro 28.6 5.2E+02 0.018 26.9 31.0 255 243-548 43-322 (408)
340 4dzo_A Mitotic spindle assembl 28.5 1E+02 0.0036 28.8 6.5 16 807-822 4-19 (123)
341 2b5u_A Colicin E3; high resolu 28.5 2E+02 0.0067 33.1 9.6 62 805-866 298-359 (551)
342 3e98_A GAF domain of unknown f 28.5 1.8E+02 0.006 30.6 9.1 65 795-867 67-131 (252)
343 2oxj_A Hybrid alpha/beta pepti 28.3 87 0.003 22.5 4.3 27 809-835 3-29 (34)
344 2kwj_A Zinc finger protein DPF 28.3 51 0.0018 30.3 4.3 53 601-660 60-112 (114)
345 1jnm_A Proto-oncogene C-JUN; B 28.1 20 0.00067 29.5 1.2 31 807-837 22-52 (62)
346 2zxx_A Geminin; coiled-coil, c 28.0 2.9E+02 0.01 23.8 9.2 24 796-819 23-46 (79)
347 2l5g_B Putative uncharacterize 28.0 98 0.0033 23.5 4.8 32 795-826 4-35 (42)
348 3axj_B TRAX, translin associat 27.9 76 0.0026 34.4 6.2 77 800-876 32-109 (298)
349 2jee_A YIIU; FTSZ, septum, coi 27.8 3E+02 0.01 23.9 9.3 34 796-829 9-42 (81)
350 1gu4_A CAAT/enhancer binding p 27.6 37 0.0013 29.4 2.9 35 800-834 36-70 (78)
351 2zqm_A Prefoldin beta subunit 27.5 1.4E+02 0.0048 27.0 7.2 46 796-841 66-111 (117)
352 1uo4_A General control protein 27.4 74 0.0025 22.9 3.8 27 809-835 3-29 (34)
353 3p6a_A RHO guanine nucleotide 27.3 66 0.0022 35.4 5.8 41 37-77 330-374 (377)
354 1wg2_A Zinc finger (AN1-like) 27.3 42 0.0015 27.9 3.1 29 598-629 14-42 (64)
355 1fmh_B General control protein 26.9 95 0.0033 21.4 4.1 15 808-822 2-16 (33)
356 2f1m_A Acriflavine resistance 26.7 2.2E+02 0.0077 29.5 9.7 72 804-875 57-138 (277)
357 2kes_A Synphilin-1; synphillin 26.6 2.1E+02 0.0071 21.7 6.3 32 811-842 8-39 (48)
358 1a93_B MAX protein, coiled coi 26.5 76 0.0026 23.0 3.8 28 797-824 4-31 (34)
359 1kd8_B GABH BLL, GCN4 acid bas 26.5 54 0.0019 23.9 3.0 21 795-815 10-30 (36)
360 3tnu_A Keratin, type I cytoske 26.4 3.9E+02 0.013 24.9 10.3 28 795-822 40-67 (131)
361 3oja_A Leucine-rich immune mol 26.4 2.5E+02 0.0086 31.9 10.8 22 851-872 465-486 (487)
362 2z5i_A TM, general control pro 26.3 2.2E+02 0.0076 22.5 7.0 38 800-837 5-42 (52)
363 1wff_A Riken cDNA 2810002D23 p 26.3 39 0.0013 29.7 2.8 30 598-629 24-53 (85)
364 2xyi_A Probable histone-bindin 26.3 6.5E+02 0.022 27.2 25.1 202 255-496 196-409 (430)
365 3htk_A Structural maintenance 26.3 1.4E+02 0.0046 23.9 6.0 6 846-851 47-52 (60)
366 1r5m_A SIR4-interacting protei 26.2 5.8E+02 0.02 26.7 29.1 250 245-547 151-423 (425)
367 3fl2_A E3 ubiquitin-protein li 26.1 12 0.00042 34.7 -0.4 49 598-659 51-99 (124)
368 1deb_A APC protein, adenomatou 26.1 1E+02 0.0035 24.2 4.7 7 855-861 44-50 (54)
369 1ic2_A Tropomyosin alpha chain 26.0 3.1E+02 0.011 23.4 9.9 58 804-868 17-74 (81)
370 2d8t_A Dactylidin, ring finger 26.0 12 0.00042 31.0 -0.4 50 598-661 14-63 (71)
371 3tnu_B Keratin, type II cytosk 25.6 4.1E+02 0.014 24.7 11.0 34 802-835 38-71 (129)
372 1nlw_A MAD protein, MAX dimeri 25.6 48 0.0017 28.7 3.3 32 793-824 47-78 (80)
373 3m91_A Proteasome-associated A 25.5 2.3E+02 0.0079 22.4 6.9 15 806-820 15-29 (51)
374 2ea6_A Ring finger protein 4; 25.3 9.3 0.00032 31.1 -1.3 52 597-658 13-67 (69)
375 3bas_A Myosin heavy chain, str 25.3 1.4E+02 0.0047 26.2 6.3 10 806-815 20-29 (89)
376 3jro_A Fusion protein of prote 25.2 9.2E+02 0.031 28.6 26.3 109 245-378 11-131 (753)
377 3fvz_A Peptidyl-glycine alpha- 25.2 6E+02 0.02 26.4 20.1 21 252-272 24-44 (329)
378 2vpb_A Hpygo1, pygopus homolog 25.1 11 0.00037 31.5 -0.9 55 599-654 8-64 (65)
379 2r2v_A GCN4 leucine zipper; co 25.1 1E+02 0.0034 22.3 4.1 29 809-837 3-31 (34)
380 4h22_A Leucine-rich repeat fli 24.9 1.8E+02 0.0061 26.4 6.9 28 795-822 32-59 (103)
381 1j1j_A Translin; testis/brain 24.9 1.2E+02 0.0041 31.7 6.9 28 848-875 67-94 (240)
382 2no2_A HIP-I, huntingtin-inter 24.8 4E+02 0.014 24.2 11.2 26 797-822 19-44 (107)
383 1gqe_A Release factor 2, RF2; 24.7 2.7E+02 0.0094 30.9 9.9 64 805-876 56-122 (365)
384 3ask_A E3 ubiquitin-protein li 24.6 52 0.0018 34.2 3.9 48 601-655 176-224 (226)
385 1fio_A SSO1 protein; four heli 24.5 2.8E+02 0.0094 27.4 9.4 10 857-866 85-94 (196)
386 1lrz_A FEMA, factor essential 24.5 1.4E+02 0.0049 33.5 8.1 46 795-841 242-287 (426)
387 4aj5_1 SKA3, spindle and kinet 24.4 2.5E+02 0.0084 25.4 7.6 23 825-847 46-68 (101)
388 1wil_A KIAA1045 protein; ring 24.3 28 0.00094 30.6 1.5 54 598-653 14-73 (89)
389 3viq_B Mating-type switching p 24.2 2.4E+02 0.0082 24.7 7.4 29 809-837 3-31 (85)
390 3htk_B Structural maintenance 24.2 3.1E+02 0.011 22.9 10.3 43 826-868 30-72 (73)
391 2ep4_A Ring finger protein 24; 24.2 19 0.00065 29.9 0.5 52 598-660 14-65 (74)
392 1zgk_A Kelch-like ECH-associat 24.1 1.6E+02 0.0053 30.9 7.9 17 479-496 161-177 (308)
393 2egp_A Tripartite motif-contai 24.1 15 0.00052 30.8 -0.2 56 598-660 11-66 (79)
394 3cvf_A Homer-3, homer protein 24.1 1.5E+02 0.005 25.7 6.0 16 854-869 50-65 (79)
395 1jm7_B BARD1, BRCA1-associated 24.0 35 0.0012 31.2 2.3 45 598-658 21-66 (117)
396 2k48_A Nucleoprotein; viral pr 23.9 4.1E+02 0.014 24.1 8.9 27 818-844 39-65 (107)
397 1wfh_A Zinc finger (AN1-like) 23.9 52 0.0018 27.4 3.0 29 598-629 14-42 (64)
398 4f61_I Stathmin-like domain R4 23.9 5.8E+02 0.02 26.5 11.4 9 864-872 112-120 (240)
399 4h8s_A DCC-interacting protein 23.8 54 0.0018 36.8 4.3 37 40-76 362-400 (407)
400 2yru_A Steroid receptor RNA ac 23.7 19 0.00065 33.7 0.4 25 52-76 85-109 (118)
401 2p61_A Hypothetical protein TM 23.6 2.6E+02 0.009 27.3 8.6 72 805-876 49-132 (162)
402 2wt7_A Proto-oncogene protein 23.5 2.3E+02 0.0079 23.1 7.0 9 812-820 28-36 (63)
403 2dgc_A Protein (GCN4); basic d 23.4 1.1E+02 0.0036 25.3 4.8 10 811-820 34-43 (63)
404 4g56_B MGC81050 protein; prote 23.4 6.7E+02 0.023 26.4 29.6 235 245-551 96-345 (357)
405 3gp4_A Transcriptional regulat 23.3 2.1E+02 0.0071 27.2 7.7 35 801-835 82-116 (142)
406 4ani_A Protein GRPE; chaperone 23.3 2.5E+02 0.0085 28.8 8.7 38 795-832 68-105 (213)
407 3v43_A Histone acetyltransfera 23.1 51 0.0017 30.2 3.2 49 601-655 63-111 (112)
408 3m91_A Proteasome-associated A 23.1 2.6E+02 0.0089 22.1 6.7 24 809-832 11-34 (51)
409 2l43_A N-teminal domain from h 22.9 39 0.0013 29.8 2.2 55 598-660 24-79 (88)
410 1lwu_C Fibrinogen gamma chain; 22.9 1.3E+02 0.0045 32.9 6.9 34 809-842 21-54 (323)
411 3pp2_A RHO GTPase-activating p 22.7 75 0.0026 29.2 4.4 35 40-74 88-123 (124)
412 1g25_A CDK-activating kinase a 22.7 7.8 0.00027 31.5 -2.3 54 599-661 3-57 (65)
413 1we9_A PHD finger family prote 22.4 1.1E+02 0.0038 24.8 4.8 55 597-656 4-58 (64)
414 1r5m_A SIR4-interacting protei 22.3 6.8E+02 0.023 26.1 30.9 240 245-548 110-360 (425)
415 4e54_B DNA damage-binding prot 22.2 7.3E+02 0.025 26.8 13.4 28 296-323 251-281 (435)
416 3jro_A Fusion protein of prote 22.0 1E+03 0.036 28.1 24.7 69 245-323 55-131 (753)
417 2kiz_A E3 ubiquitin-protein li 21.9 22 0.00076 29.0 0.4 53 598-661 13-65 (69)
418 3tnu_A Keratin, type I cytoske 21.9 3.2E+02 0.011 25.5 8.7 45 797-841 35-79 (131)
419 3fpp_A Macrolide-specific effl 21.8 2.5E+02 0.0086 30.1 9.2 43 803-845 65-107 (341)
420 1cii_A Colicin IA; bacteriocin 21.8 4.6E+02 0.016 29.8 10.8 18 855-872 428-445 (602)
421 1nty_A Triple functional domai 21.7 1E+02 0.0034 33.0 5.8 37 39-75 268-309 (311)
422 1wfp_A Zinc finger (AN1-like) 21.6 53 0.0018 28.1 2.6 28 599-629 25-52 (74)
423 2lg1_A A-kinase anchor protein 21.4 87 0.003 31.3 4.8 39 38-76 132-174 (185)
424 3mkq_A Coatomer beta'-subunit; 21.4 1E+03 0.035 27.8 32.3 68 245-323 99-171 (814)
425 1gd2_E Transcription factor PA 21.4 2E+02 0.0067 24.3 6.1 11 810-820 32-42 (70)
426 4dci_A Uncharacterized protein 21.4 4.3E+02 0.015 25.5 9.4 62 811-876 33-110 (150)
427 2ckl_B Ubiquitin ligase protei 21.4 13 0.00044 36.4 -1.4 50 598-659 53-102 (165)
428 2djb_A Polycomb group ring fin 21.3 19 0.00067 29.8 -0.1 51 598-661 14-64 (72)
429 2lf0_A Uncharacterized protein 21.2 44 0.0015 31.0 2.2 22 801-822 4-25 (123)
430 3a2a_A Voltage-gated hydrogen 21.2 2.4E+02 0.0082 22.6 6.0 39 807-845 11-49 (58)
431 1fxk_A Prefoldin; archaeal pro 21.2 1.7E+02 0.0058 26.0 6.3 44 796-839 61-104 (107)
432 1xip_A Nucleoporin NUP159; bet 21.1 8.6E+02 0.029 26.8 14.0 138 362-545 41-187 (388)
433 3ghg_A Fibrinogen alpha chain; 21.0 1.4E+02 0.0049 34.4 6.8 28 795-822 52-79 (562)
434 1jm7_A BRCA1, breast cancer ty 21.0 23 0.00079 31.8 0.4 50 599-659 21-70 (112)
435 3etw_A Adhesin A; antiparallel 20.8 4.9E+02 0.017 24.2 9.3 13 802-814 11-23 (119)
436 1t1h_A Gspef-atpub14, armadill 20.7 20 0.00068 30.1 -0.1 50 597-659 6-55 (78)
437 2ecl_A Ring-box protein 2; RNF 20.4 37 0.0013 29.0 1.5 58 592-659 8-76 (81)
438 3zcc_A HAMP, osmolarity sensor 20.3 3.3E+02 0.011 23.0 8.1 50 795-844 36-85 (114)
439 1wfl_A Zinc finger protein 216 20.2 49 0.0017 28.3 2.1 28 599-629 25-52 (74)
440 2v66_B Nuclear distribution pr 20.1 4.6E+02 0.016 24.1 8.8 20 797-816 7-26 (111)
441 1fxk_C Protein (prefoldin); ar 20.1 1.5E+02 0.005 27.7 5.9 45 793-837 88-132 (133)
442 3l6v_A GYRA, DNA gyrase subuni 20.1 8.8E+02 0.03 26.6 26.6 126 249-384 53-185 (370)
443 1e4u_A Transcriptional repress 20.1 28 0.00096 29.8 0.7 55 597-661 9-64 (78)
444 1gmj_A ATPase inhibitor; coile 20.0 1.9E+02 0.0066 25.2 5.9 27 796-822 20-48 (84)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-67 Score=606.53 Aligned_cols=372 Identities=35% Similarity=0.638 Sum_probs=335.3
Q ss_pred ceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCC
Q 001953 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEE 271 (992)
Q Consensus 192 ~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N 271 (992)
..+.+++++|+||+||.|. .||||.+.. .+...|.+++.+...+|++|+||..|+++|+++|+||+||.|
T Consensus 11 ~~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n 80 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80 (389)
T ss_dssp ----------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccceeECCCCeEEEeeCCC-CccCCCCcC---------ccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECC
Confidence 3567899999999999999 999997653 466788888888888999999999999999999999999999
Q ss_pred CCCccCCCCCCCccccEEeeecCCCc--EEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCC
Q 001953 272 SGGRLGHGREADVSHPQLIEILSGVN--VELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLD 349 (992)
Q Consensus 272 ~~GqLG~g~~~~~~~P~~V~~l~~~~--I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~ 349 (992)
.+||||++.......|.++..+.+.. +++|+||.+|++||+++|+||+||.| ..||||+++......|.++.. +.
T Consensus 81 ~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~ 157 (389)
T 3kci_A 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LR 157 (389)
T ss_dssp GGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cC
Confidence 99999999988889999999887764 47888999999999999999999999 459999999988889998874 66
Q ss_pred CCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCC--ceEEEEEEccCCCCC
Q 001953 350 GIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGV--WHTAAVVVATDSSSS 427 (992)
Q Consensus 350 ~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~--~ht~aLve~~~~~~~ 427 (992)
+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|
T Consensus 158 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l--------- 228 (389)
T 3kci_A 158 GIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL--------- 228 (389)
T ss_dssp TSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE---------
T ss_pred CCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE---------
Confidence 788999999999999999999999999999999999999989999999999999999999995 899999
Q ss_pred CCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 001953 428 SPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD 507 (992)
Q Consensus 428 ~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~ 507 (992)
+++|+||+||.|.+||||.++......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 229 -----~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 229 -----TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp -----ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred -----ccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCc
Confidence 777999999999999999999999999999998888899999999999999999999999999999999997654
Q ss_pred -CcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcceeeeccCCCeEEEEEeCCccee
Q 001953 508 -GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTA 586 (992)
Q Consensus 508 -~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~ 586 (992)
...|..+.. +.+.+|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|..+.+.+|.+|+||..||+
T Consensus 304 ~~~~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~ 382 (389)
T 3kci_A 304 HVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382 (389)
T ss_dssp CEEEEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEE
T ss_pred cccCCeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEE
Confidence 356888774 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 001953 587 IICLH 591 (992)
Q Consensus 587 aI~~~ 591 (992)
||+..
T Consensus 383 al~~~ 387 (389)
T 3kci_A 383 AWSTS 387 (389)
T ss_dssp EECC-
T ss_pred EEecC
Confidence 99854
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.5e-65 Score=590.07 Aligned_cols=367 Identities=35% Similarity=0.633 Sum_probs=337.6
Q ss_pred eeeecccceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEE
Q 001953 177 FRISLSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHA 256 (992)
Q Consensus 177 ~r~~~s~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs 256 (992)
+..+...++..++++.|.++|+.+|.||+||.|. +||||.+.. .+...|..+..+...+|++|+||..|+
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht 80 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHT 80 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCC-CCCCCCCCc---------ccCcCCEEecccCCCCEEEEEeCcceE
Confidence 3445567888999999999999999999999999 999999864 455788888888888999999999999
Q ss_pred EEEEcCC-cEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCC
Q 001953 257 VLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSK 335 (992)
Q Consensus 257 ~~Lt~dG-~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~ 335 (992)
++|+.+| +||+||.|.+||||++...+...|.++..+.+.+|++|+||..|+++|+++|+||+||.| ..||||.+..
T Consensus 81 ~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~ 158 (406)
T 4d9s_A 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDT 158 (406)
T ss_dssp EEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSC
T ss_pred EEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC--CCccCCCCCC
Confidence 9999986 999999999999999999888999999999999999999999999999999999999999 4599999999
Q ss_pred ccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceE
Q 001953 336 VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHT 415 (992)
Q Consensus 336 ~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht 415 (992)
.....|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+
T Consensus 159 ~~~~~p~~v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht 237 (406)
T 4d9s_A 159 EDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 237 (406)
T ss_dssp CCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEE
T ss_pred CCcccceEecc-cCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcE
Confidence 88889998874 56778999999999999999999999999999999999999888999999988888999999999999
Q ss_pred EEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeC
Q 001953 416 AAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGS 495 (992)
Q Consensus 416 ~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~ 495 (992)
++| +++|+||+||.|.+||||+++......|..+..+.+.+|++|+||.+|+++|+++|+||+||.
T Consensus 238 ~~l--------------~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 238 ISV--------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp EEE--------------ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEE--------------cCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeC
Confidence 999 777999999999999999999999999999999888899999999999999999999999999
Q ss_pred CCCCCCCCCCCC-CcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcceeeeccC
Q 001953 496 AAYGQLGVPVAD-GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLK 571 (992)
Q Consensus 496 N~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~l~ 571 (992)
|.+||||.+... ...|..+.. +...+|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 304 n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 304 NKFGQVGVGNNLDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp CTTSTTCSSSSSCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCCCCCCCCCCCCccCEEEec-cCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 999999997654 356777763 456789999999999999999999999999999999999999999999998664
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.4e-64 Score=580.94 Aligned_cols=367 Identities=28% Similarity=0.471 Sum_probs=319.5
Q ss_pred CceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeC
Q 001953 191 GSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 191 G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~ 270 (992)
..|.++++.+|+||+||.|. .||||.|... .....|..+.. ..+|++|+||..|+++|+++|+||+||.
T Consensus 17 ~~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~ 85 (413)
T 1a12_A 17 VSHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGC 85 (413)
T ss_dssp CCCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred cccceeecCCCcEEEEECCC-CCcCCCCCCc--------cccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEEC
Confidence 45778999999999999999 9999998632 23457777764 3789999999999999999999999999
Q ss_pred CCCCccCCCCCC--CccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcC--CCCCCCccCCCCCccc-cccceec
Q 001953 271 ESGGRLGHGREA--DVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD--GTYNSGLLGHGSKVSC-WIPRKVS 345 (992)
Q Consensus 271 N~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~--n~~~~GqLG~g~~~~~-~~P~~v~ 345 (992)
|.+||||++... ....|.+|.. . .+|++|+||.+|+++|+++|+||+||. | ..||||.+..... ..|.++
T Consensus 86 n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v- 160 (413)
T 1a12_A 86 NDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQV- 160 (413)
T ss_dssp CTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEE-
T ss_pred CCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcC--CCCccCcCCccccccCCEEe-
Confidence 999999998753 4567888853 2 389999999999999999999999998 7 5599999876543 457777
Q ss_pred cCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcC-----------CCcCeEEeec-----cCCeEEEEE
Q 001953 346 GNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS-----------TSIPREVETL-----RGLRTTRVS 409 (992)
Q Consensus 346 ~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~-----------~~~P~~V~~l-----~~~~I~~Va 409 (992)
+...+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|+.+... ...+|++|+
T Consensus 161 --~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia 238 (413)
T 1a12_A 161 --QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 238 (413)
T ss_dssp --CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEE
T ss_pred --cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEE
Confidence 3456899999999999999999999999999999999975422 2467666543 346899999
Q ss_pred eCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCC--CCeEEEeecCcEEEEEeCC
Q 001953 410 CGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLID--ENICQVACGHDLSVALTTS 487 (992)
Q Consensus 410 cG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htvaLT~d 487 (992)
||.+|+++| +++|+||+||.|.+||||+++......|..|..+.+ .+|++|+||.+|+++|+++
T Consensus 239 ~G~~hs~al--------------t~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~ 304 (413)
T 1a12_A 239 CGAYFTFAI--------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSE 304 (413)
T ss_dssp EETTEEEEE--------------ETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETT
T ss_pred eCCCEEEEE--------------eCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCC
Confidence 999999999 777999999999999999999988899999988766 6799999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCC--CCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcce
Q 001953 488 GHVYTMGSAAYGQLGVPVA--DGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPT 565 (992)
Q Consensus 488 G~Vy~wG~N~~GQLG~~~~--~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt 565 (992)
|+||+||.|.+||||.+.. ....|..+... ..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|+
T Consensus 305 G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~ 381 (413)
T 1a12_A 305 GKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV 381 (413)
T ss_dssp SCEEEEECCGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEE
T ss_pred CCEEEeeCCCCCccCCCCCCccccCCEEeccc---CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCe
Confidence 9999999999999999743 34578877643 279999999999999999999999999999999999998889999
Q ss_pred eeec--cCCCeEEEEEeCCcceeEEEeec
Q 001953 566 LVDF--LKDKQVKRVVCGLNFTAIICLHK 592 (992)
Q Consensus 566 ~V~~--l~~~~V~~IacG~~hT~aI~~~k 592 (992)
+|.. +.+.+|++|+||..||++|+.++
T Consensus 382 ~v~~~~~~~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 382 EMMGKQLENRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp ECCSTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred EccccccCCCeEEEEeeCCCcEEEEEecC
Confidence 9974 57789999999999999999764
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-63 Score=576.53 Aligned_cols=375 Identities=26% Similarity=0.392 Sum_probs=323.1
Q ss_pred ccceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEc
Q 001953 182 SSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261 (992)
Q Consensus 182 s~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~ 261 (992)
..+...+.+..|.++++.+|+||+||.|. .||||.|... .....|.+++.+. +|++|+||..|+++|++
T Consensus 24 ~~~~~ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~ 92 (423)
T 3mvd_K 24 AKRARIAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTK 92 (423)
T ss_dssp -----CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEET
T ss_pred ceeeEEecCCccceeecCCCcEEEEeCCC-CCCCCCCCCC--------ccCcCCeEccCCC--CceEEeeCCCeEEEEeC
Confidence 34445667777889999999999999999 9999998532 3445677776543 68999999999999999
Q ss_pred CCcEEEEeCCCCCccCCCCCCC--ccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcC--CCCCCCccCCCCCcc
Q 001953 262 QGEIFSWGEESGGRLGHGREAD--VSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD--GTYNSGLLGHGSKVS 337 (992)
Q Consensus 262 dG~Vy~WG~N~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~--n~~~~GqLG~g~~~~ 337 (992)
+|+||+||.|.+||||++...+ ...|.+|... .+|++|+||.+|+++|+++|+||+||. | ..||||.+....
T Consensus 93 ~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~ 168 (423)
T 3mvd_K 93 SGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGN 168 (423)
T ss_dssp TSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBC
T ss_pred CCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCC--CCCCcCcCCCCC
Confidence 9999999999999999997654 5678888743 479999999999999999999999999 7 559999998877
Q ss_pred ccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCc-----------CCCcCeEEeeccCCeEE
Q 001953 338 CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-----------STSIPREVETLRGLRTT 406 (992)
Q Consensus 338 ~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~-----------~~~~P~~V~~l~~~~I~ 406 (992)
...|.++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|..+..+...+|+
T Consensus 169 ~~~p~~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~ 245 (423)
T 3mvd_K 169 KRTPIDL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFE 245 (423)
T ss_dssp EEEEEES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEE
T ss_pred CceeeEe---cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEE
Confidence 7777665 456789999999999999999999999999999999998642 45689999888888999
Q ss_pred EEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC--cccceeeccCCCCCeEEEeecCcEEEEE
Q 001953 407 RVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP--RLFPECVAPLIDENICQVACGHDLSVAL 484 (992)
Q Consensus 407 ~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~htvaL 484 (992)
+|+||.+|++++. +.+|+||+||.|.+||||.+.... ...|..+. ..+|++|+||.+|+++|
T Consensus 246 ~i~~g~~~~~~~~-------------~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~al 309 (423)
T 3mvd_K 246 AIWATNYCTFMRE-------------SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVIL 309 (423)
T ss_dssp EEEEETTEEEEEE-------------TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEE
T ss_pred EEEECCcEEEEEE-------------CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEE
Confidence 9999999999983 567999999999999999965443 44555554 36799999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCC--cceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCC
Q 001953 485 TTSGHVYTMGSAAYGQLGVPVADG--LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRN 562 (992)
Q Consensus 485 T~dG~Vy~wG~N~~GQLG~~~~~~--~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~ 562 (992)
+++|+||+||.|.+||||.+.... ..|..+.. +.+ +|++|+||.+|++||+++|+||+||.|.+||||+|+..+..
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 387 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEE
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcc
Confidence 999999999999999999987654 46777764 333 89999999999999999999999999999999999999999
Q ss_pred cceeeec--cCCCeEEEEEeCCcceeEEEeec
Q 001953 563 SPTLVDF--LKDKQVKRVVCGLNFTAIICLHK 592 (992)
Q Consensus 563 ~Pt~V~~--l~~~~V~~IacG~~hT~aI~~~k 592 (992)
.|++|.. +.+.+|.+|+||.+||++|+.+.
T Consensus 388 ~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 388 EPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp EEEECCSTTTTTCCEEEEEECSSEEEEEEECC
T ss_pred cCeEEeCcccCCCEEEEEEECCCcEEEEEccc
Confidence 9999985 67889999999999999999653
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-63 Score=587.80 Aligned_cols=371 Identities=25% Similarity=0.392 Sum_probs=317.5
Q ss_pred eeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeC
Q 001953 193 AHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 193 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~ 270 (992)
|.++++.+|+||+||.|. .||||.|... ...+...|..++.+ ...+|++|+||..|+++|+++|+||+||.
T Consensus 21 h~~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp HHHCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccCCCCccEEEEcCCC-CCccCCCCCc------ccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeEC
Confidence 567889999999999999 9999999732 12455667777665 45689999999999999999999999999
Q ss_pred CCCCccCCCCCCC-----------------------ccccEEeee--c----CCCcEEEEEecCcEEEEEEcCCcEEEEc
Q 001953 271 ESGGRLGHGREAD-----------------------VSHPQLIEI--L----SGVNVELVACGEYHTCAVTRSGDLYTWG 321 (992)
Q Consensus 271 N~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Va~G~~hs~aLT~dG~VysWG 321 (992)
|.+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEee
Confidence 9999999987654 567888875 5 3689999999999999999999999999
Q ss_pred CCCCCCCccCCCCC--ccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcC----CCcCe
Q 001953 322 DGTYNSGLLGHGSK--VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS----TSIPR 395 (992)
Q Consensus 322 ~n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~----~~~P~ 395 (992)
.|.++.||||.+.. .....|.++.. +.+.+|++|+||..|+++||++|+||+||.|.+||||++.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCcCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCce
Confidence 85446799998554 35667888864 5677899999999999999999999999999999999986543 45666
Q ss_pred EEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCC----CcccceeeccCCCCCe
Q 001953 396 EVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKE----PRLFPECVAPLIDENI 471 (992)
Q Consensus 396 ~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~----~~~~P~~V~~l~~~~I 471 (992)
.+.. .+|++|+||.+|++|| +++|+||+||.|.+||||++... ....|+.|..+.+.+|
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~al--------------t~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i 315 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFAL--------------TKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVI 315 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEE--------------ETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCE
T ss_pred ecCC---cceEEEecCCCeEEEE--------------ecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccE
Confidence 6643 4799999999999999 77799999999999999998754 3567999988888899
Q ss_pred EEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC---------------CcceeeecCCcCCCCEEEEEEcCCEEEEE
Q 001953 472 CQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD---------------GLVPTRVDGEIAESFVEEVACGAYHVAAL 536 (992)
Q Consensus 472 ~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~---------------~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aL 536 (992)
++|+||.+|+++|+++|+||+||.|.+||||.+... ...|..+... ..|++|+||.+|++||
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---~~v~~Ia~G~~hs~al 392 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---PKFKSVAAGSHHSVAV 392 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS---CCEEEEEECSSEEEEE
T ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC---CceEEEEeCCCeEEEE
Confidence 999999999999999999999999999999986531 1245555421 2799999999999999
Q ss_pred EcCCcEEEEEcCCCCCCCCCC-CCCCCcceeee--ccCCCeEEEEEeCCcceeEEEee
Q 001953 537 TSTSKVYTWGKGANGQLGHGD-KDNRNSPTLVD--FLKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 537 t~~G~Vy~WG~N~~GQLG~G~-~~~~~~Pt~V~--~l~~~~V~~IacG~~hT~aI~~~ 591 (992)
+++|+||+||.|.+||||+|+ ..+...|++|+ .+.+++|+.|+||.+||+++..+
T Consensus 393 ~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 393 AQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp ETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred eCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 999999999999999999999 77888999998 46778999999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.8e-61 Score=553.25 Aligned_cols=348 Identities=36% Similarity=0.655 Sum_probs=318.5
Q ss_pred CCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCC-cEEEEc
Q 001953 243 ALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSG-DLYTWG 321 (992)
Q Consensus 243 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG-~VysWG 321 (992)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 3589999999999999999999999999999999999999999999999999899999999999999999986 999999
Q ss_pred CCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeecc
Q 001953 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR 401 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 401 (992)
.|. .||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.
T Consensus 95 ~n~--~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WGD--FGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CCG--GGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CCC--CcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 995 59999999888888888874 667789999999999999999999999999999999999998889999999999
Q ss_pred CCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEE
Q 001953 402 GLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLS 481 (992)
Q Consensus 402 ~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht 481 (992)
+.+|++|+||.+|++|| +++|+||+||.|.+||||+++......|..+..+...+|++|+||.+|+
T Consensus 172 ~~~i~~va~G~~hs~al--------------t~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht 237 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAV--------------TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 237 (406)
T ss_dssp TCCEEEEEECSSEEEEE--------------ETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEE
T ss_pred CCcEEEEecCCCeEEEE--------------eCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcE
Confidence 99999999999999999 7789999999999999999999999999999988889999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCC-CcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCC
Q 001953 482 VALTTSGHVYTMGSAAYGQLGVPVAD-GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDN 560 (992)
Q Consensus 482 vaLT~dG~Vy~wG~N~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~ 560 (992)
++|+++|+||+||.|.+||||.+... ...|..+.. +.+.+|++|+||.+|++||+++|+||+||.|.+||||+|+..+
T Consensus 238 ~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 316 (406)
T 4d9s_A 238 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 316 (406)
T ss_dssp EEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC
T ss_pred EEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCC
Confidence 99999999999999999999997643 456777774 6678899999999999999999999999999999999999999
Q ss_pred CCcceeeeccCCCeEEEEEeCCcceeEEEeeccccccccCcCCCCCCCCCcccccccccCCC
Q 001953 561 RNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCG 622 (992)
Q Consensus 561 ~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG 622 (992)
...|++|..+.+.+|++|+||.+|++||+.+ +..|.|++..+.+.+-|
T Consensus 317 ~~~p~~v~~~~~~~v~~va~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g 364 (406)
T 4d9s_A 317 QCSPVQVRFPDDQKVVQVSCGWRHTLAVTER--------------NNVFAWGRGTNGQLGIG 364 (406)
T ss_dssp EEEEEEECCGGGCCEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSS
T ss_pred CccCEEEeccCCCcEEEEEeCCCeEEEEeCC--------------CCEEEecCCCCCccCCC
Confidence 9999999988888999999999999999843 34555665555554433
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-57 Score=517.24 Aligned_cols=331 Identities=33% Similarity=0.587 Sum_probs=301.5
Q ss_pred ccceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCC--EEEEEeCCcEEEEE
Q 001953 182 SSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALD--VHNIACGARHAVLV 259 (992)
Q Consensus 182 s~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~--I~~Ia~G~~hs~~L 259 (992)
..+++.+++..|.++|+.+|+||+||.|. .||||.+.. .+...|..++.+.... +++|+||..|+++|
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~---------~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al 122 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGA-GGRLGIGGT---------ESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCG-GGTTSSSSS---------CCEEEEEECGGGTTSCEEEEEECTTCSEEEEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCC-CCCCCCCCc---------CCccCCEEcccccCCceeEEEECcCCCeEEEE
Confidence 35667778888999999999999999999 999999863 4556788888776654 47889999999999
Q ss_pred EcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCcccc
Q 001953 260 TKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCW 339 (992)
Q Consensus 260 t~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~ 339 (992)
+++|+||+||.|.+||||++.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|. .||||+++.....
T Consensus 123 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~--~GqLG~~~~~~~~ 200 (389)
T 3kci_A 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGR--YGRLGHSDSEDQL 200 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCG--GGTTCSSSCCCEE
T ss_pred cCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCC--CCCcCCCCCcccc
Confidence 99999999999999999999988889999999999999999999999999999999999999995 4999999998888
Q ss_pred ccceeccCCCCCcEEEEEECc--ceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEE
Q 001953 340 IPRKVSGNLDGIHLSYISCGL--WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAA 417 (992)
Q Consensus 340 ~P~~v~~~l~~~~Iv~VacG~--~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~a 417 (992)
.|.++.. +.+.+|++|+||. .|+++|+++|+||+||.|.+||||+++......|.+|..+.+.+|++|+||.+|++|
T Consensus 201 ~p~~v~~-~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 201 KPKLVEA-LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp EEEECGG-GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEE
T ss_pred cceEecc-cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEE
Confidence 9998874 6678899999995 899999999999999999999999999888889999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCC
Q 001953 418 VVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAA 497 (992)
Q Consensus 418 Lve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~ 497 (992)
| +++|+||+||.|.+||||+++......|..|..+.+.+|++|+||.+|+++|+++|+||+||.|.
