Query 001955
Match_columns 991
No_of_seqs 593 out of 4414
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 13:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-86 8.2E-91 783.9 42.7 621 11-656 6-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.5E-66 5.3E-71 652.5 53.2 727 120-940 133-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-43 3.8E-48 382.9 14.9 278 169-453 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.1E-26 2.4E-31 294.6 22.2 439 520-985 69-536 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.2E-27 1.3E-31 296.9 19.6 389 537-954 180-582 (968)
6 PLN03210 Resistant to P. syrin 99.9 3E-22 6.5E-27 253.5 27.5 328 536-916 579-910 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 232.6 -3.7 303 571-940 74-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 6.5E-23 1.4E-27 219.1 -5.2 335 520-930 55-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.3E-21 5E-26 206.5 2.9 264 547-833 80-351 (873)
10 KOG4194 Membrane glycoprotein 99.8 3.7E-21 8.1E-26 204.9 2.7 364 518-932 76-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 9E-22 1.9E-26 200.8 -8.5 225 536-804 82-306 (565)
12 KOG0618 Serine/threonine phosp 99.8 1E-20 2.2E-25 212.8 -3.3 375 545-950 45-459 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 1.5E-20 3.3E-25 191.9 -10.9 328 568-941 199-544 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.8E-22 188.2 -7.2 353 571-944 41-427 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 2.3E-14 5E-19 168.1 13.6 260 575-939 201-461 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 7.9E-15 1.7E-19 176.0 5.3 230 573-839 543-786 (889)
17 PRK04841 transcriptional regul 99.4 1.2E-11 2.6E-16 156.8 26.4 293 164-504 14-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.4 3.8E-13 8.2E-18 159.2 10.7 91 576-677 179-269 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 154.3 13.2 240 576-917 223-463 (788)
20 PRK00411 cdc6 cell division co 99.4 1.6E-10 3.5E-15 131.1 29.0 317 162-495 28-376 (394)
21 KOG4237 Extracellular matrix p 99.4 4.8E-14 1E-18 144.9 -2.6 349 567-934 83-475 (498)
22 KOG0617 Ras suppressor protein 99.3 1.8E-14 3.9E-19 130.6 -5.8 147 541-696 29-176 (264)
23 KOG0617 Ras suppressor protein 99.3 3.5E-14 7.6E-19 128.8 -4.2 108 572-681 30-138 (264)
24 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 147.0 11.9 94 575-679 199-292 (754)
25 TIGR02928 orc1/cdc6 family rep 99.2 2.3E-09 5E-14 120.3 27.2 304 162-480 13-351 (365)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.4E-14 117.2 21.6 183 190-377 42-242 (269)
27 KOG4237 Extracellular matrix p 99.2 8.9E-13 1.9E-17 135.7 -4.8 107 576-683 68-177 (498)
28 PRK00080 ruvB Holliday junctio 99.2 4.5E-10 9.7E-15 123.1 15.1 263 164-480 25-311 (328)
29 PF01637 Arch_ATPase: Archaeal 99.1 3.6E-10 7.7E-15 118.5 13.0 193 166-372 1-233 (234)
30 TIGR00635 ruvB Holliday juncti 99.1 2.2E-09 4.7E-14 117.1 18.3 275 165-480 5-290 (305)
31 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.7E-13 116.5 19.7 291 174-506 25-340 (894)
32 cd00116 LRR_RI Leucine-rich re 99.0 3.3E-11 7.2E-16 132.9 -2.5 88 569-656 17-118 (319)
33 PF05729 NACHT: NACHT domain 99.0 4E-09 8.7E-14 103.8 11.9 144 192-340 1-163 (166)
34 PTZ00112 origin recognition co 98.9 5.3E-08 1.1E-12 112.1 21.0 302 163-480 754-1087(1164)
35 cd00116 LRR_RI Leucine-rich re 98.9 4.2E-11 9.2E-16 132.1 -4.6 81 579-659 2-94 (319)
36 COG3899 Predicted ATPase [Gene 98.8 1.2E-07 2.5E-12 115.5 18.9 316 165-505 1-387 (849)
37 COG2256 MGS1 ATPase related to 98.8 3.2E-08 7E-13 103.8 11.8 178 158-370 24-209 (436)
38 PRK06893 DNA replication initi 98.7 1E-07 2.2E-12 98.3 13.1 156 191-377 39-207 (229)
39 PF13401 AAA_22: AAA domain; P 98.6 1.1E-07 2.4E-12 89.2 9.2 118 190-309 3-125 (131)
40 KOG0532 Leucine-rich repeat (L 98.6 1.5E-09 3.2E-14 117.4 -4.3 55 750-805 212-270 (722)
41 PRK13342 recombination factor 98.6 1.3E-06 2.9E-11 98.7 18.2 177 165-375 13-198 (413)
42 COG3903 Predicted ATPase [Gene 98.6 3E-07 6.5E-12 97.5 11.4 293 190-505 13-315 (414)
43 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.1E-06 2.3E-11 91.4 14.5 171 169-376 22-204 (226)
44 PF14580 LRR_9: Leucine-rich r 98.5 7.8E-08 1.7E-12 92.8 5.0 129 542-681 16-151 (175)
45 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 109.5 5.4 107 572-681 113-220 (394)
46 KOG4341 F-box protein containi 98.5 1.4E-09 3E-14 113.6 -8.2 81 576-656 139-226 (483)
47 PF13191 AAA_16: AAA ATPase do 98.5 2.1E-07 4.5E-12 93.4 7.5 48 165-215 1-48 (185)
48 PF13173 AAA_14: AAA domain 98.5 5.5E-07 1.2E-11 83.7 9.5 119 192-332 3-127 (128)
49 KOG0532 Leucine-rich repeat (L 98.5 6.6E-09 1.4E-13 112.5 -4.2 170 573-804 73-243 (722)
50 PLN03150 hypothetical protein; 98.5 2E-07 4.4E-12 110.7 7.6 105 576-680 419-525 (623)
51 PRK14961 DNA polymerase III su 98.5 6.2E-06 1.4E-10 91.5 18.9 191 164-370 16-217 (363)
52 PRK05564 DNA polymerase III su 98.5 4.2E-06 9E-11 91.2 17.2 178 165-372 5-189 (313)
53 PRK04195 replication factor C 98.5 1.2E-05 2.5E-10 93.0 21.6 247 164-452 14-271 (482)
54 PRK12402 replication factor C 98.4 4.5E-06 9.8E-11 92.6 16.9 198 164-372 15-225 (337)
55 COG1474 CDC6 Cdc6-related prot 98.4 1.1E-05 2.4E-10 88.3 19.2 207 163-375 16-240 (366)
56 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4.2E-11 82.7 12.0 124 167-310 1-130 (151)
57 PRK14963 DNA polymerase III su 98.4 1.1E-06 2.5E-11 100.3 11.7 194 165-370 15-214 (504)
58 PTZ00202 tuzin; Provisional 98.4 9.9E-06 2.2E-10 87.0 17.6 168 160-339 258-433 (550)
59 PF05496 RuvB_N: Holliday junc 98.4 3.8E-06 8.2E-11 82.8 13.5 179 164-375 24-223 (233)
60 PF14580 LRR_9: Leucine-rich r 98.4 8.3E-08 1.8E-12 92.7 1.8 105 572-681 16-124 (175)
61 KOG2028 ATPase related to the 98.4 3E-06 6.5E-11 87.2 12.6 179 159-368 139-331 (554)
62 PRK07003 DNA polymerase III su 98.4 1.3E-05 2.8E-10 92.8 19.1 196 164-375 16-223 (830)
63 PRK14960 DNA polymerase III su 98.4 9E-06 2E-10 93.0 17.7 192 164-371 15-217 (702)
64 PRK14949 DNA polymerase III su 98.4 1.1E-05 2.4E-10 95.2 17.5 194 164-373 16-221 (944)
65 PLN03025 replication factor C 98.3 8.8E-06 1.9E-10 88.8 15.7 182 164-370 13-197 (319)
66 TIGR02903 spore_lon_C ATP-depe 98.3 9.2E-06 2E-10 95.7 16.3 202 164-376 154-398 (615)
67 PLN03150 hypothetical protein; 98.3 1.1E-06 2.5E-11 104.4 8.7 109 547-661 420-530 (623)
68 PRK08727 hypothetical protein; 98.3 1.6E-05 3.5E-10 82.2 15.9 149 192-371 42-202 (233)
69 PRK06645 DNA polymerase III su 98.3 1.7E-05 3.8E-10 90.2 17.4 193 165-370 22-226 (507)
70 PRK14957 DNA polymerase III su 98.3 1.8E-05 3.9E-10 90.6 17.6 185 164-375 16-223 (546)
71 PRK14956 DNA polymerase III su 98.3 9.4E-06 2E-10 90.3 14.6 194 164-369 18-218 (484)
72 PRK00440 rfc replication facto 98.3 2.2E-05 4.7E-10 86.5 17.4 182 164-372 17-202 (319)
73 PRK12323 DNA polymerase III su 98.3 1.9E-05 4.1E-10 90.2 16.8 199 164-373 16-225 (700)
74 KOG3207 Beta-tubulin folding c 98.3 3.3E-07 7.2E-12 96.7 2.7 136 540-680 141-281 (505)
75 cd01128 rho_factor Transcripti 98.3 1.3E-06 2.9E-11 90.0 6.6 90 190-280 15-113 (249)
76 PRK13341 recombination factor 98.2 8.9E-06 1.9E-10 96.7 13.6 170 165-367 29-211 (725)
77 KOG2227 Pre-initiation complex 98.2 2E-05 4.3E-10 84.7 14.6 215 161-377 147-376 (529)
78 COG4886 Leucine-rich repeat (L 98.2 9.2E-07 2E-11 100.5 4.9 128 540-677 111-239 (394)
79 TIGR02397 dnaX_nterm DNA polym 98.2 5.8E-05 1.3E-09 84.4 19.2 183 164-374 14-219 (355)
80 PRK14962 DNA polymerase III su 98.2 3E-05 6.4E-10 88.1 16.3 183 164-376 14-222 (472)
81 PRK05896 DNA polymerase III su 98.2 3.1E-05 6.8E-10 88.7 16.3 196 164-375 16-223 (605)
