Query 001954
Match_columns 992
No_of_seqs 243 out of 1112
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1E-168 3E-173 1557.9 85.4 829 124-992 27-900 (900)
2 KOG1041 Translation initiation 100.0 1E-149 2E-154 1376.2 77.2 824 127-992 42-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 1E-126 3E-131 1062.0 57.3 719 135-948 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1E-101 2E-106 898.0 41.8 420 496-946 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 7.1E-95 1.5E-99 848.9 45.8 439 464-943 2-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.3E-87 2.7E-92 773.8 42.2 384 509-944 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2.5E-72 5.4E-77 627.8 27.3 299 626-947 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 8.7E-47 1.9E-51 437.4 27.6 285 602-943 94-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 7.6E-23 1.7E-27 201.2 9.3 133 338-475 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 5.4E-20 1.2E-24 175.6 12.5 113 338-451 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 8.5E-20 1.8E-24 174.1 11.0 112 337-451 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 2.8E-17 6.1E-22 156.4 9.1 105 338-451 2-114 (117)
13 PF08699 DUF1785: Domain of un 99.5 3.9E-15 8.5E-20 120.0 3.0 52 285-337 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 3.3E-13 7.2E-18 131.3 6.2 83 365-451 27-132 (135)
15 COG1431 Argonaute homolog, imp 99.2 1.1E-09 2.4E-14 124.4 19.2 299 568-944 356-668 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.4 4.3E-07 9.3E-12 85.6 6.1 68 366-436 38-106 (122)
17 PF13032 DUF3893: Domain of un 89.8 0.66 1.4E-05 45.8 5.9 57 888-948 66-122 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 82.7 5.6 0.00012 40.1 8.2 104 702-841 10-120 (155)
19 PRK11617 endonuclease V; Provi 78.2 32 0.0007 36.8 12.5 39 901-946 179-217 (224)
20 TIGR00194 uvrC excinuclease AB 75.3 19 0.00041 44.2 11.1 109 704-846 382-498 (574)
21 PRK14672 uvrC excinuclease ABC 70.3 33 0.00072 42.5 11.5 108 702-844 453-564 (691)
22 PRK14667 uvrC excinuclease ABC 59.8 62 0.0013 39.7 11.1 106 702-844 360-470 (567)
23 PRK12306 uvrC excinuclease ABC 59.5 72 0.0016 38.7 11.5 106 703-845 366-476 (519)
24 PRK14670 uvrC excinuclease ABC 58.9 81 0.0018 38.7 11.9 110 702-844 357-471 (574)
25 PRK14671 uvrC excinuclease ABC 56.2 79 0.0017 39.3 11.4 107 702-845 414-525 (621)
26 PRK00558 uvrC excinuclease ABC 51.1 1E+02 0.0023 38.1 11.3 100 702-837 382-486 (598)
27 PRK14669 uvrC excinuclease ABC 49.9 1.2E+02 0.0025 37.8 11.4 107 702-844 395-506 (624)
28 PRK14666 uvrC excinuclease ABC 48.5 1.2E+02 0.0027 37.9 11.1 100 702-836 471-571 (694)
29 cd06559 Endonuclease_V Endonuc 40.7 1.3E+02 0.0029 31.9 8.7 42 889-940 166-207 (208)
30 PRK14668 uvrC excinuclease ABC 37.4 2E+02 0.0042 35.6 10.6 98 703-838 375-479 (577)
31 PF09373 PMBR: Pseudomurein-bi 25.5 72 0.0016 23.3 2.6 19 775-793 15-33 (33)
32 COG0322 UvrC Nuclease subunit 24.3 4.7E+02 0.01 32.4 10.6 107 702-844 378-486 (581)
33 cd01457 vWA_ORF176_type VWA OR 21.1 4.6E+02 0.0099 27.1 8.8 68 765-837 80-152 (199)
34 PF00763 THF_DHG_CYH: Tetrahyd 20.8 3.4E+02 0.0074 25.9 7.0 58 621-680 27-85 (117)
35 KOG3123 Diphthine synthase [Tr 20.7 1.4E+02 0.0031 31.4 4.5 97 547-659 69-165 (272)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.2e-168 Score=1557.86 Aligned_cols=829 Identities=38% Similarity=0.668 Sum_probs=706.2
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEeeEEEeec--CCCceeeEeEEEccC----CCChHHHHHHHHHHHHHhcccccCCCcc
Q 001954 124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITPE----VASRTVNRAIMAELVRLYKESDLGMRLP 197 (992)
Q Consensus 124 ~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~iy~YdV~i~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 197 (992)
++....+++|||||+.|++|.|+||||+|.+ ++..||||||+|.|+ +.+++++++|++++++++.. .+.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence 4445578999999999999999999999997 467899999999963 44567788999999887644 3555578
Q ss_pred eeeCcceEEEecccCCCceeEEEEeeccccC-------------CCC--------CCcccEEEEEEEEeeeechhhHHHH
Q 001954 198 AYDGRKSLYTAGELPFVWKEFKIKLVDELDG-------------ING--------PKRVREYKVVIKFAARANMHHLGQF 256 (992)
Q Consensus 198 ~yDG~k~lys~~~Lp~~~~~f~V~l~~~~~~-------------~~~--------~~~~~~f~V~Ik~~~~i~l~~l~~~ 256 (992)
+|||+++|||+.+||.+..+|.|++.+++.. .+. ..+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998766788887643110 000 1246889999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHhhhcCC-ccccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeeccccccc
Q 001954 257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI 335 (992)
Q Consensus 257 l~g~~~~~~~~~iq~LniIlr~~~~~~-~~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~ 335 (992)
|.|...+.+.++||+||+|||+.++.. ++.+||+||.++.....++++|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999988888999999999999998665 8999999998654444579999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCC--------C
Q 001954 336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S 407 (992)
Q Consensus 336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~--------g 407 (992)
++++|+|+|.++.+..+ ....++.++.++|+|++|.++|++ +.|+|.||++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765421 112356679999999999999973 56999999999999999986531 3
Q ss_pred cceeHHHHHHHHhCccccCC-CCCceeeCCCCccccccccceeecCCcccccCCCHHHHHHHHhhhcCCchhhHHHHHHH
Q 001954 408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT 486 (992)
Q Consensus 408 ~~iSV~eYF~~~Y~i~L~~p-~lPll~~g~~~k~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~ 486 (992)
+.+||+|||+++|||+|+|| ++|||++|+..+++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46899999999999999996 99999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCccccccccceEEcccceEEEeEEcCCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCCcc
Q 001954 487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ 566 (992)
Q Consensus 487 ~~~~~~~~~~~l~~fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~ 566 (992)
++.++++.+++|++|||+|+++|++|+|||||+|.|.|+++. .+.|++|+||+++++|+.++.+++|++|++.+.
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 888888888999999999999999999999999999998753 246789999999999999999999999988653
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCcccccC------CChhHHHHHHHHHHHhhcccccCCCceEEEEEecCC-CCchh
Q 001954 567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHN------ARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLY 639 (992)
Q Consensus 567 ~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~-~~~~Y 639 (992)
..+++|++.|.+.|+.+||.+..+..+.... ...+.++..++.+.+. .+ ..++|||||||++ +.++|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-~~~qlv~vIlp~~~~~~~Y 567 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSK----LP-GPPQFLLCILPERKNSDIY 567 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHh----cc-CCCeEEEEEEcCCCCcchH
Confidence 2578999999999999999998754321111 0112344444443332 11 4689999999974 67899
Q ss_pred hhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCC
Q 001954 640 GDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGED 719 (992)
Q Consensus 640 ~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~ 719 (992)
+.||++||+++||+||||... +.++||+.|||||||+||||+||.+....+..+|++.+.+|||||+||+||+++..