T Consensus 280 l--------------t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 280 L--------------TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp E--------------ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred E--------------eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 9 77899999999999999999999999999999888889999999999999999999999999999
Q ss_pred CCCCCCCCCCC-cceeeecCCcCCCCEEEEEEcCCEEEEEEcCC
Q 001953 498 YGQLGVPVADG-LVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540 (992)
Q Consensus 498 ~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (992)
+||||.+.... ..|..|. .+.+.+|++|+||.+|++||++++
T Consensus 346 ~GqLG~g~~~~~~~P~~v~-~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 346 EGQLGDGTTNAIQRPRLVA-ALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp TSTTCSSSCCCEEEEEECG-GGTTSCCCEEEEETTEEEEECC--
T ss_pred CCcCCCCCCCCccCcEEec-ccCCCCEEEEEecCCcEEEEecCC
Confidence 99999987544 5788886 467788999999999999998754
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4e-55 Score=507.81 Aligned_cols=321 Identities=22% Similarity=0.336 Sum_probs=275.5
Q ss_pred CCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCC-CCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEc
Q 001953 243 ALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGRE-ADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321 (992)
Q Consensus 243 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG 321 (992)
..++++|+||..|+++|+++|+||+||.|.+||||++.. .....|.++..+. .|++|+||..|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 347889999999999999999999999999999999965 4566788888775 5899999999999999999999999
Q ss_pred CCCCCCCccCCCCCcc--ccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEec--CCCCCCCCCCCcCCCcCeEE
Q 001953 322 DGTYNSGLLGHGSKVS--CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD--GSFGALGHGDHISTSIPREV 397 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~--~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~--n~~GqLG~g~~~~~~~P~~V 397 (992)
.|. .||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.+
T Consensus 101 ~n~--~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~- 174 (423)
T 3mvd_K 101 CND--EGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID- 174 (423)
T ss_dssp CCS--SSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEE-
T ss_pred CCC--CcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeE-
Confidence 994 59999997654 567777753 2369999999999999999999999999 9999999988776655544
Q ss_pred eeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCC-----------CCcccceeeccC
Q 001953 398 ETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK-----------EPRLFPECVAPL 466 (992)
Q Consensus 398 ~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~-----------~~~~~P~~V~~l 466 (992)
.+.+.+|++|+||.+|++|| +++|+||+||.|.+||||++.. .....|..+..+
T Consensus 175 -~~~~~~i~~va~G~~hs~al--------------t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~ 239 (423)
T 3mvd_K 175 -LMEGTVCCSIASGADHLVIL--------------TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239 (423)
T ss_dssp -SSTTCCEEEEEECSSEEEEE--------------ETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT
T ss_pred -ecCCCcEEEEecCCCeEEEE--------------ecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec
Confidence 46677899999999999999 7789999999999999999864 245688888877
Q ss_pred CCCCeEEEeecCcEEEEE-eCCCcEEEEeCCCCCCCCCCCC-CC--cceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcE
Q 001953 467 IDENICQVACGHDLSVAL-TTSGHVYTMGSAAYGQLGVPVA-DG--LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKV 542 (992)
Q Consensus 467 ~~~~I~~Ia~G~~htvaL-T~dG~Vy~wG~N~~GQLG~~~~-~~--~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~V 542 (992)
...+|++|+||.+|++++ +.+|+||+||.|.+||||.+.. .. ..|..+. ...|++|+||.+|+++|+++|+|
T Consensus 240 ~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v 315 (423)
T 3mvd_K 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKC 315 (423)
T ss_dssp TCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCE
T ss_pred CCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC----CCCeEEEEcccCeEEEEeCCCcE
Confidence 778999999999999999 6999999999999999999443 22 2444443 35799999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCC-CCcceeeeccCCCeEEEEEeCCcceeEEEee
Q 001953 543 YTWGKGANGQLGHGDKDN-RNSPTLVDFLKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 543 y~WG~N~~GQLG~G~~~~-~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~ 591 (992)
|+||.|.+||||+|+..+ ...|++|+.+.+ +|++|+||.+|++||+.+
T Consensus 316 ~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp EEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred EEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC
Confidence 999999999999998766 467999998877 899999999999999843
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.7e-54 Score=501.45 Aligned_cols=331 Identities=27% Similarity=0.461 Sum_probs=285.5
Q ss_pred ccceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEc
Q 001953 182 SSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261 (992)
Q Consensus 182 s~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~ 261 (992)
..++++++++.|.++|+.+|+||+||.|. .||||.+... ......|..+.. ..+|++|+||..|+++|++
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~ 128 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVEL--QEKVVQVSAGDSHTAALTD 128 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCC--CSCEEEEEECSSEEEEEET
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCC-CCCCCCCCCC-------CccccCCeEecC--CCcEEEEecCCCeEEEEcC
Confidence 56778888999999999999999999999 9999988631 134567887743 3489999999999999999
Q ss_pred CCcEEEEeC--CCCCccCCCCCCCc-cccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCc--
Q 001953 262 QGEIFSWGE--ESGGRLGHGREADV-SHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKV-- 336 (992)
Q Consensus 262 dG~Vy~WG~--N~~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~-- 336 (992)
+|+||+||. |.+||||++..... ..|..| +...+|++|+||.+|+++|+++|+||+||.|. .||||.+...
T Consensus 129 ~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~--~GqLG~~~~~~~ 204 (413)
T 1a12_A 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGE--QGQLGRVPELFA 204 (413)
T ss_dssp TSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCT--TSTTCSCGGGTS
T ss_pred CCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCC--CCccCCCccccc
Confidence 999999999 99999999865543 347766 45679999999999999999999999999995 5999987542
Q ss_pred ---------cccccceeccCC----CCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccC-
Q 001953 337 ---------SCWIPRKVSGNL----DGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRG- 402 (992)
Q Consensus 337 ---------~~~~P~~v~~~l----~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~- 402 (992)
....|..+.... ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|+.|..+.+
T Consensus 205 ~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 205 NRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 284 (413)
T ss_dssp SSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT
T ss_pred cccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCC
Confidence 224665554321 456899999999999999999999999999999999999888889999998877
Q ss_pred -CeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCC-CCCCcccceeeccCCCCCeEEEeecCcE
Q 001953 403 -LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHG-DKEPRLFPECVAPLIDENICQVACGHDL 480 (992)
Q Consensus 403 -~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g-~~~~~~~P~~V~~l~~~~I~~Ia~G~~h 480 (992)
.+|++|+||.+|+++| +++|+||+||.|.+||||++ +......|+.|..+. +|++|+||.+|
T Consensus 285 ~~~v~~ia~G~~hs~al--------------~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~h 348 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCM--------------DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASV 348 (413)
T ss_dssp TCCEEEEEECSSEEEEE--------------ETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSE
T ss_pred CceEEEEecccceEEEE--------------eCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcce
Confidence 6799999999999999 77799999999999999999 566778899998764 89999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCC-CCcceeeecCC-cCCCCEEEEEEcCCEEEEEEcCCcE
Q 001953 481 SVALTTSGHVYTMGSAAYGQLGVPVA-DGLVPTRVDGE-IAESFVEEVACGAYHVAALTSTSKV 542 (992)
Q Consensus 481 tvaLT~dG~Vy~wG~N~~GQLG~~~~-~~~~P~~v~~~-l~~~~V~~Ia~G~~Ht~aLt~~G~V 542 (992)
+++|+++|+||+||.|.+||||.+.. +...|.++... +.+.+|++|+||.+|+++|+++|++
T Consensus 349 s~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 349 GYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred EEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 99999999999999999999999764 34678888753 5667899999999999999998864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-54 Score=510.57 Aligned_cols=343 Identities=22% Similarity=0.348 Sum_probs=286.3
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCC---CCccccEEeeec--CCCcEEEEEecCcEEEEEEcCCcEEE
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGRE---ADVSHPQLIEIL--SGVNVELVACGEYHTCAVTRSGDLYT 319 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~Vys 319 (992)
.|....++..|+++++.+|+||+||.|.+||||+|.. .+...|.++..+ .+.+|++|+||..|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 4667788899999999999999999999999999984 356778888766 56789999999999999999999999
Q ss_pred EcCCCCCCCccCCCCCcc-----------------------ccccceecc--CC---CCCcEEEEEECcceeEEEecCCe
Q 001953 320 WGDGTYNSGLLGHGSKVS-----------------------CWIPRKVSG--NL---DGIHLSYISCGLWHTAVVTSAGH 371 (992)
Q Consensus 320 WG~n~~~~GqLG~g~~~~-----------------------~~~P~~v~~--~l---~~~~Iv~VacG~~hs~aLT~dG~ 371 (992)
||.| ..||||.+.... ...|.+|.. +. .+.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred eECC--CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCe
Confidence 9999 559999987654 456777763 22 46789999999999999999999
Q ss_pred EEEEec--CCCCCCCCCCC--cCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCC
Q 001953 372 LFTFGD--GSFGALGHGDH--ISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKG 447 (992)
Q Consensus 372 Vy~wG~--n~~GqLG~g~~--~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~G 447 (992)
||+||. |.+||||++.. .....|..|..+.+.+|++|+||.+|++|| +++|+||+||.|.+|
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~al--------------t~~G~v~~wG~n~~G 234 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFL--------------DEEGMVFAWGNGQQN 234 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEE--------------ETTSCEEEEECCTTS
T ss_pred EEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEE--------------eCCCeEEEEeCCCCC
Confidence 999998 68999998644 345679999989888999999999999999 778999999999999
Q ss_pred CCCCCCCCC----cccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC-----CcceeeecCCc
Q 001953 448 RLGHGDKEP----RLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD-----GLVPTRVDGEI 518 (992)
Q Consensus 448 QLG~g~~~~----~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~-----~~~P~~v~~~l 518 (992)
|||++.... ...|..+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+... ...|..+. .+
T Consensus 235 qLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~-~~ 310 (473)
T 3of7_A 235 QLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA-LP 310 (473)
T ss_dssp TTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC-CC
T ss_pred CCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccc-cc
Confidence 999987544 456666642 689999999999999999999999999999999987643 24577776 45
Q ss_pred CCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCC--------------CCCcceeeeccCCCeEEEEEeCCcc
Q 001953 519 AESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKD--------------NRNSPTLVDFLKDKQVKRVVCGLNF 584 (992)
Q Consensus 519 ~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~--------------~~~~Pt~V~~l~~~~V~~IacG~~h 584 (992)
.+..|++|+||.+|+++|+++|+||+||.|.+||||++... ....|++|..+. +|++|+||.+|
T Consensus 311 ~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~h 388 (473)
T 3of7_A 311 DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHH 388 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSE
T ss_pred CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCe
Confidence 67889999999999999999999999999999999987531 123566666443 69999999999
Q ss_pred eeEEEeeccccccccCcCCCCCCCCCcccccccccCCCc
Q 001953 585 TAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGL 623 (992)
Q Consensus 585 T~aI~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~ 623 (992)
++||+.+ +..|.|+...+.+.+.|.
T Consensus 389 s~al~~~--------------G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 389 SVAVAQN--------------GIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp EEEEETT--------------SCEEEEECCTTCTTCCCS
T ss_pred EEEEeCC--------------CcEEEeeCCCCCCCCCCC
Confidence 9999833 345666665555554443
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=8.4e-49 Score=431.86 Aligned_cols=249 Identities=27% Similarity=0.431 Sum_probs=213.9
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCC
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGT 324 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 324 (992)
+|++|+||..|+++|+ +|+||+||.|.+||||... ....+|++|+||.+|+++|+ +|+||+||.|.
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------------~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------------GGGSCCCEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------------cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCC
Confidence 7999999999999998 9999999999999999521 11237999999999999996 99999999995
Q ss_pred CCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCe
Q 001953 325 YNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR 404 (992)
Q Consensus 325 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~ 404 (992)
.||||. |.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||... ....+
T Consensus 91 --~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~------------~~~~~ 142 (282)
T 3qhy_B 91 --DGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA------------EAQSG 142 (282)
T ss_dssp --TSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG------------GGGSS
T ss_pred --CCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc------------cCCCC
Confidence 599985 44442 36999999999999999 9999999999999998421 12236
Q ss_pred EEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEE
Q 001953 405 TTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVAL 484 (992)
Q Consensus 405 I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaL 484 (992)
|++|+||.+|+++| + +|+||+||.|.+||||. |..+ ..+|++|+||.+|+++|
T Consensus 143 i~~i~~G~~~~~~l--------------~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al 195 (282)
T 3qhy_B 143 VTALDGGVYTALAV--------------K-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL 195 (282)
T ss_dssp EEEEEECSSEEEEE--------------E-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE
T ss_pred eEEEEcccCEEEEE--------------E-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE
Confidence 99999999999999 5 59999999999999983 3322 46799999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcc
Q 001953 485 TTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSP 564 (992)
Q Consensus 485 T~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~P 564 (992)
++|+||+||.|.+||||.+.. . ...|++|+||.+|+++|+ +|+||+||.|.+||++..
T Consensus 196 -~~G~v~~wG~n~~gqlg~p~~-------~-----~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------- 253 (282)
T 3qhy_B 196 -KDGKVIAWGDNRYKQTTVPTE-------A-----LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------- 253 (282)
T ss_dssp -ETTEEEEEECCTTSTTCCCGG-------G-----GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------
T ss_pred -ECCeEEEEECCCCCCCCCCcc-------c-----CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------
Confidence 899999999999999996531 1 245999999999999999 999999999999998751
Q ss_pred eeeeccCCCeEEEEEeCCcceeEEEeec
Q 001953 565 TLVDFLKDKQVKRVVCGLNFTAIICLHK 592 (992)
Q Consensus 565 t~V~~l~~~~V~~IacG~~hT~aI~~~k 592 (992)
..|++|+||..|+++|+.+.
T Consensus 254 --------~~v~~iaaG~~h~~al~~~~ 273 (282)
T 3qhy_B 254 --------SGVSSIEAGPNAAYALKGGS 273 (282)
T ss_dssp --------SCEEEEEECSSCEEEEEC--
T ss_pred --------CCcEEEEECcCeEEEEecCC
Confidence 15999999999999999653
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.3e-43 Score=387.26 Aligned_cols=252 Identities=25% Similarity=0.397 Sum_probs=210.1
Q ss_pred cceeecCCCceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcC
Q 001953 183 SVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQ 262 (992)
Q Consensus 183 ~~vs~~s~G~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~d 262 (992)
.+++.+++..|.++|+ +|+||+||.|. .||||... . ...+|++|+||..|+++|+ +
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~-~Gqlg~p~-----------------~----~~~~i~~ia~G~~hs~~l~-~ 80 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANL-NGQLTMPA-----------------A----TQSGVDAIAAGNYHSLALK-D 80 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCS-SSTTSCCG-----------------G----GGSCCCEEEECSSEEEEEE-T
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCC-CCCCCCCc-----------------c----CCCCEEEEEeCCCEEEEEE-C
Confidence 5677888888999998 99999999999 89999531 1 1237999999999999996 9
Q ss_pred CcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccc
Q 001953 263 GEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPR 342 (992)
Q Consensus 263 G~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~ 342 (992)
|+||+||.|.+||||. |..+ ..+|++|+||.+|+++|+ +|+||+||.|. .||||.. .
T Consensus 81 G~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~--~gqlg~~--------~ 137 (282)
T 3qhy_B 81 GEVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDS--DGQTTVP--------A 137 (282)
T ss_dssp TEEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCT--TSTTSCC--------G
T ss_pred CEEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCC--CCcCCCC--------c
Confidence 9999999999999996 3322 247999999999999999 99999999994 5999842 2
Q ss_pred eeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEcc
Q 001953 343 KVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVAT 422 (992)
Q Consensus 343 ~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~ 422 (992)
.. ..+|++|+||..|+++|+ +|+||+||.|.+||||. |..+ ..+|++|+||.+|+++| +
T Consensus 138 ~~-----~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~-- 196 (282)
T 3qhy_B 138 EA-----QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-K-- 196 (282)
T ss_dssp GG-----GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-E--
T ss_pred cC-----CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-E--
Confidence 21 235999999999999999 89999999999999983 3222 34799999999999999 4
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCC
Q 001953 423 DSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLG 502 (992)
Q Consensus 423 ~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG 502 (992)
+|+||+||.|.+||||.+. . ...+|++|+||..|+++|+ +|+||+||.|.+||++
T Consensus 197 ------------~G~v~~wG~n~~gqlg~p~--------~----~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 197 ------------DGKVIAWGDNRYKQTTVPT--------E----ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp ------------TTEEEEEECCTTSTTCCCG--------G----GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGG
T ss_pred ------------CCeEEEEECCCCCCCCCCc--------c----cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCcccc
Confidence 2999999999999998532 1 1256999999999999999 9999999999999986
Q ss_pred CCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEE
Q 001953 503 VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVY 543 (992)
Q Consensus 503 ~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy 543 (992)
.+ ..|++|+||..|++||+.+++.+
T Consensus 252 v~----------------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 252 VQ----------------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp GS----------------SCEEEEEECSSCEEEEEC-----
T ss_pred CC----------------CCcEEEEECcCeEEEEecCCCCC
Confidence 42 25999999999999999988654
No 13
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.59 E-value=7.9e-16 Score=149.89 Aligned_cols=77 Identities=26% Similarity=0.614 Sum_probs=65.8
Q ss_pred eeEeeCC------CcceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcC--CCceeeeCCHHHHHHHHHHHHHHH
Q 001953 2 LIWYSGK------EERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 2 l~w~~~~------k~k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~--~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
++|++++ +++.|.|++|++||+|++|+.|++|..+.++++||||||+. ++|||||.|++||+.||+||++|+
T Consensus 41 ~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~ 120 (131)
T 1mai_A 41 TIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII 120 (131)
T ss_dssp EEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4688532 25569999999999999999999999888899999999954 699999999999999999999999
Q ss_pred hcCCC
Q 001953 74 TRGTH 78 (992)
Q Consensus 74 ~~~~~ 78 (992)
.+.++
T Consensus 121 ~~~~~ 125 (131)
T 1mai_A 121 HHSGS 125 (131)
T ss_dssp C----
T ss_pred Hhhhh
Confidence 87654
No 14
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.6e-14 Score=124.50 Aligned_cols=72 Identities=28% Similarity=0.618 Sum_probs=64.4
Q ss_pred eccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCC----CCCcccChhhHHhhhcccc
Q 001953 591 HKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSI----NKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 591 ~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~----~kp~RvC~~C~~~l~~~~~ 662 (992)
..|+++.+...|+.|...|++.++||||++||.+||..|+++++.++.++... .+++|||+.||..|.+...
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~~ 81 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSGP 81 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCCS
T ss_pred CccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccCC
Confidence 57999999999999999999999999999999999999999998888776432 3889999999999988643
No 15
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.33 E-value=3.1e-13 Score=121.12 Aligned_cols=68 Identities=34% Similarity=0.810 Sum_probs=61.9
Q ss_pred eccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 591 HKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 591 ~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
..|+++.+...|..|...|++.++||||++||.+||..|++++..++.++ ..+|+|||+.||..|++.
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~--~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRG--ITEPERVCDACYLALRSS 80 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTT--EEEEEECCHHHHHHHHTS
T ss_pred CccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCC--CCCCCEECHHHHHHHhhc
Confidence 47999999999999999999999999999999999999999988776654 469999999999999875
No 16
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.32 E-value=5.5e-13 Score=118.97 Aligned_cols=72 Identities=35% Similarity=0.811 Sum_probs=56.4
Q ss_pred eEEEeeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 586 AIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 586 ~aI~~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
.++..+.|+++.+...|..|+..|++++++|||++||.+||..|++.++.++. ..+|+|||+.||..|.+..
T Consensus 6 ~~~~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~ 77 (82)
T 2yw8_A 6 QALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQRC 77 (82)
T ss_dssp ---------CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC--
T ss_pred hhcCCCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHhc
Confidence 34566789999999999999999999999999999999999999998866543 4699999999999998754
No 17
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.27 E-value=1.8e-12 Score=124.77 Aligned_cols=65 Identities=38% Similarity=0.948 Sum_probs=58.8
Q ss_pred eccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 591 HKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 591 ~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+.|+++.+...|+.|...|++++++|||++||.+||..|+++++..+ ...+|+|||+.||..|+.
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p----~~~~p~RVC~~C~~~l~g 125 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP----SSKKPVRVCDACFNDLQG 125 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCT----TCSSCEEECHHHHHHTTC
T ss_pred CccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccC----CCCCCCEeCHHHHHHhcC
Confidence 57999999999999999999999999999999999999999886554 347999999999998863
No 18
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=117.82 Aligned_cols=69 Identities=33% Similarity=0.816 Sum_probs=61.3
Q ss_pred eeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcccc
Q 001953 590 LHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
.+.|+++.+...|..|...|++.+++|||++||.+||..|+++++.++. ..+|+|||+.||..|++...
T Consensus 11 ~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQY----LEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp CCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETT----TTEEEEECHHHHHHHHHHC-
T ss_pred CCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCC----CCCCCeECHHHHHHHHHHhh
Confidence 3579999999999999999999999999999999999999999876643 35899999999999998754
No 19
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.23 E-value=1.9e-12 Score=112.94 Aligned_cols=66 Identities=35% Similarity=0.801 Sum_probs=57.0
Q ss_pred eeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 590 LHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
.+.|+++ ..|+.|+..|++.++||||++||.+||..|+++++.++.++ ..+|+|||+.||..|+..
T Consensus 5 ~p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~--~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 5 PADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLG--IYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp --CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGT--EEEEEEECHHHHHHHHHH
T ss_pred CCcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCC--CCCCCEECHHHHHHHHHH
Confidence 3567775 47999999999999999999999999999999998887776 458999999999998764
No 20
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.15 E-value=1.4e-11 Score=111.20 Aligned_cols=62 Identities=32% Similarity=0.647 Sum_probs=55.5
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
.+...|+.|...|++.++||||++||.+||..|+++++.++.++ .+|+|||+.||..|.+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhcc
Confidence 34667999999999999999999999999999999998877665 489999999999998864
No 21
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.10 E-value=2e-11 Score=129.56 Aligned_cols=68 Identities=34% Similarity=0.862 Sum_probs=57.3
Q ss_pred eeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcccc
Q 001953 590 LHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
.+.|++ ...|..|+..|++.++||||++||.+||..|++++...+.++ ..+|+|||+.||..|++..+
T Consensus 158 ~p~W~~---~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~--~~~~~RVC~~C~~~l~~~~e 225 (226)
T 3zyq_A 158 APDWVD---AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYEQLNRKAE 225 (226)
T ss_dssp CCCCCC---CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGT--EEEEEEECHHHHHHHCC---
T ss_pred cccccc---CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCC--CCCCCEeCHHHHHHhhhhcc
Confidence 355765 357999999999999999999999999999999998877665 45899999999999988654
No 22
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.06 E-value=3.7e-11 Score=127.10 Aligned_cols=65 Identities=37% Similarity=0.952 Sum_probs=56.8
Q ss_pred eeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 590 LHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
.+.|+++ ..|..|+..|++.++|||||+||.+||..|++++...+.++ ..+|+|||+.||..|++
T Consensus 155 ~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~--~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 155 APNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYG--IEKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGT--EEEEEEECHHHHHHHHH
T ss_pred cccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCC--CCCCCEeCHHHHHHHhc
Confidence 3457654 68999999999999999999999999999999998777665 46999999999999875
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.00 E-value=9.1e-11 Score=111.32 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=45.7
Q ss_pred cccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcccc
Q 001953 593 WVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 593 wv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
|+++.+...|..|+..|++.++||||++||.+||..|++++.. ++|||+.||..+.....
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~~~ 72 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATAFQ 72 (120)
T ss_dssp -------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTTTC
T ss_pred CcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcccc
Confidence 6678888899999999999999999999999999999998752 49999999998876543
No 24
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.85 E-value=1.7e-09 Score=134.13 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=63.0
Q ss_pred CeeEeeCCCcce-eeccceeeeccCccCcc-----cccCCC-----CCCCCceEEEEEcCC-----CceeeeCCHHHHHH
Q 001953 1 MLIWYSGKEERQ-LKLNQVSRIIPGQRTAT-----FQRYPR-----PEKEYQSFSLIYNDR-----SLDLICKDKDEAEV 64 (992)
Q Consensus 1 ~l~w~~~~k~k~-~~~~~v~~v~~G~~t~~-----f~~~~~-----~~~~~~~fs~i~~~~-----sLdLi~~~~~ea~~ 64 (992)
.|.|.+.+|++. |.|++|++||.|+.|+. ||++.. ...+++||||||+.+ +|||||.|+++|+.
T Consensus 50 ~L~W~~~~ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~ 129 (885)
T 3ohm_B 50 FLYWTGPNMEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKV 129 (885)
T ss_dssp EEEEECGGGCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC---------CTTEEEEEECSSGGGCEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCCceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCcccccEEEEEECCCCccceEEEEEeCChHHHHH
Confidence 378999877665 99999999999998877 777643 578899999999542 59999999999999
Q ss_pred HHHHHHHHHhcC
Q 001953 65 WLVGLKALITRG 76 (992)
Q Consensus 65 W~~gL~~l~~~~ 76 (992)
|++||++|+.+.
T Consensus 130 W~~gL~~L~~~~ 141 (885)
T 3ohm_B 130 WSEELFKLAMNI 141 (885)
T ss_dssp HHHHHHHHHHCH
T ss_pred HHHHHHHHHhhh
Confidence 999999999864
No 25
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.83 E-value=1.6e-09 Score=133.65 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=62.7
Q ss_pred CeeEeeCCCc--ceeeccceeeeccCccCcc-----ccc----CC--CCCCCCceEEEEEcC--CCc---eeeeCCHHHH
Q 001953 1 MLIWYSGKEE--RQLKLNQVSRIIPGQRTAT-----FQR----YP--RPEKEYQSFSLIYND--RSL---DLICKDKDEA 62 (992)
Q Consensus 1 ~l~w~~~~k~--k~~~~~~v~~v~~G~~t~~-----f~~----~~--~~~~~~~~fs~i~~~--~sL---dLi~~~~~ea 62 (992)
.|+|.+++|+ +.|.|++|++||.|++|+. +|+ ++ .+..|++||||||+. .+| ||||.+++||
T Consensus 51 ~L~W~~~~k~~~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A 130 (816)
T 3qr0_A 51 FLYWKIEGKEDTQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNIPLQDKCVTICHGYNYIDLEWTHLVAENSSVA 130 (816)
T ss_dssp EEEECCTTCSSCEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTSCHHHHEEEEEECSSSSSCEEEEEEESSHHHH
T ss_pred EEEEeCCCCCcCcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCcccccccEEEEEECCCcccceEEEEeeCCHHHH
Confidence 3789998775 4599999999999999963 333 43 245678999999954 377 9999999999
Q ss_pred HHHHHHHHHHHhcC
Q 001953 63 EVWLVGLKALITRG 76 (992)
Q Consensus 63 ~~W~~gL~~l~~~~ 76 (992)
++|++||++|+.+.
T Consensus 131 ~~W~~gL~~L~~~~ 144 (816)
T 3qr0_A 131 KKWSEEVFSYAYNL 144 (816)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 26
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=98.81 E-value=4.8e-10 Score=130.12 Aligned_cols=68 Identities=32% Similarity=0.692 Sum_probs=0.0
Q ss_pred eeccccccccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 590 LHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 590 ~~kwv~~~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
.+.|+++.+...|..|+..|++.+++|||++||.+||..|+++++..+.. ..+|+|||+.||..|.+.
T Consensus 366 ~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~---~~~~~rvC~~C~~~l~~~ 433 (434)
T 3mpx_A 366 PPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL---KDRMAKVCDGCFGELKKR 433 (434)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC---CCCcCEecHHHHHHHHhC
Confidence 36799999999999999999999999999999999999999988766432 468999999999998764
No 27
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.78 E-value=4.4e-09 Score=130.27 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=64.1
Q ss_pred eeEeeCCCc-ceeeccceeeeccCccCc------ccccC----CCCCCCCceEEEEEcC--C---CceeeeCCHHHHHHH
Q 001953 2 LIWYSGKEE-RQLKLNQVSRIIPGQRTA------TFQRY----PRPEKEYQSFSLIYND--R---SLDLICKDKDEAEVW 65 (992)
Q Consensus 2 l~w~~~~k~-k~~~~~~v~~v~~G~~t~------~f~~~----~~~~~~~~~fs~i~~~--~---sLdLi~~~~~ea~~W 65 (992)
|+|.+.+|+ +.|.|++|++||.|+.|+ +++++ +....+++||||||+. + +|||||.+++||+.|
T Consensus 47 l~W~~~~k~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~W 126 (799)
T 2zkm_X 47 LYWTYQSKEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAW 126 (799)
T ss_dssp EEEEETTSCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHH
T ss_pred EEEccCCCcCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccccccceEEEEECCCccceeEEEEEeCCHHHHHHH
Confidence 799987664 669999999999999997 45555 2356789999999943 2 589999999999999
Q ss_pred HHHHHHHHhcCC
Q 001953 66 LVGLKALITRGT 77 (992)
Q Consensus 66 ~~gL~~l~~~~~ 77 (992)
++||++|+.+..
T Consensus 127 v~GL~~L~~~~~ 138 (799)
T 2zkm_X 127 AEDVLALVKHPL 138 (799)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 28
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=98.32 E-value=5.5e-07 Score=93.43 Aligned_cols=64 Identities=25% Similarity=0.502 Sum_probs=52.5
Q ss_pred eeeccceeeeccCccCcccccCC----CCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 12 QLKLNQVSRIIPGQRTATFQRYP----RPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 12 ~~~~~~v~~v~~G~~t~~f~~~~----~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
.|+|++|++|+.|..++.++... ......++|||||+. .+|||||.|+++|.+|+.||++|+..
T Consensus 83 kI~ls~Is~V~sg~~~p~~~~~~~~k~~~~~~~laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~Llg~ 151 (203)
T 3a98_B 83 KLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGK 151 (203)
T ss_dssp EEEGGGEEEEEEGGGSTTC--------CCTTGGGEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred ceeHhhhhHhhcCCCCccccccccccccCcccceEEEEecCCCceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 49999999999999999886432 122345899999954 69999999999999999999999974
No 29
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=96.04 E-value=0.017 Score=57.66 Aligned_cols=74 Identities=14% Similarity=0.321 Sum_probs=55.3
Q ss_pred eeEeeCCC----cc-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKE----ER-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k----~k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+|.++. .+ .|.|..|..|..-...+ ...+.....+|.|+..+|++-|.|.|++|++.||..|+.+|...
T Consensus 48 L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~----~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 48 LTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDD----GVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp EEEECCCSSSCCCCCEEEGGGCCEEEECCCCS----SSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeccCcccccccEEEEeeeEEEEeccccc----cCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence 56776543 12 38888887765543331 22334556899999999999999999999999999999999987
Q ss_pred CCC
Q 001953 77 THS 79 (992)
Q Consensus 77 ~~~ 79 (992)
++.
T Consensus 124 ~~~ 126 (164)
T 2lul_A 124 NNI 126 (164)
T ss_dssp SCC
T ss_pred hhh
Confidence 653
No 30
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=94.80 E-value=0.051 Score=50.05 Aligned_cols=72 Identities=21% Similarity=0.426 Sum_probs=53.3
Q ss_pred eeEeeCCCc----ceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKEE----RQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k~----k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+|...++ ..|.|..+..|...... ...+.......+|.|+-..+++-|.|.+++|++.||..|+..|...
T Consensus 38 L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~---~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 113 (117)
T 1v5u_A 38 LRYYDHRMDTECKGVIDLAEVEAVAPGTPT---IGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG 113 (117)
T ss_dssp EEEESSSSCSSCCCEEEGGGEEEEECCCCC---TTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCCCC
T ss_pred EEEeecCCCCccceEEEccCcEEEeecCcc---ccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHhccC
Confidence 567766542 23999999888765422 1222334556899998889999999999999999999999887653
No 31
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.70 E-value=0.79 Score=55.28 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=38.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEE----EcCCEE-EEEEcCCcEEEEEcCCCCC
Q 001953 478 HDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVA----CGAYHV-AALTSTSKVYTWGKGANGQ 552 (992)
Q Consensus 478 ~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia----~G~~Ht-~aLt~~G~Vy~WG~N~~GQ 552 (992)
..|++++..+|+||+.|....+...........+.... +.......+. .-.+|+ +++..+|+||+.|-+.+|.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd--p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV--PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE--GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc--CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 35777777899999999655443111111001111111 1111222222 123565 5566899999999877653
No 32
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.55 E-value=2.4 Score=51.66 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=33.4
Q ss_pred CcEEEEEEc-CCcEEEEcCCCCCCCccCCC----CCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEec
Q 001953 305 EYHTCAVTR-SGDLYTWGDGTYNSGLLGHG----SKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 305 ~~hs~aLT~-dG~VysWG~n~~~~GqLG~g----~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~ 377 (992)
..|++++.. +|+||.+|-.......+..- .....|.. +. .+. ..-..|++++..+|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~--~~-~~p-------~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM--IK-SLS-------HTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEE--CC-CCS-------BCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEE--CC-CCC-------CCcccceEEEEcCCEEEEECC
Confidence 368888876 99999998542111111100 00111211 11 010 123568888766999999993
No 33
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=94.52 E-value=0.07 Score=50.01 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=50.4
Q ss_pred eeEeeCCCc----ceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 2 LIWYSGKEE----RQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 2 l~w~~~~k~----k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|.+|.+.++ ..|.|..+..|..... .....||.|+..++++-|.|.+.+|++.|+..|+..|...+
T Consensus 46 L~yy~~~~~~~~~g~i~L~~~~~v~~~~~----------~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 115 (126)
T 1fao_A 46 LKYFKDQMSPEPIRILDLTECSAVQFDYS----------QERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIR 115 (126)
T ss_dssp EEEESSTTCSSCSEEEEGGGCCEEEEECS----------SSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred EEEeCCCCCCCceeEEEccceEEEEeccc----------CCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 556655442 2388888877665321 22357999999999999999999999999999999999865
Q ss_pred C
Q 001953 78 H 78 (992)
Q Consensus 78 ~ 78 (992)
.
T Consensus 116 ~ 116 (126)
T 1fao_A 116 K 116 (126)
T ss_dssp -
T ss_pred h
Confidence 4
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.00 E-value=9.5 Score=42.50 Aligned_cols=240 Identities=8% Similarity=0.036 Sum_probs=131.5
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCC
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGT 324 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 324 (992)
.|..++......+.-..||.|..|-....-.+ ..+. .....|..++......+.-..+|.|+.|-...
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEML-----------NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSCCEE-----------EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCCcEE-----------EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCC
Confidence 57778777777777788999999975432110 1111 12346788887777888888999999995442
Q ss_pred CCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCe
Q 001953 325 YNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR 404 (992)
Q Consensus 325 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~ 404 (992)
. .. ......+. .....|..++....+.+.-..+|.|..|-....-. ...+.. ....
T Consensus 243 ~--~~--------~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~~ 298 (435)
T 1p22_A 243 P--TD--------ITLRRVLV--GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNG-HKRG 298 (435)
T ss_dssp S--SC--------CEEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSC
T ss_pred C--CC--------ceeeeEec--CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcC-CCCc
Confidence 1 00 00001111 12345777777667777778899999996432110 011111 1124
Q ss_pred EEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEE
Q 001953 405 TTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVAL 484 (992)
Q Consensus 405 I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaL 484 (992)
|..++......++- ..||.|..|--... ++ ...+. .....|..++....+.+.-
T Consensus 299 v~~~~~~~~~l~~g--------------~~dg~i~iwd~~~~-~~----------~~~~~-~h~~~v~~~~~~~~~l~sg 352 (435)
T 1p22_A 299 IACLQYRDRLVVSG--------------SSDNTIRLWDIECG-AC----------LRVLE-GHEELVRCIRFDNKRIVSG 352 (435)
T ss_dssp EEEEEEETTEEEEE--------------ETTSCEEEEETTTC-CE----------EEEEC-CCSSCEEEEECCSSEEEEE
T ss_pred EEEEEeCCCEEEEE--------------eCCCeEEEEECCCC-CE----------EEEEe-CCcCcEEEEEecCCEEEEE
Confidence 55555543333222 45689999954321 10 01111 1234577777766777777
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCC
Q 001953 485 TTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGA 549 (992)
Q Consensus 485 T~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~ 549 (992)
..+|.|..|-........... ...+.... .-....|..++....+.+.-..||.|..|-...
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPA--GTLCLRTL-VEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCT--TTTEEEEE-CCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred eCCCcEEEEECCCCCCccccc--cchheeec-cCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 889999999743211111000 00111111 112334666776666666667799999996544
No 35
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.50 E-value=0.14 Score=46.82 Aligned_cols=67 Identities=12% Similarity=0.272 Sum_probs=48.8
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|.+|.+.+++ .|.|..+..|..-. .......+|.|+...+++-|.|.+++|++.|+..|+..+...+
T Consensus 36 L~yy~~~~~~~~~g~i~L~~~~~v~~~~---------~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 106 (115)
T 2dn6_A 36 ISYYVSEDLKDKKGDILLDENCCVESLP---------DKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLK 106 (115)
T ss_dssp EEEESSTTCSSEEEEECCCTTCEEEEEC---------CCTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcccCcEEEecCcEEEEECC---------CCCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 5667665422 37777765554321 1123357999988889999999999999999999999998643
No 36
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=93.35 E-value=0.18 Score=46.32 Aligned_cols=60 Identities=15% Similarity=0.346 Sum_probs=48.1
Q ss_pred eeEeeCCCc----ceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEE----RQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~----k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.+|...++ ..|.|..+..|..- +..||.|+-..+++-|.|.+++|++.||..|+..+..
T Consensus 37 L~yy~~~~~~~~~g~i~l~~~~~v~~~--------------~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 37 ISYYNNEKEMYSKGIIPLSAISTVRVQ--------------GDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp EEEEESSCCSSCCCEEETTTEEEEEEE--------------TTTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcccCCEEECCcceEEEeC--------------CCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 566766542 23899888777642 1579999988899999999999999999999999954
No 37
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=93.34 E-value=0.12 Score=48.05 Aligned_cols=70 Identities=11% Similarity=0.265 Sum_probs=51.2
Q ss_pred eeEeeCCCc---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 2 LIWYSGKEE---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 2 l~w~~~~k~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|.+|...++ + .|.|..+..|..-...+ ......||.|+..++.+-|.|.+++|++.|+..|+..|...+
T Consensus 42 L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~-------~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~~ 114 (125)
T 1eaz_A 42 IGYFKSELEKEPLRVIPLKEVHKVQECKQSD-------IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQR 114 (125)
T ss_dssp EEEESSTTCSSCSEEEEGGGCCEEEECTTHH-------HHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCCcceeEEEcccceEEeeccccc-------cCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 566665542 2 38888887665432211 113367999999889999999999999999999999998765
Q ss_pred C
Q 001953 78 H 78 (992)
Q Consensus 78 ~ 78 (992)
.
T Consensus 115 ~ 115 (125)
T 1eaz_A 115 G 115 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 38
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=93.30 E-value=0.14 Score=53.67 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=57.6
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCC
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGT 324 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 324 (992)
.|..|+....|++++--|+++|.+|+++.||+-..... .+..++++|.++++-+..-..+-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 46678888999999999999999999999998764321 25778999999999999999999999876
Q ss_pred C
Q 001953 325 Y 325 (992)
Q Consensus 325 ~ 325 (992)
.
T Consensus 377 D 377 (400)
T 4gbf_A 377 D 377 (400)
T ss_dssp T
T ss_pred C
Confidence 4
No 39
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.16 E-value=0.23 Score=47.10 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=49.9
Q ss_pred eeEeeCCCcc----eeecc-ceeeeccCccCcccccCCCCCCCCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEER----QLKLN-QVSRIIPGQRTATFQRYPRPEKEYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~-~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.||...++. .|.+. ++..|+.|....... .+.......+|.|+. ..+++-|.|.|++|++.||..|+..+..
T Consensus 37 L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~-~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 37 LGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQ-PPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCC-CCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCcCceEecccceeEEeccccccccC-CCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 6777765532 25554 455666665432111 011233458999999 4489999999999999999999999875
Q ss_pred C
Q 001953 76 G 76 (992)
Q Consensus 76 ~ 76 (992)
.