82 TIGR01242 26Sp45 26S proteasom 98.2 1.6E-05 3.5E-10 88.5 13.8 180 163-367 121-328 (364)
83 PRK07940 DNA polymerase III su 98.2 3.7E-05 7.9E-10 85.2 16.4 192 165-373 6-213 (394)
84 PRK14964 DNA polymerase III su 98.2 4.9E-05 1.1E-09 85.8 17.6 177 164-370 13-214 (491)
85 PRK09087 hypothetical protein; 98.2 2.9E-05 6.4E-10 79.5 14.5 143 191-375 44-197 (226)
86 PRK08903 DnaA regulatory inact 98.2 3.2E-05 7E-10 80.1 15.1 153 190-377 41-203 (227)
87 PRK08084 DNA replication initi 98.2 5.5E-05 1.2E-09 78.4 16.7 156 191-377 45-213 (235)
88 PRK07471 DNA polymerase III su 98.2 6.2E-05 1.3E-09 82.7 17.9 197 164-374 19-239 (365)
89 PRK07994 DNA polymerase III su 98.2 3E-05 6.5E-10 90.2 16.0 194 164-373 16-220 (647)
90 PRK14955 DNA polymerase III su 98.2 3.9E-05 8.3E-10 86.2 16.5 198 164-370 16-225 (397)
91 PRK09376 rho transcription ter 98.2 3.1E-06 6.7E-11 90.7 7.0 90 190-280 168-266 (416)
92 PRK14951 DNA polymerase III su 98.2 4.9E-05 1.1E-09 88.3 17.1 196 164-372 16-224 (618)
93 PRK08691 DNA polymerase III su 98.2 1.9E-05 4E-10 91.4 13.5 193 164-372 16-219 (709)
94 KOG1259 Nischarin, modulator o 98.2 4.5E-07 9.8E-12 90.6 0.4 103 573-680 305-409 (490)
95 TIGR00678 holB DNA polymerase 98.2 8.6E-05 1.9E-09 74.4 16.8 90 269-368 95-186 (188)
96 PRK09112 DNA polymerase III su 98.1 0.00011 2.5E-09 80.2 18.7 197 163-374 22-241 (351)
97 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.1E-11 67.5 4.1 57 575-632 1-59 (61)
98 PRK14958 DNA polymerase III su 98.1 5.9E-05 1.3E-09 86.7 17.1 192 164-371 16-218 (509)
99 PF00308 Bac_DnaA: Bacterial d 98.1 5.3E-05 1.1E-09 77.4 15.0 164 190-375 33-210 (219)
100 KOG2120 SCF ubiquitin ligase, 98.1 6.9E-08 1.5E-12 96.4 -6.0 179 575-833 185-373 (419)
101 KOG3207 Beta-tubulin folding c 98.1 1.1E-06 2.5E-11 92.8 2.7 61 572-632 118-182 (505)
102 PRK05642 DNA replication initi 98.1 6E-05 1.3E-09 78.0 15.2 156 191-377 45-212 (234)
103 PRK15386 type III secretion pr 98.1 1.4E-05 3E-10 86.8 9.5 169 745-968 48-225 (426)
104 KOG1259 Nischarin, modulator o 98.1 7.4E-07 1.6E-11 89.1 -0.3 107 572-683 281-387 (490)
105 PRK09111 DNA polymerase III su 98.1 0.00011 2.3E-09 85.8 17.3 197 164-373 24-233 (598)
106 PF05621 TniB: Bacterial TniB 98.1 0.00018 4E-09 74.7 17.0 197 171-371 44-259 (302)
107 PRK14950 DNA polymerase III su 98.0 0.0001 2.2E-09 87.1 17.0 196 164-374 16-222 (585)
108 PRK14969 DNA polymerase III su 98.0 0.0001 2.2E-09 85.4 16.7 195 164-374 16-222 (527)
109 PRK14087 dnaA chromosomal repl 98.0 0.00017 3.6E-09 82.0 18.0 171 191-377 141-323 (450)
110 PRK14959 DNA polymerase III su 98.0 0.00016 3.4E-09 83.5 17.6 198 164-377 16-225 (624)
111 PF13855 LRR_8: Leucine rich r 98.0 5.5E-06 1.2E-10 65.4 4.0 59 874-934 1-60 (61)
112 PRK14970 DNA polymerase III su 98.0 0.00027 5.8E-09 79.2 18.5 178 164-370 17-206 (367)
113 PRK14954 DNA polymerase III su 98.0 0.00018 3.9E-09 84.0 17.5 201 164-373 16-229 (620)
114 CHL00181 cbbX CbbX; Provisiona 98.0 0.00029 6.3E-09 75.0 17.7 136 192-343 60-212 (287)
115 PRK14952 DNA polymerase III su 98.0 0.00019 4.1E-09 83.2 17.2 198 164-377 13-224 (584)
116 KOG4341 F-box protein containi 98.0 4.7E-07 1E-11 95.1 -3.6 88 546-637 139-231 (483)
117 PRK07133 DNA polymerase III su 98.0 0.00031 6.8E-09 82.4 18.5 193 164-374 18-221 (725)
118 KOG0989 Replication factor C, 97.9 0.00011 2.4E-09 74.9 12.2 184 164-368 36-225 (346)
119 TIGR02881 spore_V_K stage V sp 97.9 0.00021 4.5E-09 75.6 15.2 162 165-342 7-193 (261)
120 PRK03992 proteasome-activating 97.9 8.4E-05 1.8E-09 83.1 12.7 179 163-367 130-337 (389)
121 PRK14953 DNA polymerase III su 97.9 0.00059 1.3E-08 78.1 19.6 182 165-373 17-220 (486)
122 KOG2543 Origin recognition com 97.9 0.00058 1.3E-08 71.8 17.5 167 163-338 5-191 (438)
123 TIGR00767 rho transcription te 97.9 3.2E-05 7E-10 83.5 8.6 91 190-281 167-266 (415)
124 TIGR02880 cbbX_cfxQ probable R 97.9 0.00048 1E-08 73.4 17.2 134 193-342 60-210 (284)
125 PRK07764 DNA polymerase III su 97.9 0.00036 7.9E-09 84.3 18.0 190 165-370 16-218 (824)
126 PF14516 AAA_35: AAA-like doma 97.9 0.0017 3.6E-08 71.1 21.5 201 163-380 10-246 (331)
127 PRK11331 5-methylcytosine-spec 97.9 5.2E-05 1.1E-09 83.4 9.6 120 164-295 175-298 (459)
128 COG2255 RuvB Holliday junction 97.9 0.00028 6.1E-09 71.2 13.4 174 164-370 26-220 (332)
129 PRK08451 DNA polymerase III su 97.8 0.00067 1.5E-08 77.5 18.4 194 164-373 14-218 (535)
130 PRK06305 DNA polymerase III su 97.8 0.00077 1.7E-08 76.6 18.8 183 164-374 17-224 (451)
131 KOG0531 Protein phosphatase 1, 97.8 4.9E-06 1.1E-10 94.6 1.1 105 571-680 91-196 (414)
132 PRK14948 DNA polymerase III su 97.8 0.00067 1.5E-08 79.9 18.7 196 164-373 16-222 (620)
133 PRK06620 hypothetical protein; 97.8 0.00036 7.9E-09 70.8 14.2 138 192-373 45-189 (214)
134 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 56.9 3.5 39 576-615 2-40 (44)
135 PHA02544 44 clamp loader, smal 97.8 0.00024 5.3E-09 77.9 13.7 148 164-338 21-171 (316)
136 PF05673 DUF815: Protein of un 97.8 0.00068 1.5E-08 68.2 15.3 121 162-309 25-149 (249)
137 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00022 4.7E-09 87.4 14.1 156 164-340 187-363 (852)
138 TIGR00362 DnaA chromosomal rep 97.8 0.00072 1.6E-08 76.7 17.4 159 191-371 136-308 (405)
139 PRK14971 DNA polymerase III su 97.8 0.00091 2E-08 78.8 18.4 176 164-370 17-219 (614)
140 PRK15386 type III secretion pr 97.7 0.00012 2.5E-09 79.8 9.4 74 571-655 48-121 (426)
141 PRK14088 dnaA chromosomal repl 97.7 0.0012 2.7E-08 74.9 18.0 159 191-370 130-302 (440)
142 PRK06647 DNA polymerase III su 97.7 0.0014 3E-08 76.4 18.4 193 164-372 16-219 (563)
143 PRK14965 DNA polymerase III su 97.7 0.00082 1.8E-08 79.0 16.7 196 164-375 16-223 (576)
144 PF00004 AAA: ATPase family as 97.7 0.00013 2.8E-09 68.4 8.1 96 194-309 1-111 (132)
145 PRK12422 chromosomal replicati 97.7 0.00083 1.8E-08 76.0 15.5 154 191-366 141-306 (445)
146 PRK00149 dnaA chromosomal repl 97.6 0.0011 2.4E-08 76.2 16.3 159 191-371 148-320 (450)
147 TIGR02639 ClpA ATP-dependent C 97.6 0.00063 1.4E-08 82.8 14.6 156 164-340 182-358 (731)
148 PRK05563 DNA polymerase III su 97.6 0.0025 5.4E-08 74.6 18.8 192 164-371 16-218 (559)
149 COG0593 DnaA ATPase involved i 97.6 0.0022 4.8E-08 70.1 16.7 165 190-373 112-290 (408)
150 PTZ00361 26 proteosome regulat 97.6 0.00058 1.3E-08 76.4 12.5 159 165-343 184-370 (438)
151 KOG3665 ZYG-1-like serine/thre 97.6 4.6E-05 1E-09 90.3 4.0 108 542-657 145-261 (699)
152 PRK07399 DNA polymerase III su 97.6 0.0031 6.7E-08 68.0 17.6 195 165-373 5-221 (314)
153 PRK05707 DNA polymerase III su 97.6 0.0023 5.1E-08 69.3 16.6 97 269-373 105-203 (328)
154 CHL00095 clpC Clp protease ATP 97.6 0.00067 1.5E-08 83.6 13.9 156 164-339 179-353 (821)
155 PRK14086 dnaA chromosomal repl 97.5 0.0016 3.4E-08 75.1 15.5 157 192-370 315-485 (617)
156 smart00382 AAA ATPases associa 97.5 0.00061 1.3E-08 64.6 10.3 88 192-283 3-91 (148)
157 TIGR03689 pup_AAA proteasome A 97.5 0.0015 3.1E-08 74.4 14.5 168 164-341 182-379 (512)
158 PRK08116 hypothetical protein; 97.5 0.00035 7.6E-09 73.6 9.0 103 192-309 115-220 (268)
159 COG3267 ExeA Type II secretory 97.5 0.0059 1.3E-07 61.2 16.8 179 190-375 50-247 (269)
160 PF12799 LRR_4: Leucine Rich r 97.5 0.00013 2.8E-09 52.6 3.7 39 598-638 1-39 (44)
161 TIGR00763 lon ATP-dependent pr 97.5 0.0052 1.1E-07 75.4 19.7 165 164-340 320-505 (775)
162 KOG1909 Ran GTPase-activating 97.5 1.2E-05 2.6E-10 82.9 -2.6 249 568-834 23-309 (382)
163 PTZ00454 26S protease regulato 97.5 0.0019 4.2E-08 71.9 14.4 179 164-367 145-351 (398)
164 PRK11034 clpA ATP-dependent Cl 97.4 0.0017 3.8E-08 78.0 14.9 156 164-340 186-362 (758)
165 TIGR00602 rad24 checkpoint pro 97.4 0.0011 2.4E-08 77.4 12.8 51 163-214 83-133 (637)