T Consensus 568 ~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~ 644 (900)
T PLN03202 568 GPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQS 644 (900)
T ss_pred HHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCC
Confidence 999999999999999999654 34789999999999999999999887554455788777899999999999998864
Q ss_pred CCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHc-CCCCceEEEEeCCC
Q 001954 720 SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKAT-GQKPLRIIFYRDGV 798 (992)
Q Consensus 720 ~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~-g~~P~~IIiyRDGV 798 (992)
..|||||+|||+|++.+++|++.++.|.+++|+|++|++...+ ..+++|+.++|+.|++.+ +.+|++||||||||
T Consensus 645 ~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGV 720 (900)
T PLN03202 645 DVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGV 720 (900)
T ss_pred CCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCC
Confidence 5799999999999767899999999999999999987421111 125889999999999865 69999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEE
Q 001954 799 SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFY 878 (992)
Q Consensus 799 SEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFy 878 (992)
|||||.+|+++|+++|++||++++++|+|+||||||+||||+|||+.+ +.+||+||||||++||||..||||
T Consensus 721 seGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFy 792 (900)
T PLN03202 721 SESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFY 792 (900)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEE
Confidence 999999999999999999999999899999999999999999999863 358999999999999999999999
Q ss_pred EeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCccccCCCCCCC
Q 001954 879 LCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDG 958 (992)
Q Consensus 879 L~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~~~~~ 958 (992)
||||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||..+.++.+++++
T Consensus 793 L~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~ 872 (900)
T PLN03202 793 MCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSH 872 (900)
T ss_pred EecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854322222211
Q ss_pred CCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001954 959 SGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
++ +++. +..+...++.||+||+++||||
T Consensus 873 ~~--~~~~----~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 873 GG--ITSA----GAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred cc--cCCC----CccccccccccchhhcCCeeeC
Confidence 11 1111 1111234678999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-150 Score=1376.17 Aligned_cols=824 Identities=41% Similarity=0.646 Sum_probs=706.0
Q ss_pred cccCCCCCCCCCCCCeEEEEeeEEEeec--CCCc-eeeEeEEEccCCCChHHHH-HHHHHHHHHhcccccCCCcceeeCc
Q 001954 127 SLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKD-LNQYDVTITPEVASRTVNR-AIMAELVRLYKESDLGMRLPAYDGR 202 (992)
Q Consensus 127 ~~~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~-iy~YdV~i~p~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~ 202 (992)
....+.||+.|+.|++|.|.+|||.+++ ++.. ++||+|++.++...+++++ .+++.++...+...|....++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 5667789999999999999999999766 5655 9999999999988777775 5666665554434466667789999
Q ss_pred ceEEEecccCC--CceeEEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhhh
Q 001954 203 KSLYTAGELPF--VWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS 280 (992)
Q Consensus 203 k~lys~~~Lp~--~~~~f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~~ 280 (992)
++|||...|+. ...+|.+.++.+. ..|+++|+++..+.+..+..++.+.....+.+++|+|++++++.+
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ 192 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKEW---------KKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIA 192 (876)
T ss_pred ceeEeccccccccceEEEEecCCCCC---------cceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhh
Confidence 99999777774 2233444333221 119999999998888888888888777788999999999999999
Q ss_pred cCC-ccccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeecccccccccccHHHHHHHHhcCCccCCCCCh
Q 001954 281 TKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSD 359 (992)
Q Consensus 281 ~~~-~~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~~r~l~~ 359 (992)
+.. +..+|++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|+++++++++..+ +.+.+
T Consensus 193 s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~ 270 (876)
T KOG1041|consen 193 TSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHK 270 (876)
T ss_pred chhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--ccccc
Confidence 877 999999999863333456899999999999999999999999999999999999999999999988653 23333
Q ss_pred hHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCC-CcceeHHHHHHHHhCccccCCCCCceeeCCCC
Q 001954 360 SDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN-STMKSVVEYFQEMYGFTIQHTHLPCLQVGNQK 438 (992)
Q Consensus 360 ~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~-g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~~ 438 (992)
.....++++|+||+|.++|+ +..|.|+|.+++..++.+.+|++++. +..+||+|||+++||++|+||+||||++|..+
T Consensus 271 ~~~~~~~~~lkgL~v~~~h~-~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~ 349 (876)
T KOG1041|consen 271 DRPLDIKKALKGLKVYVTHG-KRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPK 349 (876)
T ss_pred ccchhHHHHhhCcEEEEecc-cCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCC
Confidence 22233999999999999994 45778999999999999999997764 46789999999999999999999999999999
Q ss_pred ccccccccceeecCCccccc-CCCHHHHHHHHhhhcCCchhhHHHHHHHHHhccCCccccccccceEEcccceEEEeEEc
Q 001954 439 KANYLPMEACKIVEGQRYTK-RLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARIL 517 (992)
Q Consensus 439 k~~ylP~Elc~I~~gQr~~~-kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~aRvL 517 (992)
+.+|+|||+|.|++|||+.+ +|++.|+++|++.+++.|++|.+.|.++++...++.|++|++|||.|.++|+.|+||+|
T Consensus 350 ~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL 429 (876)
T KOG1041|consen 350 RENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVL 429 (876)
T ss_pred CCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEeccccccccccc
Confidence 99999999999999999998 99999999999999999999999999999988888899999999999999999999999
Q ss_pred CCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCccccc
Q 001954 518 PAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597 (992)
Q Consensus 518 p~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~ 597 (992)
|||.|.|+++ .....|..|.|++++++|+.|+.+..|+|++|+...+... +.|+++|++.|+..||.|.. |. ..
T Consensus 430 ~~P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~ 503 (876)
T KOG1041|consen 430 PPPKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KW 503 (876)
T ss_pred CCceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--cc
Confidence 9999999986 2345678999999999999999999999999998654444 89999999999999999976 54 22
Q ss_pred CCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHH
Q 001954 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKI 677 (992)
Q Consensus 598 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKi 677 (992)
....+.++..++.+.... ++ ..++++++||++++..++|+.||++++..+||+||||+.+++.|..+||++||+|||
T Consensus 504 ~~~~~~~~~~~~~~~~~~--~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKi 580 (876)
T KOG1041|consen 504 APTEESLEDMITEKSSME--KA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKI 580 (876)
T ss_pred CcccchhHHHHHHHHhhh--cc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHH
Confidence 222233444333222211 12 357999999999999999999999999999999999999999998999999999999
Q ss_pred HhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCC--CCceEEEEeccCCCCcceeeeEEEeeccchhhhhh
Q 001954 678 NVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQD 755 (992)
Q Consensus 678 N~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~--~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~ 755 (992)
|+||||+|+.|.+.....+| ..+.||||||+||+||+++... .|||||||+|+|| ..++|.+.++.|.+++|+|++
T Consensus 581 N~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~ 658 (876)
T KOG1041|consen 581 NVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQD 658 (876)
T ss_pred hhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcc
Confidence 99999999988765444444 4568999999999999998765 5999999999999 899999999999999999999
Q ss_pred hhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEe
Q 001954 756 LYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQ 835 (992)
Q Consensus 756 l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~ 835 (992)
+ .+|++++|..|+++++.+|++|||||||||||||.+|+++|+.+||+||..+.++|.|+||||||+
T Consensus 659 ~-------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~q 725 (876)
T KOG1041|consen 659 L-------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQ 725 (876)