T Consensus 116 ~ 116 (130)
T 2d9v_A 116 P 116 (130)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.03 E-value=0.15 Score=47.56 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred eeEeeCCCc---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 2 LIWYSGKEE---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 2 l~w~~~~k~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|.+|...++ + .|.|..+..|.. ......+|.|+...|++-|.|.|++|++.||..|+..+..-.
T Consensus 40 L~Yy~~~~~~~~~g~I~L~~~~~~~~------------~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 107 (119)
T 2dhk_A 40 LYYSRTAQDANPLDSIDLSSAVFDCK------------ADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFH 107 (119)
T ss_dssp EEEESSTTCCSCSEEEEGGGCEEEEC------------TTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcccccEEECCCCEEEec------------CCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence 566665543 2 288888877652 122346999988999999999999999999999999886543
No 41
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=92.58 E-value=0.29 Score=51.42 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcC
Q 001953 469 ENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 469 ~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N 548 (992)
..|.+|+.-..|++++--++++|.+|++.+||+-.+.. .....++++|..+++-+..-+.|-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 56888888899999999999999999999999866432 12367899999999999999999999986
Q ss_pred CCCC
Q 001953 549 ANGQ 552 (992)
Q Consensus 549 ~~GQ 552 (992)
-...
T Consensus 376 PDNS 379 (400)
T 4gbf_A 376 PDNS 379 (400)
T ss_dssp TTST
T ss_pred CCcc
Confidence 5433
No 42
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=92.50 E-value=0.046 Score=62.34 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=34.0
Q ss_pred cccccccCcCCCCCCCC-CcccccccccCCCceeeccCCC
Q 001953 593 WVSSVDHSVCSSCHNPF-GFRRKRHNCYNCGLVFCKACSS 631 (992)
Q Consensus 593 wv~~~d~s~C~~C~~~F-sf~r~rh~C~~CG~v~C~sCss 631 (992)
|.+......|..|+..| ++.+++|||+.||.++|..|+.
T Consensus 351 ~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 351 MFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp EECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred cccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 34556678899999988 6999999999999999999987
No 43
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=92.34 E-value=0.35 Score=48.31 Aligned_cols=37 Identities=19% Similarity=0.476 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 41 ~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
.+|.|+..++++-|.|.+.+|.+.||..|+..|....
T Consensus 99 ~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~n~ 135 (169)
T 1btk_A 99 YPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNS 135 (169)
T ss_dssp EEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred ccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHCc
Confidence 6999999999999999999999999999999998644
No 44
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=92.20 E-value=0.51 Score=43.06 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=47.3
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEE--------cCCCceeeeCCHHHHHHHHHHH
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY--------NDRSLDLICKDKDEAEVWLVGL 69 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~--------~~~sLdLi~~~~~ea~~W~~gL 69 (992)
|.+|.+.++. .|.|..+.-+..... .......+|.|+. ..+++-|.|.+++|++.||..|
T Consensus 36 L~yy~~~~~~~~~g~i~L~~~~v~~~~~~--------~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al 107 (118)
T 1v89_A 36 LYYYKDEEDTKPQGCMYLPGCTIKEIATN--------PEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFL 107 (118)
T ss_dssp EEEESSSSCCSCSEEECSTTEEEEEECCC--------SSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEEEECCCCEEEEcCcC--------cccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHH
Confidence 5666655421 277776553322111 1123357999999 6789999999999999999999
Q ss_pred HHHHhcCC
Q 001953 70 KALITRGT 77 (992)
Q Consensus 70 ~~l~~~~~ 77 (992)
+..+....
T Consensus 108 ~~~~~~~~ 115 (118)
T 1v89_A 108 RRVAGSGP 115 (118)
T ss_dssp HHHHHCCS
T ss_pred HHHHccCC
Confidence 99998643
No 45
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=91.92 E-value=0.31 Score=44.49 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=48.6
Q ss_pred eeEeeCCCc----ceeeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKEE----RQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k~----k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+|.++++ ..|.|..+..|.... .......||.|+..+ +++-|.|.|++|++.|+..|+..+...
T Consensus 33 L~yy~~~~~~~~~g~i~L~~~~~~~~~~---------~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 33 IEFYKKKSDNSPKGMIPLKGSTLTSPCQ---------DFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EEEESSTTCSSCSEEEESSSCCEESSCC---------SSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcceEEEcCCCEEEEecC---------CCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 556665532 238888877664211 122345799999955 899999999999999999999999864
Q ss_pred C
Q 001953 77 T 77 (992)
Q Consensus 77 ~ 77 (992)
.
T Consensus 104 ~ 104 (113)
T 1pls_A 104 E 104 (113)
T ss_dssp T
T ss_pred c
Confidence 4
No 46
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=91.81 E-value=0.55 Score=43.93 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 001953 39 EYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALITRGTH 78 (992)
Q Consensus 39 ~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~~~~~ 78 (992)
...||.|+.. .+++-|.|.+++|++.||..|+..+...+.
T Consensus 84 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 124 (129)
T 1x05_A 84 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKS 124 (129)
T ss_dssp SCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHccCC
Confidence 4689999994 578999999999999999999999986553
No 47
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=91.52 E-value=0.42 Score=43.35 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=46.8
Q ss_pred eeEeeCCCc----ceeeccceeeeccCccCcccccCCCCCCCCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKEE----RQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k~----k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+|.++++ ..|.|..+..+.... ......||.|+.. .+++-|.|.|++|++.||..|+..+-..
T Consensus 36 L~yyk~~~~~~~~~~i~L~~~~~~~~~~----------~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~ 105 (109)
T 1wgq_A 36 LYTYAASEDVAALESQPLLGFTVTLVKD----------ENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSG 105 (109)
T ss_dssp EEEESCTTCSSCSEEEECSSEEEEECCC----------SSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCcCccCceEECCCCEEEECCC----------CCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 556665442 238888777654322 1123479999995 5789999999999999999999887653
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=91.38 E-value=0.37 Score=43.20 Aligned_cols=67 Identities=18% Similarity=0.371 Sum_probs=46.4
Q ss_pred eeEeeCCCc---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEE---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.+|.+.++ + .|.|..+.-+..-. .........||.|+..+ +++-|.|.|.+|++.|+..|+..|..
T Consensus 35 L~yy~~~~~~~~~g~i~L~~~~v~~~~~-------~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 35 FYYYANEKSKQPKGTFLIKGYSVRMAPH-------LRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEESSTTCSSCSEEEECTTCEEEECGG-------GCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCEEEEecceEEEeCCc-------cccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 566666542 2 27887776332110 01112335899999966 99999999999999999999998864
No 49
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=91.22 E-value=0.41 Score=46.20 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=47.9
Q ss_pred eeEeeCCC-c---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKE-E---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k-~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.||...+ + + .|.|..+..|... +.....||.|+..+ +++-|.|.+++|++.||..|+.+|..
T Consensus 57 L~yy~~~~~~~~~~g~I~L~~~~~~~~~-----------~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~ 125 (150)
T 1wg7_A 57 LNFYKDEKISKEPKGSIFLDSCMGVVQN-----------NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQL 125 (150)
T ss_dssp EEEESSSCCSSCCSEEECTTTCCEECCC-----------CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCcCcEEecccCEEEecC-----------CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56676654 2 1 2788877665431 23446899999964 89999999999999999999999874
Q ss_pred C
Q 001953 76 G 76 (992)
Q Consensus 76 ~ 76 (992)
.
T Consensus 126 ~ 126 (150)
T 1wg7_A 126 N 126 (150)
T ss_dssp H
T ss_pred h
Confidence 3
No 50
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.61 E-value=0.34 Score=44.99 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
...+|.|+..+ +++-|.|.+++|++.||..|+..|....
T Consensus 68 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 107 (120)
T 2d9x_A 68 DSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHT 107 (120)
T ss_dssp SSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 45899999965 9999999999999999999999987644
No 51
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=89.82 E-value=0.44 Score=49.90 Aligned_cols=62 Identities=19% Similarity=0.479 Sum_probs=48.9
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.+|.+.+++ .|.|..+..|.... ....+|.|+...+++-|.|.|++|++.||..|+..|..
T Consensus 91 L~Yyk~~~~~~~~g~I~L~~~~~v~~~~------------~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 91 LMYFENDSEEKLKGTVEVRSAKEIIDNT------------NKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp EEEESSTTCCSEEEEEEGGGCSEEEEET------------TTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCcceeEEEEcCCCEEeccCC------------CCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 5667665532 38888887665322 23579999889999999999999999999999999974
No 52
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.56 E-value=12 Score=45.31 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=14.9
Q ss_pred cceeEEEec-CCeEEEEec
Q 001953 360 LWHTAVVTS-AGHLFTFGD 377 (992)
Q Consensus 360 ~~hs~aLT~-dG~Vy~wG~ 377 (992)
..|++++.. +|+||.+|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 468888876 899999993
No 53
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=89.34 E-value=0.85 Score=42.21 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=25.5
Q ss_pred CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 50 RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 50 ~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
+++-|.|.+++|++.||..|+..|....
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 123 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISRDP 123 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 6899999999999999999999998643
No 54
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=89.19 E-value=0.21 Score=48.14 Aligned_cols=56 Identities=20% Similarity=0.498 Sum_probs=44.1
Q ss_pred cccCcCCCCCCCCCcc-cccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 597 VDHSVCSSCHNPFGFR-RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~-r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
.+...|..|..+|+|. ...+-|..|...+|..|...-. ....++.++|..|+..-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~------~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS------NNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC------CSSSSCCEEEHHHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccC------CCCCccceechhhHHHHH
Confidence 3567899999999854 5678999999999999986321 125688999999997644
No 55
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=88.55 E-value=0.2 Score=49.42 Aligned_cols=51 Identities=27% Similarity=0.772 Sum_probs=41.8
Q ss_pred ccCcCCCCCCCCCcc-cccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFR-RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~-r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|..+|+|. ...+-|..|...+|..|... .+..+.++|..|+..-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---------~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---------CSSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc---------cCCCCcEeeHHHHHHH
Confidence 467899999999855 56788999999999999841 1357899999999763
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=88.17 E-value=36 Score=37.73 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=132.3
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeec--CCCcEEEEEecCcEEEEEEcCCcEEEEcC
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEIL--SGVNVELVACGEYHTCAVTRSGDLYTWGD 322 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 322 (992)
.|..++......+.-..||.|+.|-.... ..+..+ ....|..++......+....||.|+.|-.
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETG--------------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcC--------------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence 46667666777778888999999965321 111111 23357777777778888889999999964
Q ss_pred CCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeecc-
Q 001953 323 GTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR- 401 (992)
Q Consensus 323 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~- 401 (992)
.. +. ....+. .....|..++......+.-+.+|.|+.|-... ...+..+.
T Consensus 227 ~~---~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~ 277 (445)
T 2ovr_B 227 ET---GQ----------CLHVLM--GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQG 277 (445)
T ss_dssp SS---CC----------EEEEEE--CCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECC
T ss_pred CC---Cc----------EEEEEc--CCcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecC
Confidence 42 11 001111 12335667776666777778899999996322 11222221
Q ss_pred -CCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcE
Q 001953 402 -GLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDL 480 (992)
Q Consensus 402 -~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~h 480 (992)
...|..++....+.+.- ..||.|+.|-...... ...+. .....+..+......
T Consensus 278 ~~~~v~~~~~~~~~l~~~--------------~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~ 331 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSG--------------SLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNI 331 (445)
T ss_dssp CSSCEEEEEECSSEEEEE--------------ETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTE
T ss_pred CCCceEEEEECCCEEEEE--------------eCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCE
Confidence 12466666643333322 4568999995433110 01111 122345666666667
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecC-CcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcC
Q 001953 481 SVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDG-EIAESFVEEVACGAYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 481 tvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~-~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N 548 (992)
.+.-..+|.|+.|-... |+ ....+.. ......|..++....+.++-..+|.|+.|-..
T Consensus 332 l~~~~~dg~i~vwd~~~-~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKT-GQ---------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEEEETTSCEEEEETTT-CC---------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred EEEEeCCCeEEEEECCC-Cc---------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 77778899999997532 11 1111211 11335588888877777777889999999654
No 57
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.00 E-value=0.98 Score=41.17 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...+|.|+. ..+++-|.|.+++|++.||..|+..+..
T Consensus 73 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 73 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 347999998 5689999999999999999999988754
No 58
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=87.56 E-value=0.69 Score=43.33 Aligned_cols=61 Identities=18% Similarity=0.404 Sum_probs=46.2
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEc------CCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN------DRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 12 ~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~------~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
.|+|+.+..|+.=.+.++..-..... .+.|.|+|. .++|-|.|.|.+|.+.||..|+..|.
T Consensus 49 ~Idl~~~~~V~~V~~~d~i~~~~~~~--p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 49 VLDIDKLFHVRPVTQTDVYRADAKEI--PRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EECGGGEEEEEECCTTTCSSSCTTTG--GGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEECcccEEEEEcccccccccccccC--CcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 38888777777666665554432222 378999994 37999999999999999999998774
No 59
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=87.22 E-value=1.3 Score=39.86 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
...+|.|+..+ +++-|.|.|++|++.|+..|+..+
T Consensus 73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 46899999954 679999999999999999999876
No 60
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=87.21 E-value=1.1 Score=43.74 Aligned_cols=65 Identities=17% Similarity=0.361 Sum_probs=46.6
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.||...+++ .|.|..+..+.. ..+. .....+|.|+..++++-|.|.|.+|++.||..|+.++..
T Consensus 46 L~Yyk~~~d~~~~g~I~L~~~~~~~~--------~~~~-~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~~ 114 (149)
T 1x1f_A 46 LFFYTDKKSIIYVDKLDIVDLTCLTE--------QNST-EKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL 114 (149)
T ss_dssp EEEESCSSCSSCSEECCCSSCCEEEE--------CCCT-TSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccccCcEEECCCceEEee--------ccCC-CCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence 5677666532 267776654311 0111 123579999999999999999999999999999999874
No 61
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=87.04 E-value=1.2 Score=42.16 Aligned_cols=62 Identities=27% Similarity=0.666 Sum_probs=43.3
Q ss_pred CeeEeeCCCcc--e--eecccee--eeccCccCcccccCCCCCCCCceEEEEEcC--------CCceeeeCCHHHHHHHH
Q 001953 1 MLIWYSGKEER--Q--LKLNQVS--RIIPGQRTATFQRYPRPEKEYQSFSLIYND--------RSLDLICKDKDEAEVWL 66 (992)
Q Consensus 1 ~l~w~~~~k~k--~--~~~~~v~--~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~--------~sLdLi~~~~~ea~~W~ 66 (992)
+|.||....|| . |.|..+. +|-.| | ...-.||-|++.+ ++++|.|.+.+|.+-|+
T Consensus 41 ~L~yyKd~~eke~~G~IpL~~~~vr~v~~~-----~------~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi 109 (125)
T 1dyn_A 41 NLSWYKDDEEKEKKYMLSVDNLKLRDVEKG-----F------MSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWK 109 (125)
T ss_dssp EEEEESSTTCSCEEEEEECTTEEEEECCSC-----S------SSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHH
T ss_pred ceeeecCCcccccceEEECCCceEeccCCC-----C------CCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHH
Confidence 57899886644 3 7777553 33222 1 1235799999832 49999999999999999
Q ss_pred HHH-HHHH
Q 001953 67 VGL-KALI 73 (992)
Q Consensus 67 ~gL-~~l~ 73 (992)
..+ |+=|
T Consensus 110 ~s~~ra~v 117 (125)
T 1dyn_A 110 ASFLRAGV 117 (125)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCcc
Confidence 988 6533
No 62
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.02 E-value=1.3 Score=40.78 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 39 ~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
...||.|+. ..+++-|.|.+++|++.|+..|+..+
T Consensus 84 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 84 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp SSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 357999988 56899999999999999999999876
No 63
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=86.41 E-value=2 Score=39.48 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...||.|+.. .+++-|.|.+++|++.||..|+..+..
T Consensus 73 ~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 73 RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp SSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred CcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3578999884 499999999999999999999999864
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=86.38 E-value=44 Score=36.93 Aligned_cols=229 Identities=10% Similarity=0.051 Sum_probs=134.1
Q ss_pred CEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCC
Q 001953 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGT 324 (992)
Q Consensus 245 ~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 324 (992)
.|..++..+.+.+.-..||.|+.|-....-. ...+. .....|..++......+.-..||.|..|-..+
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----------KRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----------EEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 4777777788888889999999996432110 01111 12336777777667777778899999996542
Q ss_pred CCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCe
Q 001953 325 YNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR 404 (992)
Q Consensus 325 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~ 404 (992)
+.+ ...+. .....|..++......+.-..+|.|+.|-......+ .+.....-....
T Consensus 203 ---~~~----------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 203 ---GEM----------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp ---CCE----------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred ---CcE----------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 110 01111 123457777777777777788999999964321111 000111111224
Q ss_pred EEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEE
Q 001953 405 TTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVAL 484 (992)
Q Consensus 405 I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaL 484 (992)
|..++....+.++. ..||.|..|-...... ...+. .....|..++......+.-
T Consensus 259 v~~~~~~~~~l~s~--------------~~dg~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~g 312 (435)
T 1p22_A 259 VNVVDFDDKYIVSA--------------SGDRTIKVWNTSTCEF-----------VRTLN-GHKRGIACLQYRDRLVVSG 312 (435)
T ss_dssp EEEEEEETTEEEEE--------------ETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEEETTEEEEE
T ss_pred EEEEEeCCCEEEEE--------------eCCCeEEEEECCcCcE-----------EEEEc-CCCCcEEEEEeCCCEEEEE
Confidence 66666543333332 4569999995432110 11111 1234566777667777777
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEc
Q 001953 485 TTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGK 547 (992)
Q Consensus 485 T~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~ 547 (992)
..+|.|..|-... |+ ....+. .....|..|+....+.+.-..+|.|..|-.
T Consensus 313 ~~dg~i~iwd~~~-~~---------~~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 313 SSDNTIRLWDIEC-GA---------CLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ETTSCEEEEETTT-CC---------EEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred eCCCeEEEEECCC-CC---------EEEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 8899999997543 11 111111 123457888887777777788999999965
No 65
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=85.73 E-value=1.1 Score=43.14 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=45.6
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+|.+.+++ .|.|..+.-+.. ... ........||.|+..+ +++-|.|.+.+|++.||..|+..|...
T Consensus 49 L~yyk~~~~~~~~g~i~L~~~~v~~~-~~~------~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 121 (148)
T 1u5f_A 49 FYYYGSDKDKQQKGEFAIDGYDVRMN-NTL------RKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDL 121 (148)
T ss_dssp EEEESSTTCSSCSEEEECTTCEEEEC-TTS------CSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred EEEEcCCCCcccceEEEcCCcEEEEC-CCc------ccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 5666655421 278877753321 100 0112234899999955 899999999999999999999999765
Q ss_pred CC
Q 001953 77 TH 78 (992)
Q Consensus 77 ~~ 78 (992)
+.
T Consensus 122 ~~ 123 (148)
T 1u5f_A 122 GS 123 (148)
T ss_dssp --
T ss_pred cC
Confidence 43
No 66
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=85.61 E-value=0.83 Score=42.91 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 38 KEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 38 ~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
....||.|+..+ +++-|.|.|++|++.||..|+..|..
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 456899999966 89999999999999999999998864
No 67
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=85.60 E-value=1.2 Score=40.32 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...||.|+.. .+++-|.|.|++|++.||..|+..+..
T Consensus 65 ~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 65 HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp BSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 3579999995 789999999999999999999987653
No 68
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=85.26 E-value=0.85 Score=48.96 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=42.7
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
|.|..+..|.... ......+|.|+..++++-|.|.|++|++.||..|+.++...+
T Consensus 61 I~L~~~~~V~~~~----------~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~k 115 (264)
T 1qqg_A 61 IPLESCFNINKRA----------DSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAK 115 (264)
T ss_dssp EEGGGEEEEEEEC----------CSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC----
T ss_pred EEeeceEEEEecc----------CCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence 8998887764321 133457999999999999999999999999999999998754
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=85.11 E-value=48 Score=36.17 Aligned_cols=139 Identities=9% Similarity=0.034 Sum_probs=76.9
Q ss_pred eeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEe--CCcEEEEEEcCCcEEEEeC
Q 001953 193 AHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIAC--GARHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 193 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~--G~~hs~~Lt~dG~Vy~WG~ 270 (992)
...+...+|.|++|-... |.+ ...+.......|..|+. .+.+.++-..+|.|+.|-.
T Consensus 105 ~l~~~~~d~~v~lw~~~~--~~~-------------------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 105 NVVAVALERNVYVWNADS--GSV-------------------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp SEEEEEETTEEEEEETTT--CCE-------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEECCCeEEEeeCCC--CcE-------------------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 344566889999997754 211 01111111234555654 3456666678999999965
Q ss_pred CCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCC
Q 001953 271 ESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDG 350 (992)
Q Consensus 271 N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~ 350 (992)
..... ...+. .....|..++......+....+|.|+.|-.... +. ....+. ...
T Consensus 164 ~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~----------~~~~~~--~~~ 217 (401)
T 4aez_A 164 ESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIA--NH----------QIGTLQ--GHS 217 (401)
T ss_dssp TTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSS--SC----------EEEEEE--CCS
T ss_pred cCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccC--cc----------eeeEEc--CCC
Confidence 43211 11111 123467777777777788888999999965411 10 011111 122
Q ss_pred CcEEEEEECc--ceeEEEecCCeEEEEecC
Q 001953 351 IHLSYISCGL--WHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 351 ~~Iv~VacG~--~hs~aLT~dG~Vy~wG~n 378 (992)
..|..++.-. .+.+.-+.+|.|+.|-..
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 3466665532 344555678899999643
No 70
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=84.93 E-value=2.1 Score=39.71 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 39 EYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 39 ~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
...||.|+.. .+++-|.|.+++|++.||..|+..+.
T Consensus 83 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 3579999995 59999999999999999999987664
No 71
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=84.84 E-value=0.85 Score=41.44 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=31.7
Q ss_pred CceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 40 YQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 40 ~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+|.|+. ..+++-|.|.|++|++.||..|+..++
T Consensus 76 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 76 DCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp GGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 46999998 579999999999999999999998765
No 72
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=84.54 E-value=2.2 Score=34.10 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
.|.+|-+||..|..|-.++..++..++-.+ ..|++||+|..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v----~~ak~eA~RAN 45 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDA----QAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344555555555555555555666555433 37888888643
No 73
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=84.27 E-value=2.2 Score=40.54 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=42.5
Q ss_pred eeEeeCCCcc----eeeccceeeeccCccCcccccCCCCCCCCceEEEEE-cC-----------------------CCce
Q 001953 2 LIWYSGKEER----QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY-ND-----------------------RSLD 53 (992)
Q Consensus 2 l~w~~~~k~k----~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~-~~-----------------------~sLd 53 (992)
|.+|.+.+++ .|.|.... |++ ....++..||.|+. .+ +.+-
T Consensus 35 L~yyk~~~~~~p~G~I~L~~~~-v~~----------~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~ 103 (130)
T 1v88_A 35 LLIYKTQKNGQWVGTVLLNACE-IIE----------RPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLI 103 (130)
T ss_dssp EEEESCSSSCCCCEEEECSSCE-ECC----------CCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCE
T ss_pred EEEECCCCCCCceEEEEcCCCE-EEE----------CCCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEE
Confidence 6677666533 27776553 211 01123348999997 22 2377
Q ss_pred eeeCCHHHHHHHHHHHHHHHhc
Q 001953 54 LICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 54 Li~~~~~ea~~W~~gL~~l~~~ 75 (992)
|-|.+++|++.||..|+..+..
T Consensus 104 f~A~s~~e~~~Wi~ai~~a~~~ 125 (130)
T 1v88_A 104 IRATSESDGRCWMDALELALKS 125 (130)
T ss_dssp EECSSHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998864
No 74
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=84.19 E-value=0.62 Score=41.66 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 39 ~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
+..+|.|+. +.+++-|.|.|++|++.||..|+..++...
T Consensus 57 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 96 (103)
T 3rcp_A 57 DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLT 96 (103)
T ss_dssp CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCCCC
T ss_pred CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 467999999 589999999999999999999998776543
No 75
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.03 E-value=74 Score=40.52 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec-CcEEEEEEcCCcEEEEcCC
Q 001953 252 GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG-EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 252 G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-~~hs~aLT~dG~VysWG~n 323 (992)
.+.+.+....||.|+.|-....-.+ .+. .....|..++.. ....++...+|.|+.|-..
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 3445556667899999975432111 000 112245555433 3455666788999999654
No 76
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.85 E-value=8.9 Score=34.88 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=49.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
+.+......++++..++..+|.+|..+....+.++.+++.++++|...+.+.-.+.-.|-.-+.+|+-.+.
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666667777778888888888888888888888888875554443333446667888887543
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.40 E-value=11 Score=34.08 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=47.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK--------CKTANEVIKSLTVQLKK 867 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ake~iksLt~qlk~ 867 (992)
+.|...+.....|+.+|+.++..-+.++..-+.+..+..+.+++.++-+-+||-| +-+++.=.+.|.+||+|
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666777777666666666666677777777777766666655543 33445566778888887
Q ss_pred H
Q 001953 868 M 868 (992)
Q Consensus 868 ~ 868 (992)
.
T Consensus 95 ~ 95 (97)
T 2eqb_B 95 K 95 (97)
T ss_dssp H
T ss_pred c
Confidence 4
No 78
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.02 E-value=52 Score=35.00 Aligned_cols=231 Identities=12% Similarity=0.043 Sum_probs=123.1
Q ss_pred EEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEE--ecCcEEEEEEcCCcEEEEcCCCCCCCccCC
Q 001953 255 HAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVA--CGEYHTCAVTRSGDLYTWGDGTYNSGLLGH 332 (992)
Q Consensus 255 hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va--~G~~hs~aLT~dG~VysWG~n~~~~GqLG~ 332 (992)
=+++|+++|=|-.-. ||.. .+..+..+. ....+.+++|+.|++|.---. .+-.
T Consensus 3 vtvils~~Gwir~~~-------g~~~-------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-----~lp~ 57 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL-------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-----QALQ 57 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS-------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSH-----HHHT
T ss_pred EEEEEcCCceeeecc-------CCCC-------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-----hCcc
Confidence 367888888554321 2321 333444443 334578999999999976322 1100
Q ss_pred CCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEE
Q 001953 333 GSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVS 409 (992)
Q Consensus 333 g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va 409 (992)
..... + ..++++|+.|.+- ..+.+++|.+|.+.-.-..++-+-..| ...+..-.+..++.+.
T Consensus 58 ~~~~~------l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G-------~~~i~lkegD~l~~~~ 122 (276)
T 3no0_A 58 GSKVS------L--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQG-------MPIIKLTEGDEVVSIA 122 (276)
T ss_dssp SEECC------C--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTT-------EECSCCCTTCCEEEEE
T ss_pred Ccccc------c--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC-------eEEEecCCCCEEEEEE
Confidence 00000 2 3457789888762 246888999999988875554311000 0111111233444443
Q ss_pred e--CCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeec--CcEEEEEe
Q 001953 410 C--GVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACG--HDLSVALT 485 (992)
Q Consensus 410 c--G~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htvaLT 485 (992)
. +..+.+++ |++|++|.+-..+.-.+|.+...... +....+..|+.+... ....+++|
T Consensus 123 ~~~~~~~ill~--------------T~~G~~~r~~~~eip~~gR~a~Gv~~----i~L~~~d~vv~~~~~~~~~~ll~~T 184 (276)
T 3no0_A 123 SSVDETHILLF--------------TKKGRVARFSVREVPPSTPGARGVQG----IKLEKNDETSGLRIWNGEPYLLVIT 184 (276)
T ss_dssp ECCSSCEEEEE--------------ETTSEEEEEEGGGSCBCCTTCCCEEC----CCCCTTCCEEEEEEESSCSEEEEEE
T ss_pred EeCCCCEEEEE--------------ECCCEEEEEEhhhCCCcCCCCCCEEE----EccCCCCEEEEEEEeCCCCEEEEEe
Confidence 3 33344444 77799999865554444433222111 121234566665443 34678889
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEE--EcCCEEEEEEcCCcEEE--EEcCC
Q 001953 486 TSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVA--CGAYHVAALTSTSKVYT--WGKGA 549 (992)
Q Consensus 486 ~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia--~G~~Ht~aLt~~G~Vy~--WG~N~ 549 (992)
++|.+.-.--.++-..+.+..- -..+ ..+..++.+. -+....+++|++|.+.- +-.+.
T Consensus 185 ~~G~~kr~~~~e~~~~~R~gkG---v~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 185 AKGRVKKISHEEIPKTNRGVKG---TEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp TTSCEEEEEGGGSCCCCTTCCC---EECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCcEEEeEHHHcccCCCCCcc---eEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9998887776655433321100 0001 1223344443 24567889999999988 64443
No 79
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=82.59 E-value=3.3 Score=33.05 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
-|.|--.+|-++|+.|+.+|.++|.||+++.+-+++-
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455556777899999999999999999999887753
No 80
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=81.97 E-value=2.3 Score=43.89 Aligned_cols=67 Identities=13% Similarity=0.326 Sum_probs=47.8
Q ss_pred eeEeeCCCc---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEc-CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 2 LIWYSGKEE---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN-DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 2 l~w~~~~k~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~-~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|.+|...++ + .|.|..+..|..-.. ........||.|+.. .+++-|.|.+++|++.||..|+..|..
T Consensus 138 L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~-------~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 138 FYYYGSDKDKQQKGEFAIDGYDVRMNNTL-------RKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEESSTTCSSCSEEEECTTCEEEECGGG-------CSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCccceEEEEeCCcEEEEcCCc-------cccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 566766542 2 388888776542110 011223479999995 499999999999999999999999875
No 81
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.48 E-value=60 Score=34.57 Aligned_cols=207 Identities=10% Similarity=0.050 Sum_probs=108.9
Q ss_pred CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec---CcEEEEEEcCCcEEEEcCCCCCCCc
Q 001953 253 ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG---EYHTCAVTRSGDLYTWGDGTYNSGL 329 (992)
Q Consensus 253 ~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG~VysWG~n~~~~Gq 329 (992)
..+.+++|++|++|.---...-. +... . + ..++.+|..|.+- +...+++|.+|.+.-.-...|. +
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~-~~~~--~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~--~ 102 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQ-GSKV--S------L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE--Y 102 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHT-SEEC--C------C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT--T
T ss_pred CCEEEEEcCCCeEEEEEhhhCcc-Cccc--c------c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh--h
Confidence 45688999999999865321100 0000 0 2 2356788888662 3578999999998877544331 1
Q ss_pred cCCCCCccccccceeccCCCCCcEEEEEE--CcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEE
Q 001953 330 LGHGSKVSCWIPRKVSGNLDGIHLSYISC--GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTR 407 (992)
Q Consensus 330 LG~g~~~~~~~P~~v~~~l~~~~Iv~Vac--G~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~ 407 (992)
-. . ........++..++.+.. +..+.+++|++|++|.+-....-.+|.+..-.. .+..-.+.+|+.
T Consensus 103 ~~-----~---G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~ 170 (276)
T 3no0_A 103 KA-----Q---GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSG 170 (276)
T ss_dssp CS-----T---TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEE
T ss_pred hc-----C---CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEE
Confidence 00 0 111111223445665543 455689999999999997655444443221110 111123445665
Q ss_pred EEeCC-ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEe--ecCcEEEEE
Q 001953 408 VSCGV-WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVA--CGHDLSVAL 484 (992)
Q Consensus 408 VacG~-~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia--~G~~htvaL 484 (992)
+.... ...++++ |++|.+.-.--.++-..+.+....... ..+..++.+. .+....+++
T Consensus 171 ~~~~~~~~~ll~~-------------T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 171 LRIWNGEPYLLVI-------------TAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp EEEESSCSEEEEE-------------ETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEE
T ss_pred EEEeCCCCEEEEE-------------eCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEE
Confidence 54433 2223332 555777666544443222221111111 1223344332 356688899
Q ss_pred eCCCcEEE--EeCCCCCCCC
Q 001953 485 TTSGHVYT--MGSAAYGQLG 502 (992)
Q Consensus 485 T~dG~Vy~--wG~N~~GQLG 502 (992)
|++|.+.. +-.++.-.+|
T Consensus 232 t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBCC
T ss_pred cCCCeEEEeeeCHHHCCCcC
Confidence 99999988 7655544444
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.32 E-value=6.1 Score=46.83 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=46.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEEL-------TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+.+.+..+.+.+++++++.+.+.+ ++..+++.+++++.++++.+.-....++-++-+..|+-+-.+++|||++
T Consensus 498 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 498 DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544444 4444444444454445555555555566666666677777788899999
Q ss_pred hhcCCCC
Q 001953 869 AEKSPEG 875 (992)
Q Consensus 869 ~e~lp~~ 875 (992)
-++++.-
T Consensus 578 ~~~~~~~ 584 (597)
T 3oja_B 578 EAKKNRN 584 (597)
T ss_dssp HHTTC--
T ss_pred HHHhcCC
Confidence 9998763
No 83
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=80.18 E-value=0.89 Score=39.99 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 39 ~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
...+|.|+-+.+++-|.|.|++|++.||..|+.
T Consensus 59 ~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~ 91 (94)
T 2rsg_A 59 DECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQ 91 (94)
T ss_dssp CSSEEEEEETTEEEEEECCSSCCTHHHHHHHHH
T ss_pred cceeEEEEeCCeEEEEECCCHHHHHHHHHHHHh
Confidence 457999999999999999999999999999875
No 84
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=80.00 E-value=1.2 Score=41.52 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
...||.|+..+ +++-|.|.+++|++.||..|+..+.+.
T Consensus 88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 126 (129)
T 1x1g_A 88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSGP 126 (129)
T ss_dssp CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSSS
T ss_pred CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 45799999965 789999999999999999999998653
No 85
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.80 E-value=1.3 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 40 ~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
..||.|+-..+++-|.|.|++|++.||..|+..|....
T Consensus 67 ~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 67 KKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp SSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 35999999889999999999999999999999887643
No 86
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=79.18 E-value=3.1 Score=38.15 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 38 KEYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 38 ~~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
....||.|+. ..+++=|-|.|++|++.||..|+..++...
T Consensus 64 ~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~~~ 104 (112)
T 3cxb_B 64 DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGV 104 (112)
T ss_dssp SCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTCC-
T ss_pred CCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhccc
Confidence 4467999999 457999999999999999999999987643
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=79.18 E-value=5.6 Score=45.98 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLK----------TVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
..+|..|-.+-+++..+.+...++..+..|+|. ++.+.+++-.++.|+.++-++.|.++|.++..+||--
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555444444 4455566666666666666667777777777776643
No 88
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=79.07 E-value=22 Score=42.46 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.5
Q ss_pred cEEEEEEcCCcEEEEeC
Q 001953 254 RHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 254 ~hs~~Lt~dG~Vy~WG~ 270 (992)
.|++++..+|+||++|-
T Consensus 289 ~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 289 YQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECC
T ss_pred ccceEEecCCeEEEEeC
Confidence 57777777999999996
No 89
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.01 E-value=16 Score=34.27 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=53.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSE-------HLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV---- 863 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~---- 863 (992)
++.+...|..|.-|+.+++..++.++.|.+ .-+.++..++|.+.+++..=.+--.|..+-+|-|-+|..
T Consensus 29 id~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~hee 108 (119)
T 3ol1_A 29 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666677777777777776654 345677888889988886666666788888888888764
Q ss_pred HHHHHhhc
Q 001953 864 QLKKMAEK 871 (992)
Q Consensus 864 qlk~~~e~ 871 (992)
++++|-.+
T Consensus 109 El~eLq~q 116 (119)
T 3ol1_A 109 EIQELQAQ 116 (119)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 56665443
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.62 E-value=80 Score=34.33 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=64.7
Q ss_pred EEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec--CcEEEEEEcCCcEEEEcCC
Q 001953 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG--EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 246 I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysWG~n 323 (992)
+..++-...+.++...+|.|+.|-....- ....+.......|..|+.. ..+.++-+.+|.|+.|-..
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 44466566778888999999999754321 1111222124456666653 3455666679999999644
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecC
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n 378 (992)
. +. ....+. .....|..++......+.-..+|.|+.|-..
T Consensus 165 ~---~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 165 S---QT----------KLRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp T---CC----------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred C---Ce----------EEEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 2 10 011111 2234577777766677777889999999743
No 91
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=78.53 E-value=34 Score=36.86 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.2
Q ss_pred cceeEEEecCCeEEEEec
Q 001953 360 LWHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 360 ~~hs~aLT~dG~Vy~wG~ 377 (992)
..|++++ .+|+||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4576666 7889999993
No 92
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.95 E-value=6.9 Score=45.44 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSK---QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
-.+++.++++|+.+-...+.+|.++++ .++++.+.+++-.++.++.++-++.|.++|.++..+||-
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333344444444444444444433322 234455566666666777777777777778777777664
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=77.80 E-value=8.9 Score=44.78 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSK-----------QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
|.++-.+++.++++|+.+-...+.+|.+.++ .++++.+.+++-.++.|+.++-.+.+.++|.++..+||
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555555554332 23344555555555666666666666667777777766
Q ss_pred CC
Q 001953 874 EG 875 (992)
Q Consensus 874 ~~ 875 (992)
--
T Consensus 155 N~ 156 (501)
T 1wle_A 155 NQ 156 (501)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=77.53 E-value=90 Score=34.35 Aligned_cols=226 Identities=8% Similarity=-0.036 Sum_probs=129.0
Q ss_pred EEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCC
Q 001953 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTY 325 (992)
Q Consensus 246 I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~ 325 (992)
+..++..+...+.-..||.|+.|-....-.+ ..+. .....|..++......+.-..||.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~- 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAET- 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCc-
Confidence 4456666677777888999999975432111 0111 11235666766677777788899999996442
Q ss_pred CCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeE
Q 001953 326 NSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRT 405 (992)
Q Consensus 326 ~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I 405 (992)
+. ....+. .....|..++......+.-+.+|.|+.|-...... ...+.. ....|
T Consensus 189 --~~----------~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~~-~~~~v 242 (445)
T 2ovr_B 189 --GE----------CIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLMG-HVAAV 242 (445)
T ss_dssp --TE----------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEEC-CSSCE
T ss_pred --Cc----------EEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEcC-CcccE
Confidence 11 011111 12335777776667777778899999996432110 001111 12245
Q ss_pred EEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEe
Q 001953 406 TRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALT 485 (992)
Q Consensus 406 ~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT 485 (992)
..++......++. ..+|.|+.|-.... .+..........|..+.....+.+.-.