166 KOG2982 Uncharacterized conser 97.4 8E-05 1.7E-09 75.1 2.1 84 569-656 65-156 (418)
167 PRK10536 hypothetical protein; 97.4 0.0011 2.4E-08 67.6 10.1 130 165-309 56-212 (262)
168 TIGR03346 chaperone_ClpB ATP-d 97.3 0.002 4.4E-08 79.7 14.2 44 165-214 174-217 (852)
169 KOG0531 Protein phosphatase 1, 97.3 6.1E-05 1.3E-09 85.7 0.1 107 572-683 69-175 (414)
170 PRK08769 DNA polymerase III su 97.3 0.0087 1.9E-07 64.3 16.3 96 269-374 112-209 (319)
171 KOG2120 SCF ubiquitin ligase, 97.3 1.1E-05 2.4E-10 81.0 -5.2 91 743-837 228-327 (419)
172 CHL00176 ftsH cell division pr 97.3 0.0035 7.7E-08 73.9 14.2 177 164-365 183-386 (638)
173 COG1373 Predicted ATPase (AAA+ 97.2 0.004 8.7E-08 69.7 13.9 149 193-374 39-193 (398)
174 PRK10865 protein disaggregatio 97.2 0.0031 6.7E-08 77.8 14.1 45 164-214 178-222 (857)
175 KOG3665 ZYG-1-like serine/thre 97.2 0.00014 3.1E-09 86.3 2.2 131 545-683 122-263 (699)
176 PF13177 DNA_pol3_delta2: DNA 97.2 0.007 1.5E-07 58.6 13.5 120 168-311 1-143 (162)
177 PRK08058 DNA polymerase III su 97.2 0.0092 2E-07 65.2 15.9 161 166-338 7-180 (329)
178 COG1222 RPT1 ATP-dependent 26S 97.2 0.0083 1.8E-07 63.0 14.4 186 166-377 153-371 (406)
179 PRK08181 transposase; Validate 97.2 0.0012 2.5E-08 69.2 8.2 100 193-310 108-209 (269)
180 PRK12377 putative replication 97.2 0.00085 1.8E-08 69.3 6.9 102 191-309 101-205 (248)
181 PRK06871 DNA polymerase III su 97.2 0.004 8.7E-08 67.0 12.2 177 173-370 11-200 (325)
182 KOG1514 Origin recognition com 97.1 0.016 3.4E-07 66.2 17.0 207 163-376 395-624 (767)
183 PRK10787 DNA-binding ATP-depen 97.1 0.0024 5.3E-08 77.4 11.6 166 163-340 321-506 (784)
184 COG0542 clpA ATP-binding subun 97.1 0.0021 4.6E-08 75.5 10.3 123 164-297 491-620 (786)
185 PRK10865 protein disaggregatio 97.1 0.0093 2E-07 73.6 16.2 138 164-309 568-720 (857)
186 TIGR02639 ClpA ATP-dependent C 97.1 0.0078 1.7E-07 73.5 15.2 121 164-297 454-580 (731)
187 PRK08939 primosomal protein Dn 97.1 0.0023 4.9E-08 68.7 9.4 122 168-309 135-260 (306)
188 TIGR02640 gas_vesic_GvpN gas v 97.1 0.018 4E-07 60.7 16.1 107 193-309 23-160 (262)
189 PRK08118 topology modulation p 97.0 0.00028 6.1E-09 68.6 2.0 34 193-226 3-37 (167)
190 PRK06090 DNA polymerase III su 97.0 0.029 6.3E-07 60.3 17.2 175 173-373 12-201 (319)
191 TIGR01241 FtsH_fam ATP-depende 97.0 0.0073 1.6E-07 70.3 13.8 179 164-367 55-260 (495)
192 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0025 5.5E-08 78.2 10.3 136 164-309 566-718 (852)
193 PRK06921 hypothetical protein; 97.0 0.0023 5.1E-08 67.3 8.7 99 191-309 117-224 (266)
194 PF04665 Pox_A32: Poxvirus A32 97.0 0.001 2.2E-08 67.5 5.7 36 192-229 14-49 (241)
195 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0035 7.6E-08 77.6 11.5 136 164-309 565-717 (852)
196 PRK06526 transposase; Provisio 97.0 0.0013 2.7E-08 68.6 6.4 100 192-310 99-201 (254)
197 PRK07952 DNA replication prote 97.0 0.0035 7.5E-08 64.6 9.5 103 191-309 99-204 (244)
198 KOG2982 Uncharacterized conser 97.0 0.00023 5E-09 71.8 0.8 177 768-956 93-289 (418)
199 PRK13531 regulatory ATPase Rav 97.0 0.0028 6E-08 70.7 9.1 154 165-339 21-193 (498)
200 PF01695 IstB_IS21: IstB-like 96.9 0.0011 2.5E-08 65.0 5.4 100 191-309 47-149 (178)
201 COG2607 Predicted ATPase (AAA+ 96.9 0.014 3E-07 57.8 12.5 120 164-310 60-183 (287)
202 KOG4579 Leucine-rich repeat (L 96.9 0.00021 4.6E-09 63.7 -0.0 72 568-641 70-141 (177)
203 KOG1969 DNA replication checkp 96.9 0.0036 7.8E-08 71.4 9.3 90 188-295 323-412 (877)
204 PRK05541 adenylylsulfate kinas 96.9 0.0041 9E-08 61.4 8.8 37 190-228 6-42 (176)
205 COG0470 HolB ATPase involved i 96.9 0.0081 1.7E-07 66.2 11.9 126 165-310 2-149 (325)
206 PRK04296 thymidine kinase; Pro 96.9 0.0034 7.4E-08 62.6 8.0 112 192-310 3-116 (190)
207 PF02562 PhoH: PhoH-like prote 96.8 0.0017 3.7E-08 64.4 5.5 131 168-310 4-156 (205)
208 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0009 1.9E-08 71.9 3.6 50 165-214 52-101 (361)
209 COG1223 Predicted ATPase (AAA+ 96.8 0.025 5.4E-07 56.5 13.1 178 163-366 120-318 (368)
210 KOG4579 Leucine-rich repeat (L 96.8 0.00031 6.7E-09 62.7 -0.0 84 571-656 49-133 (177)
211 TIGR01243 CDC48 AAA family ATP 96.8 0.0091 2E-07 73.1 12.5 180 164-368 178-382 (733)
212 CHL00095 clpC Clp protease ATP 96.8 0.0062 1.3E-07 75.3 11.0 136 164-309 509-661 (821)
213 KOG1909 Ran GTPase-activating 96.8 0.00056 1.2E-08 71.0 1.6 139 539-680 86-251 (382)
214 KOG0744 AAA+-type ATPase [Post 96.8 0.032 6.9E-07 57.7 13.9 81 190-280 176-260 (423)
215 PRK09183 transposase/IS protei 96.7 0.0035 7.7E-08 65.8 7.4 100 192-309 103-205 (259)
216 PF00910 RNA_helicase: RNA hel 96.7 0.0029 6.3E-08 56.4 5.7 21 194-214 1-21 (107)
217 PRK07993 DNA polymerase III su 96.7 0.077 1.7E-06 57.8 17.8 177 173-371 11-202 (334)
218 PRK07261 topology modulation p 96.7 0.0034 7.4E-08 61.4 6.7 66 193-281 2-68 (171)
219 PF00158 Sigma54_activat: Sigm 96.7 0.0051 1.1E-07 59.7 7.7 130 166-309 1-143 (168)
220 PRK06964 DNA polymerase III su 96.7 0.053 1.2E-06 58.9 16.2 93 269-373 131-225 (342)
221 PF07693 KAP_NTPase: KAP famil 96.7 0.097 2.1E-06 57.6 18.8 42 170-214 2-43 (325)
222 PHA02244 ATPase-like protein 96.7 0.0092 2E-07 64.3 9.9 99 193-309 121-230 (383)
223 PF10443 RNA12: RNA12 protein; 96.6 0.31 6.6E-06 53.6 21.2 203 169-384 1-289 (431)
224 PF07728 AAA_5: AAA domain (dy 96.6 0.0013 2.8E-08 62.1 2.9 90 194-296 2-91 (139)
225 PRK08699 DNA polymerase III su 96.6 0.0047 1E-07 66.9 7.5 71 269-339 112-184 (325)
226 PRK04132 replication factor C 96.6 0.052 1.1E-06 65.7 16.6 155 199-373 574-731 (846)
227 KOG0741 AAA+-type ATPase [Post 96.6 0.071 1.5E-06 58.8 15.8 148 189-363 536-704 (744)
228 PRK12608 transcription termina 96.6 0.008 1.7E-07 65.0 8.6 102 172-279 119-229 (380)
229 PF14532 Sigma54_activ_2: Sigm 96.5 0.0024 5.2E-08 60.1 4.2 107 167-309 1-109 (138)
230 TIGR02237 recomb_radB DNA repa 96.5 0.0072 1.6E-07 61.7 7.9 48 190-240 11-58 (209)
231 KOG1859 Leucine-rich repeat pr 96.5 9.4E-05 2E-09 83.3 -6.5 79 573-656 185-264 (1096)
232 KOG2739 Leucine-rich acidic nu 96.5 0.00095 2.1E-08 67.0 1.1 108 571-682 39-155 (260)
233 PRK06835 DNA replication prote 96.5 0.0053 1.1E-07 66.4 6.8 102 192-309 184-288 (329)
234 KOG2228 Origin recognition com 96.5 0.025 5.4E-07 58.9 11.2 172 164-340 24-219 (408)
235 PRK11034 clpA ATP-dependent Cl 96.5 0.014 3E-07 70.4 10.9 121 164-297 458-584 (758)
236 KOG2004 Mitochondrial ATP-depe 96.5 0.02 4.3E-07 65.4 11.2 107 163-281 410-516 (906)
237 TIGR01243 CDC48 AAA family ATP 96.5 0.041 8.9E-07 67.5 15.1 179 164-367 453-657 (733)
238 COG2812 DnaX DNA polymerase II 96.5 0.013 2.8E-07 66.4 9.8 187 165-367 17-214 (515)
239 PF13671 AAA_33: AAA domain; P 96.4 0.013 2.7E-07 55.6 8.5 21 193-213 1-21 (143)
240 PF13207 AAA_17: AAA domain; P 96.4 0.0021 4.6E-08 59.0 3.0 21 193-213 1-21 (121)
241 CHL00195 ycf46 Ycf46; Provisio 96.4 0.037 7.9E-07 63.3 13.3 179 165-367 229-429 (489)
242 KOG0991 Replication factor C, 96.4 0.022 4.8E-07 55.9 9.6 44 164-213 27-70 (333)
243 PRK09361 radB DNA repair and r 96.4 0.013 2.8E-07 60.6 8.9 46 190-238 22-67 (225)
244 TIGR02902 spore_lonB ATP-depen 96.4 0.016 3.5E-07 67.6 10.6 43 165-213 66-108 (531)
245 cd03247 ABCC_cytochrome_bd The 96.4 0.032 7E-07 55.1 11.3 117 192-314 29-161 (178)
246 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.042 9E-07 52.1 11.5 105 192-315 27-132 (144)
247 COG1484 DnaC DNA replication p 96.4 0.005 1.1E-07 64.3 5.6 80 191-287 105-184 (254)
248 KOG1644 U2-associated snRNP A' 96.4 0.0045 9.7E-08 59.5 4.7 58 771-833 41-98 (233)
249 PF07724 AAA_2: AAA domain (Cd 96.4 0.0053 1.1E-07 59.8 5.3 90 190-297 2-106 (171)