T ss_pred h-------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEE
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHh
Q 001954 836 KRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNL 915 (992)
Q Consensus 836 KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~L 915 (992)
||||||||+.+..+ +..++.+|+|||||||+.||||.++|||||||.++||||||+||||||||++|++|+||+|||.|
T Consensus 726 KrHhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~L 804 (876)
T KOG1041|consen 726 KRHHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYAL 804 (876)
T ss_pred cccceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999998762 34567899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCccccchhhhHHHHHHHhhhhcCccccCCCCCCCCCCCccccccccCCCCCCCcccccccccCCeeeC
Q 001954 916 CYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTDGSGHTSTKSTRAVGESGVRPLPALKENVKRVMFYC 992 (992)
Q Consensus 916 C~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 992 (992)
||+|+|||+|||||+|+||||++|+|||.|.+....+.+...++. +. . .........+..+|.++.++||||
T Consensus 805 c~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~--s~-~--~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 805 CFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQ--SI-V--DLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccc--cc-c--ccchhhhhhHHHhhhcccceEEeC
Confidence 999999999999999999999999999988221111211111111 10 1 111111245678999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-126 Score=1062.05 Aligned_cols=719 Identities=26% Similarity=0.424 Sum_probs=628.2
Q ss_pred CCCCCCCeEEEEeeEEEeec-CCCceeeEeEEEccCCCChHHHHHHHHHHHHHhcccccCCCcceeeCcceEEEecccCC
Q 001954 135 GYGQVGTKCIVKANHFFAEL-PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPF 213 (992)
Q Consensus 135 ~~Gt~G~~i~l~tN~f~i~~-~~~~iy~YdV~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~k~lys~~~Lp~ 213 (992)
+.|+.|.+++|.||||++.. |++.||||+|+|+|++.+++++++++ .+|.. .+ +...+|||. .||...+|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L----~~h~~-li-g~~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALL----YNHTD-LI-GKGYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHH----HHhHh-hh-ccceeecce-eehhhHHHhh
Confidence 78999999999999999987 89999999999999999887766554 34432 34 456799996 8999999876
Q ss_pred CceeEEEEeeccccCCCCCCcccEEEEEEEEeeeechhhHHHHhcCCCCCCchHHHHHHHHHHHhhh-cCCccccccccC
Q 001954 214 VWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS-TKRYCPIGRSFF 292 (992)
Q Consensus 214 ~~~~f~V~l~~~~~~~~~~~~~~~f~V~Ik~~~~i~l~~l~~~l~g~~~~~~~~~iq~LniIlr~~~-~~~~~~vGrsFF 292 (992)
...+ .+ . .++....++|+||+++++.. .+++.||++|+|+|... ..++.++||+||
T Consensus 160 ~~te-l~---~------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTE-LV---S------KSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhe-ee---c------ccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 4322 11 1 23556789999999998753 45789999999999986 578999999999
Q ss_pred CCCCCCCccC-CCCEEEEeeeeeeeeeccceeEeeeecccccccccccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcc
Q 001954 293 SPSIRTPQRL-GDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRG 371 (992)
Q Consensus 293 ~~~~~~~~~l-g~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkG 371 (992)
+|... .++ ...+++|+||-+|||..+..++|+.|++|++ .+..+++|+|..+.+. +++...++++.+-|
T Consensus 217 np~~~--i~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPRAK--IEIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCCcc--cccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 98643 333 5689999999999999999999999999998 7889999999998873 34578899999999
Q ss_pred eEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHHHHhCccccCCCCCceeeCCCC--------ccccc
Q 001954 372 VKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQK--------KANYL 443 (992)
Q Consensus 372 lkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~~~--------k~~yl 443 (992)
+.|.+.|+ +++|+|++|++..++..+|..+| | .||+.|||+++|||+|++-+||+|+...+. +..++
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d-g-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD-G-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC-c-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99998886 35799999999999999998544 4 579999999999999999999999986432 35799
Q ss_pred cccceeecCCcccccCCCHHHHH------HHHhhhcCCchhhHHHHHHHHHhccCCcc--ccccccceEEcccceEEEeE
Q 001954 444 PMEACKIVEGQRYTKRLNERQIT------ALLKVTCQRPRDRENDILQTVQQNAYDQD--LYAKEFGIKISEKLASVEAR 515 (992)
Q Consensus 444 P~Elc~I~~gQr~~~kL~~~q~~------~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~I~~~~~~v~aR 515 (992)
.||||.+. +|+|++++ +|.++|+..|.+|..++..++..+.-+.+ ..|+.|||+++.+.++|+||
T Consensus 362 IPELc~~T-------GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gR 434 (845)
T KOG1042|consen 362 IPELCFLT-------GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGR 434 (845)
T ss_pred ehhhhhcc-------CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccce
Confidence 99999974 89999876 57889999999999999988765433322 46799999999999999999
Q ss_pred EcCCCceeccCCCCccccCCCCcccc--cccceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCc
Q 001954 516 ILPAPWLKYHENGKEKDCLPQVGQWN--MMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPV 593 (992)
Q Consensus 516 vLp~P~I~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~ 593 (992)
+||+.+|.+++.. ....++..+|. .+..+++.+..+++|++++..++ ...++.|++.|.+.+..+||++..|-+
T Consensus 435 il~sEkI~~~~~~--~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~--~~~a~~fi~~l~r~a~~mgm~i~~P~~ 510 (845)
T KOG1042|consen 435 ILPSEKILFGNQK--VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRN--NSEAQEFINMLRRVASSMGMQIREPIC 510 (845)
T ss_pred ecCccceecCCcc--cCCCcchhhhhhhcccccccccCCCcceEEEecCcc--HHHHHHHHHHHHHhccccceecCCceE
Confidence 9999999998741 23344567894 67778899999999999999875 458899999999999999999999888
Q ss_pred ccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccccc--hhhHH
Q 001954 594 IPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKIS--KQYLA 671 (992)
Q Consensus 594 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~--~q~~~ 671 (992)
+.+..+++++|-+++++... ..+++|+||||+.+++.|+.||++++++..||||||..+|+.+.. .+.+.
T Consensus 511 v~i~ddr~~tYvraiqq~v~--------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAt 582 (845)
T KOG1042|consen 511 VEIKDDRPGTYVRAIQQVVG--------ADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIAT 582 (845)
T ss_pred EEeCCCChHHHHHHHHHhcc--------CCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHH
Confidence 88888889999888877643 579999999999999999999999999999999999999997543 56788
Q ss_pred HHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchh
Q 001954 672 NVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 751 (992)
Q Consensus 672 Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E 751 (992)
+|+|||||||||..|.++ ||+ +.+||||+||+|.+.. +..|++|+|||+|. .+++|++.+..|...+|
T Consensus 583 KI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VAs~n~-~~tr~fS~v~~~~~~qe 650 (845)
T KOG1042|consen 583 KIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVASMNN-DFTRWFSRVIEQENGQE 650 (845)
T ss_pred HHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEEEeecc-chhhhhhheecccCHHH
Confidence 999999999999999874 675 5699999999998653 45799999999995 89999999999999999
Q ss_pred hhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHHHHHH----HHHHHHHhhCCCCCC
Q 001954 752 LIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELD----AIRKACASLEPNYQP 827 (992)
Q Consensus 752 ~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~----~i~~A~~~~~~~y~P 827 (992)
+.+.| .-++..+|++|++.|..+|+||||||||||+||+.++.++||+ ++.+.+++++.+|+|
T Consensus 651 l~d~L-------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~ 717 (845)
T KOG1042|consen 651 LADNL-------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKP 717 (845)
T ss_pred HHHHH-------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCC
Confidence 99999 8999999999999999999999999999999999999999999 788888888878999
Q ss_pred CEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHH
Q 001954 828 PVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADG 907 (992)
Q Consensus 828 ~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~ 907 (992)
+++||||+||.++|||..... ...||+||||||+.||.|.++||||+||++.|||..||||.||||++++++|.
T Consensus 718 rl~~iVV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDk 791 (845)
T KOG1042|consen 718 RLAVIVVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDK 791 (845)
T ss_pred cEEEEEEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHH
Confidence 999999999999999987643 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCc
Q 001954 908 IQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEP 948 (992)
Q Consensus 908 Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~ 948 (992)
+|+|||.|||+|+||.++|++||||+|||++|+....-|+.