T Consensus 243 ~~~~~~~~~l~~~--------------~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~ 296 (445)
T 2ovr_B 243 RCVQYDGRRVVSG--------------AYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGS 296 (445)
T ss_dssp EEEEECSSCEEEE--------------ETTSCEEEEEGGGT------------EEEEEECCCSSCEEEEEECSSEEEEEE
T ss_pred EEEEECCCEEEEE--------------cCCCEEEEEECCCC------------cEeEEecCCCCceEEEEECCCEEEEEe
Confidence 5555533332222 45689999853221 011111112345777777667777778
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcC
Q 001953 486 TSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 486 ~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N 548 (992)
.+|.|+.|-.... + ....+. .....+..++......++-..+|.|+.|-..
T Consensus 297 ~d~~i~i~d~~~~-~---------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 297 LDTSIRVWDVETG-N---------CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp TTSCEEEEETTTC-C---------EEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEECCCC-C---------EEEEEc--CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 8999999975431 1 111111 1234567777777777777889999999653
No 95
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.49 E-value=9.6 Score=40.43 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=42.0
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
++.+++....|+.++..+..+++.+....+....++...++.+.++.+...++.+ ..++-+..|.++-.+++..+|+
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~---e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK---NIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCH
Confidence 3444444444444444444444444444444444444444444444433333332 2234566777888888889988
Q ss_pred CC
Q 001953 875 GA 876 (992)
Q Consensus 875 ~~ 876 (992)
..
T Consensus 176 ~l 177 (256)
T 3na7_A 176 KI 177 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 96
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=77.14 E-value=85 Score=33.86 Aligned_cols=71 Identities=7% Similarity=-0.173 Sum_probs=40.1
Q ss_pred CCeEEEeecCc---EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEE-EcCCcEEE
Q 001953 469 ENICQVACGHD---LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAAL-TSTSKVYT 544 (992)
Q Consensus 469 ~~I~~Ia~G~~---htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aL-t~~G~Vy~ 544 (992)
..|..++.... +.+.-..+|.|+.|-.....+ |...........|..+.......++. ..||.|+.
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence 45666655433 566667889999997543211 11111111234566666665554444 46889999
Q ss_pred EEcCC
Q 001953 545 WGKGA 549 (992)
Q Consensus 545 WG~N~ 549 (992)
|-...
T Consensus 361 w~~~~ 365 (420)
T 3vl1_A 361 DIISD 365 (420)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 97654
No 97
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=75.61 E-value=2.4 Score=39.71 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=30.8
Q ss_pred CceEEEEEc---CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 40 YQSFSLIYN---DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 40 ~~~fs~i~~---~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
..+|.|.+. .+.+.|.|.+.+|++.||..|+..+..
T Consensus 82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 359999993 478999999999999999999988754
No 98
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=75.54 E-value=4.7 Score=37.97 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=40.8
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 13 ~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
|.|..+..|......+ ......||.|.-+.|+.=|.|.|++|.+.||..|+..+.
T Consensus 66 I~L~~~~~V~~~~~~~-------~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 66 LQLTYISKVSIATPKQ-------KPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp EETTTCCEEEECCTTT-------SCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred EECCCccEEecCCccc-------CCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 8888887776654211 113357894443889999999999999999999997654
No 99
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=75.00 E-value=3.2 Score=38.33 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=35.4
Q ss_pred CCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 001953 38 KEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRGTH 78 (992)
Q Consensus 38 ~~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~~~ 78 (992)
....||.|+..+ +++=|-|.|++|++.||..|+..+...+.
T Consensus 80 ~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 80 KRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp SCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 346899999855 88999999999999999999999987553
No 100
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.98 E-value=19 Score=35.36 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=57.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
-++.+.+..+|..|..+++++..+++.-+..++++++.|..+-.-+..+-.|.++..+-+...-++|..|..
T Consensus 69 sqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355677888888888888888888888888888888888888877777788888888887777777776643
No 101
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.90 E-value=6.7 Score=45.81 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=59.7
Q ss_pred ccchHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhHHHHH
Q 001953 795 IDDSKQMNDS----LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA-----------EDEAEKCKTANEVIK 859 (992)
Q Consensus 795 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ake~ik 859 (992)
...|++++-. +..+|..|-.+-++|..+.+...++..+..|+|..+...- .+.-++.+..|+-||
T Consensus 54 ~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~ 133 (501)
T 1wle_A 54 ARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLT 133 (501)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHH
Confidence 4566666532 4689999999999999999999999999999998865322 122355566678888
Q ss_pred HHHHHHHHHhhcCC
Q 001953 860 SLTVQLKKMAEKSP 873 (992)
Q Consensus 860 sLt~qlk~~~e~lp 873 (992)
.|.++++++.++|-
T Consensus 134 ~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 134 LLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
No 102
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.85 E-value=18 Score=35.46 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhhhHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK----------------------CKTANEVIKSL 861 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ake~iksL 861 (992)
....|+.+|+.++..-+.+...-+.+..+..+.+++.++-+-+||-| .+-+..+|++|
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677766666666666666666667777777766666555532 22234567777
Q ss_pred HHHHHHHh
Q 001953 862 TVQLKKMA 869 (992)
Q Consensus 862 t~qlk~~~ 869 (992)
..||+++.
T Consensus 135 q~ql~~LK 142 (154)
T 2ocy_A 135 TLQLKNLK 142 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 103
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.84 E-value=18 Score=35.56 Aligned_cols=64 Identities=31% Similarity=0.355 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+..++.+...+++....+|...+.+|+.....+|..-.....=+.|-..-.+=||.|+.+||+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666777777777777777777777655444444445555577788888888764
No 104
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=74.84 E-value=4.3 Score=45.83 Aligned_cols=37 Identities=14% Similarity=0.477 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 40 ~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
..+|.|+..+|++-|.|.+++|++.||..|+.+|++.
T Consensus 338 ~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~p 374 (386)
T 3lju_X 338 PHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRP 374 (386)
T ss_dssp CEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 4899999989999999999999999999999999874
No 105
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=74.54 E-value=82 Score=32.40 Aligned_cols=238 Identities=12% Similarity=-0.005 Sum_probs=114.0
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeec-CCCcEEEEEecC-cEEEEEEcCCcEEEEcCCCCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEIL-SGVNVELVACGE-YHTCAVTRSGDLYTWGDGTYN 326 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l-~~~~I~~Va~G~-~hs~aLT~dG~VysWG~n~~~ 326 (992)
+..+.-..++++.||++++++....+.+....... ...+..+ ....|..++... ...++...+|.|..|-....
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~- 82 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH---ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHP- 82 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE---EEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTST-
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCc---cccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCC-
Confidence 34445567889999999998876554433222111 1111111 233555555432 23344445899999965421
Q ss_pred CCccCCCCCccccccceeccCCCCCcEEEEEECcc--eeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeec--cC
Q 001953 327 SGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLW--HTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETL--RG 402 (992)
Q Consensus 327 ~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~--hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l--~~ 402 (992)
... . ....+........|..++.... ..++...+|.|+.|-.... .+..+..+ ..
T Consensus 83 -~~~------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~ 141 (337)
T 1gxr_A 83 -GNK------S--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSA 141 (337)
T ss_dssp -TCC------S--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSS
T ss_pred -Cce------e--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCC
Confidence 100 0 0001111112334666655433 3444567888988864321 11111111 12
Q ss_pred CeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeec--CcE
Q 001953 403 LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACG--HDL 480 (992)
Q Consensus 403 ~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~h 480 (992)
..|..++.......+++. ..+|.|+.|-..... ....+. .....|..++.. ...
T Consensus 142 ~~i~~~~~~~~~~~l~~~------------~~dg~v~~~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSC------------CSDGNIAVWDLHNQT-----------LVRQFQ-GHTDGASCIDISNDGTK 197 (337)
T ss_dssp SCEEEEEECTTSSEEEEE------------ETTSCEEEEETTTTE-----------EEEEEC-CCSSCEEEEEECTTSSE
T ss_pred CceEEEEECCCCCEEEEE------------eCCCcEEEEeCCCCc-----------eeeeee-cccCceEEEEECCCCCE
Confidence 245666554333222221 445888888543210 011111 123446555543 335
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEc--CCEEEEEEcCCcEEEEEcC
Q 001953 481 SVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACG--AYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 481 tvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G--~~Ht~aLt~~G~Vy~WG~N 548 (992)
.+....+|.|+.|-.... ....... ....|..++.. ....++-..+|.|+.|-..
T Consensus 198 l~~~~~dg~i~~~d~~~~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREG----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEEEETTSEEEEEETTTT----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEecCCcEEEEECCCC----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 555667888888864321 1111111 12346666553 3445555678889988654
No 106
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.16 E-value=3.6 Score=33.59 Aligned_cols=55 Identities=22% Similarity=0.513 Sum_probs=41.0
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
+...|..|+.. .....|..|...|+..|..+... ..++..+.|+.|...+.++++
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQDQMLKKEE 58 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCS------SCCCSCCCCHHHHHHHHHTTT
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcC------CCCCCceEChhccChhhchhc
Confidence 45678899874 35677999999999999875322 134568999999988777654
No 107
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.98 E-value=19 Score=36.45 Aligned_cols=61 Identities=16% Similarity=0.407 Sum_probs=47.1
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV-------TAIAEDEAEKCKTANE 856 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ake 856 (992)
++.+.....|..||..+.++...|..++.....+++..+.|++.+ +..+.+|.++.+.+++
T Consensus 38 esSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 38 EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888899999999999999999999988888888777 5556666666554433
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.93 E-value=6.2 Score=45.13 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 837 LKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 837 ~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
.+++.+.+++-.++.|+.++-++.+.++|.++..+||--
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345556666666777777777777777888888777644
No 109
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.89 E-value=27 Score=31.61 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=35.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
....++++..++...|..|..+....+.++.++...++++...+.+.-.+...|-.-+.+|+-.+.
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555665566666666666666654444333333445556777776443
No 110
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=73.77 E-value=8.5 Score=35.51 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 39 EYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 39 ~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
...||-|+...++.=|.|.|+++++.|+.-|+..+.
T Consensus 71 ~~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 71 SGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 357999999888999999999999999999987654
No 111
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.64 E-value=5.8 Score=45.87 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=3.3
Q ss_pred cceeEEE
Q 001953 954 NEVKRVR 960 (992)
Q Consensus 954 ~~~~r~~ 960 (992)
+.|-|+|
T Consensus 294 ~GL~R~r 300 (455)
T 2dq0_A 294 KGIFRVH 300 (455)
T ss_dssp CSSSSCS
T ss_pred CCceeee
Confidence 4444554
No 112
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=73.57 E-value=15 Score=37.69 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=15.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAEL 830 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (992)
|.+|+.-..|..++..++.+...|..+......++
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444433333333
No 113
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=73.44 E-value=8.2 Score=30.14 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
|.+=-.+|-.+|..|+..|...+.|++++++-++.
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 33344455668899999999999999999987764
No 114
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.35 E-value=9.3 Score=33.31 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=14.6
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELE 831 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (992)
+.||..|..|.+|++.+++..+.|.++-++...|..
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444443334333333333333
No 115
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.31 E-value=8.5 Score=35.54 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 001953 828 AELERTSKQLKTV 840 (992)
Q Consensus 828 ~~~~~~~~~~~~~ 840 (992)
-||+.+.++|+++
T Consensus 78 gEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 78 GEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 116
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=71.21 E-value=3.5 Score=38.05 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=34.0
Q ss_pred CCCceEEEEE----cCCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 38 KEYQSFSLIY----NDRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 38 ~~~~~fs~i~----~~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
....||.|+. ..+++-|.|.+.+|++.||..|+..+...+
T Consensus 70 ~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 70 PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 3457999997 346888999999999999999999998654
No 117
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=70.54 E-value=98 Score=31.57 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=12.1
Q ss_pred EEEEEeCCCcEEEEeCC
Q 001953 480 LSVALTTSGHVYTMGSA 496 (992)
Q Consensus 480 htvaLT~dG~Vy~wG~N 496 (992)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45777778888877644
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.14 E-value=29 Score=33.30 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
+-.|..+++.+++.|.++-+..+.|+..++.++.++-....+--.+-...++-|+.|..|++.+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666655333333333345566666666666654
No 119
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=70.13 E-value=9.7 Score=36.54 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
.|...+.-+++++++-.+.-++.+.|.+-+-+..++||...+.---|-++|++.+++|+..|...--||
T Consensus 24 qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 24 QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 345555556666667677777788889999999999999999999999999999999999888777664
No 120
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=69.86 E-value=8.9 Score=34.38 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=55.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
...|++=++.|++|+.+|+++-.+|. .=|+.+-.+.....+++++..+...+ +|-|-|-.|..+|+-+.|-
T Consensus 15 a~~L~~F~d~Lq~~~~~L~~~f~~L~---sWqDqkr~kFee~fe~l~s~l~~f~e---~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 15 VGHLERFKELLREEVNSLSNHFHNLE---SWRDARRDKFSEVLDNLKSTFNEFDE---AAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---SCCSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---hHhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHhHHHHHHHHHhHHH
Confidence 45788999999999999999999995 35666666666666777766666655 6788888998888876653
No 121
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=69.72 E-value=21 Score=28.85 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
...+.+|+..+.++..++.....+++.+++++..+. +.++.+.|=|..|-.|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-------~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIF-------EKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 456777788888887777777777777777776654 445555555655555543
No 122
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.27 E-value=1.9e+02 Score=34.40 Aligned_cols=232 Identities=9% Similarity=-0.010 Sum_probs=112.2
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEe--cCcEEEEEEcCCcEEEE
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVAC--GEYHTCAVTRSGDLYTW 320 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~--G~~hs~aLT~dG~VysW 320 (992)
.|..|+.. +...++-..+|.|+.|-...... ...+. .....|..++. .....++.+.+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------VRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------EEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------EEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45555544 34455556789999996432111 11111 11234555543 33456666778999999
Q ss_pred cCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcc--eeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEe
Q 001953 321 GDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLW--HTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVE 398 (992)
Q Consensus 321 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~--hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~ 398 (992)
-..+ |. ....+.. ....|..++.... +.+.-..+|.|..|-...... ....+.
T Consensus 83 ~~~~---~~----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~ 137 (814)
T 3mkq_A 83 NYNT---GE----------KVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------LEQTFE 137 (814)
T ss_dssp ETTT---CC----------EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----------EEEEEE
T ss_pred ECCC---Cc----------EEEEEec--CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----------EEEEEc
Confidence 6542 11 0111111 2234666654433 344456788888886322100 011111
Q ss_pred eccCCeEEEEEeCC-ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEee-
Q 001953 399 TLRGLRTTRVSCGV-WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVAC- 476 (992)
Q Consensus 399 ~l~~~~I~~VacG~-~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~- 476 (992)
. ....|..++... ....+++. ..+|.|+.|--..... ...+.......+..++.
T Consensus 138 ~-~~~~v~~~~~~p~~~~~l~~~------------~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~ 193 (814)
T 3mkq_A 138 G-HEHFVMCVAFNPKDPSTFASG------------CLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYY 193 (814)
T ss_dssp C-CSSCEEEEEEETTEEEEEEEE------------ETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEEC
T ss_pred C-CCCcEEEEEEEcCCCCEEEEE------------eCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEE
Confidence 1 123466666544 22233321 4559999996432110 11111111123434433
Q ss_pred ---cCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCC--EEEEEEcCCcEEEEEcCC
Q 001953 477 ---GHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAY--HVAALTSTSKVYTWGKGA 549 (992)
Q Consensus 477 ---G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~--Ht~aLt~~G~Vy~WG~N~ 549 (992)
.....++-..+|.|+.|-... ......+.. ....|..++.... ..++-..+|.|+.|-...
T Consensus 194 ~~~~~~~l~~~~~dg~i~~~d~~~----------~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 194 PLPDKPYMITASDDLTIKIWDYQT----------KSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CSTTCCEEEEECTTSEEEEEETTT----------TEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ECCCCCEEEEEeCCCEEEEEECCC----------CcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 344555667788999996432 111222221 2345666665543 455556789999996543
No 123
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=69.26 E-value=6.4 Score=45.08 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=50.9
Q ss_pred cchHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhHHHHHHHH
Q 001953 796 DDSKQMNDS---LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK----------TVTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 796 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ake~iksLt 862 (992)
+++++++.. +..+|..|-.+-+++..+.+...++..+..|+|. ++.+.+++-.++.|+.++-++.+.
T Consensus 16 ~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 16 ERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp HHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 2466666666666666666666666666666654 335566666667777777777777
Q ss_pred HHHHHHhhcCCCC
Q 001953 863 VQLKKMAEKSPEG 875 (992)
Q Consensus 863 ~qlk~~~e~lp~~ 875 (992)
++|.++..+||--
T Consensus 96 ~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 96 EELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhCCCC
Confidence 7777777777654
No 124
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.22 E-value=44 Score=30.90 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
.|..|+.+|+..-+.|..+....+++-..+.+...-+.+-+.|.-.|...|-|-.=.|..+|+|
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777788888899999999999999999998875
No 125
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.06 E-value=15 Score=43.41 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=41.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQL 865 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ql 865 (992)
+..+++..+.+..|+++++.+++..+++.+..+.|+.+.++++++.-....|....-..+++-||.|-..+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555666666666777777777666666666666555555555544444445556666555443
No 126
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=68.95 E-value=1.1e+02 Score=31.70 Aligned_cols=161 Identities=12% Similarity=-0.022 Sum_probs=74.6
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec--CcEEEEEEcC-----C
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG--EYHTCAVTRS-----G 315 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~d-----G 315 (992)
.|..|+.. ..+.+....||.|+.|-......+ ..+. ....|..++.. ..+.++...+ |
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 46666554 456667778999999965332111 1111 22345555543 2344444555 8
Q ss_pred cEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc--ceeEEEecCCeEEEEecCCCCCCCCCCCcCCCc
Q 001953 316 DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL--WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSI 393 (992)
Q Consensus 316 ~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~--~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~ 393 (992)
.|+.|-.... .....-..........+........+..++... .+.++.+.+|.|+.|-....++
T Consensus 143 ~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------- 209 (369)
T 3zwl_B 143 SINIYEIERD--SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE----------- 209 (369)
T ss_dssp EEEEEEEEEC--TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-----------
T ss_pred EEEEEEecCC--ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-----------
Confidence 8888854421 110000000000111111111112455555433 3455556788999886432111
Q ss_pred CeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeC
Q 001953 394 PREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGD 443 (992)
Q Consensus 394 P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~ 443 (992)
+..........|..++.......+++. ..+|.|+.|-.
T Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~l~~~------------~~d~~i~v~d~ 247 (369)
T 3zwl_B 210 YVDSIDLHEKSISDMQFSPDLTYFITS------------SRDTNSFLVDV 247 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEE------------ETTSEEEEEET
T ss_pred eEEEEecCCCceeEEEECCCCCEEEEe------------cCCceEEEEEC
Confidence 111111122356666665444444422 44588888854
No 127
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=68.79 E-value=14 Score=42.80 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=19.0
Q ss_pred cceeEEE-eec-ccc---CHHH--HHHHHH---Hccchhhhhccc
Q 001953 954 NEVKRVR-FSR-KHF---TEQE--AEKWWS---ENGAKICERYNI 988 (992)
Q Consensus 954 ~~~~r~~-f~~-~~f---~~~~--a~~ww~---~~~~~~~~~~~~ 988 (992)
+-|-||| |.. +.| .+.| +..+.+ ++..+|++..++
T Consensus 311 ~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGL 355 (484)
T 3lss_A 311 LGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGL 355 (484)
T ss_dssp STTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666775 765 444 3334 544443 456667766554
No 128
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=68.28 E-value=1e+02 Score=32.19 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.3
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 001953 306 YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 306 ~hs~aLT~dG~VysWG~n 323 (992)
.|++++ -+|.||.+|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 466555 48899999864
No 129
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=68.14 E-value=8.7 Score=27.94 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
-|.+|..+|++|..+-...+.|+.++++.+.+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 367888899999888888888888888776553
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.63 E-value=19 Score=36.09 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA---EDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ake~iksLt~qlk~ 867 (992)
-+.-...|++|+.|+..|.++.+..+.|++.+++++.++-... .+..+|-..--+||+-|-..|=.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccC
Confidence 3333445666777777777777777777777776665554433 23333333444566666655544
No 131
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.57 E-value=16 Score=46.88 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=5.1
Q ss_pred eeEeeCCC
Q 001953 2 LIWYSGKE 9 (992)
Q Consensus 2 l~w~~~~k 9 (992)
.+|.+..+
T Consensus 12 ~vwv~~~~ 19 (1080)
T 2dfs_A 12 RVWIPDPE 19 (1080)
T ss_dssp EEEEEETT
T ss_pred EEEEECCC
Confidence 46777654
No 132
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=67.18 E-value=5.7 Score=35.19 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=29.0
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~ 71 (992)
...+|.|+..+ +++=|.|.|.+|++.||..|+.
T Consensus 72 ~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 72 KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp SSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CccEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 35799999854 8999999999999999999874
No 133
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=66.94 E-value=9.2 Score=42.43 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=45.1
Q ss_pred eeEeeCCCc---c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEc----------------------CCCceee
Q 001953 2 LIWYSGKEE---R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN----------------------DRSLDLI 55 (992)
Q Consensus 2 l~w~~~~k~---k-~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~~----------------------~~sLdLi 55 (992)
|.||...++ + .|.|..+. |+.-. +.....||.|+.. .+++-|.
T Consensus 241 L~Yyk~~~~~~p~G~I~L~~~~-v~~~~----------~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~ 309 (347)
T 2r09_A 241 LYYFEYTTDKEPRGIIPLENLS-IREVE----------DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRIS 309 (347)
T ss_dssp EEEESSTTCSSCSEEEECTTCE-EEEEC----------CSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEE
T ss_pred EEEEcCCCccCCcEEEEcCCeE-EEEcc----------CCCCCCEEEEEeCCccccccccccccccccccccCceEEEEE
Confidence 566766542 2 37887765 33211 1233568888762 4789999
Q ss_pred eCCHHHHHHHHHHHHHHHhcC
Q 001953 56 CKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 56 ~~~~~ea~~W~~gL~~l~~~~ 76 (992)
|.+++|++.||..|+..+...
T Consensus 310 A~s~ee~~~Wi~aI~~ai~~~ 330 (347)
T 2r09_A 310 APSPEEKEEWMKSIKASISRD 330 (347)
T ss_dssp CSSHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999854
No 134
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.74 E-value=11 Score=43.93 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=60.0
Q ss_pred ccchHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 795 IDDSKQMNDS--LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 795 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
.+.+++++.. +..+|..|-.+-++|..+.+...++..+..|+|..+... +.+--++-+..|+-||.|.++++++.
T Consensus 19 ~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 19 KASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666532 478999999999999999999999999999999876431 12233445667888888888888888
Q ss_pred hcCCC
Q 001953 870 EKSPE 874 (992)
Q Consensus 870 e~lp~ 874 (992)
++|-.
T Consensus 99 ~~~~~ 103 (485)
T 3qne_A 99 KNLRS 103 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 135
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.17 E-value=8.5 Score=30.88 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=10.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELT 820 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (992)
+|.|+..|+.|.+++..|++++++|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 136
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=66.12 E-value=12 Score=35.00 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=44.2
Q ss_pred EeeCCCcceeeccceeeeccCccCcccccCCCCCCCCceEEEEE-c--C---CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 4 WYSGKEERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY-N--D---RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 4 w~~~~k~k~~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~-~--~---~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
|+...|-..+.+++|-.+..-++. ...|=||. + . +..||.|.+++||.-=|+-|++||+.
T Consensus 50 ~~~~~KTtS~H~s~Vv~~K~s~k~------------P~~FKivV~k~~~~e~KrYdfEA~s~~ea~EIV~~ik~~~~~ 115 (121)
T 3ulb_A 50 WHDNVKTKSLHISQVVLVKKSKRV------------PEHFKIFVRREGQDDIKRYYFEAVSGQECTEIVTRLQNLLSA 115 (121)
T ss_dssp ---CCCCEEEEGGGEEEEEECSSC------------TTEEEEEECCTTCSSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEEeeEEEEEecccC------------CCcEEEEEEccCCCCcceeEEEeCCHHHHHHHHHHHHHHHHH
Confidence 555555566888888877765443 35666777 3 2 47899999999999999999999973
No 137
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.03 E-value=3.4 Score=35.64 Aligned_cols=50 Identities=20% Similarity=0.598 Sum_probs=39.3
Q ss_pred ccCcCCCCCCCCCcc-cccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFR-RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~-r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
....|..|..+|++. .+-..|..|-+.+|..|-.- . ..+.+.|.-|+...
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~-------~---~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ-------E---SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE-------C---STTCEEEHHHHSSC
T ss_pred CccchhhhCccccccccCCCcCcccChhhccccccc-------C---CCCCEEEeeCchhh
Confidence 366899999999954 56677999999999999542 1 12789999998754
No 138
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=65.61 E-value=8.9 Score=26.03 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001953 817 EELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+.|+.+|...+.++|.+.|+++.
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998863
No 139
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=65.60 E-value=4.9 Score=39.28 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 38 KEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 38 ~~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
....||.|+..++++=|.|.+++|++.||..|+..+..
T Consensus 75 ~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~~ 112 (168)
T 2j59_M 75 KRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNL 112 (168)
T ss_dssp SCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 34579999997789999999999999999999988864
No 140
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=65.23 E-value=13 Score=43.29 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=22.9
Q ss_pred ccchHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDS--LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 795 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.+++.+.. +..+|..|-.+-+.+..+.+...++..+..|+|..
T Consensus 23 ~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 23 RESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554422 34555555555555555555555555555554443
No 141
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.18 E-value=1.6e+02 Score=32.04 Aligned_cols=225 Identities=12% Similarity=0.002 Sum_probs=113.8
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecC-----cEEEEEEcCCcEEEEcCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGE-----YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~-----~hs~aLT~dG~VysWG~n 323 (992)
.+....+.+++|+.|++|..-...--..+... .-......+....+.+|+.+.+.. ...+++|.+|.+.-.-..
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 45667888899999999998743322111110 000111123333567888876653 578899999988876544
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEE--EECcceeEEEecCCeEEEEecC--CCCCCCCCCCcCCCcCeEEee
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYI--SCGLWHTAVVTSAGHLFTFGDG--SFGALGHGDHISTSIPREVET 399 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~V--acG~~hs~aLT~dG~Vy~wG~n--~~GqLG~g~~~~~~~P~~V~~ 399 (992)
.|.. + .. .-.......++..++.+ +.+..+.+++|++|++|.+--. .--.+|.+..-.. .+..
T Consensus 128 ~~~~-~-----~r---~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~----~i~L 194 (327)
T 3uc1_A 128 DFDS-N-----RS---GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ----GMRF 194 (327)
T ss_dssp GGCC-C-----CS---SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE----SSCC
T ss_pred Hhhc-c-----cc---CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee----eecC
Confidence 3310 0 00 00111111233445443 4466788999999999999866 4333333221110 1222
Q ss_pred ccCCeEEEEEeCCce-EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEE--ee
Q 001953 400 LRGLRTTRVSCGVWH-TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQV--AC 476 (992)
Q Consensus 400 l~~~~I~~VacG~~h-t~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~I--a~ 476 (992)
-.+.+|+.+..-... .++++ |++|.+.-.--.++-..+.+....... .+.. .+..++.+ ..
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~-------------T~~G~~Krt~l~e~~~~~R~~~G~~~~--~l~~-~~d~lv~~~~~~ 258 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVA-------------TSGGYAKRTAIEEYPVQGRGGKGVLTV--MYDR-RRGRLVGALIVD 258 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEE-------------ETTSEEEEEEGGGSCBCCTTSCCEESS--CCCT-TTCSEEEEEEEC
T ss_pred CCCCEEEEEEEECCCCEEEEE-------------eCCCcEEEEEHHHccccCcCCCcEEEE--EecC-CCCeEEEEEEeC
Confidence 234567666554322 23332 555766554333332211111110000 0000 01223332 23
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 001953 477 GHDLSVALTTSGHVYTMGSAAYGQLGV 503 (992)
Q Consensus 477 G~~htvaLT~dG~Vy~wG~N~~GQLG~ 503 (992)
+....+++|++|.+.-+-..+.-.+|.
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred CCccEEEEcCCCeEEEEehhhccccCC
Confidence 567889999999988876555444443
No 142
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=65.14 E-value=1.3e+02 Score=30.88 Aligned_cols=272 Identities=9% Similarity=0.013 Sum_probs=129.9
Q ss_pred ceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCC-cEEEEEEcCCcEEEEeC
Q 001953 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA-RHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 192 ~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~-~hs~~Lt~dG~Vy~WG~ 270 (992)
....++..+|.+++++... .+.+..... ........+. ....|..++... ...++...+|.|..|-.
T Consensus 12 v~~~~~s~dg~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~ 79 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPP-DALIGPGIP---------RHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDI 79 (337)
T ss_dssp CCEEEECSSSCEEECCCCT-TSSSSTTCC---------SEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEET
T ss_pred eeEEEECCCCCEEEeecCC-CcEeccccC---------Cccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEEC
Confidence 3457788999999988866 333222110 0000111111 223455555432 22333444899999976
Q ss_pred CCCCccCCCCCCCccccEEeee-cCCCcEEEEEecC--cEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccC
Q 001953 271 ESGGRLGHGREADVSHPQLIEI-LSGVNVELVACGE--YHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGN 347 (992)
Q Consensus 271 N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Va~G~--~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~ 347 (992)
....... ....+.. -....|..++... ...++...+|.|+.|-.... . . .....+.
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~-------~-~~~~~~~-- 138 (337)
T 1gxr_A 80 SHPGNKS--------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---T-------P-RIKAELT-- 138 (337)
T ss_dssp TSTTCCS--------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------EEEEEEE--
T ss_pred CCCCcee--------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---C-------c-ceeeecc--
Confidence 4432110 1111110 1233566666543 34555567899999954421 0 0 0001111
Q ss_pred CCCCcEEEEEEC--cceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeec--cCCeEEEEEeCCceEEEEEEccC
Q 001953 348 LDGIHLSYISCG--LWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETL--RGLRTTRVSCGVWHTAAVVVATD 423 (992)
Q Consensus 348 l~~~~Iv~VacG--~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~VacG~~ht~aLve~~~ 423 (992)
.....|..++.. ..+.+..+.+|.|+.|-.... ..+..+ ....|..++.......+++.
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~--- 201 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTG--- 201 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEE---
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEE---
Confidence 122345555543 334555567888998864321 111111 12346666654433233321
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEee--cCcEEEEEeCCCcEEEEeCCCCCCC
Q 001953 424 SSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVAC--GHDLSVALTTSGHVYTMGSAAYGQL 501 (992)
Q Consensus 424 ~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~htvaLT~dG~Vy~wG~N~~GQL 501 (992)
..+|.|+.|-...... ...+. ....+..++. .....++-..+|.|+.|-.....
T Consensus 202 ---------~~dg~i~~~d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-- 257 (337)
T 1gxr_A 202 ---------GLDNTVRSWDLREGRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-- 257 (337)
T ss_dssp ---------ETTSEEEEEETTTTEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--
T ss_pred ---------ecCCcEEEEECCCCce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--
Confidence 4558999995432110 01111 1233444433 23344455567777777643211
Q ss_pred CCCCCCCcceeeecCCcCCCCEEEEEEc--CCEEEEEEcCCcEEEEEcC
Q 001953 502 GVPVADGLVPTRVDGEIAESFVEEVACG--AYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 502 G~~~~~~~~P~~v~~~l~~~~V~~Ia~G--~~Ht~aLt~~G~Vy~WG~N 548 (992)
...+. .....|..++.. ....++...+|.|+.|-..
T Consensus 258 ---------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 258 ---------KYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ---------EEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ---------eEEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 11111 223457777765 3455566788999999654
No 143
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.01 E-value=1.3e+02 Score=31.16 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=12.2
Q ss_pred cceeEEEecCCeEEEEec
Q 001953 360 LWHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 360 ~~hs~aLT~dG~Vy~wG~ 377 (992)
..|++++. +|+||.+|-
T Consensus 104 ~~~~~~~~-~~~lyv~GG 120 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGG 120 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcc
Confidence 35666554 789999984
No 144
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.89 E-value=6.3 Score=34.89 Aligned_cols=62 Identities=13% Similarity=0.348 Sum_probs=44.2
Q ss_pred cCcCCCCCCCCCc-ccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcccc
Q 001953 599 HSVCSSCHNPFGF-RRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (992)
Q Consensus 599 ~s~C~~C~~~Fsf-~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~~ 662 (992)
...|..|+..... ......|-.|...|+..|..+.+..... ..++..|+|..|....++...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~--~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEV--NDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHH--HCTTCCCCCHHHHHHHCCSTT
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccccc--CCCCCCeeCccccchhhhhcc
Confidence 4579999876443 3567889999999999998755432111 135678999999988776543
No 145
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.27 E-value=19 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+...+.|.+++..|..+...|+.+.+..+.|++-++.-+.|
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677777777777777777777777777766655543
No 146
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=63.21 E-value=72 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=17.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
.+++.++-+--.+--+.+.+|+ |++.++..+.+-+-+++.++
T Consensus 45 leEIqkKLeAAEERRks~Ea~~--lk~laekrehe~EvlqKa~E 86 (143)
T 3ryc_E 45 LEEIQKKLEAAEERRKYQEAEL--LKHLAEKREHEREVIQKAIE 86 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3555555444333223333322 44444444444444444433
No 147
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=63.00 E-value=1.8e+02 Score=31.90 Aligned_cols=261 Identities=7% Similarity=-0.008 Sum_probs=120.5
Q ss_pred CEEEEEeCC---cEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec---CcEEEEEEcCCcEE
Q 001953 245 DVHNIACGA---RHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG---EYHTCAVTRSGDLY 318 (992)
Q Consensus 245 ~I~~Ia~G~---~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG~Vy 318 (992)
.|..|+... ...+..+.+|.|+.|-......... ......+..........|..|+.. ..+.+.-..+|.|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 355555443 2344446689999998654211100 000011111111112234444432 23555566789999
Q ss_pred EEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCe
Q 001953 319 TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPR 395 (992)
Q Consensus 319 sWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~ 395 (992)
.|-.... +.. .....+.... ......|..|+.. ....+....+|.|+.|-...... ..+.
T Consensus 208 vwd~~~~--~~~-----~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 208 LWDINAT--PKE-----HRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp EEETTSC--CBG-----GGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred EEeCCCC--CCC-----Cceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 9976521 100 0111111111 1223357777663 34445556899999997543211 0111
Q ss_pred EEeeccCCeEEEEEeCCce--EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEE
Q 001953 396 EVETLRGLRTTRVSCGVWH--TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQ 473 (992)
Q Consensus 396 ~V~~l~~~~I~~VacG~~h--t~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~ 473 (992)
.........|..|+..... .++. . ..+|.|..|-....++ |..........|..
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~t-g------------~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~ 326 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILAT-G------------SADKTVALWDLRNLKL-----------KLHSFESHKDEIFQ 326 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEE-E------------ETTSEEEEEETTCTTS-----------CSEEEECCSSCEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEE-E------------eCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEE
Confidence 1111122346666654432 2332 1 4458999996543221 11111112345666
Q ss_pred Eeec---CcEEEEEeCCCcEEEEeCCCCCCCCCCCC-CCcceeeecC-CcCCCCEEEEEEcCC---EEEEEEcCCcEEEE
Q 001953 474 VACG---HDLSVALTTSGHVYTMGSAAYGQLGVPVA-DGLVPTRVDG-EIAESFVEEVACGAY---HVAALTSTSKVYTW 545 (992)
Q Consensus 474 Ia~G---~~htvaLT~dG~Vy~wG~N~~GQLG~~~~-~~~~P~~v~~-~l~~~~V~~Ia~G~~---Ht~aLt~~G~Vy~W 545 (992)
|+.. ....+.-..+|.|..|-....+....... ....|..+.. .-....|..++.... ..+....+|.|.+|
T Consensus 327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 6543 33345556788888887654332111000 0000111111 112345777776543 45556788999999
Q ss_pred EcC
Q 001953 546 GKG 548 (992)
Q Consensus 546 G~N 548 (992)
-..
T Consensus 407 ~~~ 409 (430)
T 2xyi_A 407 QMA 409 (430)
T ss_dssp EEC
T ss_pred Ecc
Confidence 754
No 148
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=62.94 E-value=16 Score=40.05 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=31.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
|+..+++..|.+|+.+|+..|.+...+.+.++.+++..+++|++.-.++.+-.++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777888887766666655555555555555555555444333334443
No 149
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=62.60 E-value=52 Score=31.90 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+-+..|..|++.++..++.-+.+.....+++.-+-.-...--+|..+|-.=|+.|-.+|+.|...
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666555555555554433333333334445555555565555555544
No 150
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=62.58 E-value=1.6e+02 Score=31.12 Aligned_cols=249 Identities=6% Similarity=-0.054 Sum_probs=119.6
Q ss_pred CCEEEEEe---CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecC-----cEEEEEEcCC
Q 001953 244 LDVHNIAC---GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGE-----YHTCAVTRSG 315 (992)
Q Consensus 244 ~~I~~Ia~---G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~-----~hs~aLT~dG 315 (992)
..|..|+. +....+....+|.|+.|-..... +...... ...+..+.... ...++-+.+|
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNF-EETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEEC-SSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccC-CCceeeeEeecCCCCCcEEEEEcCCC
Confidence 45777765 44566777789999999653211 1111111 22444444432 2566667889
Q ss_pred cEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcce---eEEEecCCeEEEEecCCCCCCCC-C---CC
Q 001953 316 DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWH---TAVVTSAGHLFTFGDGSFGALGH-G---DH 388 (992)
Q Consensus 316 ~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~h---s~aLT~dG~Vy~wG~n~~GqLG~-g---~~ 388 (992)
.|+.|-... +. ....+. .....|..++..... .+.-..+|.|+.|-.......-. - ..