250 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.01 2.2E-07 61.9 7.7 50 190-239 18-71 (235)
251 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.023 4.9E-07 54.1 9.2 117 192-311 3-139 (159)
252 cd01393 recA_like RecA is a b 96.3 0.021 4.5E-07 59.1 9.8 88 190-280 18-124 (226)
253 cd01120 RecA-like_NTPases RecA 96.3 0.027 5.8E-07 54.8 10.2 40 193-234 1-40 (165)
254 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.06 1.3E-06 55.1 12.5 124 192-315 31-204 (254)
255 cd03214 ABC_Iron-Siderophores_ 96.3 0.043 9.2E-07 54.4 11.4 122 191-315 25-163 (180)
256 PF13604 AAA_30: AAA domain; P 96.3 0.0099 2.1E-07 59.6 6.9 106 191-308 18-129 (196)
257 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.8E-07 61.0 7.7 87 191-279 69-172 (274)
258 cd03228 ABCC_MRP_Like The MRP 96.2 0.043 9.3E-07 53.8 11.1 118 191-315 28-160 (171)
259 KOG2123 Uncharacterized conser 96.2 0.00034 7.3E-09 70.0 -3.8 100 574-677 18-124 (388)
260 PRK11889 flhF flagellar biosyn 96.2 0.072 1.6E-06 58.0 13.2 113 190-305 240-357 (436)
261 PF05659 RPW8: Arabidopsis bro 96.2 0.097 2.1E-06 49.1 12.5 84 2-85 3-86 (147)
262 KOG1859 Leucine-rich repeat pr 96.2 0.0004 8.7E-09 78.4 -3.8 107 539-657 181-290 (1096)
263 cd03216 ABC_Carb_Monos_I This 96.2 0.026 5.6E-07 54.8 9.1 117 192-315 27-147 (163)
264 cd03223 ABCD_peroxisomal_ALDP 96.1 0.064 1.4E-06 52.3 11.8 117 191-314 27-152 (166)
265 cd03238 ABC_UvrA The excision 96.1 0.035 7.5E-07 54.4 9.7 114 191-314 21-153 (176)
266 PHA00729 NTP-binding motif con 96.1 0.014 3E-07 58.7 6.9 24 190-213 16-39 (226)
267 KOG1051 Chaperone HSP104 and r 96.1 0.043 9.3E-07 65.9 12.0 123 164-297 562-687 (898)
268 PRK13695 putative NTPase; Prov 96.1 0.0056 1.2E-07 60.4 4.1 22 193-214 2-23 (174)
269 COG1126 GlnQ ABC-type polar am 96.1 0.072 1.6E-06 52.3 11.1 124 191-317 28-203 (240)
270 cd03246 ABCC_Protease_Secretio 96.0 0.039 8.5E-07 54.2 9.8 118 192-314 29-160 (173)
271 cd01394 radB RadB. The archaea 96.0 0.027 5.9E-07 57.9 9.1 43 190-234 18-60 (218)
272 COG1875 NYN ribonuclease and A 96.0 0.027 5.8E-07 59.4 8.7 133 166-309 226-387 (436)
273 PRK05800 cobU adenosylcobinami 96.0 0.013 2.8E-07 57.0 6.1 152 193-370 3-169 (170)
274 cd01131 PilT Pilus retraction 96.0 0.013 2.8E-07 59.0 6.3 110 192-313 2-112 (198)
275 COG2884 FtsE Predicted ATPase 96.0 0.094 2E-06 50.3 11.3 124 190-317 27-204 (223)
276 cd03222 ABC_RNaseL_inhibitor T 96.0 0.065 1.4E-06 52.5 10.9 104 191-315 25-137 (177)
277 PRK05480 uridine/cytidine kina 96.0 0.069 1.5E-06 54.4 11.7 25 190-214 5-29 (209)
278 TIGR02012 tigrfam_recA protein 96.0 0.018 3.9E-07 61.6 7.5 85 189-280 53-143 (321)
279 KOG2123 Uncharacterized conser 96.0 0.00073 1.6E-08 67.7 -2.7 99 544-652 18-123 (388)
280 cd00983 recA RecA is a bacter 96.0 0.018 4E-07 61.6 7.5 85 189-280 53-143 (325)
281 KOG2035 Replication factor C, 96.0 0.049 1.1E-06 55.2 9.8 193 166-368 15-223 (351)
282 KOG0735 AAA+-type ATPase [Post 96.0 0.073 1.6E-06 60.9 12.2 73 190-280 430-504 (952)
283 PRK08233 hypothetical protein; 96.0 0.021 4.6E-07 56.8 7.6 24 191-214 3-26 (182)
284 PF08423 Rad51: Rad51; InterP 95.9 0.019 4E-07 60.2 7.4 56 190-246 37-96 (256)
285 PRK11608 pspF phage shock prot 95.9 0.029 6.3E-07 61.3 9.1 133 165-309 7-150 (326)
286 TIGR03499 FlhF flagellar biosy 95.9 0.021 4.6E-07 60.8 7.9 87 190-278 193-280 (282)
287 PRK06696 uridine kinase; Valid 95.9 0.0078 1.7E-07 61.9 4.5 43 169-214 3-45 (223)
288 cd00544 CobU Adenosylcobinamid 95.9 0.022 4.7E-07 55.3 7.2 147 194-368 2-167 (169)
289 COG1618 Predicted nucleotide k 95.9 0.0065 1.4E-07 56.2 3.2 24 191-214 5-28 (179)
290 COG0572 Udk Uridine kinase [Nu 95.9 0.015 3.2E-07 57.8 5.9 77 190-271 7-85 (218)
291 PRK15455 PrkA family serine pr 95.9 0.0045 9.7E-08 70.0 2.6 49 165-213 77-125 (644)
292 PRK05703 flhF flagellar biosyn 95.9 0.069 1.5E-06 60.3 12.0 103 191-295 221-326 (424)
293 PRK12724 flagellar biosynthesi 95.9 0.045 9.9E-07 60.3 10.0 24 190-213 222-245 (432)
294 cd03230 ABC_DR_subfamily_A Thi 95.8 0.051 1.1E-06 53.4 9.6 119 191-315 26-160 (173)
295 COG4608 AppF ABC-type oligopep 95.8 0.067 1.5E-06 54.8 10.5 126 190-318 38-178 (268)
296 KOG0733 Nuclear AAA ATPase (VC 95.8 0.17 3.7E-06 57.0 14.3 98 164-281 190-293 (802)
297 PF00485 PRK: Phosphoribulokin 95.8 0.039 8.4E-07 55.4 8.8 79 193-273 1-86 (194)
298 COG1136 SalX ABC-type antimicr 95.8 0.11 2.5E-06 52.2 11.8 63 256-318 146-211 (226)
299 PRK14722 flhF flagellar biosyn 95.8 0.066 1.4E-06 58.7 10.9 90 190-281 136-226 (374)
300 PF00448 SRP54: SRP54-type pro 95.8 0.031 6.7E-07 55.9 7.8 56 191-248 1-57 (196)
301 TIGR01650 PD_CobS cobaltochela 95.8 0.16 3.5E-06 54.3 13.4 157 166-340 47-233 (327)
302 TIGR01817 nifA Nif-specific re 95.8 0.069 1.5E-06 63.0 12.1 132 163-309 195-340 (534)
303 PRK15429 formate hydrogenlyase 95.8 0.047 1E-06 66.5 10.8 134 164-309 376-520 (686)
304 PRK09354 recA recombinase A; P 95.7 0.027 5.9E-07 60.8 7.6 85 189-280 58-148 (349)
305 KOG0728 26S proteasome regulat 95.7 0.43 9.2E-06 47.5 14.9 190 166-376 148-366 (404)
306 COG1419 FlhF Flagellar GTP-bin 95.7 0.094 2E-06 57.0 11.5 105 190-297 202-310 (407)
307 cd03115 SRP The signal recogni 95.7 0.084 1.8E-06 51.9 10.5 22 193-214 2-23 (173)
308 PRK06067 flagellar accessory p 95.7 0.069 1.5E-06 55.5 10.4 87 189-280 23-130 (234)
309 TIGR02238 recomb_DMC1 meiotic 95.7 0.041 9E-07 59.2 8.8 57 190-247 95-155 (313)
310 KOG1947 Leucine rich repeat pr 95.6 0.0023 5E-08 75.0 -1.0 62 596-657 186-254 (482)
311 COG0466 Lon ATP-dependent Lon 95.6 0.012 2.6E-07 67.4 4.6 166 163-340 322-508 (782)
312 PRK13948 shikimate kinase; Pro 95.6 0.12 2.5E-06 50.9 10.9 24 190-213 9-32 (182)
313 PTZ00301 uridine kinase; Provi 95.6 0.021 4.6E-07 57.5 5.8 24 190-213 2-25 (210)
314 cd03229 ABC_Class3 This class 95.6 0.065 1.4E-06 53.0 9.2 122 191-315 26-166 (178)
315 PRK05439 pantothenate kinase; 95.5 0.055 1.2E-06 57.7 8.9 80 189-271 84-166 (311)
316 PRK12727 flagellar biosynthesi 95.5 0.048 1E-06 61.8 8.6 88 190-280 349-438 (559)
317 PRK07667 uridine kinase; Provi 95.5 0.017 3.7E-07 57.9 4.7 38 173-214 3-40 (193)
318 TIGR02974 phageshock_pspF psp 95.5 0.044 9.6E-07 59.8 8.2 129 166-309 1-143 (329)
319 cd02025 PanK Pantothenate kina 95.4 0.043 9.4E-07 56.1 7.6 74 193-268 1-76 (220)
320 PLN00020 ribulose bisphosphate 95.4 0.027 5.8E-07 60.3 6.0 26 189-214 146-171 (413)
321 PRK12723 flagellar biosynthesi 95.4 0.14 3.1E-06 56.6 11.9 104 190-296 173-282 (388)
322 TIGR00554 panK_bact pantothena 95.4 0.063 1.4E-06 56.9 8.8 79 189-270 60-141 (290)
323 COG5238 RNA1 Ran GTPase-activa 95.4 0.02 4.3E-07 57.6 4.6 84 572-656 27-130 (388)
324 COG0464 SpoVK ATPases of the A 95.4 0.16 3.5E-06 59.4 13.1 134 189-342 274-425 (494)
325 PRK09270 nucleoside triphospha 95.4 0.044 9.5E-07 56.7 7.4 26 189-214 31-56 (229)
326 TIGR02239 recomb_RAD51 DNA rep 95.4 0.068 1.5E-06 57.8 9.1 57 190-247 95-155 (316)
327 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.092 2E-06 50.7 9.2 117 192-316 26-146 (157)
328 PRK05022 anaerobic nitric oxid 95.3 0.073 1.6E-06 62.2 10.0 133 163-309 186-331 (509)
329 cd03215 ABC_Carb_Monos_II This 95.3 0.11 2.3E-06 51.6 9.8 53 263-315 115-169 (182)
330 PRK14974 cell division protein 95.3 0.15 3.2E-06 55.3 11.5 113 190-305 139-259 (336)
331 PLN03187 meiotic recombination 95.3 0.07 1.5E-06 58.0 8.9 57 190-247 125-185 (344)
332 PF03215 Rad17: Rad17 cell cyc 95.3 0.13 2.9E-06 59.3 11.6 59 165-228 20-78 (519)
333 PRK00889 adenylylsulfate kinas 95.3 0.086 1.9E-06 51.9 9.0 25 190-214 3-27 (175)
334 KOG0739 AAA+-type ATPase [Post 95.3 0.29 6.2E-06 50.2 12.3 177 164-367 133-335 (439)