T Consensus 792 mQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 792 MQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred HHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988766654
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.1e-101 Score=897.95 Aligned_cols=420 Identities=54% Similarity=0.930 Sum_probs=371.2
Q ss_pred ccccccceEEcccceEEEeEEcCCCceeccCCCCccccCCCCcccccccceeecCceeceeEEEEeCCCcch----HHHH
Q 001954 496 LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQE----SVAR 571 (992)
Q Consensus 496 ~~l~~fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~----~~~~ 571 (992)
++|++|||+|+.+|++|+||+||||.|.|+++.+ ...+.+|+||+++++|+.++.+++|++|++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~--~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK--TVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc--ccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 4689999999999999999999999999986432 345678999999999999999999999999864222 4799
Q ss_pred HHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccC
Q 001954 572 GFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLG 651 (992)
Q Consensus 572 ~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~G 651 (992)
+|++.|.+.|+.+||++. ... ....+.++..++.+.+. ....++|||||||+++.++|+.||++||.+.|
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~---~~~~~~~~~~~~~~~~~-----~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAI---ASVEGRVEELFAKLKQA-----KGEGPQLVLVILPKKDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHHHhcCCccc--ccc---cccchhHHHHHHHHHhh-----ccCCCCEEEEEEcCCCcchHHHHHHHHhhcCC
Confidence 999999999999999987 221 11122222222222111 11368999999999888999999999999999
Q ss_pred ceeeeEeeccccc-cchhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCC-CCCCceEEEEe
Q 001954 652 IISQCCLTKHVFK-ISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGE-DSSPSIAAVVA 729 (992)
Q Consensus 652 I~TQci~~~~~~k-~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~-~~~pSiaavVa 729 (992)
|+||||..+++.| .++||+.||+||||+||||+||.++... .+++...+|||||+||+||++++ ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999999875 7899999999999999999999997532 22344678999999999999875 45799999999
Q ss_pred ccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCCCCceEEEEeCCCChhhHHHHHHH
Q 001954 730 SQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLY 809 (992)
Q Consensus 730 S~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~ 809 (992)
|+|. .+++|.+.++.|.+++|+|++| ++|++++|+.|++.+|.+|++|||||||||||||.+|+++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~ 291 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNE 291 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHH
Confidence 9996 7999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccc
Q 001954 810 ELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTS 889 (992)
Q Consensus 810 Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTa 889 (992)
|+++|++||.++.++|+|+||||||+||||+|||+.+..+. ..+.+||+||||||++||+|..+||||+||.++||||
T Consensus 292 E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTa 369 (426)
T cd04657 292 ELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTA 369 (426)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCCCCCCCeEEecccCCCCceeEEEeccccCccCC
Confidence 99999999999988899999999999999999999865431 1237999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhc
Q 001954 890 RPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM 946 (992)
Q Consensus 890 rPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l 946 (992)
|||||+||+||+++++|+||+|||+|||+|+|||++||||+|+||||++|+|||+||
T Consensus 370 rPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 370 RPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=7.1e-95 Score=848.92 Aligned_cols=439 Identities=31% Similarity=0.493 Sum_probs=393.3
Q ss_pred HHHHHHhhhcCCchhhHHHHHHHHHhccCCcc--ccccccceEEcccceEEEeEEcCCCceeccCCCCccccCCCCcccc
Q 001954 464 QITALLKVTCQRPRDRENDILQTVQQNAYDQD--LYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWN 541 (992)
Q Consensus 464 q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~fGi~I~~~~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wn 541 (992)
.+.+|+++++.+|.+|++.|.++++...++.+ ++|++|||+|++++++|+||+|+||.|.|+++. ...+..|+|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 36789999999999999999999988776665 589999999999999999999999999998752 2234578886
Q ss_pred c--ccceeecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccc
Q 001954 542 M--MNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKT 619 (992)
Q Consensus 542 l--~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 619 (992)
+ .+.+|+.+..+++|++|++.. +.+.++.|++.|.+.++.+||.+..|.++.+...+.+++.+.|++...
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~~--~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPSR--DQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEecC--CHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 466789999999999999874 567899999999999999999998766665555555666666655442
Q ss_pred cCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeecccccc--chhhHHHHHHHHHhhcCCcccccccccccCCC
Q 001954 620 KGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKMGGRNTVLLDAISCRIP 697 (992)
Q Consensus 620 ~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p 697 (992)
.+++|+|||+|++..++|+.||++|+.+.||+||||..+++.+. ..+++.||+||||+||||+||.+... +
T Consensus 151 --~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~-----~ 223 (448)
T cd04658 151 --SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP-----P 223 (448)
T ss_pred --CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----C
Confidence 47899999999988889999999999999999999999998763 56899999999999999999998642 1
Q ss_pred cccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhh-hhhhhccccCCCcCcchhHHHHHH
Q 001954 698 LVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLYKTWHDPVRGTVSGGMIRDL 776 (992)
Q Consensus 698 ~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~d~~~~~~~~~~i~~~ 776 (992)
....+|||||+||+||+++ ..||++|+|||+|. ..++|++.++.|..++|+ +++| ++|++++
T Consensus 224 -~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~ 286 (448)
T cd04658 224 -FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL-------------GKSMKKA 286 (448)
T ss_pred -CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH-------------HHHHHHH
Confidence 2347899999999999874 46999999999995 899999999999999998 8888 9999999
Q ss_pred HHHHHHHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCC
Q 001954 777 LISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRS 856 (992)
Q Consensus 777 L~~f~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~ 856 (992)
|+.|++.+|.+|++|||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. ..
T Consensus 287 l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~ 360 (448)
T cd04658 287 LKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NF 360 (448)
T ss_pred HHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CC
Confidence 999999999999999999999999999999999999999999998888999999999999999999997643 45
Q ss_pred CCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHH
Q 001954 857 GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAH 936 (992)
Q Consensus 857 ~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~ 936 (992)
+||+||||||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|+|||++||+|+|+||||
T Consensus 361 ~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~ 440 (448)
T cd04658 361 SNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAH 440 (448)
T ss_pred CCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 001954 937 LAAFRAR 943 (992)
Q Consensus 937 l~a~Rar 943 (992)
++|+|+.
T Consensus 441 ~~a~~~g 447 (448)
T cd04658 441 KLAFLVG 447 (448)
T ss_pred HHHHHhc
Confidence 9999874
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.3e-87 Score=773.85 Aligned_cols=384 Identities=32% Similarity=0.497 Sum_probs=338.6
Q ss_pred ceEEEeEEcCCCceeccCCCCccccCCCCcccccccceeecCcee-ceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcc
Q 001954 509 LASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTV-SRWACINFSRSVQESVARGFCNELAQMCQVSGME 587 (992)
Q Consensus 509 ~~~v~aRvLp~P~I~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~ 587 (992)
+++|+||+||+|.|.|+++ |++.+++|..++.+ +.|++|++.+ ...++|++.|.+.++++||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999651 99999999999999 9999999865 23568999999999999999
Q ss_pred cCC-CCcccccCC--ChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHHHhhhccCceeeeEeeccccc
Q 001954 588 FNP-EPVIPIHNA--RPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFK 664 (992)
Q Consensus 588 i~~-~p~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k 664 (992)
+.. ++...+... +.+++.+.+++..+ .+++|||||+|+++.++|+.||++|+.+ ||+||||..+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~ 136 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIK--------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKK 136 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhh--------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhcc
Confidence 987 443322222 23445555544332 3799999999998889999999999888 99999999999875
Q ss_pred --cchhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCC-CCCCCceEEEEeccCCCCcceeee
Q 001954 665 --ISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENG-EDSSPSIAAVVASQDWPEVTKYAG 741 (992)
Q Consensus 665 --~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~-~~~~pSiaavVaS~D~~~~~~y~~ 741 (992)
..++++.||+||||+||||+||.|... .+...+|||||+||+||+++ ....||++|+|+|+|. . +.|.+
T Consensus 137 ~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~ 208 (393)
T cd02826 137 MRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGG 208 (393)
T ss_pred ccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccce
Confidence 678999999999999999999999652 12346899999999999875 3357999999999995 3 44455
Q ss_pred EEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcCC-CCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHh
Q 001954 742 LVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACAS 820 (992)
Q Consensus 742 ~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~-~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~ 820 (992)
..+.|..++|++++| ++|++++|..|+++++. +|++|||||||||||||++|+++|+++|++||.
T Consensus 209 ~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~- 274 (393)
T cd02826 209 FLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE- 274 (393)
T ss_pred EEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 677888889999988 99999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCccccccceeEEEEecC
Q 001954 821 LEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDE 900 (992)
Q Consensus 821 ~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de 900 (992)
+..+|+|+||||+|+||||+|||+.+.++ ..+||+||||||++||+|..+||||+||.++|||+||+||+||+||
T Consensus 275 ~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~ 349 (393)
T cd02826 275 IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFND 349 (393)
T ss_pred hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECC
Confidence 77789999999999999999999976532 3489999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhh
Q 001954 901 NNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARF 944 (992)
Q Consensus 901 ~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~ 944 (992)
+++++|+||+|||+|||+|+|||++||+|+|+||||++|+|||.