T Consensus 167 ~v~~~d~~~---~~----------~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 167 KVQLCDLKS---GS----------CSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SEEEEESSS---SC----------CCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred eEEEEeCCC---cc----------eeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 999996542 11 011111 122346666654332 44557889999997543221100 0 00
Q ss_pred cCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCC
Q 001953 389 ISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLID 468 (992)
Q Consensus 389 ~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~ 468 (992)
.....+..........|..++.......+++- ..+|.|+.|--.....+-.-... ........
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~ 294 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTV------------GTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKG 294 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE------------ETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEe------------cCCCeEEEEECCCCccceecccc-----cccccccc
Confidence 00000000001112356777665544333322 45589999965442221100000 00000011
Q ss_pred CCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcC--CEEEEEEcCCcEEEEE
Q 001953 469 ENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA--YHVAALTSTSKVYTWG 546 (992)
Q Consensus 469 ~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~--~Ht~aLt~~G~Vy~WG 546 (992)
..+..........++...+|.|+.|-..... ....+. .....|..++... .+.+.-..||.|+.|=
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE----------QITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCC----------EEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCc----------ceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 1122222334455566778899999754311 111111 1234566666654 4455566799999997
Q ss_pred cCC
Q 001953 547 KGA 549 (992)
Q Consensus 547 ~N~ 549 (992)
...
T Consensus 363 ~~~ 365 (408)
T 4a11_B 363 PSL 365 (408)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 151
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.47 E-value=15 Score=25.40 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELE 831 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (992)
.|++|+.+|++-|++|.++.+..+.-+|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888998888888887776665544
No 152
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=62.13 E-value=1.5e+02 Score=30.78 Aligned_cols=166 Identities=12% Similarity=0.013 Sum_probs=77.8
Q ss_pred CCCcEEEEEEC-cceeEEEecCCe-EEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCC
Q 001953 349 DGIHLSYISCG-LWHTAVVTSAGH-LFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSS 426 (992)
Q Consensus 349 ~~~~Iv~VacG-~~hs~aLT~dG~-Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~ 426 (992)
.+.++.-..++ ....++++.+|+ ++.|+.... ..+ ....|..+..+.+-.+. |+....+.+..+.
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~-~~~-----~~~~~~~v~~~~~G~~l-v~~~~~~~v~~~d------ 152 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG-IER-----PHAQFRQINKNKKGNYL-VPLFATSEVREIA------ 152 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS-CSS-----GGGSCSCCEECTTSCEE-EEETTTTEEEEEC------
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC-CCc-----ccccccCceECCCCCEE-EEecCCCEEEEEC------
Confidence 34455555666 556667788886 567764321 000 11123333333333343 3333444444432
Q ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCC-Cc-EEEEeCCCCCCCCCC
Q 001953 427 SSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTS-GH-VYTMGSAAYGQLGVP 504 (992)
Q Consensus 427 ~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~d-G~-Vy~wG~N~~GQLG~~ 504 (992)
.+-..+|.++... .|..+..+.+.++.-+..+....++++.+ |+ +|.++.+...-
T Consensus 153 ------~~G~~~w~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~---- 209 (276)
T 3no2_A 153 ------PNGQLLNSVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG---- 209 (276)
T ss_dssp ------TTSCEEEEEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS----
T ss_pred ------CCCCEEEEEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC----
Confidence 1113466665531 12222223344555444444457778777 76 67777543110
Q ss_pred CCCCcceeeecCCcCCCCEEEEEE--c---------CCEEEEEEcCCcEEEEEcCCCCCCC
Q 001953 505 VADGLVPTRVDGEIAESFVEEVAC--G---------AYHVAALTSTSKVYTWGKGANGQLG 554 (992)
Q Consensus 505 ~~~~~~P~~v~~~l~~~~V~~Ia~--G---------~~Ht~aLt~~G~Vy~WG~N~~GQLG 554 (992)
..-..|.-+.. +.+..+. |+. | ..+.+.++.+|+| +|=.+.....|
T Consensus 210 -~~l~~~~~~~~-~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 210 -VQLFFVAQLFP-LQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp -CCCSEEEEEEE-CTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred -ccccccccceE-cCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 00112332221 2223332 333 2 3357888888887 77776666555
No 153
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=62.00 E-value=23 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=38.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSL 861 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksL 861 (992)
+.+...|..|.-|+..++..++.++.|.+.+ +.++..++|.+.+|+..=.|--+|..+-+|-|-+|
T Consensus 10 ~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 10 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666665543 55667777777777744444444544444444443
No 154
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.76 E-value=19 Score=32.38 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
+..+||.++..|..+-...+.++++++..+.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444444444444444555555444433
No 155
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=61.61 E-value=9.4 Score=37.27 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCceEEEEE---cCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 39 EYQSFSLIY---NDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 39 ~~~~fs~i~---~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
....|.|.. +.+++||.|.+.+|++-|+..||..+-
T Consensus 110 ~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 110 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 457999999 367999999999999999999987653
No 156
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.35 E-value=64 Score=30.05 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEV 857 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~ 857 (992)
....+|..||.|+..+...-.....++..++..+++.-.--.+|..++..|..-
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667777777777766666666666666666655555555566666555433
No 157
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.23 E-value=19 Score=46.63 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=15.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
+.+++..+.+.+++.+++.++++|+.+.+..+.+++++
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434344444444444444343333333333333333
No 158
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.21 E-value=7.2 Score=31.27 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
.||..|+.+..+|+++++....+++.+++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444
No 159
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=60.95 E-value=1.6e+02 Score=30.74 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=11.7
Q ss_pred ceeEEEecCCeEEEEec
Q 001953 361 WHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 361 ~hs~aLT~dG~Vy~wG~ 377 (992)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666555 789999994
No 160
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=60.69 E-value=1.7e+02 Score=30.94 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec------C---cEEEEEEcC
Q 001953 244 LDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG------E---YHTCAVTRS 314 (992)
Q Consensus 244 ~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G------~---~hs~aLT~d 314 (992)
..|..|+......+.-..||.|+.|-...... .........+. .....|..++.. . ...+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 36788887777777778899999997643210 00011111121 123356666543 2 345555678
Q ss_pred CcEEEEcCCCCCCCccCCCCCccccccceeccCCC---CCcEEEEEEC------cce-eEEEecCCeEEEEecCC
Q 001953 315 GDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLD---GIHLSYISCG------LWH-TAVVTSAGHLFTFGDGS 379 (992)
Q Consensus 315 G~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~---~~~Iv~VacG------~~h-s~aLT~dG~Vy~wG~n~ 379 (992)
|.|+.|-... +.. ........+..... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 91 g~i~iw~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 91 GDLLFYRITR---EDE-----TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp SCEEEEEEEE---CTT-----TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCEEEEEccC---Ccc-----cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9999995441 110 00000111211100 2346666544 334 45556889999996543
No 161
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=60.64 E-value=1.8e+02 Score=31.21 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=60.0
Q ss_pred EEEeCCcEEEEE---EcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec---CcEEEEEEcCCcEEEEc
Q 001953 248 NIACGARHAVLV---TKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG---EYHTCAVTRSGDLYTWG 321 (992)
Q Consensus 248 ~Ia~G~~hs~~L---t~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG~VysWG 321 (992)
.+++.....+++ ..+|.|+.|-.+..|++.... +. +.. ....|..++.. ....+.-..||.|..|-
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~------~~-~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV------PL-VCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC------CC-BCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC------ce-Eec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 366666666554 458999999876555432110 00 110 12356677653 44555566789999996
Q ss_pred CCCCCCCccCCCCCccccccc-eeccCCCCCcEEEEEECcc---eeEEEecCCeEEEEec
Q 001953 322 DGTYNSGLLGHGSKVSCWIPR-KVSGNLDGIHLSYISCGLW---HTAVVTSAGHLFTFGD 377 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~-~v~~~l~~~~Iv~VacG~~---hs~aLT~dG~Vy~wG~ 377 (992)
.... +... ....+. .+. .....|..|+.... ..+.-..+|.|+.|-.
T Consensus 111 ~~~~--~~~~-----~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 111 IPDG--GLVL-----PLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp CCTT--CCSS-----CBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred ccCC--CCcc-----ccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 5521 1110 000111 111 12345767765543 3444567899999964
No 162
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=60.48 E-value=89 Score=33.49 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.6
Q ss_pred CcEEEEEEcCCcEEEEcCC
Q 001953 305 EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 305 ~~hs~aLT~dG~VysWG~n 323 (992)
..|++++ .+|+||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3576666 78999999854
No 163
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.36 E-value=10 Score=27.52 Aligned_cols=32 Identities=41% Similarity=0.519 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+|.+|..+|++|..+-...+.|+.++++-+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 46678888888888777777777777766554
No 164
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=60.21 E-value=6.3 Score=32.09 Aligned_cols=54 Identities=35% Similarity=0.633 Sum_probs=39.8
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
.|...|..|+.----..--|.|..|-..+|.-|..+-.+ ..++..+||.-|..+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~l------r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSL------RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEES------STTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeee------cCCeEEEEehhhhhc
Confidence 456789999875323334688999999999999764322 357899999999753
No 165
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=59.52 E-value=1.7e+02 Score=30.35 Aligned_cols=194 Identities=8% Similarity=-0.049 Sum_probs=99.5
Q ss_pred CCcEEEEEecCc-----EEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc--ceeEEEe
Q 001953 295 GVNVELVACGEY-----HTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL--WHTAVVT 367 (992)
Q Consensus 295 ~~~I~~Va~G~~-----hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~--~hs~aLT 367 (992)
...|..|+.... ..+.-..||.|+.|-.... +. .....+.. ....|..++... .+.+...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--~~---------~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQ---------TIPKAQQM--HTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--SC---------EEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--Cc---------eeEEEecc--ccCCEEEEEECcCCCEEEEEc
Confidence 347888887654 4444567899999965421 11 11112211 233466666543 3455567
Q ss_pred cCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEe--CCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCC
Q 001953 368 SAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSC--GVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGD 445 (992)
Q Consensus 368 ~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Vac--G~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~ 445 (992)
.+|.|..|-..... +..+.. ....|..++. ......+++. ..||.|+.|--..
T Consensus 106 ~dg~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~------------~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTG------------SWDKTLKFWDTRS 160 (368)
T ss_dssp TTSEEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEE------------ETTSEEEEECSSC
T ss_pred CCCcEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEc------------cCCCcEEEEECCC
Confidence 78999999643211 111111 1235666665 4333333322 4559999995332
Q ss_pred CCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCC--CE
Q 001953 446 KGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAES--FV 523 (992)
Q Consensus 446 ~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~--~V 523 (992)
... ...+. ....+..+..-....++.+.+|.++.|-...... +.......... .+
T Consensus 161 ~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~ 217 (368)
T 3mmy_A 161 SNP-----------MMVLQ--LPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRC 217 (368)
T ss_dssp SSC-----------SEEEE--CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEE
T ss_pred CcE-----------EEEEe--cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCce
Confidence 110 01111 1234555655566778888889999887643211 11111111112 23
Q ss_pred EEEEEcCCE----EEEEEcCCcEEEEEcCC
Q 001953 524 EEVACGAYH----VAALTSTSKVYTWGKGA 549 (992)
Q Consensus 524 ~~Ia~G~~H----t~aLt~~G~Vy~WG~N~ 549 (992)
..+...... .++-..+|.|..|-...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 218 VAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred EEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 333333322 66667899999997643
No 166
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=59.19 E-value=51 Score=31.07 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.3
Q ss_pred HHHHHh
Q 001953 864 QLKKMA 869 (992)
Q Consensus 864 qlk~~~ 869 (992)
+|++|-
T Consensus 84 ~l~el~ 89 (129)
T 2fxo_A 84 KVKEMN 89 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334333
No 167
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=59.12 E-value=1.7e+02 Score=30.23 Aligned_cols=162 Identities=10% Similarity=-0.064 Sum_probs=83.2
Q ss_pred CEEEEEe--CCc-EEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeee-cCCCcEEEEEec-CcEEEEEEcCCcEEE
Q 001953 245 DVHNIAC--GAR-HAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEI-LSGVNVELVACG-EYHTCAVTRSGDLYT 319 (992)
Q Consensus 245 ~I~~Ia~--G~~-hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Va~G-~~hs~aLT~dG~Vys 319 (992)
.|..++. ... ..+.-..+|.|+.|-....+++ ..+.. .....|..++.. ....+....+|.|+.
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~i 126 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEE
Confidence 4555544 345 6777788999999964122221 11111 022356666544 566667778999999
Q ss_pred EcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEee
Q 001953 320 WGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVET 399 (992)
Q Consensus 320 WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~ 399 (992)
|-...+ +.........+... ......|..++......++.+.+|.|+.|-....+.. .......
T Consensus 127 wd~~~~-----~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~ 190 (342)
T 1yfq_A 127 IDPRNY-----GDGVIAVKNLNSNN--TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEES 190 (342)
T ss_dssp ECHHHH-----TTBCEEEEESCSSS--SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEEC
T ss_pred Eccccc-----ccccccccCCeeeE--EeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeec
Confidence 943310 00000000001111 1123457788877777777788999999975431110 1111121
Q ss_pred ccCCeEEEEEeCC-ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCC
Q 001953 400 LRGLRTTRVSCGV-WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGD 445 (992)
Q Consensus 400 l~~~~I~~VacG~-~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~ 445 (992)
.....|..|+... ....+++. ..+|.++.|-...
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~------------~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACS------------SIDGRVAVEFFDD 225 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEE------------ETTSEEEEEECCT
T ss_pred CCCCceeEEEECCCCCCEEEEE------------ecCCcEEEEEEcC
Confidence 2223566666654 33333322 4458888886544
No 168
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=58.87 E-value=1.7e+02 Score=30.29 Aligned_cols=205 Identities=10% Similarity=-0.038 Sum_probs=103.6
Q ss_pred CCEEEEEeC------CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeee-cCCCcEEEEEecCc------EEEE
Q 001953 244 LDVHNIACG------ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEI-LSGVNVELVACGEY------HTCA 310 (992)
Q Consensus 244 ~~I~~Ia~G------~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~-l~~~~I~~Va~G~~------hs~a 310 (992)
..|..|+.. ....++...+|.|..|-......+ ........ .....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 467777764 566778888999999975432211 00010110 01235666654433 5556
Q ss_pred EEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEEEecCCCCCCCCCC
Q 001953 311 VTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFTFGDGSFGALGHGD 387 (992)
Q Consensus 311 LT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~wG~n~~GqLG~g~ 387 (992)
-..+|.|+.|-... +. ....+. .....|..|+.. ....+.-..+|.|+.|-....
T Consensus 91 ~~~dg~i~v~d~~~---~~----------~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------- 148 (366)
T 3k26_A 91 AGSRGIIRIINPIT---MQ----------CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------- 148 (366)
T ss_dssp EETTCEEEEECTTT---CC----------EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-------
T ss_pred ecCCCEEEEEEchh---ce----------Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-------
Confidence 67889999995442 11 011111 123457777664 345555677999999964321
Q ss_pred CcCCCcCeEEeec-----cCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCC-------CC-CC
Q 001953 388 HISTSIPREVETL-----RGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLG-------HG-DK 454 (992)
Q Consensus 388 ~~~~~~P~~V~~l-----~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG-------~g-~~ 454 (992)
..+..+ ....|..++.......+++. ..||.|+.|--.....+. .. +.
T Consensus 149 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 149 -------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSC------------GMDHSLKLWRINSKRMMNAIKESYDYNPNK 209 (366)
T ss_dssp -------EEEEEECSTTSCSSCEEEEEECTTSSEEEEE------------ETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred -------eEEEEecccccccCceeEEEECCCCCEEEEe------------cCCCCEEEEECCCCccccccceeEEecCCC
Confidence 111111 12356666654433333321 445899999543211100 00 00
Q ss_pred CC-------cccc-eeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCC
Q 001953 455 EP-------RLFP-ECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAA 497 (992)
Q Consensus 455 ~~-------~~~P-~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~ 497 (992)
.. ...| ..........|..|+......+.-..+|.|+.|-...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred CcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 00 0000 0001112344666655566777778899999998654
No 169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.80 E-value=19 Score=46.53 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
|.+|+.+|+.+++.+....+..+.+++.+++++++
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~ 896 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL 896 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333333333333
No 170
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=58.69 E-value=12 Score=32.58 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e 870 (992)
.|+++|+.|..++-+.-.+|.-+.+-|=.-|...-+.|+++=.|=.-+..+-.+|+++..
T Consensus 19 eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 19 DLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444555555555444444555555555555555555556666666554
No 171
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.24 E-value=22 Score=30.27 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=34.5
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+.+|+..-....+|+.+..+.+++|..+.++++.+|+.++.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667788888888888888888888888888777653
No 172
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.22 E-value=83 Score=28.56 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+|-.|.-|-..|.=||+.|+-+.+.++..+-.+++..+|-.....- -|..+..|+.++.++.+.
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~-------~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFER-------EKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4666777778888899999999999998888888887776544333 334444444444444443
No 173
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=58.08 E-value=9.8 Score=43.47 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=50.3
Q ss_pred cchHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 796 DDSKQMNDSL-NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT-AIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 796 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
+.+++++..+ ..+|..|-.+-+.+..+.+...++..+..|+|..+- .-+.+.-++.+..|+-||.|.++++++.++|-
T Consensus 16 ~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 16 RAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554322 467777777777777777777777777777765300 11222234556678888899999988888873
No 174
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.67 E-value=39 Score=31.69 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=35.3
Q ss_pred ccccchHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRA----QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTAN 855 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak 855 (992)
..++.|+...+.|..|+.+++. -|..|+.+.-+.++++...++..++ |.+|.+..++-+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~----a~~e~e~Lr~e~ 77 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ----AADDCEFLRAEL 77 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4567777777777777777665 3456666666666666666554433 345555444333
No 175
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.77 E-value=1.8e+02 Score=29.97 Aligned_cols=17 Identities=12% Similarity=0.084 Sum_probs=12.2
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 001953 306 YHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 306 ~hs~aLT~dG~VysWG~n 323 (992)
.|++++. +|+||.+|-.
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 4555554 7999999854
No 176
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=56.66 E-value=66 Score=27.26 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
..=+..+|+|-+.+.++...+-. .-++.|++++...|..-.+-.++||+-|.-|.-++..
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE--~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~ 67 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAE--EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQS 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888777654332 3456777777777777777777788777766655543
No 177
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=56.41 E-value=22 Score=33.05 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=39.0
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
.++..-+.+.+||.+|.+.++.+..+-.-.+.+...++.-.-..+.-..++..||.-+||+.+.|..|-|+|-
T Consensus 6 ~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~CeCnkei~e~L~~~~k~~i 78 (129)
T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCPCNKEILEALGTQPKEQL 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcCcchHHHHHHHccCCcccc
Confidence 3455566667777777777776655544322222222222222233445777888888988888866666654
No 178
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.07 E-value=59 Score=28.53 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSL 861 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksL 861 (992)
||..||.|+..|...-.....++..++..++.--.--.+|..++..|---|..|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777776666777777777775444443
No 179
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=55.78 E-value=54 Score=30.76 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=24.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (992)
+|.|+|.|-....|+.+||++...+....+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 799999999999999999997766554443
No 180
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.42 E-value=21 Score=32.66 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
...+..+.++|+.+++.|.++....+.++++....++|..
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777766666666655543
No 181
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=54.35 E-value=11 Score=35.43 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...+|.|...+ +..=|-|.|.+|++.||..|+..|.+
T Consensus 88 r~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 88 RRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp SSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35799998854 56789999999999999999999875
No 182
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=54.19 E-value=72 Score=28.41 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=35.7
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
.|.+.|..|..++..|+.+-. ......-+.+|..++++|.++. .+|.+..-| |+.|.+.+.++-.||
T Consensus 27 ~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~------~ek~~l~~e-~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 27 FLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLT------NDKARVEVE-RDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHHHhhC
Confidence 344455555555544444311 1233334566777777776665 233344333 455777777776665
No 183
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=53.81 E-value=5.3 Score=47.60 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCcceeEEEeeccccccccCcCCCCCCCC-CcccccccccCCCceeeccCCC
Q 001953 581 GLNFTAIICLHKWVSSVDHSVCSSCHNPF-GFRRKRHNCYNCGLVFCKACSS 631 (992)
Q Consensus 581 G~~hT~aI~~~kwv~~~d~s~C~~C~~~F-sf~r~rh~C~~CG~v~C~sCss 631 (992)
+..|.+... .-.....|..|+..+ ++.++.++|..||..+|..|..
T Consensus 516 ~~~H~F~~~-----~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~ 562 (587)
T 3ky9_A 516 ANGHDFQMF-----SFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLG 562 (587)
T ss_dssp GGGCCEEEE-----CCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGG
T ss_pred ccCCceeEE-----eCCCCcccccccccccccccCCcCCCCCCCccchhhhh
Confidence 345655543 224456799999986 8899999999999999999976
No 184
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.71 E-value=11 Score=25.04 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=19.7
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELT 820 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (992)
..||++|..|.||+.-|+-++..|+
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4588999999999988877766554
No 185
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=53.11 E-value=2.1e+02 Score=29.60 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=12.3
Q ss_pred cEEEEEEcCCcEEEEeCC
Q 001953 254 RHAVLVTKQGEIFSWGEE 271 (992)
Q Consensus 254 ~hs~~Lt~dG~Vy~WG~N 271 (992)
.|++++ -+|.||.+|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 466555 48899999954
No 186
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=53.10 E-value=4 Score=31.91 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=33.7
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|...|.-.........||+.||..|........ ..|+-|...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----------~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----------YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----------CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----------CcCCCCCCcC
Confidence 4567999998875444444556799999999986543221 5688776544
No 187
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=52.83 E-value=13 Score=34.38 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=31.1
Q ss_pred CceEEEEE--cC------------------CCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 40 YQSFSLIY--ND------------------RSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 40 ~~~fs~i~--~~------------------~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
..||.|+. .. +++-|.|.+++|++.||..|+..|...
T Consensus 74 ~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~ 130 (134)
T 2y7b_A 74 RNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDI 130 (134)
T ss_dssp TTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 47999987 22 358999999999999999999998753
No 188
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=52.82 E-value=2e+02 Score=29.09 Aligned_cols=227 Identities=7% Similarity=-0.044 Sum_probs=116.2
Q ss_pred EEEEE--eCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCC
Q 001953 246 VHNIA--CGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 246 I~~Ia--~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n 323 (992)
|..|+ ....+.+.-..+|.|..|-...... ..+..........|..++......+....+|.|+.|-..
T Consensus 62 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~ 132 (313)
T 3odt_A 62 LNSVCYDSEKELLLFGGKDTMINGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG 132 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC
Confidence 44443 3455666677788888886433110 001111111234677777777788888889999999521
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEEEE---CcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeec
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC---GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETL 400 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Vac---G~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l 400 (992)
. ....+. .....|..++. .....+....+|.|+.|-.. . ....+...
T Consensus 133 -----~----------~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~----------~~~~~~~~ 182 (313)
T 3odt_A 133 -----S----------LVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTIKLWQND---K----------VIKTFSGI 182 (313)
T ss_dssp -----E----------EEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---E----------EEEEECSS
T ss_pred -----c----------EEEecc--cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---c----------eEEEEecc
Confidence 0 001111 12234545443 45566667788999999511 0 00111111
Q ss_pred cCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCc-
Q 001953 401 RGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHD- 479 (992)
Q Consensus 401 ~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~- 479 (992)
....|..++......++.. ..+|.|+.|-...... ...+. .....|..++....
T Consensus 183 ~~~~i~~~~~~~~~~~~~~-------------~~dg~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 183 HNDVVRHLAVVDDGHFISC-------------SNDGLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNG 237 (313)
T ss_dssp CSSCEEEEEEEETTEEEEE-------------ETTSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTS
T ss_pred CcccEEEEEEcCCCeEEEc-------------cCCCeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCC
Confidence 2224555544333333331 4558999996432110 01111 12344666654322
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCC-EEEEEEcCCcEEEEEcC
Q 001953 480 LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAY-HVAALTSTSKVYTWGKG 548 (992)
Q Consensus 480 htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~-Ht~aLt~~G~Vy~WG~N 548 (992)
..++...+|.|+.|-.... .....+. .....|..++.-.. ..++-..+|.|+.|=..
T Consensus 238 ~l~~~~~dg~v~iwd~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENG----------SLKQVIT--LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEETTSEEEEECTTTC----------CEEEEEE--CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred CEEEEecCCEEEEEECCCC----------ceeEEEe--ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 4556677888888864321 1111121 22345777776543 35666789999999654
No 189
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.51 E-value=45 Score=32.01 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
+..+.|.+++..+..++.+|++.......+++.++++++
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~ 113 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444444444444444443333
No 190
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=52.40 E-value=44 Score=28.86 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
++...|..|..+..+.+.++.++..++.+|.
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 191
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=51.91 E-value=2.5e+02 Score=30.11 Aligned_cols=219 Identities=10% Similarity=0.050 Sum_probs=112.6
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCC---CccCCCCCCCccccEEeeecCCCcEEEEEec-----CcEEEEEEcCCcEEEE
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESG---GRLGHGREADVSHPQLIEILSGVNVELVACG-----EYHTCAVTRSGDLYTW 320 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysW 320 (992)
++.+..+.+++|+.|.+|..-...- |+-..|.. ....+...++..|+.+... ..+.+++|++|.++..
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~----i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~ 129 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN----ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARF 129 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------CB----GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC----hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEE
Confidence 4567788999999999999975432 22222211 1122333356677777654 4578999999999988
Q ss_pred cCCCCCCCccCCCCCccccccceeccCCCCCcEEEEE--ECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEe
Q 001953 321 GDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYIS--CGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVE 398 (992)
Q Consensus 321 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Va--cG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~ 398 (992)
--..|.... +.| .......++..++.+. .+..+.+++|++|.++.+-..+.-.+|.+..-. +.+.
T Consensus 130 ~l~~~~~~r-~~G--------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~ 196 (312)
T 1suu_A 130 ESTDFKAVK-SRG--------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMK 196 (312)
T ss_dssp EGGGGCC-----C--------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCC
T ss_pred EHHHhhccC-CCc--------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEE
Confidence 655431111 111 1111122344565554 356788999999999999866544444321110 0011
Q ss_pred eccCCeEEEEEe--CCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEE--
Q 001953 399 TLRGLRTTRVSC--GVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQV-- 474 (992)
Q Consensus 399 ~l~~~~I~~Vac--G~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~I-- 474 (992)
...+..|+.+.. ...+.+++ +++|.+...--.++-..+.+...... .. +..-....++.+
T Consensus 197 L~~~d~vv~~~~v~~~~~l~~v--------------t~~G~~kr~~~~e~~~~~R~~kGv~~-~~-~~k~~~~~lv~~~~ 260 (312)
T 1suu_A 197 LKEGDLFVKVLSVKENPYLLIV--------------SENGYGKRLNMSKISELKRGATGYTS-YK-KSDKKAGSVVDAIA 260 (312)
T ss_dssp CCTTCCEEEEEECTTCSEEEEE--------------ETTSEEEEEEGGGSCBCCTTCCCEEC-SC-TTCTTTCSEEEEEE
T ss_pred eCCCCEEEEEEEECCCCeEEEE--------------ECCCceEEEEHHHhcccCCCCCCEEe-eE-ccCCCCCeEEEEEE
Confidence 112334544433 22333333 55577666655555444433222111 00 000011223322
Q ss_pred eecCcEEEEEeCCCcEEEEeCCCCCC
Q 001953 475 ACGHDLSVALTTSGHVYTMGSAAYGQ 500 (992)
Q Consensus 475 a~G~~htvaLT~dG~Vy~wG~N~~GQ 500 (992)
.......+++|..|.+.-.-.++.-.
T Consensus 261 ~~~~~~l~~~t~~g~~~r~~~~~i~~ 286 (312)
T 1suu_A 261 VSEDDEILLVSKRSKALRTVAGKVSE 286 (312)
T ss_dssp ECTTCEEEEEETTCEEEEEEGGGSCB
T ss_pred eCCCCEEEEEeCCCeEEEEEcccCCc
Confidence 23566778888888877666555433
No 192
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=51.72 E-value=83 Score=31.35 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=54.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---------------------HHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK---QLKT---------------------VTAIAEDEAEK 850 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~~~~~~ 850 (992)
-.+|+++.+.|+.+..+|+..++.|++..+..+.++..+++ ++++ +..+.-+-.|+
T Consensus 44 q~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Ae 123 (174)
T 2p22_A 44 QESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQ 123 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHH
Confidence 46779999999999999999999999999988888888887 4432 12234455555
Q ss_pred hhhhHHHHHHHHHHHHH
Q 001953 851 CKTANEVIKSLTVQLKK 867 (992)
Q Consensus 851 ~~~ake~iksLt~qlk~ 867 (992)
-.|-.+.|-.|..=|+.
T Consensus 124 d~AieDaIy~L~~al~~ 140 (174)
T 2p22_A 124 DYALTDTIECLSRMLHR 140 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 56677777777765553
No 193
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.32 E-value=99 Score=27.21 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhcC
Q 001953 860 SLTVQLKKMAEKS 872 (992)
Q Consensus 860 sLt~qlk~~~e~l 872 (992)
-|-.+|++|.++|
T Consensus 74 eLE~~l~el~~rl 86 (89)
T 3bas_A 74 HLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4556888888776
No 194
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=51.26 E-value=2.3e+02 Score=29.53 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=12.2
Q ss_pred cceeEEEecCCeEEEEec
Q 001953 360 LWHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 360 ~~hs~aLT~dG~Vy~wG~ 377 (992)
..|++++ -+++||.+|-
T Consensus 140 ~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred cceeEEE-ECCEEEEEeC
Confidence 3466655 5779999994
No 195
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.15 E-value=37 Score=29.43 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
++++...+++....|+++.++++++
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555444
No 196
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.82 E-value=1.2e+02 Score=26.20 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=31.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
++.-...+-|.|||..||-.|+++...--+-+.+|..++..+.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344555689999999999999998877777777766664443
No 197
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=49.91 E-value=26 Score=29.73 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
|+..|+++|+.|..++-+.-.+|--+.+-|=.-|...-+.|+++=.|=.-+..+-.+||.+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665555555555555555555555555555566654
No 198
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.90 E-value=1.2e+02 Score=29.39 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
....+.+..|++=+.+|.++++.-++..++.+. +....++..+.++..+.-+|.=-+=|+++..+|++..+-||-
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~----~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVE----YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 344555556666666666666666655555444 444444444455555544444445577777788888888873
No 199
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.80 E-value=1.1e+02 Score=30.13 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=34.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
||.+..+..-++.+...+.+|..+|...+..-..+.+.+...=+....|-.=+.-+.|.|+-|..
T Consensus 33 kK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ 97 (168)
T 3o0z_A 33 RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA 97 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555555555555666655555666666556666676554433
No 200
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.77 E-value=15 Score=30.06 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=36.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|+.. .....|.+|...|+..|..+... ..++..+.|..|..+.
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~------~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLP------EIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCS------SCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcC------cCCCCccCChhhcCch
Confidence 35568889863 35678999999999999875322 2446789999997653
No 201
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.40 E-value=16 Score=29.28 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=35.3
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
+...|..|+.. .....|..|...|+..|..+.+. ..++..+.|..|..
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~------~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLK------TIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCC------SCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcC------CCCCCceEChhhhC
Confidence 34568889874 35677999999999999875422 13467899999964
No 202
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=49.05 E-value=19 Score=29.93 Aligned_cols=50 Identities=22% Similarity=0.457 Sum_probs=36.7
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
.+...|..|+.. .....|..|...|+..|..+.+. ..++..+.|..|...
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~------~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLR------EIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCS------SCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcC------cCCCCCeECccccCc
Confidence 455679999864 35678999999999999875322 134678999999753
No 203
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.79 E-value=59 Score=41.58 Aligned_cols=8 Identities=38% Similarity=0.642 Sum_probs=4.0
Q ss_pred hhHHhhhc
Q 001953 652 DCFTKLKK 659 (992)
Q Consensus 652 ~C~~~l~~ 659 (992)
.|...|..
T Consensus 727 ~~~~il~~ 734 (1080)
T 2dfs_A 727 TCKNVLEK 734 (1080)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 45555544
No 204
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.55 E-value=15 Score=35.06 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHHHHHHHHHh
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK--------CKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ake~iksLt~qlk~~~ 869 (992)
...|+.+|+.++..-+.+...-+.+..+..+.+++.++-.-+||-| +-++++=.+-|..||+|.-
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666555555555555556666666666666655555543 2233444445555555543
No 205
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.22 E-value=1.2e+02 Score=29.40 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=36.6
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh-hHHHHHHHHHHHHHHhhcC
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKT-ANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-ake~iksLt~qlk~~~e~l 872 (992)
.+.+.-+.|..|+..|+.++..|....+.+..-++..+..+...-.. +.+...|.++ .++.|.-+-.+-..=||++
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544444444444444443333 3333333433 4455555555555555555
Q ss_pred C
Q 001953 873 P 873 (992)
Q Consensus 873 p 873 (992)
-
T Consensus 145 N 145 (152)
T 3a7p_A 145 N 145 (152)
T ss_dssp -
T ss_pred H
Confidence 4
No 206
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.03 E-value=50 Score=30.30 Aligned_cols=35 Identities=11% Similarity=0.308 Sum_probs=15.4
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEA 828 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (992)
.++.|+..-....+-+..-+.++.+|++....++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444444444444444444444444433333
No 207
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=47.97 E-value=3e+02 Score=29.84 Aligned_cols=216 Identities=11% Similarity=-0.019 Sum_probs=111.2
Q ss_pred EEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc-----ceeEEEecCCeEEEE
Q 001953 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL-----WHTAVVTSAGHLFTF 375 (992)
Q Consensus 301 Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~-----~hs~aLT~dG~Vy~w 375 (992)
.+....+.+++|+.|++|..--... -..+... .-..+...+. ..++++|+.+.... ...+++|.+|.+.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~l--p~~~r~~-~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDL--PEASRTA-RGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGS--CBCCSSS-CCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHC--cCCCccC-CCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 4567788899999999998753311 1111110 0111111222 34577888887654 467889999988877
Q ss_pred ecCCCCCCCCCCCcCCCcCeEEeec-cCCeEEEE--EeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCC--CCCCCC
Q 001953 376 GDGSFGALGHGDHISTSIPREVETL-RGLRTTRV--SCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDG--DKGRLG 450 (992)
Q Consensus 376 G~n~~GqLG~g~~~~~~~P~~V~~l-~~~~I~~V--acG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n--~~GQLG 450 (992)
-...|-.-.. .-.....+ .+..++.+ ..+..+.+++ |++|++|.+--. +--.+|
T Consensus 125 ~l~~~~~~~r-------~G~~~i~lke~D~lv~~~~~~~~d~ill~--------------T~~G~~~rf~~~~~eip~~g 183 (327)
T 3uc1_A 125 KLTDFDSNRS-------GGIVAVNLRDNDELVGAVLCSAGDDLLLV--------------SANGQSIRFSATDEALRPMG 183 (327)
T ss_dssp EGGGGCCCCS-------SCEESCBCCTTCCEEEEEEECTTCEEEEE--------------ETTSEEEEEECCTTTSCCCC
T ss_pred EHHHhhcccc-------CceEEEEECCCCEEEEEEEecCCCEEEEE--------------ECCCeEEEEECcccccCcCC
Confidence 6444321110 00000111 12233333 3344455555 777999998766 433333
Q ss_pred CCCCCCcccceeeccCCCCCeEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEE-
Q 001953 451 HGDKEPRLFPECVAPLIDENICQVACG--HDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVA- 527 (992)
Q Consensus 451 ~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia- 527 (992)
....... .+..-.+..|+.+..- ..+.+++|++|.+.-.--.+|-..+.+.. +..-..+. -.+..++.+.
T Consensus 184 r~a~Gv~----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-G~~~~~l~--~~~d~lv~~~~ 256 (327)
T 3uc1_A 184 RATSGVQ----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-GVLTVMYD--RRRGRLVGALI 256 (327)
T ss_dssp TTSBCEE----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-CEESSCCC--TTTCSEEEEEE
T ss_pred cCCCCee----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-cEEEEEec--CCCCeEEEEEE
Confidence 3222211 1222245667766543 34678889999877665444432221110 00000110 0122344433
Q ss_pred -EcCCEEEEEEcCCcEEEEEcC
Q 001953 528 -CGAYHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 528 -~G~~Ht~aLt~~G~Vy~WG~N 548 (992)
-+..+.+++|++|.+.-+-..
T Consensus 257 ~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 257 VDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp ECTTCEEEEEEGGGCEEEEEGG
T ss_pred eCCCccEEEEcCCCeEEEEehh
Confidence 356789999999998877443
No 208
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=47.93 E-value=2.3e+02 Score=28.52 Aligned_cols=186 Identities=10% Similarity=0.023 Sum_probs=97.6
Q ss_pred CCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEe---cCcEEEEEEcCCcEEEE
Q 001953 244 LDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVAC---GEYHTCAVTRSGDLYTW 320 (992)
Q Consensus 244 ~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~---G~~hs~aLT~dG~VysW 320 (992)
..|..|+......+....+|.|+.|-. + .+..........|..++. .....+....+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 467778887788888889999999951 1 111111112334555543 45677777889999999
Q ss_pred cCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc-ceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEee
Q 001953 321 GDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL-WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVET 399 (992)
Q Consensus 321 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~-~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~ 399 (992)
-... ....+. ......|..++.-. ...++...+|.|+.|-...... ...+..