335 PF13238 AAA_18: AAA domain; P 95.3 0.012 2.7E-07 54.5 2.7 21 194-214 1-21 (129)
336 PRK10733 hflB ATP-dependent me 95.2 0.18 3.9E-06 60.5 13.0 131 192-342 186-337 (644)
337 cd01125 repA Hexameric Replica 95.2 0.18 3.9E-06 52.6 11.6 21 193-213 3-23 (239)
338 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.13 2.9E-06 51.8 10.3 122 191-315 26-169 (200)
339 PRK04301 radA DNA repair and r 95.2 0.099 2.1E-06 57.0 9.9 57 190-247 101-161 (317)
340 PF12061 DUF3542: Protein of u 95.2 0.05 1.1E-06 55.7 6.8 77 8-85 296-373 (402)
341 KOG1644 U2-associated snRNP A' 95.2 0.029 6.4E-07 54.1 4.9 100 576-679 43-149 (233)
342 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.055 1.2E-06 59.5 7.6 106 190-310 61-167 (362)
343 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.048 1E-06 55.5 6.7 23 191-213 29-51 (213)
344 COG1124 DppF ABC-type dipeptid 95.1 0.3 6.5E-06 49.1 11.8 57 262-318 151-210 (252)
345 cd01122 GP4d_helicase GP4d_hel 95.1 0.21 4.6E-06 53.2 12.1 54 190-246 29-82 (271)
346 PRK00771 signal recognition pa 95.1 0.16 3.4E-06 57.2 11.3 55 190-247 94-150 (437)
347 COG0468 RecA RecA/RadA recombi 95.1 0.084 1.8E-06 55.3 8.4 89 189-280 58-151 (279)
348 PRK07132 DNA polymerase III su 95.0 1.7 3.6E-05 46.6 18.3 153 191-373 18-185 (299)
349 PLN03186 DNA repair protein RA 95.0 0.11 2.3E-06 56.7 9.5 57 190-247 122-182 (342)
350 TIGR00959 ffh signal recogniti 95.0 0.11 2.4E-06 58.2 9.9 24 190-213 98-121 (428)
351 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.1 2.3E-06 51.8 8.8 21 193-213 1-21 (183)
352 PF01583 APS_kinase: Adenylyls 95.0 0.028 6E-07 53.2 4.1 36 191-228 2-37 (156)
353 COG4618 ArpD ABC-type protease 95.0 0.15 3.3E-06 56.4 10.1 56 262-317 482-539 (580)
354 cd02019 NK Nucleoside/nucleoti 95.0 0.016 3.5E-07 46.7 2.3 22 193-214 1-22 (69)
355 PF00006 ATP-synt_ab: ATP synt 94.9 0.081 1.7E-06 53.4 7.6 82 192-279 16-114 (215)
356 cd02027 APSK Adenosine 5'-phos 94.9 0.23 4.9E-06 47.3 10.4 22 193-214 1-22 (149)
357 cd01124 KaiC KaiC is a circadi 94.9 0.17 3.7E-06 50.4 10.1 45 193-241 1-45 (187)
358 TIGR02236 recomb_radA DNA repa 94.9 0.14 2.9E-06 55.9 10.0 57 190-247 94-154 (310)
359 PTZ00088 adenylate kinase 1; P 94.9 0.074 1.6E-06 54.5 7.4 20 194-213 9-28 (229)
360 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.43 9.3E-06 48.5 13.1 53 263-315 136-189 (207)
361 cd03263 ABC_subfamily_A The AB 94.9 0.25 5.3E-06 50.8 11.4 53 263-315 144-197 (220)
362 cd02021 GntK Gluconate kinase 94.9 0.17 3.7E-06 48.3 9.5 22 193-214 1-22 (150)
363 PRK10867 signal recognition pa 94.9 0.09 2E-06 59.0 8.5 24 190-213 99-122 (433)
364 PRK13539 cytochrome c biogenes 94.8 0.2 4.3E-06 50.9 10.4 62 263-327 138-201 (207)
365 KOG2739 Leucine-rich acidic nu 94.8 0.015 3.2E-07 58.7 1.9 89 590-682 35-128 (260)
366 TIGR00064 ftsY signal recognit 94.8 0.11 2.5E-06 54.8 8.8 88 190-280 71-164 (272)
367 KOG0731 AAA+-type ATPase conta 94.8 0.5 1.1E-05 55.9 14.5 182 165-370 312-521 (774)
368 COG0542 clpA ATP-binding subun 94.8 0.12 2.6E-06 61.3 9.6 44 164-213 170-213 (786)
369 PRK13543 cytochrome c biogenes 94.8 0.42 9.1E-06 48.8 12.7 23 192-214 38-60 (214)
370 PF03308 ArgK: ArgK protein; 94.8 0.041 8.9E-07 55.9 5.0 63 172-238 14-76 (266)
371 TIGR03574 selen_PSTK L-seryl-t 94.8 0.14 3E-06 53.8 9.2 22 193-214 1-22 (249)
372 PF07726 AAA_3: ATPase family 94.8 0.015 3.3E-07 52.3 1.7 27 194-222 2-28 (131)
373 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.17 3.8E-06 52.5 9.8 49 190-242 20-68 (237)
374 cd03244 ABCC_MRP_domain2 Domai 94.7 0.34 7.4E-06 49.8 12.0 53 263-315 150-203 (221)
375 PRK08533 flagellar accessory p 94.7 0.22 4.9E-06 51.3 10.5 49 190-242 23-71 (230)
376 KOG0734 AAA+-type ATPase conta 94.7 0.25 5.5E-06 54.8 11.0 52 164-215 304-361 (752)
377 PRK09544 znuC high-affinity zi 94.7 0.33 7.1E-06 51.0 11.9 24 191-214 30-53 (251)
378 TIGR00235 udk uridine kinase. 94.7 0.028 6.1E-07 57.1 3.7 25 190-214 5-29 (207)
379 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.031 6.8E-07 59.6 4.0 51 163-213 60-110 (358)
380 PRK12726 flagellar biosynthesi 94.7 0.36 7.8E-06 52.5 12.0 90 190-281 205-296 (407)
381 cd03282 ABC_MSH4_euk MutS4 hom 94.6 0.085 1.8E-06 53.1 7.0 119 191-318 29-159 (204)
382 KOG0733 Nuclear AAA ATPase (VC 94.6 0.46 1E-05 53.7 12.9 155 191-367 545-718 (802)
383 PRK06547 hypothetical protein; 94.6 0.041 8.8E-07 53.7 4.5 25 190-214 14-38 (172)
384 PF08433 KTI12: Chromatin asso 94.6 0.079 1.7E-06 55.7 7.0 23 192-214 2-24 (270)
385 TIGR02858 spore_III_AA stage I 94.6 0.16 3.5E-06 53.4 9.2 129 172-315 97-234 (270)
386 TIGR00708 cobA cob(I)alamin ad 94.6 0.27 5.8E-06 47.5 9.9 119 191-310 5-140 (173)
387 cd03235 ABC_Metallic_Cations A 94.6 0.38 8.2E-06 49.1 11.9 24 191-214 25-48 (213)
388 COG1703 ArgK Putative periplas 94.6 0.034 7.4E-07 57.2 3.8 64 174-241 38-101 (323)
389 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 34.6 0.9 20 599-619 1-20 (22)
390 PF12775 AAA_7: P-loop contain 94.5 0.021 4.5E-07 60.4 2.4 95 174-287 23-117 (272)
391 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.7E-07 34.5 1.0 20 577-596 2-21 (22)
392 COG0714 MoxR-like ATPases [Gen 94.5 0.088 1.9E-06 57.8 7.4 113 165-296 25-138 (329)
393 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.36 7.7E-06 50.0 11.6 114 190-308 19-164 (229)
394 PRK06762 hypothetical protein; 94.5 0.027 5.9E-07 55.0 2.9 23 192-214 3-25 (166)
395 PRK06002 fliI flagellum-specif 94.4 0.14 3E-06 57.3 8.6 87 190-279 164-263 (450)
396 cd03232 ABC_PDR_domain2 The pl 94.4 0.28 6.2E-06 49.1 10.3 23 191-213 33-55 (192)
397 cd03283 ABC_MutS-like MutS-lik 94.4 0.057 1.2E-06 54.2 5.2 22 192-213 26-47 (199)
398 cd03237 ABC_RNaseL_inhibitor_d 94.4 0.47 1E-05 49.5 12.1 126 191-316 25-182 (246)
399 cd03240 ABC_Rad50 The catalyti 94.4 0.3 6.4E-06 49.4 10.3 53 263-315 132-188 (204)
400 cd02028 UMPK_like Uridine mono 94.4 0.06 1.3E-06 53.1 5.2 22 193-214 1-22 (179)
401 COG0563 Adk Adenylate kinase a 94.4 0.056 1.2E-06 52.9 4.9 22 193-214 2-23 (178)
402 PRK10820 DNA-binding transcrip 94.4 0.12 2.5E-06 60.5 8.4 132 164-309 204-348 (520)
403 cd03253 ABCC_ATM1_transporter 94.4 0.51 1.1E-05 49.1 12.4 53 263-315 148-201 (236)
404 PTZ00035 Rad51 protein; Provis 94.3 0.26 5.7E-06 53.8 10.5 57 190-247 117-177 (337)
405 PRK13949 shikimate kinase; Pro 94.3 0.35 7.6E-06 47.1 10.3 22 193-214 3-24 (169)
406 KOG3347 Predicted nucleotide k 94.3 0.051 1.1E-06 49.6 4.0 69 192-270 8-76 (176)
407 PRK03839 putative kinase; Prov 94.3 0.029 6.2E-07 55.7 2.7 22 193-214 2-23 (180)
408 cd03269 ABC_putative_ATPase Th 94.3 0.54 1.2E-05 47.9 12.2 24 191-214 26-49 (210)
409 COG2842 Uncharacterized ATPase 94.3 0.92 2E-05 47.2 13.5 101 192-300 95-195 (297)
410 TIGR00390 hslU ATP-dependent p 94.3 0.086 1.9E-06 57.9 6.5 51 164-214 12-70 (441)
411 KOG0738 AAA+-type ATPase [Post 94.3 0.38 8.2E-06 51.4 10.8 25 190-214 244-268 (491)
412 TIGR00382 clpX endopeptidase C 94.3 0.29 6.2E-06 54.6 10.6 50 164-213 77-138 (413)
413 PRK04040 adenylate kinase; Pro 94.3 0.034 7.3E-07 55.3 3.0 23 192-214 3-25 (188)
414 cd03213 ABCG_EPDR ABCG transpo 94.3 0.38 8.2E-06 48.2 10.7 118 191-311 35-172 (194)
415 PRK11248 tauB taurine transpor 94.2 0.69 1.5E-05 48.7 13.1 23 192-214 28-50 (255)
416 TIGR01069 mutS2 MutS2 family p 94.2 0.058 1.3E-06 65.6 5.6 178 190-380 321-508 (771)
417 PRK08972 fliI flagellum-specif 94.2 0.12 2.6E-06 57.5 7.5 85 191-279 162-261 (444)
418 TIGR03575 selen_PSTK_euk L-ser 94.2 0.62 1.3E-05 50.6 12.7 21 194-214 2-22 (340)
419 PF00154 RecA: recA bacterial 94.2 0.078 1.7E-06 56.7 5.8 84 190-280 52-141 (322)
420 COG0396 sufC Cysteine desulfur 94.2 0.87 1.9E-05 45.4 12.4 60 263-322 155-216 (251)