T Consensus 350 ~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 350 KNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.5e-72 Score=627.82 Aligned_cols=299 Identities=47% Similarity=0.745 Sum_probs=268.0
Q ss_pred EEEEEecCCCCchhhhHHHHhhhccCceeeeEeecccccc--chhhHHHHHHHHHhhcCCcccccccccccCCCcccCCC
Q 001954 626 LLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIP 703 (992)
Q Consensus 626 lv~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~ 703 (992)
+||||||+++.+.|..||++++.++||+||||..+++.+. ..+++.||++|||+||||.|+.+.+. +...++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5889999988889999999999999999999999999876 56999999999999999997443321 111111 67
Q ss_pred eEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHH
Q 001954 704 TIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKA 783 (992)
Q Consensus 704 tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~ 783 (992)
+||||+||+|++++....||++|+|+|+|. ..++|.+.+..|..++|++++| +++++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 999999999998876567999999999994 8999999999999999999998 99999999999999
Q ss_pred cCC-CCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcce
Q 001954 784 TGQ-KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPG 862 (992)
Q Consensus 784 ~g~-~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pG 862 (992)
++. +|++|||||||||||||.+|+++|+++|++||.++.++|+|+|+||+|+||||+|||+.+..+ ...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCC
Confidence 997 999999999999999999999999999999999999999999999999999999999987642 57899999
Q ss_pred eeecCccccCCcceEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHh
Q 001954 863 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRA 942 (992)
Q Consensus 863 TVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Ra 942 (992)
||||+.||+|..+||||+||.++|||+||+||+|||||++++.|+||+|||+|||+|+||++++|+|+|+||||++|+|+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~ 297 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRG 297 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHH
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 001954 943 RFYME 947 (992)
Q Consensus 943 r~~l~ 947 (992)
+.++.
T Consensus 298 ~~~~~ 302 (302)
T PF02171_consen 298 RNNLK 302 (302)
T ss_dssp HHHC-
T ss_pred HhhcC
Confidence 98863
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=8.7e-47 Score=437.36 Aligned_cols=285 Identities=21% Similarity=0.237 Sum_probs=230.2
Q ss_pred hHHHHHHHHHHHhhcccccCCCceEEEEEecCCC------CchhhhHHHHhhhccCceeeeEeecccccc--chhhHHHH
Q 001954 602 DQVEKALKHVYHSSMSKTKGKELELLLAILPDNN------GSLYGDLKRICETDLGIISQCCLTKHVFKI--SKQYLANV 673 (992)
Q Consensus 602 ~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~------~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni 673 (992)
+.+..+++....+. ..+++++||++|++. .++|..||+++ .+.||+||||..+++.+. ..+++.||
T Consensus 94 ~~~~~a~~~~~~~~-----~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~ni 167 (404)
T cd04659 94 EAIIEAVDLALSES-----SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNL 167 (404)
T ss_pred HHHHHHHHHHHHhh-----cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHH
Confidence 34444555444432 246899999999875 68999999987 689999999999998753 67899999
Q ss_pred HHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhhh
Q 001954 674 SLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELI 753 (992)
Q Consensus 674 ~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i 753 (992)
++|||+|+||+||.|.+. ...+|||||+||+|+..+....+++|+|+.+ |. ..+ ...+...++.+
T Consensus 168 al~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~g---~g~---~~~~~~~~~~~ 232 (404)
T cd04659 168 ALALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-DG---LGL---ILRGAPIEEPT 232 (404)
T ss_pred HHHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-CC---CEE---EEecCccCCcc
Confidence 999999999999999642 1357999999999997653223455544332 31 111 11222223322
Q ss_pred -----hhhhccccCCCcCcchhHHHHHHHHHHHHHcCC-CCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001954 754 -----QDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQ-KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQP 827 (992)
Q Consensus 754 -----~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g~-~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P 827 (992)
+++ .++++++|+.|++.++. +|+||||||||+. .++|+++|++||.++. |
T Consensus 233 ~~~~~~~~-------------~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~ 288 (404)
T cd04659 233 EDRSPADL-------------KDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----I 288 (404)
T ss_pred cccCHHHH-------------HHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----c
Confidence 344 89999999999999888 9999999999994 6899999999999874 8
Q ss_pred CEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeecCccccCCcceEEEeecCCc--------cccccceeEEEEec
Q 001954 828 PVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI--------QGTSRPAHYHVLWD 899 (992)
Q Consensus 828 ~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~--------qGTarPthY~VL~d 899 (992)
+++||+|+||||+|||+.+..+ ...||++|||||.+ .+||||++|.+. +||++|+| |++|
T Consensus 289 ~i~~I~V~k~~~~R~f~~~~~~-----~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~ 356 (404)
T cd04659 289 KVDLVEVIKSGPHRLFRFGTYP-----NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRH 356 (404)
T ss_pred eEEEEEEEecCCcceEEecCCC-----CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEc
Confidence 9999999999999999976432 12899999999954 499999999886 99999999 8889
Q ss_pred CCCCCHHHHHHHHHHhhhhccccCC-CccccchhhhHHHHHHHhh
Q 001954 900 ENNFTADGIQSLTNNLCYTYARCTR-SVSVVPPAYYAHLAAFRAR 943 (992)
Q Consensus 900 e~~~~~d~Lq~lTy~LC~~y~r~t~-sVsiPaP~yYA~l~a~Rar 943 (992)
+.+++.|+|+++||.|||+|+|++. ++++|+|+||||++|+...
T Consensus 357 ~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 357 SGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred cCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 9999999999999999999999988 9999999999999998754
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=7.6e-23 Score=201.20 Aligned_cols=133 Identities=32% Similarity=0.582 Sum_probs=109.4
Q ss_pred ccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHH
Q 001954 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (992)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~ 417 (992)
++|+|++.++.+.... .....+.++.+.|+|++|.++|+++ .+.|+|.+|+++.+++.+|+.+ .|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999999885421 1123445599999999999999865 3779999999999999999855 467789999999
Q ss_pred HHhCccccCCCCCceeeCCCCc--cccccccceeecCCcccccCCCHHHHHHHHhhhcCC
Q 001954 418 EMYGFTIQHTHLPCLQVGNQKK--ANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475 (992)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~~k--~~ylP~Elc~I~~gQr~~~kL~~~q~~~mik~a~~~ 475 (992)
++||++|+||+||||+++...+ ++|||||||.|+++|++.+++.+.+++.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999999864
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.82 E-value=5.4e-20 Score=175.58 Aligned_cols=113 Identities=51% Similarity=0.903 Sum_probs=97.9
Q ss_pred ccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHH
Q 001954 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (992)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~ 417 (992)
++|+|+++++++.... ..+.+.++.++.++|+|++|.++|.++..|.|+|.||++.++.+.+|+.+++++.+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTP-LGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCcccc-cccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 6899999999986432 245567888999999999999999864467799999999999899998654435689999999
Q ss_pred HHhCccccCCCCCceeeCCCCccccccccceeec
Q 001954 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIV 451 (992)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~~k~~ylP~Elc~I~ 451 (992)
++||++|+||+||||++|++.+++|+|||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999999888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.81 E-value=8.5e-20 Score=174.10 Aligned_cols=112 Identities=30% Similarity=0.425 Sum_probs=96.9
Q ss_pred cccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHH
Q 001954 337 PLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYF 416 (992)
Q Consensus 337 ~~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF 416 (992)
.++|+|+++++++.++..+.+.+.++.++.++|+|++|.++|++. ++.|+|.+|++.++++. |.. .+|+.+||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~-~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPL-NRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCC-ceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 368999999999865544566777889999999999999999853 57799999999999888 763 346678999999
Q ss_pred HHHhCccccCCCCCceeeCCC---Cccccccccceeec
Q 001954 417 QEMYGFTIQHTHLPCLQVGNQ---KKANYLPMEACKIV 451 (992)
Q Consensus 417 ~~~Y~i~L~~p~lPll~~g~~---~k~~ylP~Elc~I~ 451 (992)
+++||++|+||+||||++|.+ .+.+|||||||.|.