T Consensus 171 d~~~---------------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------~~~~~~ 223 (313)
T 3odt_A 171 QNDK---------------VIKTFS-GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV-----------LRTYEG 223 (313)
T ss_dssp ETTE---------------EEEEEC-SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC
T ss_pred ecCc---------------eEEEEe-ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh-----------hhhhhc
Confidence 5220 001111 11233455554322 2355667889999996432110 011111
Q ss_pred ccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCc
Q 001953 400 LRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHD 479 (992)
Q Consensus 400 l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ 479 (992)
....|..++......++.. ..+|.|+.|--... + +..........|..++....
T Consensus 224 -~~~~i~~~~~~~~~~l~~~-------------~~dg~v~iwd~~~~-~-----------~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 224 -HESFVYCIKLLPNGDIVSC-------------GEDRTVRIWSKENG-S-----------LKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp -CSSCEEEEEECTTSCEEEE-------------ETTSEEEEECTTTC-C-----------EEEEEECSSSCEEEEEECTT
T ss_pred -CCceEEEEEEecCCCEEEE-------------ecCCEEEEEECCCC-c-----------eeEEEeccCceEEEEEEccC
Confidence 1234666666544333321 45699999953321 0 11111112335666654322
Q ss_pred -EEEEEeCCCcEEEEeCC
Q 001953 480 -LSVALTTSGHVYTMGSA 496 (992)
Q Consensus 480 -htvaLT~dG~Vy~wG~N 496 (992)
..++-..+|.|+.|-..
T Consensus 278 ~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 278 GDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp SCEEEEETTSCEEEEESC
T ss_pred CCEEEEeCCCcEEEEeCC
Confidence 35556778888888754
No 209
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=47.65 E-value=15 Score=33.73 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...+|.|+- ..+..=|-|.|.+|++.||..|+..|..
T Consensus 83 r~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 83 KKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp STTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 357999997 5578889999999999999999999875
No 210
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=47.49 E-value=17 Score=38.51 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.1
Q ss_pred CCceEEEEEc------CCCceeeeCCHHHHHHHHHHHHHHH
Q 001953 39 EYQSFSLIYN------DRSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 39 ~~~~fs~i~~------~~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
-..||.|++. .++.-|-|.|++|.+.||..||...
T Consensus 235 ~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 235 TDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp SSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 3579999982 2568899999999999999998654
No 211
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=47.34 E-value=95 Score=30.82 Aligned_cols=75 Identities=8% Similarity=0.178 Sum_probs=39.6
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL--KTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+.|++....|..++.+|..++..|.+.-.....+|+++.++= +.|--+|++-..+.|..+.+.. +.+||..+.-+
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~-~~a~l~~v~~~ 86 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA-SKAHMNSVLMG 86 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456666666666666666666666555555555555554432 2222244444444444444443 45566555544
No 212
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.22 E-value=55 Score=46.50 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRA---QVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (992)
Q Consensus 805 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (992)
|+-=+.||+. ||+.|+++.+.++.+|++.+++.++++....
T Consensus 1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443 7888888888888888887777776665443
No 213
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.92 E-value=42 Score=30.14 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA----------------------EDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ake~iksLt 862 (992)
+..+.++|+.+.+.+.++.+..+.+++.....++|...+- ..-..+-+..++.|+.|.
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777776666654321 111233344566777777
Q ss_pred HHHHHHhhc
Q 001953 863 VQLKKMAEK 871 (992)
Q Consensus 863 ~qlk~~~e~ 871 (992)
.|++.+-++
T Consensus 86 ~~~~~~~~~ 94 (107)
T 1fxk_A 86 RQEERVMKK 94 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 214
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.60 E-value=1.4e+02 Score=25.72 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
...|.+++.+.++.++.|++- +.||..-+++|++.+.....|-+.+... |..|....+||.+-
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT----~~EL~~G~~KL~~mi~~l~~E~~~l~~n---i~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRT----EEDLKKGHQKLEEMVTRLDQEVAEVDKN---IELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 346788888888888888764 5678899999999998888887766554 55566666776543
No 215
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=45.93 E-value=92 Score=32.72 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=32.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
.+.|.+.-+.+..++..|..++.+++.+.+..+.++...+..+.+.-....+.-+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666655555443333333
No 216
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.89 E-value=35 Score=38.67 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
+..|+.++++|++++++++.+++++++.++++-....+|-. .-|.|-++|.||..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~rr~l~n~~~elkgn 60 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET-------VRRTLHNELQELRGN 60 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCCC
Confidence 44455555666666666666666666666666555544443 345678888888776
No 217
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.86 E-value=15 Score=30.02 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAEL 830 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (992)
.++|..|.++...|..+......|+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 218
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.00 E-value=20 Score=31.85 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=38.6
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|+..-. ......|-.|...|+..|..+.+. .+++..++|..|...-
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~------~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLP------EIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCS------SCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcc------cCCCCCcCCccCcCcc
Confidence 3456889987542 345778999999999999875432 2456789999998653
No 219
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.63 E-value=41 Score=38.05 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
.|.+|+..|+.+.++|++..+..+.++++.++++.+.-.+-
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 47 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR 47 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555544333
No 220
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.11 E-value=45 Score=37.83 Aligned_cols=57 Identities=32% Similarity=0.432 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEK 871 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~ 871 (992)
..+.|.+|+..|+.++++|.++.+++.++++..++++.+ +|.. -|-|-++|.||.+.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~------~~~~--------rr~l~n~~~~l~gn 60 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ------SNME--------RKELHNTVMDLRDN 60 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHhCCC
Confidence 346788888888888888888888888877777766532 3333 35678888888776
No 221
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=44.01 E-value=23 Score=29.19 Aligned_cols=57 Identities=16% Similarity=0.459 Sum_probs=40.0
Q ss_pred ccCcCCCCCCCCC-cccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fs-f~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|+..+. -......|..|...|+..|..+.+....+ .++..++|..|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~---~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVI---DSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHH---HSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccccccc---CCCCCEECCCCcCcc
Confidence 3457999998754 33567889999999999998864322111 135679999997643
No 222
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.99 E-value=89 Score=30.49 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 828 AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
.++.....+++.....+.+|.+++..|-...+-+..+|-+++
T Consensus 51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666677777777777655555555555544
No 223
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=43.69 E-value=48 Score=29.45 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
+.-.+|++++.+|++.|..+--..+.|+-+.+|-++
T Consensus 72 ~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 72 NENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334567777777777777777777777666666544
No 224
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.28 E-value=1.1e+02 Score=28.34 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
|++|+.+++.|.++.+..++|++++.+..+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444555555555555555555555444443
No 225
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.26 E-value=3.5e+02 Score=29.24 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=70.8
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec-----CcEEEEEEcCCcEEEEcCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG-----EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysWG~n 323 (992)
++.+..+.+++|+.|++|..-...--..|... .-......+...++..|+.+..- ..+.+++|++|.+.-.-..
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 56678899999999999999764422222110 00011112222345677765443 2368889999988766543
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEE--EECcceeEEEecCCeEEEEecCCCCCCC
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYI--SCGLWHTAVVTSAGHLFTFGDGSFGALG 384 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~V--acG~~hs~aLT~dG~Vy~wG~n~~GqLG 384 (992)
.|....-+.| .......++..++.+ ..+..+.+++|++|+++.|-.+..-.+|
T Consensus 125 e~~~~~r~~G--------~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~g 179 (323)
T 1wp5_A 125 HYKAQRYSKP--------LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVG 179 (323)
T ss_dssp GGCCSCCSSC--------EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HhhhccccCc--------eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 3211000011 011111223344443 3467789999999999999866544444
No 226
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=43.20 E-value=2.6e+02 Score=27.75 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=12.5
Q ss_pred cEEEEEeCCCcEEEEeCC
Q 001953 479 DLSVALTTSGHVYTMGSA 496 (992)
Q Consensus 479 ~htvaLT~dG~Vy~wG~N 496 (992)
-..++++.+|.+|+....
T Consensus 194 p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 194 PWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp EEEEEECTTCCEEEEETT
T ss_pred ceEEEECCCCCEEEEECC
Confidence 355777888888876643
No 227
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=43.02 E-value=24 Score=35.35 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.9
Q ss_pred CCCCCCCceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 34 PRPEKEYQSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 34 ~~~~~~~~~fs~i~--~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+.++.++|=|.= |..++=|-|+|.+||+.|+..|..=|.
T Consensus 135 ~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 135 TPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp CSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred cCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 44567889999988 778999999999999999998876553
No 228
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.02 E-value=18 Score=38.14 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 001953 804 SLNQEIIKLRAQVEEL---TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMA 869 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~ 869 (992)
.|.+|+..|+.++... .+.... +..++.+++++..+.+.-..-++-.|.|++-|..|..||+.|.
T Consensus 28 ~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 28 QLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp ------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666655433 222222 3344555555555554444445666778888888888888864
No 229
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=42.95 E-value=1.4e+02 Score=29.19 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
-+...++|.+--.++..+-+-+++-+-+..++|+.....---|.++|+-.+++|...+..+-.||
T Consensus 76 rL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kL 140 (201)
T 3u0c_A 76 KITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRL 140 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666666666666667888888899998888888999999999999998777665553
No 230
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.59 E-value=56 Score=26.07 Aligned_cols=37 Identities=3% Similarity=0.127 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
.|.-+|+.|-.||..|...-.....+++.++.....|
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444555554444433
No 231
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=42.46 E-value=35 Score=31.49 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 800 QMNDSLNQEIIKLRAQVEEL--TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.=.....+|...+++++..+ ...-+.-.++|+++++-+.+++-..- +=..|.+-+.|+.|+++|.++..+|-|
T Consensus 35 ~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~~l~P 109 (111)
T 2l3l_A 35 FFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRRGLQP 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344455555555555544 44456667788888888877764443 235688899999999999999888744
No 232
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.24 E-value=12 Score=31.88 Aligned_cols=55 Identities=22% Similarity=0.484 Sum_probs=38.5
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
...|..|+.... ....-.|-.|...|+..|...... + .....++|+.|..++.+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~-----~-~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAA-----P-PEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSC-----C-CSSSCCCCTTTHHHHCSC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCcc-----C-CCCCCEEChhccCchhhc
Confidence 345888887753 445677999999999999763211 1 123579999999988764
No 233
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=42.01 E-value=19 Score=36.06 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=36.6
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|+.. .....|..|...|+..|..+... ..++..+.|..|....
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~------~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLT------NFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCC------CCCCCCEECccccCcc
Confidence 34568999864 34678999999999999764322 2456789999998643
No 234
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.85 E-value=74 Score=45.27 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=35.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA-------IAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ake~iksLt~ 863 (992)
+|+.-+.+++|+.+.+++.+.++++....+.+|++++++.+++++ .+..-..|...|...|..|..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444445555555555555555555555555555555444443 233334556677888888776
No 235
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.80 E-value=1.9e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=30.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
||.-.|.....+..++.+++.+.+++...+.++..++++++-
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444445555666677777888888888888888888888773
No 236
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.55 E-value=55 Score=29.10 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (992)
.|..|+..|+.|++.|.+.-..-..|+..++++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333344433333
No 237
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.51 E-value=68 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~ 822 (992)
|.++|..|..+...|...
T Consensus 28 Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 238
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.18 E-value=1.9e+02 Score=29.09 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
.|..|+..|+...+.|+.++...+..-..+..+..-+.+-..|.-.|...|-|-+=.|...|.+
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555566666777777888888888888888887765
No 239
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=40.97 E-value=28 Score=32.98 Aligned_cols=37 Identities=8% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~~~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
...+|.||...++.=|.|.|++|.+.||..|...+..
T Consensus 75 ~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~~ 111 (126)
T 1wi1_A 75 GRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQ 111 (126)
T ss_dssp CSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3468999985567889999999999999999987753
No 240
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.96 E-value=2.2e+02 Score=28.05 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=23.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEA 828 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (992)
...|....+.|.+|+..|++|+..=+.-+.+.+.
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999987655544444444
No 241
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.82 E-value=2e+02 Score=25.74 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=32.2
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
||.-.|.....+..++.+++.+.+++...+.++..++++++-+
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l 56 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555566677777788888888888888888888888733
No 242
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.60 E-value=1.1e+02 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=18.6
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001953 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEH 825 (992)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (992)
-++.|++..+.|..|..+|+.+++.|+.+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666555555433
No 243
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.04 E-value=1.2e+02 Score=34.79 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=13.8
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELT 820 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (992)
.|.|-+..+.+..+|+.|+..+++|.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHh
Confidence 45555555555555555555544443
No 244
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.77 E-value=2.2e+02 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=13.6
Q ss_pred cchHhhhhhHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVE 817 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (992)
..|...+..|.+|...|+.|++
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777766666554
No 245
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=39.69 E-value=1.1e+02 Score=35.04 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 815 QVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
|+.++...-.+.+.+|++.++.+++.+
T Consensus 136 Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 136 QRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333434334444444444444444444
No 246
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.68 E-value=1.7e+02 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=21.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.....++|+..|.+|+.+|+...+..+.|..-+=.||+.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666666555555555544445544
No 247
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.49 E-value=1.5e+02 Score=29.85 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=38.1
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ 863 (992)
..+..|...|..|++++.....+++.|+++.+..+.++...+.++ +.|.+-...-++.+.-||-
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~-------~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT-------SQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-------HHHHHhhhHHHHHHHHccC
Confidence 456666666666666666655566665555554444443333222 3455555677888888885
No 248
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.37 E-value=69 Score=26.05 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEA 828 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~ 828 (992)
+..|+.+|+.|+..-.....
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 249
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.99 E-value=82 Score=34.42 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=36.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK----------QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
...-+.+..++.+++++++.++.+.+....++++.++ .++++-+....-.+..++++.-|+.+.++|+..
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555544444444432 233333333333344555666667777777665
Q ss_pred hhcC
Q 001953 869 AEKS 872 (992)
Q Consensus 869 ~e~l 872 (992)
...|
T Consensus 149 ~~~l 152 (369)
T 4dk0_A 149 ETNL 152 (369)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5443
No 250
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=38.65 E-value=62 Score=23.13 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+|..+|++|..+-...+.|+.+.++-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45777888888887777777777766543
No 251
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.45 E-value=31 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=19.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTS 821 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (992)
+|.|.-.|+.|+|.+.-|+.++.+|+|
T Consensus 2 idalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhcC
Confidence 456677788888887777777776653
No 252
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.41 E-value=7.4 Score=32.31 Aligned_cols=52 Identities=21% Similarity=0.516 Sum_probs=34.4
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|...|.-.. -..||+.||..|...... .......|+.|...+...
T Consensus 19 ~~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~~~-------~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKPV----TIDCGHNFCLKCITQIGE-------TSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSEE----ECTTCCEEEHHHHHHHCS-------SSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCeE----EcCCCChhhHHHHHHHHH-------cCCCCCCCCCCCCcCCcc
Confidence 3456999988775322 127999999999764421 113456799998776553
No 253
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=38.37 E-value=23 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCceEEEEEcC-------CCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 39 EYQSFSLIYND-------RSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 39 ~~~~fs~i~~~-------~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
....|.|.... +++=|-|.+++|++.||..|+.+++
T Consensus 76 ~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~ 118 (120)
T 4a6h_A 76 SDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTS 118 (120)
T ss_dssp -CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 56789888833 5889999999999999999998753
No 254
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=38.14 E-value=65 Score=33.95 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCCCC
Q 001953 849 EKCKTANEVIKSLTVQLKKMAEKSPEGA 876 (992)
Q Consensus 849 ~~~~~ake~iksLt~qlk~~~e~lp~~~ 876 (992)
+-++.|++-|+.+..++++|++.+|+..
T Consensus 71 ~~~~eA~~~l~~i~~~~~~L~~~l~~~~ 98 (249)
T 3axj_A 71 AACGLARKQVELCAQKYQKLAELVPAGQ 98 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4577888889999999999999998754
No 255
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.98 E-value=37 Score=24.43 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
-+.+|..+|++|..+-...+.|+.++++-+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356777778877777777777776666544
No 256
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=37.92 E-value=33 Score=36.46 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 39 ~~~~fs~i~-~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
...||.|+. ..++.=|.|.|++|++.||..|+..+...
T Consensus 88 k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~ 126 (263)
T 3a8p_A 88 KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL 126 (263)
T ss_dssp CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 468999999 67899999999999999999999988753
No 257
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=37.78 E-value=16 Score=41.06 Aligned_cols=62 Identities=15% Similarity=0.347 Sum_probs=42.6
Q ss_pred eeEeeCCCc---ce-eeccceeeeccCccCcccccCCCCCCCCceEEEEE----cCCCceeeeCCHHHHHHHHHHHHHHH
Q 001953 2 LIWYSGKEE---RQ-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY----NDRSLDLICKDKDEAEVWLVGLKALI 73 (992)
Q Consensus 2 l~w~~~~k~---k~-~~~~~v~~v~~G~~t~~f~~~~~~~~~~~~fs~i~----~~~sLdLi~~~~~ea~~W~~gL~~l~ 73 (992)
|.+|.+..+ +. |.|+++..+.. . .......+|-|.| +.|++=|.|.|.+|++-||..|++..
T Consensus 176 L~Yy~~~~~~~p~g~I~L~~~~~~~~---~-------~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 176 LKYFNRNDAKEPKAVMKIEHLNATFQ---P-------AKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEEEC-----CCSEEEEGGGEEEEEC---H-------HHHTSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCccCcccEEEeeccEEEEc---c-------cccCCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 455655432 22 89998877761 1 0112457999998 34799999999999999999998764
No 258
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.70 E-value=1.6e+02 Score=34.16 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=50.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTA----------NEVIKSLTVQ 864 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----------ke~iksLt~q 864 (992)
.++|++.-..|++||..--++++.|+...+.|-.||||++.-|.-.+ ..||.. .+--.-+..|
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi-------rsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI-------RSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccccccchheeecchHHHHHHHHH
Confidence 57899999999999988778999999999999999988776655443 234433 4445555556
Q ss_pred HHHHhhc
Q 001953 865 LKKMAEK 871 (992)
Q Consensus 865 lk~~~e~ 871 (992)
|..+.-+
T Consensus 185 LeQv~a~ 191 (562)
T 3ghg_A 185 LEQVIAK 191 (562)
T ss_dssp HHHHHTT
T ss_pred HHHHhhc
Confidence 6665544
No 259
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=37.60 E-value=2.3e+02 Score=27.54 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+.++|..|+++...|+.++...+.+++.-.+.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~ 98 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNT 98 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444333
No 260
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.46 E-value=48 Score=22.54 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=15.1
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
|.-.-..|+.|-++|+++|++|-.+
T Consensus 4 lnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777777777766543
No 261
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=37.44 E-value=1.3e+02 Score=31.15 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=49.7
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL-KTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~l 872 (992)
.+-+++-+-.|..++.+|..++..|...=.....+|+++.|+= .++..+.+.|.-+.|-++.=+-.+.+||..++-+|
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rl 87 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888877777777777776652 23334444444444444333334455666666554
No 262
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.39 E-value=38 Score=24.30 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+|..+|++|.++-...+.|+.+++.-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667777777777666666666665543
No 263
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.39 E-value=21 Score=36.51 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=36.7
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
+...|..|+.. .....|..|...|+..|..+... ..++..+.|+.|....
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~------~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLL------SFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCS------SCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCC------CCCCCCEEeCceeCcc
Confidence 45679999864 24678999999999999864322 2456789999997543
No 264
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=37.32 E-value=4.1e+02 Score=28.35 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=75.4
Q ss_pred EEecCcEEEEE---EcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEE
Q 001953 301 VACGEYHTCAV---TRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFT 374 (992)
Q Consensus 301 Va~G~~hs~aL---T~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~ 374 (992)
+++...+..++ ..+|.|+.|-... .|.+.. .. ..+. -....|..++.. ....+.-..||.|..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~--~~~~~~------~~-~~~~--~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGK--TGRVDK------NV-PLVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTC--CEECCT------TC-CCBC--CCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECcc--CCCCCC------CC-ceEe--cCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 45555555544 4578999996542 232210 00 0111 123357777664 344455567999999
Q ss_pred EecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCCce-EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCC
Q 001953 375 FGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWH-TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGD 453 (992)
Q Consensus 375 wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~h-t~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~ 453 (992)
|-....+... ....|......-...|..++..... .++++. ..||.|+.|--... +
T Consensus 109 w~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~------------~~dg~i~iwd~~~~-~----- 165 (402)
T 2aq5_A 109 WEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSA------------GCDNVILVWDVGTG-A----- 165 (402)
T ss_dssp EECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEE------------ETTSCEEEEETTTT-E-----
T ss_pred EEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEE------------cCCCEEEEEECCCC-C-----
Confidence 9754432211 0111211111122357777665543 233321 45589999954321 1
Q ss_pred CCCcccceeec-cCCCCCeEEEeec--CcEEEEEeCCCcEEEEeCC
Q 001953 454 KEPRLFPECVA-PLIDENICQVACG--HDLSVALTTSGHVYTMGSA 496 (992)
Q Consensus 454 ~~~~~~P~~V~-~l~~~~I~~Ia~G--~~htvaLT~dG~Vy~wG~N 496 (992)
....+. ......|..++.. ....+.-..+|.|+.|--.
T Consensus 166 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 166 -----AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp -----EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred -----ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 011110 1123445555542 3344455678888888643
No 265
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.29 E-value=51 Score=23.56 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+|..+|++|.++-...+.|+.+++.-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35666777777777666666666665433
No 266
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.06 E-value=22 Score=31.55 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=37.1
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
.....|..|+.. ....-|..|...|+..|..+... .+++..+.|..|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~------~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCC------CCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCC------CCcCCCcCCccccCC
Confidence 345679999864 24677999999999999865322 245678999999754
No 267
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.80 E-value=1.1e+02 Score=34.99 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001953 831 ERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQL 865 (992)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ql 865 (992)
+++++.+++......|--++-+.|+.-=..|+.||
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 452 ARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 34444444444444443444444444333444443
No 268
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.73 E-value=71 Score=28.18 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=2.6
Q ss_pred HHHHhhcCCC
Q 001953 865 LKKMAEKSPE 874 (992)
Q Consensus 865 lk~~~e~lp~ 874 (992)
|+.|--.+|+
T Consensus 69 Lr~ll~~~p~ 78 (87)
T 1hjb_A 69 LRNLFKQLPE 78 (87)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHCcH
Confidence 3333333443
No 269
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.66 E-value=1.1e+02 Score=28.69 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELE 831 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (992)
+.+--.++||.+|++++.+|+++.+.+..-++
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567888888888888877765554433
No 270
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=36.61 E-value=2.5e+02 Score=25.62 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHh
Q 001953 855 NEVIKSLTVQLKKMA 869 (992)
Q Consensus 855 ke~iksLt~qlk~~~ 869 (992)
+-...+|+.+|+++.
T Consensus 94 ~~q~~~L~~kf~e~m 108 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVM 108 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555443
No 271
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.56 E-value=1.8e+02 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEE 818 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~ 818 (992)
|..|++.|..|+.+++.
T Consensus 16 N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 16 NKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 272
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.22 E-value=9.3 Score=32.45 Aligned_cols=55 Identities=24% Similarity=0.536 Sum_probs=35.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|...|.-.. -..||+.||..|.......... ......|+.|...+...
T Consensus 18 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~----~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPL----SLDCGHSFCQACLTANHKKSML----DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCB----CCSSSCCBCTTHHHHHHHHHHH----TTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCce----eCCCCCHHHHHHHHHHHHHhhc----CCCCCcCCCCCCccCHH
Confidence 3456999988775322 1369999999998754322111 12356799998877653
No 273
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.89 E-value=1.7e+02 Score=26.33 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+..++..++.++..|.........+++.+++.+
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 274
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.68 E-value=83 Score=27.17 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=37.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+.|+++.+-|+.==+||..-++.|.+.....+..|+.++++.+|.-
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888877754
No 275
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.62 E-value=1.1e+02 Score=34.50 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~ 824 (992)
+.+||+.+.+.++.|.+.|+
T Consensus 46 ~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 46 LLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554443
No 276
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.34 E-value=2.4e+02 Score=25.11 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=15.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (992)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (992)
++....|.+|+..|.++-..+....+..+.+.++..++
T Consensus 17 ~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 17 ALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 33333444444444444444444443344444333333
No 277
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=35.14 E-value=1.3e+02 Score=30.97 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+.|.+++.+|++++.+|+.+.....++.+-++|..+.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655555555555555555554443
No 278
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=35.05 E-value=4e+02 Score=27.50 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=19.6
Q ss_pred ecCCCcEEEEEec-CcEEEEEEcCCc-EEEEcC
Q 001953 292 ILSGVNVELVACG-EYHTCAVTRSGD-LYTWGD 322 (992)
Q Consensus 292 ~l~~~~I~~Va~G-~~hs~aLT~dG~-VysWG~ 322 (992)
.+.+-++.-..++ ....++++.+|+ |+.|+.
T Consensus 84 ~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 84 ILPDGNALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp ECTTSCEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 3445566655666 566777788887 456653
No 279
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=35.04 E-value=5.3e+02 Score=28.93 Aligned_cols=55 Identities=7% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeec--CCCcEEEEEecCcEEEEEEcCCcEEEEcC
Q 001953 252 GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEIL--SGVNVELVACGEYHTCAVTRSGDLYTWGD 322 (992)
Q Consensus 252 G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 322 (992)
...+.+..+.+|.|+.|-... ...+..+ ....|..++. .. .+....+|.|..|-.
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGH--------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSS 364 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTE--------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTT
T ss_pred CCCeEEEEECCCCEEEEECCC--------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEc
Confidence 566777788899999996432 1111111 2346777777 66 666678899998843
No 280
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=35.02 E-value=22 Score=27.51 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=32.2
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
+...|..|...|...........||+.||..|-..... ....|+-|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~----------~~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG----------SHSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT----------TCCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH----------cCCcCcCCCCE
Confidence 45679999988865443333346999999999754321 13468888654
No 281
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.39 E-value=7.1 Score=34.50 Aligned_cols=56 Identities=23% Similarity=0.644 Sum_probs=38.8
Q ss_pred cccccCcCCCCCCCCCcccc---cccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 595 SSVDHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 595 ~~~d~s~C~~C~~~Fsf~r~---rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
......+|..|+...+++.. --.|..|+..+|..|...- ..+....|..|...+++
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE---------rkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE---------RREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH---------HHTSCSSCTTTCCCCCC
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH---------HhccCccccccCCcccc
Confidence 33445689999988776654 3458888888888887632 23455678888877765
No 282
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.39 E-value=39 Score=24.36 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+|..+|++|.++-...+.|+.++++-+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45677778887777777777777766543
No 283
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=34.37 E-value=1.1e+02 Score=27.42 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 843 IAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 843 ~~~~~~~~~~~ake~iksLt~qlk 866 (992)
..++|.+++++..|-|-.|.+|..
T Consensus 27 ~lke~~~q~~~~~E~i~vLk~Qv~ 50 (94)
T 3jsv_C 27 KLKEEAEQHKIVMETVPVLKAQAD 50 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777754
No 284
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.32 E-value=9.3 Score=32.85 Aligned_cols=55 Identities=18% Similarity=0.394 Sum_probs=36.3
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|.-....---..||+.||..|........ .....|+.|...+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-------INGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-------SSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-------CCCcCCCCCCCcccc
Confidence 3456999998886543222334799999999987543221 235679999876554
No 285
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=34.02 E-value=31 Score=38.51 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=33.8
Q ss_pred CceEEEEEcC--CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 40 YQSFSLIYND--RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 40 ~~~fs~i~~~--~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
..||.|+..+ +++=|-|.|++|.+.||..|+..+.+..
T Consensus 339 ~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~ 378 (385)
T 2q13_A 339 RYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIY 378 (385)
T ss_dssp SSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhc
Confidence 4799999965 8999999999999999999999987643
No 286
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=34.00 E-value=4e+02 Score=27.30 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=11.8
Q ss_pred cEEEEEEcCCcEEEEeC
Q 001953 254 RHAVLVTKQGEIFSWGE 270 (992)
Q Consensus 254 ~hs~~Lt~dG~Vy~WG~ 270 (992)
.|++++. ++.||.+|-
T Consensus 54 ~~~~~~~-~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVYM-AGLVFAVGG 69 (302)
T ss_dssp SCEEEEE-TTEEEEESC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4565544 899999995
No 287
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.88 E-value=2.9e+02 Score=25.69 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=43.4
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQL 865 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ql 865 (992)
.|+=....+.|..||..|+.+++.++..++..-.+++.---.++--.+..+-+..+...-.|.++.-.+.|
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555678889999999999999998877666555555444444444444444333333445555433333
No 288
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.71 E-value=17 Score=29.80 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=35.4
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
+...|..|...+.- -...||+.||..|..... +....|+-|...+....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~----------~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILPCAHSFCQKCIDKWS----------DRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSS----------CCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC-----cccCCCCcccHHHHHHHH----------HCcCcCCCcCCcccCCC
Confidence 45579999887654 335699999999976432 13567999998887654
No 289
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.61 E-value=41 Score=27.56 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001953 809 IIKLRAQ 815 (992)
Q Consensus 809 ~~~~~~~ 815 (992)
|..|.++
T Consensus 31 v~~L~~~ 37 (62)
T 1jnm_A 31 VKTLKAQ 37 (62)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 290
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=33.60 E-value=97 Score=26.36 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 001953 853 TANEVIKSLTVQLKKMAE 870 (992)
Q Consensus 853 ~ake~iksLt~qlk~~~e 870 (992)
..|-++..|.-.|-||.|
T Consensus 43 Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 43 NLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 345555555555555543
No 291
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.57 E-value=1.4e+02 Score=21.95 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 820 TSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (992)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (992)
.|..+++.+|++.+++.++-|-+...=|-+
T Consensus 12 iqeleernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 12 IQELEERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455677777777777666554444433
No 292
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=33.34 E-value=8 Score=34.67 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=35.1
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|. ...-|..||+.||..|-....... ...|+.|...+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ---------RAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT---------CSBCTTTCCBCCG
T ss_pred CCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC---------cCCCCCCCCcCCH
Confidence 3456999998774 233457899999999987543221 1679999887754
No 293
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=32.93 E-value=22 Score=29.63 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=34.7
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
....|..|+.. ....-|..|...|+..|..+.+. ..++..+.|..|..
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~------~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGT------SRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTC------CCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccC------cCCCCCEECccccC
Confidence 34568899853 34677999999999999764322 24566799999954
No 294
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.92 E-value=92 Score=27.21 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (992)
.|+.+|..|+=+-|.+.-+++..+++-++.
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444443
No 295
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.69 E-value=33 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEH 825 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~ 825 (992)
.|..+|..|++|...|.++++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 296
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.65 E-value=4.8e+02 Score=27.81 Aligned_cols=261 Identities=13% Similarity=0.074 Sum_probs=129.2
Q ss_pred CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEE--EEecCcEEEEEEcCCcEEEEcCCCCCCCcc
Q 001953 253 ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVEL--VACGEYHTCAVTRSGDLYTWGDGTYNSGLL 330 (992)
Q Consensus 253 ~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~--Va~G~~hs~aLT~dG~VysWG~n~~~~GqL 330 (992)
....+++|.+|.|--.-...+.....+.. -..-+..-++..+.. ++.+..+.+++|+.|.+|..-.... -..
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i--p~~ 81 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI--KDS 81 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS--CC-
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC--CCC
Confidence 34577899999887765443322211100 000111112223333 4567789999999999998854311 111
Q ss_pred CCCCCccccccceeccCCCCCcEEEEEEC-----cceeEEEecCCeEEEEecCCCCCC-CCCCCcCCCcCeEEeec-cCC
Q 001953 331 GHGSKVSCWIPRKVSGNLDGIHLSYISCG-----LWHTAVVTSAGHLFTFGDGSFGAL-GHGDHISTSIPREVETL-RGL 403 (992)
Q Consensus 331 G~g~~~~~~~P~~v~~~l~~~~Iv~VacG-----~~hs~aLT~dG~Vy~wG~n~~GqL-G~g~~~~~~~P~~V~~l-~~~ 403 (992)
|.... -..+...+. ..++..|+.+... ..+.+++|++|.++..-...+-.. +.|- ....+ .+.
T Consensus 82 ~r~~~-G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~--------~~i~L~~~d 151 (312)
T 1suu_A 82 SRASK-GQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGV--------IVIKLNDKD 151 (312)
T ss_dssp -------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CE--------ECBCCCTTC
T ss_pred CccCC-CcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcE--------EEEecCCCC
Confidence 11110 011112222 3456778877654 356889999999998875544111 1110 01111 133
Q ss_pred eEEEEEe--CCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEee--cCc
Q 001953 404 RTTRVSC--GVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVAC--GHD 479 (992)
Q Consensus 404 ~I~~Vac--G~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~ 479 (992)
.++.+.. +..+.+++ |++|.++-+--.+.-..|.+...... +....+..|+.+.. ...
T Consensus 152 ~lv~~~~~~~~~~i~l~--------------T~~G~~~r~~~~ev~~~gR~~~Gv~~----i~L~~~d~vv~~~~v~~~~ 213 (312)
T 1suu_A 152 FVTSAEIVFKDEKVICL--------------SKKGSAFIFNSRDVRLTNRGTQGVCG----MKLKEGDLFVKVLSVKENP 213 (312)
T ss_dssp CEEEEEEECTTCEEEEE--------------ETTSEEEEEEGGGSCBCCTTBCCEEC----CCCCTTCCEEEEEECTTCS
T ss_pred EEEEEEEeCCCCEEEEE--------------eCCCcEEEEEHHHccccCCCCCCeEe----EEeCCCCEEEEEEEECCCC
Confidence 4444433 34444444 66799888876654333332211111 11112344554432 345
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEE--EEcCCEEEEEEcCCcEEEEEcCC
Q 001953 480 LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEV--ACGAYHVAALTSTSKVYTWGKGA 549 (992)
Q Consensus 480 htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--a~G~~Ht~aLt~~G~Vy~WG~N~ 549 (992)
+.++++++|.+...--.++-..+.+..-..... +. ......+..+ .......++++..|.+.-.-.+.
T Consensus 214 ~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~-~~-k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 214 YLLIVSENGYGKRLNMSKISELKRGATGYTSYK-KS-DKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECSC-TT-CTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred eEEEEECCCceEEEEHHHhcccCCCCCCEEeeE-cc-CCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 678889999888877776654443322111111 10 0112334332 23556778888888776654444
No 297
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.63 E-value=2.4e+02 Score=29.43 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=69.3
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec--CcEEEEEEcCCcEEEEcCCCCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG--EYHTCAVTRSGDLYTWGDGTYN 326 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysWG~n~~~ 326 (992)
++.+..+.+++|+.|++|..-...-- .+.. .-......+....+..|+.+... ..+.+++|++|.+.-.-...|.
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp-~~r~--~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLP-SARG--QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSC-CSSS--CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCC-CcCC--CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 45567789999999999999764420 0110 00001112333346678887663 4567888999988766443220
Q ss_pred CCccCCCCCccccccceeccCCCCCcEEEE-E--ECcceeEEEecCCeEEEEecCCCCCCCC
Q 001953 327 SGLLGHGSKVSCWIPRKVSGNLDGIHLSYI-S--CGLWHTAVVTSAGHLFTFGDGSFGALGH 385 (992)
Q Consensus 327 ~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~V-a--cG~~hs~aLT~dG~Vy~wG~n~~GqLG~ 385 (992)
.+ . .. -..+...-++..++.+ . .+..+.+++|++|++.-|-.++.-.+|.
T Consensus 117 -~~---~--r~---G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 117 -AR---N--RA---GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp -CC---S--TT---CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred -cc---C--cC---ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 00 0 00 0001111122233332 2 3667899999999999998765544443
No 298
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=32.56 E-value=1.7e+02 Score=28.11 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=55.3
Q ss_pred ccccchHhhhhhHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhh-----------HHHH
Q 001953 793 VTIDDSKQMNDSLN-QEIIKLRAQVEELTSKSEHLE--AELERTSKQLKTVTAIAEDEAEKCKTA-----------NEVI 858 (992)
Q Consensus 793 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a-----------ke~i 858 (992)
+-.+.+.+..+... +|+++|-.++.+.-++....- ..+.++++-+++-+..|.+.+=+.+.. =.+|
T Consensus 26 ~F~~~l~~~~~~~~~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl~~~v~~~~~l~~~~~~~r~gr~r~y~iV 105 (145)
T 2qup_A 26 SFSEVMGKQRDEKAYERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEERRGFNRRGRTKIYKIV 105 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHheehhhcccCCCCCeeEEeeh
Confidence 33444555444444 667777777776665544332 677889999988888887766555443 2679
Q ss_pred HHHHHHHHHHhhcCC
Q 001953 859 KSLTVQLKKMAEKSP 873 (992)
Q Consensus 859 ksLt~qlk~~~e~lp 873 (992)
|-+...|-+|++.|-
T Consensus 106 ~~ID~kL~eLt~~ll 120 (145)
T 2qup_A 106 KEVDRKLLDLTDAVL 120 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHH
Confidence 999999999999763
No 299
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.50 E-value=4.8e+02 Score=27.75 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=109.3
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEe-----cCcEEEEEEcCCcEEEEcCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVAC-----GEYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~-----G~~hs~aLT~dG~VysWG~n 323 (992)
++.+..+.+++|+.|++|..-...--..|... .-......+...++..|+.+.. ...+.+++|++|.+.-.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGA-RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSS-CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCC-CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 56677889999999999999764422222110 0011111223334667777654 23467888999988766433
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEE--EECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeecc
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYI--SCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR 401 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~V--acG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 401 (992)
.|.. .. . .........++..++.+ ..+..+.+++|++|+++.+-..+.-.+|....-. +-+..-.