421 cd03264 ABC_drug_resistance_li 94.2 0.37 7.9E-06 49.2 10.7 22 193-214 27-48 (211)
422 cd03268 ABC_BcrA_bacitracin_re 94.2 0.31 6.7E-06 49.6 10.0 53 263-315 137-191 (208)
423 PRK13538 cytochrome c biogenes 94.2 0.48 1E-05 48.0 11.4 56 263-318 140-197 (204)
424 cd01121 Sms Sms (bacterial rad 94.1 0.15 3.3E-06 56.3 8.1 82 190-279 81-167 (372)
425 COG1066 Sms Predicted ATP-depe 94.1 0.1 2.3E-06 56.2 6.5 82 191-281 93-179 (456)
426 TIGR01277 thiQ thiamine ABC tr 94.1 0.74 1.6E-05 46.9 12.8 24 191-214 24-47 (213)
427 TIGR03522 GldA_ABC_ATP gliding 94.1 0.54 1.2E-05 50.9 12.3 53 263-315 144-197 (301)
428 cd03226 ABC_cobalt_CbiO_domain 94.1 0.43 9.3E-06 48.4 10.9 53 263-315 137-191 (205)
429 PRK09580 sufC cysteine desulfu 94.1 0.5 1.1E-05 49.6 11.8 24 191-214 27-50 (248)
430 TIGR01360 aden_kin_iso1 adenyl 94.1 0.037 8E-07 55.3 3.1 24 190-213 2-25 (188)
431 cd03287 ABC_MSH3_euk MutS3 hom 94.1 0.41 8.8E-06 48.9 10.6 118 190-316 30-160 (222)
432 TIGR03771 anch_rpt_ABC anchore 94.1 0.57 1.2E-05 48.2 11.9 54 262-315 123-178 (223)
433 PRK12597 F0F1 ATP synthase sub 94.1 0.1 2.3E-06 58.7 6.8 88 191-279 143-246 (461)
434 cd03245 ABCC_bacteriocin_expor 94.1 0.57 1.2E-05 48.1 12.0 52 263-314 151-203 (220)
435 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.1 0.47 1E-05 48.8 11.3 23 192-214 49-71 (224)
436 cd03258 ABC_MetN_methionine_tr 94.1 0.52 1.1E-05 48.9 11.7 24 191-214 31-54 (233)
437 cd03250 ABCC_MRP_domain1 Domai 94.1 1 2.2E-05 45.6 13.6 55 261-315 136-193 (204)
438 PRK13540 cytochrome c biogenes 94.1 0.44 9.5E-06 48.1 10.8 24 191-214 27-50 (200)
439 cd03254 ABCC_Glucan_exporter_l 94.1 0.6 1.3E-05 48.3 12.1 53 263-315 150-203 (229)
440 TIGR00150 HI0065_YjeE ATPase, 94.0 0.06 1.3E-06 49.5 4.0 40 171-214 6-45 (133)
441 cd03266 ABC_NatA_sodium_export 94.0 0.4 8.7E-06 49.2 10.7 23 192-214 32-54 (218)
442 PTZ00494 tuzin-like protein; P 94.0 1.5 3.3E-05 48.0 14.8 167 161-339 368-543 (664)
443 PRK00625 shikimate kinase; Pro 94.0 0.034 7.4E-07 54.2 2.5 22 193-214 2-23 (173)
444 PRK03846 adenylylsulfate kinas 94.0 0.42 9E-06 48.1 10.5 24 190-213 23-46 (198)
445 KOG0730 AAA+-type ATPase [Post 94.0 0.54 1.2E-05 53.9 12.1 160 166-345 436-620 (693)
446 COG1936 Predicted nucleotide k 94.0 0.039 8.5E-07 52.1 2.7 20 193-212 2-21 (180)
447 COG2019 AdkA Archaeal adenylat 94.0 0.048 1E-06 50.9 3.2 23 191-213 4-26 (189)
448 COG1102 Cmk Cytidylate kinase 94.0 0.032 6.8E-07 51.9 2.0 43 193-248 2-44 (179)
449 cd03233 ABC_PDR_domain1 The pl 94.0 0.68 1.5E-05 46.8 12.0 24 191-214 33-56 (202)
450 KOG3864 Uncharacterized conser 94.0 0.0064 1.4E-07 58.6 -2.6 67 870-936 121-189 (221)
451 TIGR01420 pilT_fam pilus retra 93.9 0.11 2.3E-06 57.4 6.5 110 191-311 122-231 (343)
452 TIGR01313 therm_gnt_kin carboh 93.9 0.28 6E-06 47.6 8.8 21 194-214 1-21 (163)
453 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.17 3.6E-06 53.4 7.7 40 190-231 35-74 (259)
454 COG1120 FepC ABC-type cobalami 93.9 0.65 1.4E-05 47.9 11.6 129 190-318 27-207 (258)
455 PRK14721 flhF flagellar biosyn 93.9 0.22 4.7E-06 55.6 8.8 24 190-213 190-213 (420)
456 PRK05986 cob(I)alamin adenolsy 93.9 0.33 7.3E-06 47.5 9.0 119 190-310 21-158 (191)
457 KOG2170 ATPase of the AAA+ sup 93.9 0.19 4.1E-06 51.9 7.4 112 165-295 83-203 (344)
458 KOG1947 Leucine rich repeat pr 93.8 0.0029 6.3E-08 74.2 -6.5 34 748-781 187-223 (482)
459 PRK14723 flhF flagellar biosyn 93.8 0.21 4.5E-06 59.6 8.9 87 191-280 185-273 (767)
460 PRK09280 F0F1 ATP synthase sub 93.8 0.17 3.7E-06 56.8 7.7 88 191-279 144-247 (463)
461 cd03278 ABC_SMC_barmotin Barmo 93.8 0.31 6.8E-06 48.9 9.0 20 193-212 24-43 (197)
462 TIGR03740 galliderm_ABC gallid 93.8 0.47 1E-05 48.9 10.6 53 263-315 135-189 (223)
463 cd03251 ABCC_MsbA MsbA is an e 93.8 0.89 1.9E-05 47.2 12.8 53 263-315 149-202 (234)
464 PRK14269 phosphate ABC transpo 93.7 0.97 2.1E-05 47.3 13.0 23 192-214 29-51 (246)
465 PRK11388 DNA-binding transcrip 93.7 0.22 4.7E-06 60.3 9.2 130 164-309 325-466 (638)
466 COG1428 Deoxynucleoside kinase 93.7 0.044 9.5E-07 53.7 2.5 24 191-214 4-27 (216)
467 PRK15056 manganese/iron transp 93.7 0.85 1.9E-05 48.5 12.7 23 192-214 34-56 (272)
468 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.7 0.58 1.3E-05 48.7 11.2 52 263-314 150-202 (238)
469 PRK13650 cbiO cobalt transport 93.7 0.44 9.6E-06 50.9 10.5 52 263-314 151-205 (279)
470 smart00534 MUTSac ATPase domai 93.7 0.067 1.5E-06 53.2 3.9 21 193-213 1-21 (185)
471 PRK12678 transcription termina 93.6 0.091 2E-06 59.6 5.2 88 191-279 416-512 (672)
472 cd03252 ABCC_Hemolysin The ABC 93.6 0.79 1.7E-05 47.7 12.2 53 263-315 149-202 (237)
473 TIGR03498 FliI_clade3 flagella 93.6 0.2 4.3E-06 55.9 7.9 87 190-279 139-239 (418)
474 PRK00279 adk adenylate kinase; 93.6 0.44 9.6E-06 48.7 10.0 21 193-213 2-22 (215)
475 cd03289 ABCC_CFTR2 The CFTR su 93.6 0.52 1.1E-05 50.0 10.8 23 192-214 31-53 (275)
476 PF13481 AAA_25: AAA domain; P 93.6 0.29 6.2E-06 49.1 8.5 41 192-232 33-81 (193)
477 PRK10875 recD exonuclease V su 93.6 0.23 4.9E-06 58.6 8.8 115 191-308 167-300 (615)
478 PF11868 DUF3388: Protein of u 93.6 0.21 4.6E-06 45.9 6.5 91 171-294 36-132 (192)
479 PRK11247 ssuB aliphatic sulfon 93.6 1.1 2.4E-05 47.1 13.2 23 192-214 39-61 (257)
480 KOG3864 Uncharacterized conser 93.6 0.0044 9.5E-08 59.7 -4.3 71 818-913 120-190 (221)
481 PRK05922 type III secretion sy 93.6 0.3 6.5E-06 54.6 9.2 85 191-279 157-256 (434)
482 cd03231 ABC_CcmA_heme_exporter 93.6 0.68 1.5E-05 46.7 11.2 24 191-214 26-49 (201)
483 PRK08927 fliI flagellum-specif 93.6 0.18 4E-06 56.3 7.5 86 190-279 157-257 (442)
484 TIGR02329 propionate_PrpR prop 93.6 0.21 4.5E-06 58.0 8.3 130 165-309 213-357 (526)
485 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.16 3.4E-06 56.9 6.9 88 191-279 138-241 (449)
486 PRK06995 flhF flagellar biosyn 93.6 0.19 4.1E-06 57.0 7.7 88 191-280 256-344 (484)
487 PRK13647 cbiO cobalt transport 93.5 0.74 1.6E-05 49.0 11.9 53 263-315 149-203 (274)
488 cd03243 ABC_MutS_homologs The 93.5 0.46 9.9E-06 48.0 9.8 22 192-213 30-51 (202)
489 cd01135 V_A-ATPase_B V/A-type 93.5 0.28 6.1E-06 51.1 8.2 88 192-279 70-175 (276)
490 cd02024 NRK1 Nicotinamide ribo 93.5 0.043 9.4E-07 54.1 2.2 22 193-214 1-22 (187)
491 PRK05201 hslU ATP-dependent pr 93.5 0.13 2.9E-06 56.5 6.0 51 164-214 15-73 (443)
492 PF06309 Torsin: Torsin; Inte 93.5 0.12 2.6E-06 46.5 4.7 47 165-214 26-76 (127)
493 PRK08149 ATP synthase SpaL; Va 93.4 0.28 6.1E-06 54.8 8.6 86 190-279 150-250 (428)
494 PF13479 AAA_24: AAA domain 93.4 0.24 5.2E-06 50.5 7.5 20 192-211 4-23 (213)
495 PRK15424 propionate catabolism 93.4 0.21 4.6E-06 57.9 7.9 46 165-214 220-265 (538)
496 cd01428 ADK Adenylate kinase ( 93.4 0.33 7.3E-06 48.6 8.5 21 194-214 2-22 (194)
497 cd02023 UMPK Uridine monophosp 93.4 0.047 1E-06 55.1 2.2 21 193-213 1-21 (198)
498 COG4133 CcmA ABC-type transpor 93.4 1.2 2.7E-05 42.9 11.4 50 261-310 139-190 (209)
499 TIGR02322 phosphon_PhnN phosph 93.3 0.061 1.3E-06 53.2 3.1 23 192-214 2-24 (179)
500 COG4181 Predicted ABC-type tra 93.3 1.3 2.9E-05 41.8 11.3 85 234-318 122-215 (228)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-86 Score=783.88 Aligned_cols=621 Identities=28% Similarity=0.426 Sum_probs=494.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHhhchhhHHHHhhHHHHH
Q 001955 11 GKILEVLASQIFHEIGLAYGVQDDISNLRDTVDTIQAVLLDAEDKHSRKDHAVTIWLRRLKDAVYAAEDLLDDFSTEFLR 90 (991)
Q Consensus 11 ~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~ 90 (991)
+..++++.+.+.+++..+.++++.+..|++++..++.+++||++++ .....+..|...+++++|++||+++.|......