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999873
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.70 E-value=2.8e-17 Score=156.39 Aligned_cols=105 Identities=22% Similarity=0.350 Sum_probs=88.9
Q ss_pred ccHHHHHHHHhcCCccCCCCChhHHHHHHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHH
Q 001954 338 LPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417 (992)
Q Consensus 338 ~~lld~i~~~~~~~~~~r~l~~~~~~~l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~ 417 (992)
.+++|++.++++... ...+++++++.|+|+.|.++|+ ++.|+|.+|+++.++.++|+.. ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478999999887531 1257889999999999999994 4679999999999999999844 344569999999
Q ss_pred HHhCccccCCCCCceeeCCCC--------ccccccccceeec
Q 001954 418 EMYGFTIQHTHLPCLQVGNQK--------KANYLPMEACKIV 451 (992)
Q Consensus 418 ~~Y~i~L~~p~lPll~~g~~~--------k~~ylP~Elc~I~ 451 (992)
++||+.|+||+||||+++.++ +++|||||||.++
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 999999999999999998643 4799999999986
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.53 E-value=3.9e-15 Score=119.95 Aligned_cols=52 Identities=56% Similarity=1.004 Sum_probs=42.2
Q ss_pred cccccccCCCCCCCCccCCCCEEEEeeeeeeeeeccceeEeeeeccccccccc
Q 001954 285 CPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEP 337 (992)
Q Consensus 285 ~~vGrsFF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~gl~LNIDvs~~aF~~~ 337 (992)
+.+||+||+++.+. .+|++|+|+|+|||+||||++++|+||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 36899999876543 78999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.39 E-value=3.3e-13 Score=131.29 Aligned_cols=83 Identities=28% Similarity=0.486 Sum_probs=69.8
Q ss_pred HHHHhcceEEEEeecCCccceEEEecccCCCCCCeeeecCCCCcceeHHHHHHHHhCccccCCCCCceeeCC--------
Q 001954 365 IKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN-------- 436 (992)
Q Consensus 365 l~~~LkGlkV~~~~~~~~~r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~-------- 436 (992)
..+.|+|+.|.++|+ ++.|+|.+|+ +.+++++|+.+++++.+|++|||+++|||+|+||+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999996 5679999999 9999999986654355799999999999999999999999751
Q ss_pred ------------CC---ccccccccceeec
Q 001954 437 ------------QK---KANYLPMEACKIV 451 (992)
Q Consensus 437 ------------~~---k~~ylP~Elc~I~ 451 (992)
+. -.++||||||.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred ccccccccccccccccceEEEeChHHhccc
Confidence 01 1468999999875
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-09 Score=124.35 Aligned_cols=299 Identities=19% Similarity=0.200 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHHhcC-ccc--CCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceEEEEEecCCCCchhhhHHH
Q 001954 568 SVARGFCNELAQMCQVSG-MEF--NPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKR 644 (992)
Q Consensus 568 ~~~~~f~~~L~~~~~~~G-m~i--~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~vilp~~~~~~Y~~IK~ 644 (992)
..+..+.+.|....+..| +.. .. +-+.....++..- ..|..+.+++ ....++..-+-++...|+.+|+
T Consensus 356 ~rlk~~~kkv~~~fkn~n~i~~k~eg-~~l~~a~~r~~~k-ddl~~iIkei-------d~ee~~k~e~ykdd~~YailKr 426 (685)
T COG1431 356 TRLKSTIKKVVYGFKNSNGIDWKVEG-LTLHVAGKRPKMK-DDLTKIIKEI-------DVEELKKQEMYKDDVKYAILKR 426 (685)
T ss_pred hHHHHHHHHHHHHHHhccchhhhccc-ceeeecccchhhh-ccchhhhhhh-------hhhhhccccccccchHHHHHHh
Confidence 457788888888888776 332 22 2222222222111 1222233221 0112233334455678999998
Q ss_pred HhhhccCceeeeEeeccccccchhhHHHHHHHHHhhcCCcccccccccccCCCcccCCCeEEEEEeecCCCCCCCCCCce
Q 001954 645 ICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSI 724 (992)
Q Consensus 645 ~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSi 724 (992)
.+.-|++|.+.-.+.+|.-..++.|+++|+-+|-+|+++.+-+.. ..-+-|+|+||+.-.-+ ...+
T Consensus 427 ---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~--------gpvDaivGlDvsr~~~g---n~tV 492 (685)
T COG1431 427 ---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGL--------GPVDAIVGLDVSRVSEG---NWTV 492 (685)
T ss_pred ---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccC--------CCccceeeeeeeEEeeC---CeEE
Confidence 344599999999888877788999999999999999999875421 12268999999986543 2344
Q ss_pred EEEEeccCC-CCcceeeeEEEeec-cchhhhhhhhccccCCCcCcchhHHHHHHHHHHHHHcC-CCCceEEEEeCCCChh
Q 001954 725 AAVVASQDW-PEVTKYAGLVCAQA-HRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATG-QKPLRIIFYRDGVSEG 801 (992)
Q Consensus 725 aavVaS~D~-~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~~~g-~~P~~IIiyRDGVSEg 801 (992)
-|++...|. ....+|+-....-. .+-|.+.+. +.. .. ..+ ..=++|++.|||-
T Consensus 493 ~gct~~f~seg~l~eyy~t~tpa~GErl~~~g~y----------------le~--~~---~~gfe~~n~iV~lRDG~--- 548 (685)
T COG1431 493 EGCTSCFVSEGGLEEYYHTVTPALGERLETSGRY----------------LEK--MN---WRGFESRNLIVTLRDGK--- 548 (685)
T ss_pred eeeeEEEeccCceEEeeecccCCccchhhhHHHH----------------HHH--HH---hhhhhccCeeEEEecCc---
Confidence 443332232 12333332111100 011111111 100 00 122 3447799999994
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCcceeeec------CccccCCcc
Q 001954 802 QFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVD------SKICHPTEF 875 (992)
Q Consensus 802 q~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD------~~It~p~~~ 875 (992)
+...|++++++-=.++ .-.++++.+-| .+-+||..+... + |-.+- +.++.|.
T Consensus 549 ----l~~~E~aavkeyg~el----gsn~ev~~i~k-nNp~vf~~e~~i-------~----g~f~~~~~s~~h~~~~~y-- 606 (685)
T COG1431 549 ----LVAGEIAAVKEYGGEL----GSNPEVNRILK-NNPWVFAIEGEI-------W----GAFVRLDGSTVHLCCSPY-- 606 (685)
T ss_pred ----cchHHHHHHHHHhhhc----CCChhhheecc-cCCeEEEeccee-------e----eEEEecCCcccccccCCC--
Confidence 5567887777655544 34556666655 566699876431 1 33332 3333332
Q ss_pred eEEEeecCCccccccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCC--ccccchhhhHHHHHHHhhh
Q 001954 876 DFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRS--VSVVPPAYYAHLAAFRARF 944 (992)
Q Consensus 876 dFyL~Sh~~~qGTarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~s--VsiPaP~yYA~l~a~Rar~ 944 (992)
.....||-+|.. +.+.-+.-..++-.|.|.|+-+.+..... .+||||++|||++.+.++.
T Consensus 607 ------npv~~gT~~pi~---~r~~~g~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 607 ------NPVRRGTPRPIA---LRRRDGKLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred ------CceecCCCcccc---cccccCccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 245568999877 33333333444445999999998888777 9999999999999988884
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.40 E-value=4.3e-07 Score=85.62 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=57.6
Q ss_pred HHHhcceEEEEeecCCcc-ceEEEecccCCCCCCeeeecCCCCcceeHHHHHHHHhCccccCCCCCceeeCC
Q 001954 366 KKALRGVKVEVTHRGTVR-RKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGN 436 (992)
Q Consensus 366 ~~~LkGlkV~~~~~~~~~-r~~rI~gi~~~~a~~~~F~~~~~g~~iSV~eYF~~~Y~i~L~~p~lPll~~g~ 436 (992)
.+.+.|..|.+.|++... +.|+|.+|.++.++.++|+.+ + .+|++|||+++|||.|++++||||.++.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 467889999999975222 569999999999999999733 2 4699999999999999999999999963
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=89.85 E-value=0.66 Score=45.83 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=47.9
Q ss_pred cccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhcCc
Q 001954 888 TSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEP 948 (992)
Q Consensus 888 TarPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l~~ 948 (992)
.....=.+|+.-...-.+++|..|||.||+.+.-+...+.+|.|+++|.++ +.|+-.