T Consensus 128 e~~~--~~----r---~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~ 194 (307)
T 1zi0_A 128 EFNR--LR----T---AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGE 194 (307)
T ss_dssp GGTT--CC----T---TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCT
T ss_pred Hhhc--cc----c---CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCC
Confidence 2200 00 0 00011111223445443 3466789999999999999765544444321111 1112223
Q ss_pred CCeEEEEEeCC-ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEee--cC
Q 001953 402 GLRTTRVSCGV-WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVAC--GH 478 (992)
Q Consensus 402 ~~~I~~VacG~-~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~ 478 (992)
+..|+.+..-. ...++++ +++|.+--.--.++-.-+.+... ...+. +.. ....++.+.. +.
T Consensus 195 ~d~Vv~~~~~~~~~~ll~~-------------T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~-~~~-~~~~lv~~~~v~~~ 258 (307)
T 1zi0_A 195 GDKVVSLIVPRGDGAILTA-------------TQNGYGKRTAVAEYPTKSRATKG-VISIK-VTE-RNGLVVGAVQVDDC 258 (307)
T ss_dssp TCCEEEEECCCSSCEEEEE-------------ETTSEEEEECGGGSCCCCTTSCC-EESSC-CCT-TTCSEEEEEEECTT
T ss_pred CCEEEEEEEecCCCEEEEE-------------EcCCceEEEEHHHhccCCCCCCC-EEeeE-ecC-CCCeEEEEEEeCCC
Confidence 44566554321 1222221 44455443332222211111111 11111 110 1133444332 56
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCC
Q 001953 479 DLSVALTTSGHVYTMGSAAYGQLG 502 (992)
Q Consensus 479 ~htvaLT~dG~Vy~wG~N~~GQLG 502 (992)
...+++|++|.+.-+-.+..-..|
T Consensus 259 ~~l~~~t~~g~~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 259 DQIMMITDAGTLVRTRVSEISIVG 282 (307)
T ss_dssp CEEEEEESSCCEEEEEGGGSCBCC
T ss_pred ceEEEEcCCCcEEEEecccccccC
Confidence 678899999998877766554333
No 300
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.38 E-value=3.9e+02 Score=27.74 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.2
Q ss_pred ceeEEEecCCeEEEEec
Q 001953 361 WHTAVVTSAGHLFTFGD 377 (992)
Q Consensus 361 ~hs~aLT~dG~Vy~wG~ 377 (992)
.|++++ .+|+||.+|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466666 6889999994
No 301
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=32.33 E-value=1.3e+02 Score=35.28 Aligned_cols=80 Identities=9% Similarity=0.011 Sum_probs=48.6
Q ss_pred ccchHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 001953 795 IDDSKQMND--SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA---------------------------- 844 (992)
Q Consensus 795 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 844 (992)
.+.|++++. .+..+|..|-.+-++|..+.+...++..+..|+|-.+...-
T Consensus 20 ~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (522)
T 3vbb_A 20 RETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLK 99 (522)
T ss_dssp HHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhhhhhhh
Confidence 455666542 24567777777777777777777777777776665443210
Q ss_pred -------H-HHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 845 -------E-DEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 845 -------~-~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
+ .-.++.++..+.++.+.++|.++.-.||-
T Consensus 100 ~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~l~~iPN 137 (522)
T 3vbb_A 100 VSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGN 137 (522)
T ss_dssp SSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHHGGGSCC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 01344555666677777778777777653
No 302
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=31.93 E-value=5.2e+02 Score=27.97 Aligned_cols=237 Identities=8% Similarity=0.045 Sum_probs=121.9
Q ss_pred EEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeec--CCCcEEEEEecC-cEEEEEEcCCcEEEEcC
Q 001953 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEIL--SGVNVELVACGE-YHTCAVTRSGDLYTWGD 322 (992)
Q Consensus 246 I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l--~~~~I~~Va~G~-~hs~aLT~dG~VysWG~ 322 (992)
+..++......+.-..||.|..|-.... ..+..+ ....|..++... ...+.-..||.|..|-.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~--------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK--------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC--------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 3445556677777788999999974321 122222 123567776543 35566678999999964
Q ss_pred CCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC----cceeEEEecCCeEEEEecCCCCCCCCCCCc---------
Q 001953 323 GTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG----LWHTAVVTSAGHLFTFGDGSFGALGHGDHI--------- 389 (992)
Q Consensus 323 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG----~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~--------- 389 (992)
.+ +. ....+.+ ....|..++.- ..+.+.-+.+|.|+.|-......+......
T Consensus 191 ~~---~~----------~~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 191 KK---GC----------CTHVFEG--HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp TT---TE----------EEEEECC--CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred CC---Cc----------EEEEECC--CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 42 11 1111111 22345555432 245566678999999975543222110000
Q ss_pred CCCcCeEEeeccC--CeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCC
Q 001953 390 STSIPREVETLRG--LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLI 467 (992)
Q Consensus 390 ~~~~P~~V~~l~~--~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~ 467 (992)
....|..+..+.+ ..|..++......+.. ..+|.|+.|--.... +.......
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--------------~~d~~i~vwd~~~~~------------~~~~~~~~ 309 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSG--------------SYDNTLIVWDVAQMK------------CLYILSGH 309 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEEEETTEEEEE--------------ETTSCEEEEETTTTE------------EEEEECCC
T ss_pred cCCCeEEEEEccCccceEEEEcCCCCEEEEE--------------eCCCeEEEEECCCCc------------EEEEecCC
Confidence 0001111222211 2344554333332222 456889998543210 11111112
Q ss_pred CCCeEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEE
Q 001953 468 DENICQVACG--HDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTW 545 (992)
Q Consensus 468 ~~~I~~Ia~G--~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~W 545 (992)
...|..++.. ....+.-..+|.|+.|-... | .....+. .....|..++....+.+.-..||.|..|
T Consensus 310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~---------~~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G---------ELMYTLQ--GHTALVGLLRLSDKFLVSAAADGSIRGW 377 (464)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T---------EEEEEEC--CCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C---------cEEEEEe--CCCCcEEEEEEcCCEEEEEeCCCcEEEE
Confidence 2345555443 23555666788888886432 1 1111111 2335588888888888888899999999
Q ss_pred EcCC
Q 001953 546 GKGA 549 (992)
Q Consensus 546 G~N~ 549 (992)
-...
T Consensus 378 d~~~ 381 (464)
T 3v7d_B 378 DAND 381 (464)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7654
No 303
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=31.92 E-value=41 Score=35.78 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCCCCCCceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 34 PRPEKEYQSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 34 ~~~~~~~~~fs~i~--~~~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+.++..+|-|+= |..++=|-|+|.+||..|+.-|..=|+
T Consensus 220 ~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 220 TPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp CSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 34566788998888 667999999999999999999887653
No 304
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=31.92 E-value=80 Score=29.48 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKT 853 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (992)
.|.+|+.+++++...|..+|+...+|-+++..+|..+..--.....+..+
T Consensus 47 ~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~ 96 (123)
T 4aj5_K 47 TLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888888888887766444444444433
No 305
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.81 E-value=27 Score=29.24 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=35.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
+...|..|...|..... ..-..||+.||..|...... ..+.|+-|...+....
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~----------~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 14 SGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE----------QHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT----------TTCSCTTTCCCCCCSC
T ss_pred CCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH----------cCCcCcCcCCccCCcc
Confidence 35579999988754332 11235999999999875421 1257999988877654
No 306
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.50 E-value=53 Score=23.55 Aligned_cols=23 Identities=52% Similarity=0.615 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
+|..+|++|..+-...+.|+.++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 307
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=31.37 E-value=3.5e+02 Score=25.98 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
+.|..+++..+...++...+++.-..+|.-+...+..|-..|..=-+||+.-.+-|+.+++.||.
T Consensus 55 ~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 55 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555444444444444444444444444333333333333444444444444444443
No 308
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=31.24 E-value=4.4e+02 Score=26.93 Aligned_cols=109 Identities=7% Similarity=0.050 Sum_probs=60.9
Q ss_pred CCCEEEEEeCCc-----EEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec--CcEEEEEEcCC
Q 001953 243 ALDVHNIACGAR-----HAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG--EYHTCAVTRSG 315 (992)
Q Consensus 243 ~~~I~~Ia~G~~-----hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG 315 (992)
...|..|+.... ..+.-..||.|+.|-....++. ....+.. ....|..++.. ..+.+....+|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 346888877654 4555577899999975432211 0111111 23457777654 33566667799
Q ss_pred cEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEE--Ccc--eeEEEecCCeEEEEec
Q 001953 316 DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC--GLW--HTAVVTSAGHLFTFGD 377 (992)
Q Consensus 316 ~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Vac--G~~--hs~aLT~dG~Vy~wG~ 377 (992)
.|..|-... ++ ...+. .....|..++. ... +.+.-..+|.|+.|-.
T Consensus 109 ~v~iwd~~~---~~-----------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 109 TAKMWDLSS---NQ-----------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEEETTT---TE-----------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred cEEEEEcCC---CC-----------ceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 999996542 11 11111 12335666664 332 3444567899999964
No 309
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=31.18 E-value=4.8e+02 Score=27.32 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=33.6
Q ss_pred cEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecC----CCcEEEEEec------CcE-EEEEEcCCcEEEEcC
Q 001953 254 RHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS----GVNVELVACG------EYH-TCAVTRSGDLYTWGD 322 (992)
Q Consensus 254 ~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~----~~~I~~Va~G------~~h-s~aLT~dG~VysWG~ 322 (992)
...+....+|.|+.|-...... ........+.... ...|..++.. ..+ .+....+|.|+.|-.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 4555567789999996432211 0000011122221 2456666654 344 555678899999954
Q ss_pred C
Q 001953 323 G 323 (992)
Q Consensus 323 n 323 (992)
.
T Consensus 156 ~ 156 (397)
T 1sq9_A 156 H 156 (397)
T ss_dssp E
T ss_pred C
Confidence 4
No 310
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.17 E-value=11 Score=31.88 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=36.0
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|...|.-.. -..||+.||..|......... .......|+.|...+...
T Consensus 18 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~----~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNR----NTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSB----CTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhcc----CCCCCCCCCCCCCcCCHH
Confidence 3456999988775322 236999999999875433211 123467899998776653
No 311
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.15 E-value=1.4e+02 Score=24.47 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+++..|..+++.|+++-.....++..++..+.-
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444433
No 312
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=30.88 E-value=93 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.|.+-..+|+..+++|..+....+.+-++.+.+|+.|.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444444444443
No 313
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=30.87 E-value=2.1e+02 Score=29.99 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.7
Q ss_pred CcEEEEEeCCCcEEEEeCC
Q 001953 478 HDLSVALTTSGHVYTMGSA 496 (992)
Q Consensus 478 ~~htvaLT~dG~Vy~wG~N 496 (992)
..|++++ .+|.||++|..
T Consensus 150 ~~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp ESCEEEE-ETTEEEEECCE
T ss_pred cccEEEE-ECCEEEEEcCC
Confidence 3456555 57899999953
No 314
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=30.78 E-value=89 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAE 829 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (992)
.|..||.||++++-+++...+-..++
T Consensus 19 eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 19 DLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46678888888776666665555443
No 315
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=30.77 E-value=2.3e+02 Score=30.82 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001953 855 NEVIKSL 861 (992)
Q Consensus 855 ke~iksL 861 (992)
.+.++.+
T Consensus 128 ~~~~~~~ 134 (341)
T 3zx6_A 128 GKVVDNV 134 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 316
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.70 E-value=1.1e+02 Score=33.00 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (992)
..-+.+..++..++++++.++.+.+..+.++++.
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555554444444444444443
No 317
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.60 E-value=1.1e+02 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVE 817 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~ 817 (992)
|..|++.|..|+.+++
T Consensus 22 N~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 22 NAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 318
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=30.52 E-value=1.6e+02 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=14.1
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001953 798 SKQMNDSLNQEIIKLRAQVEELTSKS 823 (992)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (992)
|.+..-.|..+|+.|+.+++.|++..
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~ 30 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETAR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666555555443
No 319
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.38 E-value=2.7e+02 Score=25.11 Aligned_cols=33 Identities=36% Similarity=0.410 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
+++.+|+.++++|+..++....+++.+.-++.-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555444444444433
No 320
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.35 E-value=41 Score=32.02 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.8
Q ss_pred CceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 40 YQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 40 ~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
.+||-|.=.. +++=++|++++|.+.|+.-|+.+|....
T Consensus 91 ~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~~~ 129 (132)
T 1v61_A 91 DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGP 129 (132)
T ss_dssp CCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred ccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 4799887654 7999999999999999999999998644
No 321
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.06 E-value=27 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=32.5
Q ss_pred cCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhH
Q 001953 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654 (992)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~ 654 (992)
.|..|+..-. ......|..|...|+..|..+... ..++..+.|..|.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~------~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALY------EVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCC------SCCSSCCSCTTTS
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcC------CCCCCcEECcCcc
Confidence 3777776532 345677899999999999764321 2345689999995
No 322
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.04 E-value=31 Score=28.16 Aligned_cols=48 Identities=15% Similarity=0.370 Sum_probs=34.6
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
+...|..|+.. .....|..|...|+..|...... ..++..+.|..|..
T Consensus 10 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~------~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDME------KAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCC------SCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC----CcEEECCCCChhhhhhccCCCCC------CCCCCceECccccc
Confidence 45578889873 35677889999999999764321 23567899999964
No 323
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.98 E-value=8 Score=31.58 Aligned_cols=48 Identities=23% Similarity=0.561 Sum_probs=32.0
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
...|..|...+.-... ..||+.||..|...... +....|+.|...+..
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS---------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT---------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH---------hCcCCCCCCCcCCCh
Confidence 4458889877642221 47999999999765421 234568888776654
No 324
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.66 E-value=2.3e+02 Score=24.93 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=37.6
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE 847 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (992)
+=|...|.|....+.|.+-..+|+.+.+.++..|...+.++.++..-..+|
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~E 65 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334556666666777777778888888888888888888888887544443
No 325
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.66 E-value=1.9e+02 Score=32.81 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=38.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT------------VTAIAEDEAEKCKTANEVIKSLT 862 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ake~iksLt 862 (992)
.+-|++..+.+++.+.+++++. +++..-.+...+|.++++.+.. .+.++.=|+++..+-| -|+-|.
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 449 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK-KVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4667777777777777777653 3333333333444444444333 2344455666666444 455555
Q ss_pred HHHHHHh
Q 001953 863 VQLKKMA 869 (992)
Q Consensus 863 ~qlk~~~ 869 (992)
+|++++-
T Consensus 450 ~~~~~~~ 456 (471)
T 3mq9_A 450 GEITTLN 456 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 326
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.65 E-value=86 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.++.+|+++++.|.++-+..+..|+.++++++..+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888888888888888888766
No 327
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=29.52 E-value=37 Score=34.22 Aligned_cols=47 Identities=19% Similarity=0.490 Sum_probs=34.9
Q ss_pred CcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 600 s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
..|..|+..- ....|..|...|+..|..+... ..+...+.|..|...
T Consensus 3 ~~C~~C~~~g----~ll~Cd~C~~~~H~~Cl~p~l~------~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG----DLVMCNQCEFCFHLDCHLPALQ------DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS----SCCCCTTTCCBCCSTTSTTCCS------SCCCTTCCTTTTSCS
T ss_pred CcCccCCCCC----ceeECCCCCchhccccCCCCcc------cCCCCCCCCcCccCC
Confidence 3588888542 4677999999999999874322 245678999999765
No 328
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.44 E-value=1.1e+02 Score=28.63 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=33.9
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
.-++....+.|+.-+..|+.+++.|.+..+....++....+.++++...|
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566666777777777777777777777777777777777777666443
No 329
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=29.44 E-value=15 Score=33.46 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=33.4
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|.-.. ...||+.||..|...... +....|+.|...+..
T Consensus 14 ~~~~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPV----TLPCNHTLCKPCFQSTVE---------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCE----ECTTSCEECHHHHCCCCC---------TTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCcee----EcCCCCHHhHHHHHHHHh---------HCcCCCCCCCcccCc
Confidence 3456999988775222 236999999999764321 224679999887765
No 330
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=29.43 E-value=17 Score=30.39 Aligned_cols=50 Identities=20% Similarity=0.448 Sum_probs=32.3
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
+...|..|...|.-.. ....||+.||..|-...... ...+.|+.|...+.
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~--------~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLE--------SDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHH--------SSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHh--------cCCCcCCCCCCcCC
Confidence 3456999988775322 12349999999997654322 12457999987543
No 331
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=29.28 E-value=4.8e+02 Score=26.70 Aligned_cols=109 Identities=10% Similarity=-0.047 Sum_probs=59.6
Q ss_pred CEEEEEeCC------cEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec---CcEEEEEEcCC
Q 001953 245 DVHNIACGA------RHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG---EYHTCAVTRSG 315 (992)
Q Consensus 245 ~I~~Ia~G~------~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG 315 (992)
.|..++... ...+.-..+|.|+.|-....-. ...+. .....|..|+.. ....+....+|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg 138 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------IKHYV-GHGNAINELKFHPRDPNLLLSVSKDH 138 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------EEEEE-SCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------eeeec-CCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 455555433 2556667899999996432110 11111 123467777764 35566667799
Q ss_pred cEEEEcCCCCCCCccCCCCCccccccceecc-CCCCCcEEEEEECc--ceeEEEecCCeEEEEecC
Q 001953 316 DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSG-NLDGIHLSYISCGL--WHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 316 ~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~-~l~~~~Iv~VacG~--~hs~aLT~dG~Vy~wG~n 378 (992)
.|+.|-... +. ....+.. ......|..++... .+.+....+|.|+.|-..
T Consensus 139 ~i~iwd~~~---~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 139 ALRLWNIQT---DT----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp CEEEEETTT---TE----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred eEEEEEeec---Ce----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999996542 11 0011100 11234577776543 345555678999999643
No 332
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.21 E-value=68 Score=36.37 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=21.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (992)
++++++.+.|.+++++++++++.++++..+++.+.+++..+++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444444444444443
No 333
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=29.19 E-value=48 Score=37.19 Aligned_cols=42 Identities=14% Similarity=0.393 Sum_probs=35.3
Q ss_pred CCCCceEEEEEc-----CCCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 001953 37 EKEYQSFSLIYN-----DRSLDLICKDKDEAEVWLVGLKALITRGTH 78 (992)
Q Consensus 37 ~~~~~~fs~i~~-----~~sLdLi~~~~~ea~~W~~gL~~l~~~~~~ 78 (992)
..+..+|.|++. .+++-|.|.+++|-+.|+.-|+..++.+..
T Consensus 366 ~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~ 412 (418)
T 3t06_A 366 ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHH 412 (418)
T ss_dssp SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred cccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence 356789999993 278999999999999999999999998764
No 334
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=28.85 E-value=1.9e+02 Score=25.36 Aligned_cols=58 Identities=9% Similarity=0.132 Sum_probs=30.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLE-------AELERTSKQLKTVTAIAEDEAEKCK 852 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (992)
++.|-|+-+.+..++......|+.+.+.++..- .+|+.-...+.+.|...++.+++++
T Consensus 38 v~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr 102 (107)
T 2spc_A 38 VEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666655555555555444332 2344444555555555555554444
No 335
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.77 E-value=2.6e+02 Score=27.38 Aligned_cols=12 Identities=0% Similarity=0.177 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001953 857 VIKSLTVQLKKM 868 (992)
Q Consensus 857 ~iksLt~qlk~~ 868 (992)
...+|..+|+++
T Consensus 127 q~~~L~~kf~~~ 138 (180)
T 1s94_A 127 QYSTISRKFVEV 138 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 336
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=28.75 E-value=40 Score=28.46 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=38.9
Q ss_pred cccCcCCCCCCCCC-cccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhh
Q 001953 597 VDHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKL 657 (992)
Q Consensus 597 ~d~s~C~~C~~~Fs-f~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l 657 (992)
.+...|..|+...+ -.....-|..|...|+..|..... .++..++|+.|...-
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--------vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--------IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--------CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--------CCCCCcCCccCcCcC
Confidence 34667999987652 344577899999999999976431 345789999998654
No 337
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.67 E-value=1.6e+02 Score=33.31 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=9.2
Q ss_pred ccchHhhhhhHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRA 814 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~ 814 (992)
.|.|-+....+..+|..|+.
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~ 45 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEG 45 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHH
Confidence 44454444444444444443
No 338
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.64 E-value=37 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=30.9
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|.-. --..||+.||..|... ....|+.|...+..
T Consensus 5 ~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-------------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-------------SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-------------SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCe----EEcCCCCcccHHHHcc-------------CCCCCCcCCcEeec
Confidence 345689998877532 2246999999999764 24568888766543
No 339
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=28.62 E-value=5.2e+02 Score=26.92 Aligned_cols=255 Identities=9% Similarity=-0.038 Sum_probs=118.4
Q ss_pred CCCEEEEEeC---CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEee-------ecCCCcEEEEEe---cCcEEE
Q 001953 243 ALDVHNIACG---ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIE-------ILSGVNVELVAC---GEYHTC 309 (992)
Q Consensus 243 ~~~I~~Ia~G---~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~-------~l~~~~I~~Va~---G~~hs~ 309 (992)
...|..|+.. ....+.-..||.|..|-......... .....+. ......|..|+. +....+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce------EeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 3467777764 35556667899999997654322111 0000000 012346777775 344666
Q ss_pred EEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc-----ceeEEEecCCeEEEEecCCCCCCC
Q 001953 310 AVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL-----WHTAVVTSAGHLFTFGDGSFGALG 384 (992)
Q Consensus 310 aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~-----~hs~aLT~dG~Vy~wG~n~~GqLG 384 (992)
....+|.|+.|-... +. ....+. ....+..+.... ...++-+.+|.|+.|-......
T Consensus 117 s~~~d~~i~iwd~~~---~~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-- 178 (408)
T 4a11_B 117 SSSFDKTLKVWDTNT---LQ----------TADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-- 178 (408)
T ss_dssp EEETTSEEEEEETTT---TE----------EEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--
T ss_pred EEeCCCeEEEeeCCC---Cc----------cceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--
Confidence 667799999996542 11 000111 112344444332 1455557889999996432111
Q ss_pred CCCCcCCCcCeEEeeccCCeEEEEEeCCceE-EEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCC-CC---CCCCCCccc
Q 001953 385 HGDHISTSIPREVETLRGLRTTRVSCGVWHT-AAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGR-LG---HGDKEPRLF 459 (992)
Q Consensus 385 ~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht-~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQ-LG---~g~~~~~~~ 459 (992)
...+.. ....|..++...... ++++. ..+|.|+.|-...... +- .........
T Consensus 179 ---------~~~~~~-~~~~v~~~~~~~~~~~ll~~~------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 179 ---------SHILQG-HRQEILAVSWSPRYDYILATA------------SADSRVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp ---------CEEECC-CCSCEEEEEECSSCTTEEEEE------------ETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred ---------eeeecC-CCCcEEEEEECCCCCcEEEEE------------cCCCcEEEEECCCCCccccccccccccccee
Confidence 111111 122466666544432 22211 4558999996543221 00 000000000
Q ss_pred ceeeccCCCCCeEEEeec--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcCCEEEEEE
Q 001953 460 PECVAPLIDENICQVACG--HDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537 (992)
Q Consensus 460 P~~V~~l~~~~I~~Ia~G--~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt 537 (992)
+..........|..++.. ..+.+....+|.|+.|-......+-.-.. .. .........+..........++..
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-KV----CNNSKKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-CC----CCCCSSCCCCEECCSSSSCEEEEE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-cc----cccccccceeEEecCCCceEEEEe
Confidence 111111123446666553 34566667889999998654222111000 00 000001111111122234455567
Q ss_pred cCCcEEEEEcC
Q 001953 538 STSKVYTWGKG 548 (992)
Q Consensus 538 ~~G~Vy~WG~N 548 (992)
.+|.|+.|-..
T Consensus 312 ~~~~i~v~d~~ 322 (408)
T 4a11_B 312 YGSTIAVYTVY 322 (408)
T ss_dssp ETTEEEEEETT
T ss_pred cCCEEEEEECc
Confidence 88999999653
No 340
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.50 E-value=1e+02 Score=28.85 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSK 822 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~ 822 (992)
+||..|++||++++.+
T Consensus 4 ~e~~~l~~qi~~~ekr 19 (123)
T 4dzo_A 4 KEVAELKKQVESAELK 19 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788777766543
No 341
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.50 E-value=2e+02 Score=33.11 Aligned_cols=62 Identities=23% Similarity=0.176 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLK 866 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk 866 (992)
+.||-.+-+.|-=.+++-.+..+.|++++++.|.+|-...++-.+|...+..||.++...|.
T Consensus 298 qrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~ 359 (551)
T 2b5u_A 298 QRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELD 359 (551)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444455445555556667777778888888877777777776667778877665553
No 342
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=28.49 E-value=1.8e+02 Score=30.59 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=46.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKK 867 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~ 867 (992)
++=....-+.|.+++..|+.++++|.+.+++-+.-.++..+-.... -.|+...+++..|...|++
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~L--------L~a~sl~~l~~~L~~~l~~ 131 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDL--------LDATSLEDVVSTVEDSLRH 131 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHH
Confidence 4444456777888888888888888888887776555555433322 2567888999999888775
No 343
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.31 E-value=87 Score=22.54 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
+.+|..+|++|..+-+..+.|+.+++.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456666666666666666666555543
No 344
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.25 E-value=51 Score=30.30 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=37.9
Q ss_pred cCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
.|..|+.... ......|..|...|+..|..+... ..++..++|..|...++++
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~------~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVA------EPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCS------SCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCcc------CCCCCCeECccccchhhcc
Confidence 4666765432 345678999999999999875322 2456789999999887764
No 345
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.05 E-value=20 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+..|+.+|+.|+..-.....++..+.+.+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444433
No 346
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.00 E-value=2.9e+02 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=10.8
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEEL 819 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~ 819 (992)
+.=++.-+.-.+|-.+|+.+|+.+
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~ 46 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555554443
No 347
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.96 E-value=98 Score=23.48 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=21.6
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL 826 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (992)
.|+|-+.-+-...||.|-++|+.+|..+-.+.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777766654433
No 348
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=27.85 E-value=76 Score=34.38 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=42.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCCCC
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQL-KKMAEKSPEGA 876 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~ql-k~~~e~lp~~~ 876 (992)
+.-+.+.+|+...+..-+.+.+.++....+..++.-.|+.+-....+-.+.|+.|++.|+.+..++ +.||+.||+..
T Consensus 32 ~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~ 109 (298)
T 3axj_B 32 QQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQD 109 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 344445555555555445555444444433333333332221111223456788889999987765 99999998643
No 349
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.79 E-value=3e+02 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=15.3
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAE 829 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (992)
+.|..+-..+.+.|.-|+-.+++|+++-.....+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555444443333
No 350
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.55 E-value=37 Score=29.40 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (992)
...+.+.+++..|..+-..|+.+-+++..|+..++
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 351
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.47 E-value=1.4e+02 Score=27.00 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=30.0
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.+.....+.|...+..+...++.|..+.+....+++.+++++.+..
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666667777777777776654
No 352
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.44 E-value=74 Score=22.95 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
+.+|..+|++|..+-...+.|+.++++
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666666666666666666666554
No 353
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=27.31 E-value=66 Score=35.43 Aligned_cols=41 Identities=10% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCCCceEEEEEc----CCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 001953 37 EKEYQSFSLIYN----DRSLDLICKDKDEAEVWLVGLKALITRGT 77 (992)
Q Consensus 37 ~~~~~~fs~i~~----~~sLdLi~~~~~ea~~W~~gL~~l~~~~~ 77 (992)
..+..+|.+|+. .+.+-|.|.+++|-+.|+.-|+..|...+
T Consensus 330 ~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~k 374 (377)
T 3p6a_A 330 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK 374 (377)
T ss_dssp TTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTCC
T ss_pred ccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 445689999993 35788999999999999999999998765
No 354
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.30 E-value=42 Score=27.90 Aligned_cols=29 Identities=31% Similarity=0.844 Sum_probs=22.4
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
....|..|+...+++ .-.| .||..||...
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred cCCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 345799999987766 4578 5999999754
No 355
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.88 E-value=95 Score=21.39 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001953 808 EIIKLRAQVEELTSK 822 (992)
Q Consensus 808 ~~~~~~~~~~~~~~~ 822 (992)
||+-|+..|+.|+.+
T Consensus 2 evqalkkrvqalkar 16 (33)
T 1fmh_B 2 EVQALKKRVQALKAR 16 (33)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 455555555555544
No 356
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.75 E-value=2.2e+02 Score=29.48 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSK----------QLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSP 873 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp 873 (992)
.+..++.+++++++.++...+....++++.++ +++++-.....--++.++|+.-++.+..+|....-+.|
T Consensus 57 ~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP 136 (277)
T 2f1m_A 57 TYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSP 136 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECC
Confidence 35566666667666666655555555555432 23333222222222334444445555555655555555
Q ss_pred CC
Q 001953 874 EG 875 (992)
Q Consensus 874 ~~ 875 (992)
-.
T Consensus 137 ~~ 138 (277)
T 2f1m_A 137 IS 138 (277)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 357
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=26.55 E-value=2.1e+02 Score=21.68 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
.|.+||-.|+++..+|..+--.++.+++..+.
T Consensus 8 slasqvvkltkql~eqt~~rv~lq~qlq~lle 39 (48)
T 2kes_A 8 SLASQVVKLTKQLKEQTVERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666677777777777777776663
No 358
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.55 E-value=76 Score=23.03 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=19.8
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (992)
.++++|....++|..|+.|..-|.++-.
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3567777778888888777777766543
No 359
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.48 E-value=54 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=10.7
Q ss_pred ccchHhhhhhHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQ 815 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~ 815 (992)
+++|...+..|..||.+|++-
T Consensus 10 VEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555543
No 360
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.44 E-value=3.9e+02 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=14.2
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+.+++.+-..|.-|+..++++...|...
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~ 67 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENS 67 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4555555555555555555554444433
No 361
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.40 E-value=2.5e+02 Score=31.88 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhcC
Q 001953 851 CKTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 851 ~~~ake~iksLt~qlk~~~e~l 872 (992)
-..|++..|-++.|=.-+|++|
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 465 LASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhcccHHHHHHHHHHHHHHhc
Confidence 3445555666666555555543
No 362
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.32 E-value=2.2e+02 Score=22.48 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
...+.-...|+||+..|..|+.....+..+.....+.+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455566666666666666655444444444443333
No 363
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.32 E-value=39 Score=29.70 Aligned_cols=30 Identities=27% Similarity=0.632 Sum_probs=22.9
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
....|..|+...++. ..-.|+ ||..||...
T Consensus 24 ~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA-TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCBCSSSCCBCSSS-SCEECT-TCCEECTTT
T ss_pred cCccchhhCCeeccc-CCeEcC-CCCEecccC
Confidence 346799999988775 246787 999999754
No 364
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=26.28 E-value=6.5e+02 Score=27.24 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=94.6
Q ss_pred EEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEe---cCcEEEEEEcCCcEEEEcCCCCCCCccC
Q 001953 255 HAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVAC---GEYHTCAVTRSGDLYTWGDGTYNSGLLG 331 (992)
Q Consensus 255 hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~---G~~hs~aLT~dG~VysWG~n~~~~GqLG 331 (992)
+.+.-..+|.|+.|-.+..+..+ ....+..........|..|+. +....+....+|.|+.|-.... ..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--~~-- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--NT-- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--CS--
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--CC--
Confidence 56666778999999876532211 011111111112335777776 3445556678999999965521 10
Q ss_pred CCCCccccccceeccCCCCCcEEEEEECc---ceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEE
Q 001953 332 HGSKVSCWIPRKVSGNLDGIHLSYISCGL---WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRV 408 (992)
Q Consensus 332 ~g~~~~~~~P~~v~~~l~~~~Iv~VacG~---~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~V 408 (992)
..+.... ......|..|+... +..+.-..+|.|..|-....++ |..........|..|
T Consensus 267 -------~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 267 -------SKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQV 327 (430)
T ss_dssp -------SSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEE
T ss_pred -------CcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEE
Confidence 0011110 01223466666543 2233446789999997554322 111111112356666
Q ss_pred EeCCce-EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccC--CCCCeEEEeecCc---EEE
Q 001953 409 SCGVWH-TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPL--IDENICQVACGHD---LSV 482 (992)
Q Consensus 409 acG~~h-t~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~G~~---htv 482 (992)
+..... .++++. ..+|.|..|--...+............|..+..+ ....|..++.... ..+
T Consensus 328 ~~sp~~~~~l~s~------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 328 QWSPHNETILASS------------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp EECSSCTTEEEEE------------ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred EECCCCCCEEEEE------------eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 665433 222211 3458888886544221100000000001222211 1234666654332 455
Q ss_pred EEeCCCcEEEEeCC
Q 001953 483 ALTTSGHVYTMGSA 496 (992)
Q Consensus 483 aLT~dG~Vy~wG~N 496 (992)
....+|.|..|--.
T Consensus 396 s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 396 SVSEDNIMQVWQMA 409 (430)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEECCCCEEEeEcc
Confidence 56677878877643
No 365
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.27 E-value=1.4e+02 Score=23.92 Aligned_cols=6 Identities=50% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHHHHh
Q 001953 846 DEAEKC 851 (992)
Q Consensus 846 ~~~~~~ 851 (992)
++-.++
T Consensus 47 ~~I~~~ 52 (60)
T 3htk_A 47 DEVIKK 52 (60)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 366
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=26.20 E-value=5.8e+02 Score=26.66 Aligned_cols=250 Identities=9% Similarity=0.000 Sum_probs=110.2
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEee----ecCCCcEEEEE-ecCcEEEEEEcCCcE
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIE----ILSGVNVELVA-CGEYHTCAVTRSGDL 317 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~----~l~~~~I~~Va-~G~~hs~aLT~dG~V 317 (992)
.|..|+.. ..+.+....+|.|+.|-......+..-.... .....+. ...+..|..++ ......++.+.+|.|
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 46666553 4556667788999999764321111000000 0000000 00000021111 123456666788999
Q ss_pred EEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC--cceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCe
Q 001953 318 YTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG--LWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPR 395 (992)
Q Consensus 318 ysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG--~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~ 395 (992)
+.|-.... . ....+. .....|..++.. ..+.+....+|.|+.|-..... ...
T Consensus 230 ~~~d~~~~---~----------~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~ 283 (425)
T 1r5m_A 230 FVYQITEK---T----------PTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQN 283 (425)
T ss_dssp EEEETTCS---S----------CSEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSE
T ss_pred EEEEcCCC---c----------eeeeec--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cce
Confidence 99965521 0 001111 112345555443 3345555678889888533210 011
Q ss_pred EEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEe
Q 001953 396 EVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVA 475 (992)
Q Consensus 396 ~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia 475 (992)
.+.. ....|..++..... .+++. ..+|.|+.|-..... +..........|..++
T Consensus 284 ~~~~-~~~~i~~~~~~~~~-~l~~~------------~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 284 CFYG-HSQSIVSASWVGDD-KVISC------------SMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGR 337 (425)
T ss_dssp EECC-CSSCEEEEEEETTT-EEEEE------------ETTSEEEEEETTTTE------------EEEEEECTTCCEEEEE
T ss_pred EecC-CCccEEEEEECCCC-EEEEE------------eCCCcEEEEECCCCc------------EeEecccCCccEEEEE
Confidence 1111 12246666554443 22211 455899999543210 1111111233455554
Q ss_pred ec--CcEEEEEeCCCcEEEEeCCCCCCCCC---CCCCC---cc---eeeecCCcCCC-CEEEEEEcC--CEEEEEEcCCc
Q 001953 476 CG--HDLSVALTTSGHVYTMGSAAYGQLGV---PVADG---LV---PTRVDGEIAES-FVEEVACGA--YHVAALTSTSK 541 (992)
Q Consensus 476 ~G--~~htvaLT~dG~Vy~wG~N~~GQLG~---~~~~~---~~---P~~v~~~l~~~-~V~~Ia~G~--~Ht~aLt~~G~ 541 (992)
.. ..+.++-..+|.|+.|-......... ...+. .. +.......... .|..++... ...++-..+|.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence 43 34555556788888887543211000 00000 00 11111111112 688877754 34556678888
Q ss_pred EEEEEc
Q 001953 542 VYTWGK 547 (992)
Q Consensus 542 Vy~WG~ 547 (992)
|+.|-.
T Consensus 418 i~iw~~ 423 (425)
T 1r5m_A 418 GSVVAI 423 (425)
T ss_dssp CEEEEC
T ss_pred EEEEee
Confidence 888853
No 367
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=26.11 E-value=12 Score=34.68 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=33.6
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|.-.. ...||+.||..|...... .....|+.|...+..
T Consensus 51 ~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI----TTVCQHNVCKDCLDRSFR---------AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE----ECTTSCEEEHHHHHHHHH---------TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE----EeeCCCcccHHHHHHHHh---------HCcCCCCCCCccCCC
Confidence 3456999988776222 237999999999764432 233579999877654
No 368
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.11 E-value=1e+02 Score=24.21 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 001953 855 NEVIKSL 861 (992)
Q Consensus 855 ke~iksL 861 (992)
|||+|-|
T Consensus 44 Kevlk~l 50 (54)
T 1deb_A 44 KEVLKQL 50 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555444
No 369
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.97 E-value=3.1e+02 Score=23.41 Aligned_cols=58 Identities=28% Similarity=0.298 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.....+..+..+++.+..++...+.++..++++++-+ .+|..+ +.|-++..+.+|.+.
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l----E~eld~---~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT----EDELDK---YSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHH
Confidence 3334444555555566666666666666666666533 333332 334455555555543
No 370
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.96 E-value=12 Score=30.97 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=33.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
+...|..|...+.-. --..||+.||..|...... ....|+-|...+....
T Consensus 14 ~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~----------~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASW----------LGKRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTT----------CSSBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHH----------CCCcCcCcCchhCHhh
Confidence 445699998776432 1236999999999754321 1267999988877643
No 371
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.65 E-value=4.1e+02 Score=24.69 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
...|+..|+.|+.++++|+.+....+..|..+..