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~ 84 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIE 84 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677888899999999999999999999999999999999988 566788999999999999999999999987755
Q ss_pred HhhhcCCccc-ceeeeccccchhhHHHHHHHHHHHHHHHHHHHHHhh-cccccccCccc--c-cccCccccccccCcCCc
Q 001955 91 RKLMSGSRVT-KEVLLFFSKYNQFAYALEMGRKIKAIRERLESIKND-RQFHLLQQPYE--R-RVENTRRETHSFVHKED 165 (991)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 165 (991)
.+....-... ......+ -..++++.+..+..+.+++..+... ..+.....-.. . ......+++.+......
T Consensus 85 ~~~~~~l~~~~~~~~~~c----~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 85 RKANDLLSTRSVERQRLC----LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHhHHhhhhHHHHHHHh----hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 4322110000 0000000 0123444444444444444444333 33332211000 0 00111344445555555
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecCCCChHHHHHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
||.+..++++.+.|..+ +.++++|+||||+||||||++++|+.. ++.+||.++||.||+.++...++.+|++
T Consensus 161 -VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 99999999999999865 338999999999999999999999988 9999999999999999999999999999
Q ss_pred HccCCCCc--ccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH-hCCCCc
Q 001955 245 SATNRESE--KLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARI-TSKLPF 321 (991)
Q Consensus 245 ~l~~~~~~--~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~-~~~~~~ 321 (991)
.++..... ....++++..|.+.|++|||+|||||||+. .+|+.+..++|....||||++|||+..|+.. +++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 98854332 233478999999999999999999999997 5699999999999999999999999999998 788889
Q ss_pred eecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhhccCC----
Q 001955 322 HALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKV---- 397 (991)
Q Consensus 322 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~---- 397 (991)
++++.|+++|||+||++.||..... ..+.++++|++|+++|+|+|||++++|+.|+.+.+..+|.++.+...+..
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 9999999999999999999987442 33558999999999999999999999999999999999999988665542
Q ss_pred CCCccchhhhhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHHHHHhccccc
Q 001955 398 PQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQ 477 (991)
Q Consensus 398 ~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~ 477 (991)
+...+.+.+++++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+......++++|+.|+.+|+.++|++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 23345799999999999999999999999999999999999999999999999986666889999999999999999998
Q ss_pred ccccCCCCCEEEEEechhHHHHHHHhhc-----ccceeeccc-c------ccCCCceEEEEEEecCCCCCcchhhhhcCC
Q 001955 478 DAEYDEWGNIIRCKIHDLMHDLAESVAG-----TECAKVKLD-A------RNVNERTHHISCVSGFDSSLEFPTALLRAK 545 (991)
Q Consensus 478 ~~~~~~~~~~~~~~~Hdlv~~~a~~~~~-----~e~~~~~~~-~------~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 545 (991)
..... ++..+|+|||+|||||.++++ .+...+... + ...+..+|+++... +.... ...-..++
T Consensus 471 ~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~-~~~~~--~~~~~~~~ 545 (889)
T KOG4658|consen 471 EERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN-NKIEH--IAGSSENP 545 (889)
T ss_pred hcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec-cchhh--ccCCCCCC
Confidence 76543 667789999999999999999 554433332 1 11345789998843 32211 22234556
Q ss_pred CCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCC-CccccCccccCCCCccEEEccCCCCccccchhhhcccCC
Q 001955 546 NLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNS-EIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 624 (991)
Q Consensus 546 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L 624 (991)
+|++|.+..+..+-. .....+|..++.|++|||++| .+.++|+.|+.|.+||||+++++. +..+|.++++|.+|
T Consensus 546 ~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred ccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 899999888753100 113567889999999999976 567999999999999999999999 89999999999999
Q ss_pred CEEeCCCCCCCccccccccccccCcEEeeccc
Q 001955 625 QTLDLSCCDDLVELPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 625 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 656 (991)
.+||+..+..+..+|..+..|++|++|.+...
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeecc
Confidence 99999998777777777778999999998654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.5e-66 Score=652.55 Aligned_cols=727 Identities=18% Similarity=0.260 Sum_probs=475.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCcccc--------cccCccccccccCcCCceeecchhHHHHHHHHhCCCCCCCCce
Q 001955 120 GRKIKAIRERLESIKNDRQFHLLQQPYER--------RVENTRRETHSFVHKEDIIGRDGDKNEIIDRLLDSSESEIESV 191 (991)
Q Consensus 120 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 191 (991)
..++++|++++.+++...+|.+.....+. .+.. .-...+..+.+++|||+.+++++..+|.... .++
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~-~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLG-KLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHH-hhccccCcccccccchHHHHHHHHHHHcccc----Cce
Confidence 35789999999999988766654321110 0111 1112233345679999999999999886443 378
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe---cCC-----------CC-hHHHHHHHHHHccCCCC-cccC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV---SDI-----------FD-VTTIVEKMIRSATNRES-EKLD 255 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~ 255 (991)
++|+||||||+||||||+++|+ ++..+|++.+|+.. +.. +. ...++.+++.++..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999998 67788998888742 111 01 12344555555432221 1111
Q ss_pred HHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhCCCCceecCCCChHHHHHH
Q 001955 256 LDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARITSKLPFHALRGLPEDMSWSL 335 (991)
Q Consensus 256 ~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~L 335 (991)
...+++.|+++|+||||||||+. ..|+.+.......++||+||||||+..++..++...+|+++.|++++||+|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 14567778899999999999875 678888776666679999999999999998877778999999999999999
Q ss_pred HHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhhccCCCCCccchhhhhhhhccCC
Q 001955 336 FTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHL 415 (991)
Q Consensus 336 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L 415 (991)
|+++||+...+ ..++.+++++|+++|+|+|||++++|+.|+++ +..+|+.+++...... ..++.++|++||++|
T Consensus 360 F~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 99999976542 35688999999999999999999999999976 4789999887654322 246999999999999
Q ss_pred Ch-hhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHHHHHhcccccccccCCCCCEEEEEech
Q 001955 416 PS-PLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHD 494 (991)
Q Consensus 416 ~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hd 494 (991)
++ ..|.||+++|+||.++.++ .+..|++.+.... +..++.|+++||++... + +++|||
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~----~---~~~MHd 492 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE----D---IVEMHS 492 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC----C---eEEhhh
Confidence 87 5999999999999987554 3667887765432 22388999999997642 1 489999
Q ss_pred hHHHHHHHhhcccce-------eecc-------ccccCCCceEEEEEEecCCCCC-cchhhhhcCCCCcEEEecccCCCc
Q 001955 495 LMHDLAESVAGTECA-------KVKL-------DARNVNERTHHISCVSGFDSSL-EFPTALLRAKNLRTFLSTVYSSSD 559 (991)
Q Consensus 495 lv~~~a~~~~~~e~~-------~~~~-------~~~~~~~~~r~l~~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~ 559 (991)
++|+||+++++++.. .... ........++++++........ .....|..+++|+.|.+..+....