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 455566778876666789999999999999999999999999999999885 667665
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=82.67 E-value=5.6 Score=40.07 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=54.0
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+... +-.+|+ .+|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR-~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYR-RFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-E-EEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEECCccChhhCc-eEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 467899999999753 3468888887664 2222233 2344421 122554 5667777666
Q ss_pred HHH----cCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec--cccc
Q 001954 781 RKA----TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKR--HHTR 841 (992)
Q Consensus 781 ~~~----~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Kr--hhtR 841 (992)
++. ...+|+-||| || +.||+. +.++++++++- . +.+|-..|+ |.|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl--~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGL--N--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCC--C--eEEEEEEeccccccc
Confidence 542 2368998887 77 567764 55677877643 2 556655554 5555
No 19
>PRK11617 endonuclease V; Provisional
Probab=78.19 E-value=32 Score=36.83 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHhhhhc
Q 001954 901 NNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYM 946 (992)
Q Consensus 901 ~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~Rar~~l 946 (992)
..++.|+--.++-.+|- --++|.|+..||++|.+.+...
T Consensus 179 h~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 179 HRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 46788988888888773 2379999999999998887543
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=75.26 E-value=19 Score=44.15 Aligned_cols=109 Identities=23% Similarity=0.246 Sum_probs=64.4
Q ss_pred eEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHHH
Q 001954 704 TIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRK 782 (992)
Q Consensus 704 tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~~ 782 (992)
.-|-++|+||-+. .-.|+++|.-.|. |.-..|.- ..+... +-.+|+ .+|+|.|...++
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dDy--------------a~m~Evl~RR~~ 440 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFEDGKPLKASYRR-YNINSI--TGGDDY--------------AAMREVLRRRYS 440 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeCCccChhhCCe-eecCCC--CCCCHH--------------HHHHHHHHHHHh
Confidence 6788999999753 3478888887774 22222322 223211 113454 466666655544
Q ss_pred H--c--C-CCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee--cccccccccC
Q 001954 783 A--T--G-QKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQK--RHHTRLFANN 846 (992)
Q Consensus 783 ~--~--g-~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~K--rhhtRff~~~ 846 (992)
. . . .+|+-||| || +.||+.. ..+++++++- ...|.+|-..| ||.+++|..+
T Consensus 441 r~~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~--~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 441 SIQKKNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLGV--VNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred hhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--CCCCcEEEEEecCCCceEEEeCC
Confidence 3 1 1 48987777 77 5678754 4456666632 11366777777 7777887654
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=70.31 E-value=33 Score=42.52 Aligned_cols=108 Identities=24% Similarity=0.377 Sum_probs=65.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|..|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+.... .-++|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR-~f~ik~~~-~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYR-LFNLRAHD-TRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEECCccChhhCC-eeeccCCC-CCCchH--------------HHHHHHHHHH
Confidence 478999999999753 3478888887774 2222232 23332210 113554 5667777666
Q ss_pred HHHc---CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001954 781 RKAT---GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 781 ~~~~---g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
++.. +.+|+-||| || +.||+. +.++++.+++- .|.+|-..||.-.-|+|
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 5442 258988777 76 567775 44566666642 47788889966444444
No 22
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=59.78 E-value=62 Score=39.69 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|..|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+... +-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEYR-RYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 357889999999653 3478888887774 2222232 2333321 113554 5667777665
Q ss_pred HHHc----CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001954 781 RKAT----GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 781 ~~~~----g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
++.. +.+|+-||| || +.||+.. ..+++.+++- .|.+|-..|+. .++|.
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLSV--------GIEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 5442 248988777 77 5677754 4466666642 46688888865 44553
No 23
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=59.46 E-value=72 Score=38.72 Aligned_cols=106 Identities=21% Similarity=0.338 Sum_probs=63.1
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHH
Q 001954 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~ 781 (992)
|.-|-|+|+||-+. .-.|+++|.-.|. |.-..|. ...+... +-.+|+ .+|.|.|...+
T Consensus 366 p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR-~f~Ik~~--~~~dDy--------------~~m~Evl~RR~ 424 (519)
T PRK12306 366 PNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYR-RFKIKTV--EGIDDF--------------ASIAEVVRRRY 424 (519)
T ss_pred CCeEEEEECCccCC----CCceEEEEEEeCCccChhhcC-eeecCCC--CCCCHH--------------HHHHHHHHHHH
Confidence 56789999999653 3478888887774 2222232 2333321 113454 46666665554
Q ss_pred HHc----CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001954 782 KAT----GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFAN 845 (992)
Q Consensus 782 ~~~----g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~ 845 (992)
+.. +.+|+-||| || +-||+.. ..+++.+++- .|.+|-..|+. .++|..
T Consensus 425 ~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg~----~i~viglaK~~-e~i~~p 476 (519)
T PRK12306 425 SRLLEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLGL----KIPLISIAKRE-EEIYVP 476 (519)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEcCc-eEEEeC
Confidence 431 248987777 77 5677754 4466666642 47788888976 445543
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=58.94 E-value=81 Score=38.74 Aligned_cols=110 Identities=21% Similarity=0.304 Sum_probs=63.8
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+.......++|+ .+|+|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYR-VYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 357899999999753 3378888887774 2212222 233322100013454 5666776655
Q ss_pred HHH--c--CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001954 781 RKA--T--GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 781 ~~~--~--g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
++. . +.+|+-||| || +.||+.. ..+++.+++ ....|.+|-..|+.-+ +|-
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg--~~~~i~v~gLaK~~e~-i~~ 471 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLNA--------AYSILKGLK--IENKVKVCALAKKEET-IFL 471 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCceEEEEecCCeE-EEe
Confidence 543 1 258988777 77 5677754 446666663 2223778888886633 443
No 25
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=56.20 E-value=79 Score=39.29 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- ..+... +-.+|+ .+|+|.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYRK-FKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccChhhCCe-eecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 357889999999753 3478888887774 22223332 333321 113454 5667777665
Q ss_pred HHHc----CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001954 781 RKAT----GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFAN 845 (992)
Q Consensus 781 ~~~~----g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~~ 845 (992)
+... +.+|+-||| || +.||+.. ..+++.+++- .|.+|-..||. .++|..
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQVNS--------AWKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 5431 258988877 77 5677754 4566666642 47788888844 555543
No 26
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=51.14 E-value=1e+02 Score=38.11 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=59.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|.- ..+... +-.+|+ .+|+|.|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dDy--------------a~m~Evl~RR 440 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYRR-YNIKGV--TGGDDY--------------AAMREVLTRR 440 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 357889999999653 3478888887774 22222322 333321 113454 5666766555
Q ss_pred HHH----cCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001954 781 RKA----TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKR 837 (992)
Q Consensus 781 ~~~----~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Kr 837 (992)
++. .+.+|+-||| || +.||+.. ..+++++++- .|.+|-..|+
T Consensus 441 ~~~~~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg~----~i~v~glaK~ 486 (598)
T PRK00558 441 YSRLLKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELGL----DIPVVGLAKG 486 (598)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCCC----CCcEEEEEec
Confidence 543 2358988877 77 5678754 4466666642 3667777773
No 27
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=49.91 E-value=1.2e+02 Score=37.80 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+.. .+-.+|+ .+|+|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYR-KFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 357899999999653 3478888887774 2212222 222321 1113454 4666666555
Q ss_pred HHH---cC-CCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001954 781 RKA---TG-QKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 781 ~~~---~g-~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
++. .+ .+|+-||| || +.||+.. ..+++.+++- . .|.+|-..|+.. ++|.