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444555555555555554444444444433
No 372
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.62 E-value=48 Score=28.68 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=18.3
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSE 824 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (992)
.-+..|+..+..|.+|+.+|+.+.+.|.++.+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555556666666666666666666555543
No 373
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.55 E-value=2.3e+02 Score=22.41 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001953 806 NQEIIKLRAQVEELT 820 (992)
Q Consensus 806 ~~~~~~~~~~~~~~~ 820 (992)
..++..|.++.+.|.
T Consensus 15 ~~~l~~L~~rN~rL~ 29 (51)
T 3m91_A 15 EARIDSLAARNSKLM 29 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 374
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.28 E-value=9.3 Score=31.13 Aligned_cols=52 Identities=21% Similarity=0.506 Sum_probs=33.7
Q ss_pred cccCcCCCCCCCCCcc---cccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 597 VDHSVCSSCHNPFGFR---RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~---r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
.+...|..|...|.-. .+.-....||+.||..|....... ...|+-|...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----------~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----------ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----------CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----------CCCCCCCCCccC
Confidence 3456799998877532 112234579999999998654321 246888876654
No 375
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.26 E-value=1.4e+02 Score=26.24 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001953 806 NQEIIKLRAQ 815 (992)
Q Consensus 806 ~~~~~~~~~~ 815 (992)
.+|+.+|+.+
T Consensus 20 eeel~~lke~ 29 (89)
T 3bas_A 20 LKQMDKMKED 29 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 376
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=25.18 E-value=9.2e+02 Score=28.62 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=59.6
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecC--CCcEEEEEec----CcEEEEEEcCCc
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS--GVNVELVACG----EYHTCAVTRSGD 316 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G----~~hs~aLT~dG~ 316 (992)
.|..|+.. +...+.-..||.|..|-.... ....+..+. ...|..|+.. ....+....||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 35555543 334455567899999953210 112222222 2367777764 456666778999
Q ss_pred EEEEcCCCCCCCccCCCCCccccccceeccCCCCCcEEEEEECc----ceeEEEecCCeEEEEecC
Q 001953 317 LYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL----WHTAVVTSAGHLFTFGDG 378 (992)
Q Consensus 317 VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~----~hs~aLT~dG~Vy~wG~n 378 (992)
|+.|-... +. ..+.... ......|..++... ...+..+.+|.|+.|-..
T Consensus 79 I~vwd~~~---~~---------~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 79 VLIWKEEN---GR---------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEEEEET---TE---------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEECCC---Cc---------ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99995431 10 0011111 12234577776653 355666788999999744
No 377
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=25.17 E-value=6e+02 Score=26.43 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=14.6
Q ss_pred CCcEEEEEEcCCcEEEEeCCC
Q 001953 252 GARHAVLVTKQGEIFSWGEES 272 (992)
Q Consensus 252 G~~hs~~Lt~dG~Vy~WG~N~ 272 (992)
|.-..++++.+|++|+.+.+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCC
Confidence 444566777888888877654
No 378
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=25.10 E-value=11 Score=31.50 Aligned_cols=55 Identities=20% Similarity=0.404 Sum_probs=37.9
Q ss_pred cCcCCCCCCCCCccccccccc-CCCceeeccCCCcccccc-ccCCCCCCCcccChhhH
Q 001953 599 HSVCSSCHNPFGFRRKRHNCY-NCGLVFCKACSSRKSLKA-ALAPSINKPYRVCDDCF 654 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~-~CG~v~C~sCss~k~~~~-~~~~~~~kp~RvC~~C~ 654 (992)
...|..|+++++-.+..-.|. .|...|+..|..-....+ .+.. .+....+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~-e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTA-EASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHH-CTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhc-cCCCcEECcCcc
Confidence 457999999988777778899 999999999976222111 1110 123478999995
No 379
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.06 E-value=1e+02 Score=22.28 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
+.+|..+|++|..+-...+.|+.+.++-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56778888888888777777777776543
No 380
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.91 E-value=1.8e+02 Score=26.38 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=13.3
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+|-||..-+-+.+.+.+++.+.++..+.
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re 59 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444433333
No 381
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=24.90 E-value=1.2e+02 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=22.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001953 848 AEKCKTANEVIKSLTVQLKKMAEKSPEG 875 (992)
Q Consensus 848 ~~~~~~ake~iksLt~qlk~~~e~lp~~ 875 (992)
.+.|+.|++.++.+..+++++++.+|+.
T Consensus 67 ~~~~~~A~~~l~~~~~~~~~L~~~l~~~ 94 (240)
T 1j1j_A 67 PKRCLKAREHFGTVKTHLTSLKTKFPAE 94 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3447778888888888999999999864
No 382
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=24.76 E-value=4e+02 Score=24.23 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=17.5
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
..++.++.+..+...|..++..+..+
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~~~ 44 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERISDQ 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776633
No 383
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.65 E-value=2.7e+02 Score=30.88 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHhhc-CCCCC
Q 001953 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE--AEKCKTANEVIKSLTVQLKKMAEK-SPEGA 876 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ake~iksLt~qlk~~~e~-lp~~~ 876 (992)
+.+|...|+..|+.+. +++...+.++++..++.+| .+=..-|++-|+.|..+|.++-.+ ||.+.
T Consensus 56 ~~ke~~~l~~~v~~~~--------~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~ 122 (365)
T 1gqe_A 56 LGKERSSLEAVVDTLD--------QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGE 122 (365)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCST
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 4455555555554443 3355555667777777654 333466888899999998888766 56553
No 384
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=24.60 E-value=52 Score=34.22 Aligned_cols=48 Identities=21% Similarity=0.484 Sum_probs=29.4
Q ss_pred cCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCC-cccChhhHH
Q 001953 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKP-YRVCDDCFT 655 (992)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp-~RvC~~C~~ 655 (992)
.|..|+..-. ......|-.|...|+..|..+.. . ..++. .+.|+.|..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL-----~-~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPL-----S-SVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCC-----C-SCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCc-----c-cCCCCCCCCCcCCcC
Confidence 4777765432 23566788888888888876432 2 13455 899999953
No 385
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.52 E-value=2.8e+02 Score=27.37 Aligned_cols=10 Identities=0% Similarity=-0.084 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001953 857 VIKSLTVQLK 866 (992)
Q Consensus 857 ~iksLt~qlk 866 (992)
+..+|+.+|+
T Consensus 85 ~~~~L~~~f~ 94 (196)
T 1fio_A 85 QAENSRQRFL 94 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 386
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.51 E-value=1.4e+02 Score=33.51 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
.-++++--+.|++++.+|+++++.|+++.+.. -.-++.++|++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~ 287 (426)
T 1lrz_A 242 YINFDEYIKELNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQ 287 (426)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccHHHHHHHHHHH
Confidence 34677778888888888888888887776422 22355556665554
No 387
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.40 E-value=2.5e+02 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001953 825 HLEAELERTSKQLKTVTAIAEDE 847 (992)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~ 847 (992)
....|++.+|.+++.....++.|
T Consensus 46 dl~seV~~LK~dv~~~L~k~~~e 68 (101)
T 4aj5_1 46 DLHSEVQTLKDDINILLDKARLE 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 388
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.31 E-value=28 Score=30.55 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=33.8
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCcccccc------ccCCCCCCCcccChhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKA------ALAPSINKPYRVCDDC 653 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~------~~~~~~~kp~RvC~~C 653 (992)
....|..|..-- ......||-|+.+|+..|..++-... .+......--+-|..|
T Consensus 14 ~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 14 NDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCcccCcccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 445688888422 23467899999999999987541111 1111123556788888
No 389
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.23 E-value=2.4e+02 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
..+|++.+++|+.+-.+.+.+++.+..++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666665555555555554444433
No 390
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.22 E-value=3.1e+02 Score=22.88 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001953 826 LEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKM 868 (992)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ake~iksLt~qlk~~ 868 (992)
.-.++..+++++-.+-...-|.--|-.+++++|.++.++..++
T Consensus 30 ~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~el 72 (73)
T 3htk_B 30 SMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREADL 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHHhh
Confidence 3455667777777777677777778889999999999887764
No 391
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=19 Score=29.87 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=34.3
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|...|.-..... -..||+.||..|-...... ...|+-|...+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~~~~~~----------~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEV----------RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEE-EETTTEEEEHHHHHHHHHH----------CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEE-EcCCCCEecHHHHHHHHHc----------CCcCCCcCcccccc
Confidence 3557999998875433221 2259999999998754321 13799998776553
No 392
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=24.11 E-value=1.6e+02 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=11.9
Q ss_pred cEEEEEeCCCcEEEEeCC
Q 001953 479 DLSVALTTSGHVYTMGSA 496 (992)
Q Consensus 479 ~htvaLT~dG~Vy~wG~N 496 (992)
.|++++. ++.||++|..
T Consensus 161 ~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceEEEEE-CCEEEEEeCC
Confidence 4555554 7899999953
No 393
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=24.09 E-value=15 Score=30.81 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=35.2
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|...|.-... ..||+.||..|.......... .......|+.|...+...
T Consensus 11 ~~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~---~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVT---SMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSS---SCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhccc---CCCCCCcCCCCCCcCCHh
Confidence 34568889877643221 369999999998754322111 113467899998777653
No 394
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.09 E-value=1.5e+02 Score=25.73 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 001953 854 ANEVIKSLTVQLKKMA 869 (992)
Q Consensus 854 ake~iksLt~qlk~~~ 869 (992)
.|-++..|.-.|-||.
T Consensus 50 lk~l~e~Ld~KI~eL~ 65 (79)
T 3cvf_A 50 VGRAAQLLDVSLFELS 65 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 3445555555554544
No 395
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.99 E-value=35 Score=31.24 Aligned_cols=45 Identities=29% Similarity=0.579 Sum_probs=31.2
Q ss_pred ccCcCCCCCCCCCccccccccc-CCCceeeccCCCccccccccCCCCCCCcccChhhHHhhh
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCY-NCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~-~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~ 658 (992)
+...|..|...|.-. -.. .||+.||..|-..... ..|+.|...+.
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG------------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT------------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc------------CCCcCCCCcCc
Confidence 345799998877421 122 6999999999764421 57999987654
No 396
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.95 E-value=4.1e+02 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 818 ELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
+|...-.+.|.+|-.+.+|+++|...+
T Consensus 39 eLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 39 ELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344555555566666665444
No 397
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.94 E-value=52 Score=27.35 Aligned_cols=29 Identities=28% Similarity=0.809 Sum_probs=22.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
....|..|++..+++ .-.|+ ||..||...
T Consensus 14 ~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred cCCcChhhCCccCcc--CEEee-cCCEecccc
Confidence 346799999987776 45785 999999754
No 398
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=23.92 E-value=5.8e+02 Score=26.53 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.1
Q ss_pred HHHHHhhcC
Q 001953 864 QLKKMAEKS 872 (992)
Q Consensus 864 qlk~~~e~l 872 (992)
+|.+|-|||
T Consensus 112 ~laal~erL 120 (240)
T 4f61_I 112 HFAAMLERL 120 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444444
No 399
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=23.75 E-value=54 Score=36.83 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=32.6
Q ss_pred CceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 40 YQSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 40 ~~~fs~i~--~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
..||-|+. +.+++=|-|.|.+|.+.||..|+..+...
T Consensus 362 ~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 362 RYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp SSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred CceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 36999998 45799999999999999999999998754
No 400
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.73 E-value=19 Score=33.70 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred ceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 52 LDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 52 LdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
.+|+..+-+|...|+.|||.||.-.
T Consensus 85 ~~l~t~~~~E~~~Wm~GlKrLI~~a 109 (118)
T 2yru_A 85 RSLMVDHVTEVSQWMVGVKRLIAEK 109 (118)
T ss_dssp HHHHHSTHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHhHHHHHHHHHHHH
Confidence 4788999999999999999999753
No 401
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=23.57 E-value=2.6e+02 Score=27.34 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHhhcC
Q 001953 805 LNQEIIKLRAQVEELTSKSEHL--EAELERTSKQLKTVTAIAEDEAEKC----------KTANEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ake~iksLt~qlk~~~e~l 872 (992)
..+|+++|-.++..+-++.... -..+.++++-+++-+..|.+.+=+. .--=.+||-+..+|-+|++.|
T Consensus 49 ~~e~L~~Ll~~I~~~G~rL~~~~t~~~l~~YK~lVK~FL~~vv~~~~~l~~~~~~~~G~~r~y~iVk~ID~kL~eLt~~l 128 (162)
T 2p61_A 49 FEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLTEKI 128 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCceeEEeehHHhHHHHHHHHHH
Confidence 3466777777666665554332 2577899999999888887776665 223478999999999999986
Q ss_pred CCCC
Q 001953 873 PEGA 876 (992)
Q Consensus 873 p~~~ 876 (992)
-.+.
T Consensus 129 l~~e 132 (162)
T 2p61_A 129 MKNE 132 (162)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5543
No 402
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.54 E-value=2.3e+02 Score=23.07 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001953 812 LRAQVEELT 820 (992)
Q Consensus 812 ~~~~~~~~~ 820 (992)
|+.+|+.|.
T Consensus 28 Le~~v~~L~ 36 (63)
T 2wt7_A 28 LQAETDQLE 36 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 403
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.45 E-value=1.1e+02 Score=25.28 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001953 811 KLRAQVEELT 820 (992)
Q Consensus 811 ~~~~~~~~~~ 820 (992)
.|+.+|+.|+
T Consensus 34 ~Le~~v~~L~ 43 (63)
T 2dgc_A 34 QLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 404
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=23.43 E-value=6.7e+02 Score=26.42 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=108.0
Q ss_pred CEEEEEe-CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecC--cEEEEEEcCCcEEEEc
Q 001953 245 DVHNIAC-GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGE--YHTCAVTRSGDLYTWG 321 (992)
Q Consensus 245 ~I~~Ia~-G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~--~hs~aLT~dG~VysWG 321 (992)
.|..|+. .....++-..+|.|..|-......+. .......-....|..|+... .+.+.-..+|.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLL--------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC--------C--------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccceeE--------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3666653 33455556778888888432211110 00000001123566666543 3444456788999995
Q ss_pred CCCCCCCccCCCCCccccccceeccCCCCCcEEEEEEC---cceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEe
Q 001953 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCG---LWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVE 398 (992)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG---~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~ 398 (992)
... ++ ....+. .....|..|+.. ....+....||.|..|-......+. .+.
T Consensus 168 ~~~---~~----------~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-----------~~~ 221 (357)
T 4g56_B 168 LSQ---KA----------VLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-----------RID 221 (357)
T ss_dssp TTT---TE----------EEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-----------BCC
T ss_pred CCC---Cc----------EEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-----------eee
Confidence 442 11 011111 122346667653 2344555678999998432211100 000
Q ss_pred -eccCCeEEEEEeCC--ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEe
Q 001953 399 -TLRGLRTTRVSCGV--WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVA 475 (992)
Q Consensus 399 -~l~~~~I~~VacG~--~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia 475 (992)
......+..|+... .+.++. - ..++.|+.|--.. +++ ...+. .....|..|+
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~-g------------~~d~~i~~wd~~~-~~~----------~~~~~-~~~~~v~~l~ 276 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFAC-G------------DETGNVSLVNIKN-PDS----------AQTSA-VHSQNITGLA 276 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEE-E------------ESSSCEEEEESSC-GGG----------CEEEC-CCSSCEEEEE
T ss_pred eccccccccchhhhhcccceEEE-e------------ecccceeEEECCC-CcE----------eEEEe-ccceeEEEEE
Confidence 01122355555432 222332 1 4558888884322 110 11111 1234566665
Q ss_pred ec---CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEc---CCEEEEEEcCCcEEEEEcCC
Q 001953 476 CG---HDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACG---AYHVAALTSTSKVYTWGKGA 549 (992)
Q Consensus 476 ~G---~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G---~~Ht~aLt~~G~Vy~WG~N~ 549 (992)
.. ....+.-..||.|+.|-... |+ ..... -....|..|+.- ....+.-..||.|+.|=...
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~-~~----------~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADF-SE----------VFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTS-CE----------EEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCC-Cc----------EeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 43 33344456789999994321 21 11111 123458888764 23334446789999996544
Q ss_pred CC
Q 001953 550 NG 551 (992)
Q Consensus 550 ~G 551 (992)
.|
T Consensus 344 ~~ 345 (357)
T 4g56_B 344 EG 345 (357)
T ss_dssp --
T ss_pred CC
Confidence 33
No 405
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.32 E-value=2.1e+02 Score=27.19 Aligned_cols=35 Identities=11% Similarity=0.336 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (992)
..++|.+.+..|++|++.|.+..+..+.+++.+++
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443
No 406
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.26 E-value=2.5e+02 Score=28.83 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=24.5
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (992)
++.|++..+.|...+.+++|..++++++.+.+-.++.+
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~ 105 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666777777777877777665554443
No 407
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.09 E-value=51 Score=30.22 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=33.1
Q ss_pred cCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHH
Q 001953 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (992)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~ 655 (992)
.|..|+..-.-.....-|..|...|+..|..+.+. ..++..++|..|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~------~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT------RMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS------SCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCC------CCCCCCeECCCCCC
Confidence 46666654223345677999999999999864422 24566899999953
No 408
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.07 E-value=2.6e+02 Score=22.09 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELER 832 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~ 832 (992)
+..|+.|+..|..+=+....-+++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554433333333
No 409
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.87 E-value=39 Score=29.77 Aligned_cols=55 Identities=20% Similarity=0.434 Sum_probs=39.3
Q ss_pred ccCcCCCCCCCCC-cccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhcc
Q 001953 598 DHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (992)
Q Consensus 598 d~s~C~~C~~~Fs-f~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~ 660 (992)
+...|..|+...+ -.....-|..|...|+..|.... + .++..++|+.|.......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~-----~---vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y---IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS-----S---CCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC-----c---cCCCceECccccCccchh
Confidence 3457999987642 33456779999999999997643 1 345789999998765443
No 410
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.87 E-value=1.3e+02 Score=32.88 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 809 IIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (992)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (992)
|....++++.|+.+.+.++.+|++++++|.+...
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555555555555554443
No 411
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=22.71 E-value=75 Score=29.21 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.7
Q ss_pred CceEEEEEcC-CCceeeeCCHHHHHHHHHHHHHHHh
Q 001953 40 YQSFSLIYND-RSLDLICKDKDEAEVWLVGLKALIT 74 (992)
Q Consensus 40 ~~~fs~i~~~-~sLdLi~~~~~ea~~W~~gL~~l~~ 74 (992)
..+|.|+-.+ +..=|-|.|.+|++.||..|+.-|.
T Consensus 88 k~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 88 KNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5789988743 5666889999999999999998763
No 412
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.67 E-value=7.8 Score=31.54 Aligned_cols=54 Identities=20% Similarity=0.510 Sum_probs=33.1
Q ss_pred cCcCCCCCC-CCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 599 HSVCSSCHN-PFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 599 ~s~C~~C~~-~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
...|..|.. .|.-...+.--..||+.||..|....... ....|+.|...+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR---------GAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT---------TSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc---------CCCcCCCCCCcccccc
Confidence 346888877 44322211122479999999997644221 2356999988776543
No 413
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.38 E-value=1.1e+02 Score=24.76 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=38.3
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHh
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~ 656 (992)
.+...|..|+.++.-....-.|..|..-|+..|..-..... ......+|..|..+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~-----~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARA-----EHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGG-----GGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHh-----cCCCcEECCCCcCc
Confidence 34566889999876555667799999999999976332111 11246899999764
No 414
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=22.34 E-value=6.8e+02 Score=26.10 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=110.4
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec--CcEEEEEEcCCcEEEE
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG--EYHTCAVTRSGDLYTW 320 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysW 320 (992)
.|..|+.. ....+.-..+|.|+.|-. .|.+ ...+. .....|..++.. ..+.+....+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~~----------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--TGAL----------LNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TSCE----------EEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCe----------eeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 56666654 345566678899999951 1110 11111 112356666654 3456666778999999
Q ss_pred cCCCCCCCccCCCCCcccccccee---ccCCCCCcEEEEEE-CcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeE
Q 001953 321 GDGTYNSGLLGHGSKVSCWIPRKV---SGNLDGIHLSYISC-GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPRE 396 (992)
Q Consensus 321 G~n~~~~GqLG~g~~~~~~~P~~v---~~~l~~~~Iv~Vac-G~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~ 396 (992)
-.... ..+..-.... ..+..+ .....+..+..++. .....++.+.+|.|+.|-...... ...
T Consensus 177 d~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~~ 242 (425)
T 1r5m_A 177 NVISG--TVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TGK 242 (425)
T ss_dssp ETTTT--EEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SEE
T ss_pred ECCCC--cEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------eee
Confidence 65421 1100000000 000000 00000000211211 123455667788888886443111 111
Q ss_pred EeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEee
Q 001953 397 VETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVAC 476 (992)
Q Consensus 397 V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~ 476 (992)
+.. ....|..++.......+++. ..+|.|+.|-..... ....+. .....|..++.
T Consensus 243 ~~~-~~~~i~~~~~~~~~~~l~~~------------~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~ 297 (425)
T 1r5m_A 243 LIG-HHGPISVLEFNDTNKLLLSA------------SDDGTLRIWHGGNGN-----------SQNCFY-GHSQSIVSASW 297 (425)
T ss_dssp ECC-CSSCEEEEEEETTTTEEEEE------------ETTSCEEEECSSSBS-----------CSEEEC-CCSSCEEEEEE
T ss_pred ecc-CCCceEEEEECCCCCEEEEE------------cCCCEEEEEECCCCc-----------cceEec-CCCccEEEEEE
Confidence 111 12245555543333223321 445889988533210 011111 12334555554
Q ss_pred cCc-EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEcC--CEEEEEEcCCcEEEEEcC
Q 001953 477 GHD-LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA--YHVAALTSTSKVYTWGKG 548 (992)
Q Consensus 477 G~~-htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~--~Ht~aLt~~G~Vy~WG~N 548 (992)
... ..++...+|.|+.|-.... .....+. .....|..++... ...++-..+|.|+.|-..
T Consensus 298 ~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 298 VGDDKVISCSMDGSVRLWSLKQN----------TLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ETTTEEEEEETTSEEEEEETTTT----------EEEEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEECCCC----------cEeEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 322 5566677888888875321 1111111 1234566766653 455556678999999653
No 415
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=22.16 E-value=7.3e+02 Score=26.80 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=16.4
Q ss_pred CcEEEEEec---CcEEEEEEcCCcEEEEcCC
Q 001953 296 VNVELVACG---EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 296 ~~I~~Va~G---~~hs~aLT~dG~VysWG~n 323 (992)
..|..|+.. ....+.-..||.|..|-..
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence 357777653 2233334578888888543
No 416
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=21.97 E-value=1e+03 Score=28.12 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=41.8
Q ss_pred CEEEEEeC----CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec----CcEEEEEEcCCc
Q 001953 245 DVHNIACG----ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG----EYHTCAVTRSGD 316 (992)
Q Consensus 245 ~I~~Ia~G----~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G----~~hs~aLT~dG~ 316 (992)
.|..|+.. ....+....||.|+.|-..... ..+..........|..|+.. ....+..+.+|.
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 57777653 4566677889999999643210 00111111123467777665 346677778999
Q ss_pred EEEEcCC
Q 001953 317 LYTWGDG 323 (992)
Q Consensus 317 VysWG~n 323 (992)
|+.|-..
T Consensus 125 I~vwdl~ 131 (753)
T 3jro_A 125 VSVVEFK 131 (753)
T ss_dssp EEEEECC
T ss_pred EEEEEee
Confidence 9999654
No 417
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=21.94 E-value=22 Score=28.99 Aligned_cols=53 Identities=13% Similarity=0.313 Sum_probs=34.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
+...|..|...|.-.. ......||+.||..|....... ...|+-|...+....
T Consensus 13 ~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~----------~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLIT----------NKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHH----------CSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHc----------CCCCcCcCccccCcC
Confidence 3457999988774322 2233469999999997654322 124999987766543
No 418
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.90 E-value=3.2e+02 Score=25.49 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=26.5
Q ss_pred chHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (992)
..|.....|+..|+.|+.++++++.+....+..|..+.......+
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l 79 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL 79 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344445556777777777877777777777776666655544444
No 419
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.83 E-value=2.5e+02 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (992)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (992)
..+..++.++++++..++.+.+...++++.+++.++..-.+.+
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~ 107 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQ 107 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888889888888888888888888888776665543
No 420
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.79 E-value=4.6e+02 Score=29.81 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 001953 855 NEVIKSLTVQLKKMAEKS 872 (992)
Q Consensus 855 ke~iksLt~qlk~~~e~l 872 (992)
|+.||..+.=.|+++|++
T Consensus 428 KDAVkfTAdFykkIsEky 445 (602)
T 1cii_A 428 KDAINFTTEFLKSVSEKY 445 (602)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 421
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=21.66 E-value=1e+02 Score=33.04 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCceEEEEEc-----CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 001953 39 EYQSFSLIYN-----DRSLDLICKDKDEAEVWLVGLKALITR 75 (992)
Q Consensus 39 ~~~~fs~i~~-----~~sLdLi~~~~~ea~~W~~gL~~l~~~ 75 (992)
+.++|.|+++ +.++-|.|+|++|-+.|+..|+.+|..
T Consensus 268 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 268 DPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp CTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 4689999983 357889999999999999999999864
No 422
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.60 E-value=53 Score=28.09 Aligned_cols=28 Identities=32% Similarity=0.880 Sum_probs=21.8
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
...|..|+...+++ .-.| .||..||...
T Consensus 25 ~~RC~~C~kkvgL~--~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT--GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT--CEEC-TTSCEECTTT
T ss_pred CccchhhcCccccc--ceEe-ccCCEecccc
Confidence 45699999887776 4678 5999999754
No 423
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=21.44 E-value=87 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCceEEEEE----cCCCceeeeCCHHHHHHHHHHHHHHHhcC
Q 001953 38 KEYQSFSLIY----NDRSLDLICKDKDEAEVWLVGLKALITRG 76 (992)
Q Consensus 38 ~~~~~fs~i~----~~~sLdLi~~~~~ea~~W~~gL~~l~~~~ 76 (992)
.+...|.||+ |.+.+.|.|.+++|-+.|+.-++.-|+..
T Consensus 132 ~d~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 132 HEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp SCSSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 3568999998 45799999999999999999999888764
No 424
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.40 E-value=1e+03 Score=27.81 Aligned_cols=68 Identities=13% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CEEEEEeC--CcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEecC---cEEEEEEcCCcEEE
Q 001953 245 DVHNIACG--ARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGE---YHTCAVTRSGDLYT 319 (992)
Q Consensus 245 ~I~~Ia~G--~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~---~hs~aLT~dG~Vys 319 (992)
.|..++.. ..+.+....+|.|..|-...... ......-....|..++... ...+....+|.|+.
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 35555543 34556667789999996432111 1111111234577776543 35555667899999
Q ss_pred EcCC
Q 001953 320 WGDG 323 (992)
Q Consensus 320 WG~n 323 (992)
|-..
T Consensus 168 wd~~ 171 (814)
T 3mkq_A 168 WSLG 171 (814)
T ss_dssp EETT
T ss_pred EECC
Confidence 9643
No 425
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.37 E-value=2e+02 Score=24.30 Aligned_cols=11 Identities=36% Similarity=0.326 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001953 810 IKLRAQVEELT 820 (992)
Q Consensus 810 ~~~~~~~~~~~ 820 (992)
..|..+|..|.
T Consensus 32 ~~LE~~v~~le 42 (70)
T 1gd2_E 32 KALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 426
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=21.37 E-value=4.3e+02 Score=25.54 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCC
Q 001953 811 KLRAQVEELTSKSEHLEAELERTSKQLKT----------------VTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPE 874 (992)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ake~iksLt~qlk~~~e~lp~ 874 (992)
.|++++..+..+|++.+.+.++.-+.++. .-.....|-++. .|-++-|+.||..+ ++||-
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r---~e~k~~l~~ql~qv-~~L~l 108 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSEL---EEQKRNLLQQQAQV-RELEM 108 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hcCCC
Confidence 45566666667777777666665444432 223344444444 45567778888775 67888
Q ss_pred CC
Q 001953 875 GA 876 (992)
Q Consensus 875 ~~ 876 (992)
|.
T Consensus 109 Gs 110 (150)
T 4dci_A 109 DQ 110 (150)
T ss_dssp TC
T ss_pred cC
Confidence 73
No 427
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=21.35 E-value=13 Score=36.44 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=34.0
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
+...|..|...|.- ..-+..||+.||..|-..... .....|+.|...+..
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~---------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALR---------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH---------TTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH---------hCcCCCCCCCCcCCC
Confidence 34469999877653 222347999999999775432 124679999887643
No 428
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.29 E-value=19 Score=29.78 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=34.5
Q ss_pred ccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 598 DHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 598 d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
+...|..|...|.-. .....||+.||..|-...... ...|+.|...+....
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY----------SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH----------CSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc----------CCcCCCcCcccCccc
Confidence 345699998776531 122379999999997654321 357999988877654
No 429
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.21 E-value=44 Score=30.97 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 001953 801 MNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
+.|.+++|+++|..++..++.+
T Consensus 4 Mke~~K~Eiq~L~drLD~~~rK 25 (123)
T 2lf0_A 4 MKEVEKNEIKRLSDRLDAIRHQ 25 (123)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999988877765
No 430
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.21 E-value=2.4e+02 Score=22.58 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (992)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (992)
+.|.||+..-..|..|-++.+...-+-.+.+....++.+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444444433
No 431
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.19 E-value=1.7e+02 Score=25.99 Aligned_cols=44 Identities=9% Similarity=0.274 Sum_probs=29.4
Q ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (992)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (992)
.+.....+.|+..+..+...++.|..+.+..+.+++.+++++.+
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666677777777777777777777777664
No 432
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=21.12 E-value=8.6e+02 Score=26.83 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred eeEEEecCCeEEEEecCCCCCCCCCCCcCC---------CcCeEEeeccCCeEEEEEeCCceEEEEEEccCCCCCCCCCC
Q 001953 362 HTAVVTSAGHLFTFGDGSFGALGHGDHIST---------SIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGS 432 (992)
Q Consensus 362 hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~---------~~P~~V~~l~~~~I~~VacG~~ht~aLve~~~~~~~~~~~s 432 (992)
..++++..+.++.-|.+..-.+ ....... ..|.....+.+ |.+|++ ....+++
T Consensus 41 nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v-------------- 102 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLV-------------- 102 (388)
T ss_dssp BCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEE--------------
T ss_pred cEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEE--------------
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccee
Q 001953 433 TSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPT 512 (992)
Q Consensus 433 t~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~ 512 (992)
..+|.|..| +.........+..+... +.+|.+-....++++.+|.|+.|--.. ...-.
T Consensus 103 ~~~~~l~v~-----------dv~sl~~~~~~~~~~~~-v~~i~~~~p~~av~~~dG~L~v~dl~~----------~~~~~ 160 (388)
T 1xip_A 103 STRNALYSL-----------DLEELSEFRTVTSFEKP-VFQLKNVNNTLVILNSVNDLSALDLRT----------KSTKQ 160 (388)
T ss_dssp EESSEEEEE-----------ESSSTTCEEEEEECSSC-EEEEEECSSEEEEEETTSEEEEEETTT----------CCEEE
T ss_pred EcCCcEEEE-----------EchhhhccCccceeecc-eeeEEecCCCEEEEECCCCEEEEEccC----------Ccccc
Q ss_pred eecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEE
Q 001953 513 RVDGEIAESFVEEVACGAYHVAALTSTSKVYTW 545 (992)
Q Consensus 513 ~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~W 545 (992)
.... |..|+....-.++...+|.+..|
T Consensus 161 ~~~~------Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 161 LAQN------VTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp EEES------EEEEEECSSEEEEEETTSCEEEE
T ss_pred ccCC------ceEEEEcCCceEEEEcCCcEEEE
No 433
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.01 E-value=1.4e+02 Score=34.43 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=19.1
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSK 822 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (992)
...|-+.+.-+..-|.+|++|++++.+.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777777766443
No 434
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.01 E-value=23 Score=31.83 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=32.5
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
...|..|...|.-.. ...||+.||..|-...... ......|+.|...+..
T Consensus 21 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~-------~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPV----STKCDHIFCKFCMLKLLNQ-------KKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCC----BCTTSCCCCSHHHHHHHHS-------SSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeE----ECCCCCHHHHHHHHHHHHh-------CCCCCCCcCCCCcCCH
Confidence 457999988774222 1369999999997644321 1223579999765554
No 435
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.77 E-value=4.9e+02 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHH
Q 001953 802 NDSLNQEIIKLRA 814 (992)
Q Consensus 802 ~~~~~~~~~~~~~ 814 (992)
-+.|+.|.++|.+
T Consensus 11 l~~Leae~q~L~~ 23 (119)
T 3etw_A 11 LQALDAEYQNLAN 23 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666655
No 436
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=20.73 E-value=20 Score=30.11 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=33.6
Q ss_pred cccCcCCCCCCCCCcccccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
.+...|..|...|.-.. ...||+.||..|-..... .....|+.|...+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv----~~~CgH~fc~~Ci~~~~~---------~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV----IVSTGQTYERSSIQKWLD---------AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEE----EETTTEEEEHHHHHHHHT---------TTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCE----EcCCCCeecHHHHHHHHH---------HCcCCCCCCcCCCCh
Confidence 34567999998875322 236999999999764421 124679988876654
No 437
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=37 Score=28.99 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=38.2
Q ss_pred ccccccccCcCCCCCCCCCcc----------cc-cccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhc
Q 001953 592 KWVSSVDHSVCSSCHNPFGFR----------RK-RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (992)
Q Consensus 592 kwv~~~d~s~C~~C~~~Fsf~----------r~-rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~ 659 (992)
.|-++.+...|..|...|.-. .. ...-..||+.||..|-..-... ...|+-|...+..
T Consensus 8 ~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 8 MWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----------NNRCPLCQQDWVV 76 (81)
T ss_dssp CCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----------CCBCTTTCCBCCE
T ss_pred EeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----------CCCCCCcCCCcch
Confidence 366667788899999988531 11 1122369999999997644211 2479999876544
No 438
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=20.32 E-value=3.3e+02 Score=22.98 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=30.5
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (992)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (992)
.|++....+.+++=+.+|+..++..++.......+++.--..++....++
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l 85 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMM 85 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHH
Confidence 46777777777777777777666655555555555555544444444333
No 439
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.21 E-value=49 Score=28.32 Aligned_cols=28 Identities=29% Similarity=0.835 Sum_probs=21.8
Q ss_pred cCcCCCCCCCCCcccccccccCCCceeeccC
Q 001953 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (992)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~v~C~sC 629 (992)
...|..|+...+++. -.|+ ||..||...
T Consensus 25 ~nRC~~CrKkvgL~g--f~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG--FDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGGC--EECT-TSCEECSSS
T ss_pred CCcChhhCCcccccC--eecC-CCCEechhc
Confidence 356999999877653 5799 999999754
No 440
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.14 E-value=4.6e+02 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=9.8
Q ss_pred chHhhhhhHHHHHHHHHHHH
Q 001953 797 DSKQMNDSLNQEIIKLRAQV 816 (992)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~ 816 (992)
+|+..++.|..|+..++.+.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433
No 441
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.14 E-value=1.5e+02 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=39.4
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001953 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (992)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (992)
...+-++++.+.|+..+.+|+.+++.++.+......+|++..+++
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 557889999999999999999999999999999999998887653
No 442
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=20.13 E-value=8.8e+02 Score=26.58 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=69.8
Q ss_pred EEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCCccccEEeeecCCCcEEEEEec-----CcEEEEEEcCCcEEEEcCC
Q 001953 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACG-----EYHTCAVTRSGDLYTWGDG 323 (992)
Q Consensus 249 Ia~G~~hs~~Lt~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysWG~n 323 (992)
++.+..+.+++|+.|++|.+-...--..|.... -...-.++..-.+..|+.+..- ..+.+++|++|.+.-.--.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 455667788999999999987543222221100 0011111222346678877653 3478899999988766544
Q ss_pred CCCCCccCCCCCccccccceeccCCCCCcEEEE--EECcceeEEEecCCeEEEEecCCCCCCC
Q 001953 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYI--SCGLWHTAVVTSAGHLFTFGDGSFGALG 384 (992)
Q Consensus 324 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~V--acG~~hs~aLT~dG~Vy~wG~n~~GqLG 384 (992)
.|.. .. ..- .......++..++.+ ..+..+.+++|++|++..|-...--.+|
T Consensus 132 e~~~--~~----~~G---~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 132 EFAF--RL----ARG---KIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGCS--CC----TTC---EESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred Hhhc--cc----CCc---eEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 3311 00 000 001111223344433 3466789999999999999655444443
No 443
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=20.12 E-value=28 Score=29.82 Aligned_cols=55 Identities=22% Similarity=0.568 Sum_probs=36.1
Q ss_pred cccCcCCCCCCCCCccc-ccccccCCCceeeccCCCccccccccCCCCCCCcccChhhHHhhhccc
Q 001953 597 VDHSVCSSCHNPFGFRR-KRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (992)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r-~rh~C~~CG~v~C~sCss~k~~~~~~~~~~~kp~RvC~~C~~~l~~~~ 661 (992)
.+...|..|-.++.... .-..| .||+.||..|...... .....|+.|...+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~---------~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT---------DENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT---------SSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh---------cCCCCCCCCCCccCCCc
Confidence 34557999998876432 22233 5999999999763321 13467999988776543
No 444
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.01 E-value=1.9e+02 Score=25.23 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=11.5
Q ss_pred cchHhhhhhHHHH--HHHHHHHHHHHHHH
Q 001953 796 DDSKQMNDSLNQE--IIKLRAQVEELTSK 822 (992)
Q Consensus 796 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 822 (992)
+.+.++..-+..+ -++-+.|++.|+.+
T Consensus 20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkk 48 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARAKEQLAALKKH 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 23333344444433
Done!