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl--~-~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIGI--T-DQPLASIAKREE-IIYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--C-CCcEEEEecCCe-EEEC
Confidence 543 12 48987777 77 5677754 4566666642 1 267888888764 4554
No 28
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=48.53 E-value=1.2e+02 Score=37.87 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f 780 (992)
.|..|-++|+||-+. .-.++++|.-.|. |.-..|.- +.+... + .+|+ .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR~-f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYRT-YAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEECCccChhhCCe-eeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 457889999999753 3467888877774 22222322 223221 1 2454 5667777665
Q ss_pred HHHcCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001954 781 RKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQK 836 (992)
Q Consensus 781 ~~~~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~K 836 (992)
++....+|+-||| || +.||+.. ..+++.+++- ...|.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAA--------VVRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCC--CCCccEEEEec
Confidence 5443358987776 76 5677754 4566666643 22367787777
No 29
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=40.72 E-value=1.3e+02 Score=31.89 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=30.2
Q ss_pred ccceeEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHH
Q 001954 889 SRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAF 940 (992)
Q Consensus 889 arPthY~VL~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~l~a~ 940 (992)
.+|.-..+ -+.++.|+--+++-.+|- .-++|.|+..||+++.
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~~-------~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCCK-------GYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCcHHHHHHHHhc
Confidence 45544332 346788888888877763 3679999999999875
No 30
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=37.40 E-value=2e+02 Score=35.59 Aligned_cols=98 Identities=27% Similarity=0.299 Sum_probs=58.9
Q ss_pred CeEEEEEeecCCCCCCCCCCceEEEEeccCC-CCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHHHHHH
Q 001954 703 PTIIFGADVTHPENGEDSSPSIAAVVASQDW-PEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFR 781 (992)
Q Consensus 703 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L~~f~ 781 (992)
|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. ...+.. + .+|+ .+|.|.|...+
T Consensus 375 p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR-~f~i~~-~---~dD~--------------~~m~Evl~RR~ 431 (577)
T PRK14668 375 PERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYR-RKKLTE-R---NDDY--------------ANMRELVRWRA 431 (577)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEECCccCHHHcC-eecCCC-C---CChH--------------HHHHHHHHHHH
Confidence 56889999999653 3478888887774 2222232 233332 1 3554 45566655544
Q ss_pred HHc------CCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecc
Q 001954 782 KAT------GQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRH 838 (992)
Q Consensus 782 ~~~------g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Krh 838 (992)
++. +.+|+-||| || +-||+. +..+++.+++- .|.+|-..|+.
T Consensus 432 ~r~~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg~----~i~v~glaK~~ 479 (577)
T PRK14668 432 ERAVEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETGW----DVPAIALAKAE 479 (577)
T ss_pred HhhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCC
Confidence 331 258987777 76 567775 44566666642 46788888855
No 31
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=25.53 E-value=72 Score=23.31 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCceEEE
Q 001954 775 DLLISFRKATGQKPLRIIF 793 (992)
Q Consensus 775 ~~L~~f~~~~g~~P~~IIi 793 (992)
..+..|...+|++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 5678899999999998743
No 32
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=24.29 E-value=4.7e+02 Score=32.35 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=58.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCceEEEEeccCCCCcceeeeEEEeeccchhhhhhhhccccCCCcCcchhHHHHHHH-HHH
Q 001954 702 IPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLL-ISF 780 (992)
Q Consensus 702 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~D~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~d~~~~~~~~~~i~~~L-~~f 780 (992)
.|.-|-++|++|... .-.|+++|-..|..-..+.+-...+.. +-.+|. .+|+|.| +.|
T Consensus 378 ~p~rIE~~D~Sh~~g----~~~V~smvvf~~g~~~k~~YRry~i~~---~~~dDy--------------a~m~evl~RR~ 436 (581)
T COG0322 378 APYRIECFDISHIQG----EDTVGSMVVFEDGGPSKKDYRRYNIKI---TGGDDY--------------ASMREVLTRRY 436 (581)
T ss_pred CceeEEEeecCcccc----ccceeEEEEEcCCCCChhhcccccccC---CCCchH--------------HHHHHHHHHHh
Confidence 467888999999763 236777777666411111111111111 113443 3445554 444
Q ss_pred HHH-cCCCCceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001954 781 RKA-TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRLFA 844 (992)
Q Consensus 781 ~~~-~g~~P~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~KrhhtRff~ 844 (992)
.+. ...+|+-|+| || +-||+.. .++++++++-+ .. +|-+.|+--+-|++
T Consensus 437 ~~~~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l~~~--~~--viglaK~~~~~~~~ 486 (581)
T COG0322 437 SRLLKEELPDLILI--DG-GKGQLNA--------AKEVLKELGLD--IP--VIGLAKGEEELLLP 486 (581)
T ss_pred hhccccCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC--cc--EEEEEecCceeEec
Confidence 443 2389966665 66 5677754 45666666322 22 88888987754444
No 33
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=21.09 E-value=4.6e+02 Score=27.15 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=42.2
Q ss_pred cCcchhHHHHHHHHHHHHH---cCCCC--ceEEEEeCCCChhhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001954 765 RGTVSGGMIRDLLISFRKA---TGQKP--LRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKR 837 (992)
Q Consensus 765 ~~~~~~~~i~~~L~~f~~~---~g~~P--~~IIiyRDGVSEgq~~~vl~~Ev~~i~~A~~~~~~~y~P~it~Ivv~Kr 837 (992)
..+.+...+..++..|... +...| ..|||+=||...+.- .+ ...|.+|.+++.....-.|.||.|...
T Consensus 80 G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~~----~~~i~~a~~~l~~~~~i~i~~v~vG~~ 152 (199)
T cd01457 80 GGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-AV----ERVIIKASDELDADNELAISFLQIGRD 152 (199)
T ss_pred CcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-HH----HHHHHHHHHhhccccCceEEEEEeCCc
Confidence 3455577777777777653 12344 889999999875321 11 245677777665443456777777553
No 34
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.85 E-value=3.4e+02 Score=25.88 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=36.0
Q ss_pred CCCceEEEEEecCCC-CchhhhHHHHhhhccCceeeeEeeccccccchhhHHHHHHHHHhh
Q 001954 621 GKELELLLAILPDNN-GSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVK 680 (992)
Q Consensus 621 ~~~~~lv~vilp~~~-~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~K 680 (992)
+..|.|+++.+.++. +..|.+.|.-.+.++||.+..+.... ....+-+...+.++|.-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 356888888876543 45799988888889999998886521 12345566777777743
No 35
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=1.4e+02 Score=31.36 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=55.1
Q ss_pred eecCceeceeEEEEeCCCcchHHHHHHHHHHHHHHHhcCcccCCCCcccccCCChhHHHHHHHHHHHhhcccccCCCceE
Q 001954 547 MINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELEL 626 (992)
Q Consensus 547 f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 626 (992)
+++.+....-+++++..++.-. --..|+-.+++.|+.+. .++++ .+.+++-..--+.. ..|.-+.+
T Consensus 69 il~~ad~~dVa~LVVGdPfgAT----THsDlvlRAk~~~ipv~-----vIHNA---SimNavG~CGLqlY--~fGetVSi 134 (272)
T KOG3123|consen 69 ILDEADKEDVAFLVVGDPFGAT----THSDLVLRAKELGIPVE-----VIHNA---SIMNAVGCCGLQLY--NFGETVSI 134 (272)
T ss_pred HhhhhhhcceEEEEecCccccc----chhhhheehhhcCCCeE-----EEech---HHHhhhccceeeee--ccCcEEEE
Confidence 4455555666777766543211 11334556778887653 13332 23333321111111 11345666
Q ss_pred EEEEecCCCCchhhhHHHHhhhccCceeeeEee
Q 001954 627 LLAILPDNNGSLYGDLKRICETDLGIISQCCLT 659 (992)
Q Consensus 627 v~vilp~~~~~~Y~~IK~~~~~~~GI~TQci~~ 659 (992)
+|+--..+....|+.||+ ..+.|++|-|++.
T Consensus 135 v~ftd~wrP~SfydkI~~--Nr~~glHTLcLLD 165 (272)
T KOG3123|consen 135 VFFTDNWRPESFYDKIKE--NRQLGLHTLCLLD 165 (272)
T ss_pred EEEccCcCchhHHHHHHH--hhhcCceeEEEEE
Confidence 666655666778999996 6899999999975
Done!