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 999999999977641 1100 0011335677777743332211 224568899999999876542110
Q ss_pred -ccchhhHhhhhhccC-CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcc
Q 001955 560 -RQLNESYCNKIVSSF-KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVE 637 (991)
Q Consensus 560 -~~~~~~~~~~~~~~~-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~ 637 (991)
...... ++.-+..+ ..|+.|.+.++.+..+|..+ ...+|++|++++|. +..+|.++..+++|+.|+|++|+.+..
T Consensus 573 ~~~~~~~-lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 573 KKEVRWH-LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred cccceee-cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCc
Confidence 000000 12222333 45788888888888887776 46788888888877 777777777888888888887777777
Q ss_pred ccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhccc
Q 001955 638 LPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEA 717 (991)
Q Consensus 638 lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~ 717 (991)
+|. ++.+++|++|++++|..+..+|..++++++|+.|++..+.....++.-.++++|+ .+.+.++..... +. ..
T Consensus 650 ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~-~L~Lsgc~~L~~--~p--~~ 723 (1153)
T PLN03210 650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY-RLNLSGCSRLKS--FP--DI 723 (1153)
T ss_pred CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC-EEeCCCCCCccc--cc--cc
Confidence 774 7778888888888887777888888888888888776654332222111233333 333333221110 00 01
Q ss_pred CCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcc--------cccccccCceeeccccccccCC
Q 001955 718 KEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSW--------LSSVTNLTMIDISICIKCQYIP 789 (991)
Q Consensus 718 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~--------l~~l~~L~~L~L~~~~~~~~lp 789 (991)
..+|+.|+++.+.... +.....+++|..|.+.++....++.. ...+++|+.|+|++|.....+|
T Consensus 724 ~~nL~~L~L~~n~i~~--------lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 724 STNISWLDLDETAIEE--------FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred cCCcCeeecCCCcccc--------ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 1344444444332100 00001224444444444322222111 1123566666666665555555
Q ss_pred -CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCC
Q 001955 790 -ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNT 868 (991)
Q Consensus 790 -~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 868 (991)
.++++++|+.|++.+|..+..++.. . .+++|+.|++++|..+..++.
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~LP~~----~-~L~sL~~L~Ls~c~~L~~~p~--------------------------- 843 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETLPTG----I-NLESLESLDLSGCSRLRTFPD--------------------------- 843 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCeeCCC----C-CccccCEEECCCCCccccccc---------------------------
Confidence 4566666666666666555544221 1 456666666666655543321
Q ss_pred CCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCC
Q 001955 869 AEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILP 940 (991)
Q Consensus 869 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 940 (991)
..++|+.|+++++ .++.+|. .+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++..++
T Consensus 844 ---~~~nL~~L~Ls~n-~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 844 ---ISTNISDLNLSRT-GIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ---cccccCEeECCCC-CCccChH-HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 2245666666665 5666665 35566777777777777777776666667777777777777666543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-43 Score=382.93 Aligned_cols=278 Identities=35% Similarity=0.601 Sum_probs=225.7
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN 248 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 248 (991)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.+++..+...++.+++.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999754 378999999999999999999999977789999999999999999999999999999986
Q ss_pred CCC---cccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhCC-CCceec
Q 001955 249 RES---EKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARITSK-LPFHAL 324 (991)
Q Consensus 249 ~~~---~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~-~~~~~l 324 (991)
... ...+.+++...+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 632 4567888999999999999999999999986 5888888888877789999999999988876654 568999
Q ss_pred CCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhhccCCCC---Cc
Q 001955 325 RGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQ---EE 401 (991)
Q Consensus 325 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~~~---~~ 401 (991)
++|+.++|++||.+.++... ....+.+.+++++|+++|+|+||||+++|++|+.+.+..+|.++.+.......+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998765 122345567899999999999999999999997766778898887654444322 34
Q ss_pred cchhhhhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCC
Q 001955 402 SDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLS 453 (991)
Q Consensus 402 ~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 453 (991)
..+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5789999999999999999999999999999999999999999999999754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.1e-26 Score=294.60 Aligned_cols=439 Identities=19% Similarity=0.202 Sum_probs=242.0
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc-cCccccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET-VPSLIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-lp~~~~~l~ 598 (991)
.+++.+.+ ..+......+..+..+++|++|.+.++...... +..++..+++|++|+|++|.+.. +|. +.++
T Consensus 69 ~~v~~L~L-~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i-----p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDL-SGKNISGKISSAIFRLPYIQTINLSNNQLSGPI-----PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEe-cCCCccccCChHHhCCCCCCEEECCCCccCCcC-----ChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 35677777 444444445667788888888888877654332 34455677888888888887763 443 4577
Q ss_pred CccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCcc
Q 001955 599 HLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLF 678 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~ 678 (991)
+|++|+|++|.+.+.+|..++++++|++|+|++|...+.+|..++++++|++|++++|.....+|..++++++|++|++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 77777777777556777777777777777777776666777777777777777777776666677777777777777776
Q ss_pred ccCCc-CCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEe
Q 001955 679 MVGRK-TQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTII 757 (991)
Q Consensus 679 ~~~~~-~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 757 (991)
.+... .....+..+.+|+ .+.+..... .......+..+++|+.|.++.+.... .....+...++|+.|.+.
T Consensus 221 ~n~l~~~~p~~l~~l~~L~-~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLN-HLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSG------PIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CCccCCcCChhHhcCCCCC-EEECcCcee-ccccChhHhCCCCCCEEECcCCeeec------cCchhHhhccCcCEEECc
Confidence 66554 2333445555555 444433221 11112234455667777766553210 111122234566666666
Q ss_pred eeCCC-ccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccc
Q 001955 758 RFGGI-RLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPE 835 (991)
Q Consensus 758 ~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~ 835 (991)
++... .+|.++..+++|+.|++++|...+.+| .+..+++|+.|++.+ +.+....+..++.+++|+.|++++|.-
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~----n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS----NKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC----CCCcCcCChHHhCCCCCcEEECCCCee
Confidence 55432 455666666666666666665555444 355666666666665 344444444455566666666665532
Q ss_pred cccccccCC-------------------CccccCCCCCC-CCccceeec-ccCCCCCCCCccCeeeeccCCCCCCCCCcc
Q 001955 836 LKGWWRTDG-------------------STTQTAEPPFS-HPLQQTMMR-TTNTAEPPFSKLKSLTIESIDDLETWPEEM 894 (991)
Q Consensus 836 L~~~~~~~~-------------------~~~~~~~~~l~-~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 894 (991)
...++.... ......|+.+. +.+....+. .....+..+++|+.|++++|.-...++ ..
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~ 447 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN-SR 447 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC-hh
Confidence 111110000 00011122222 111111110 111123445666666666653222222 23
Q ss_pred CCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC----cCeEEEecCcchhhhhcCCCCCCCCC
Q 001955 895 MPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ----LQSLEIIQCPQLSERCGNNMAVDWPK 970 (991)
Q Consensus 895 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~----L~~L~i~~c~~L~~~~~~~~~~~~~~ 970 (991)
+..+++|+.|++++|...+.+|..+ .+++|+.|++++|+....+|..+. |+.|++++|.-.... ...+..
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~ 521 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI-----PDELSS 521 (968)
T ss_pred hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC-----ChHHcC
Confidence 4456666666666665555555433 346666666666665555555433 666666665322111 112334
Q ss_pred CCCCCeEEEcCcccc
Q 001955 971 IAHIPNIRIDNDLIQ 985 (991)
Q Consensus 971 i~~i~~~~~~~~~~~ 985 (991)
..++..+.+.++.+.
T Consensus 522 l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 522 CKKLVSLDLSHNQLS 536 (968)
T ss_pred ccCCCEEECCCCccc
Confidence 555666666665543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=6.2e-27 Score=296.93 Aligned_cols=389 Identities=19% Similarity=0.187 Sum_probs=203.9
Q ss_pred chhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcc-ccCccccCCCCccEEEccCCCCccccc
Q 001955 537 FPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE-TVPSLIGKLKHLRYFNLSHNADIKSLP 615 (991)
Q Consensus 537 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lP 615 (991)
.|..+.++++|++|.+.++..... .+..+.++++|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQ------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCc------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 344445555555555544433222 2333445555555555555554 345555555555555555555444555
Q ss_pred hhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc-CCcccccCccc
Q 001955 616 DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK-TQLSQLNGLNK 694 (991)
Q Consensus 616 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~-~~~~~l~~l~~ 694 (991)
..++++++|++|++++|...+.+|..+.++++|++|++++|.....+|..+.++++|+.|++..+... .....+..+.+
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 55555555555555554444445555555555555555555444445555555555555555444333 11122233333
Q ss_pred CCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCC-ccCcccccccc
Q 001955 695 LRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGI-RLSSWLSSVTN 773 (991)
Q Consensus 695 L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~ 773 (991)
|+ .+.+.+..-. ......+..+.+|+.|+++++... ......+...++|+.|.+.++... .+|.++..+++
T Consensus 334 L~-~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~------~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 334 LQ-VLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLT------GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred CC-EEECcCCCCc-CcCChHHhCCCCCcEEECCCCeeE------eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 33 3333221110 011112333455555555544311 011122223455666666655432 45666667777
Q ss_pred cCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCC
Q 001955 774 LTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEP 852 (991)
Q Consensus 774 L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 852 (991)
|+.|++++|...+.+| .+..+++|+.|++++ +.+.+..+.....+++|+.|++++|.-...++.... .+
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------~~ 475 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISN----NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------SK 475 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcC----CcccCccChhhccCCCCcEEECcCceeeeecCcccc------cc
Confidence 7777777776665555 466677777777776 455444455555677777777777754332221110 01
Q ss_pred CCCCCccceeecccCC------CCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCC
Q 001955 853 PFSHPLQQTMMRTTNT------AEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLK 926 (991)
Q Consensus 853 ~l~~~~~~l~~~~~~~------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 926 (991)
.++.+.+..+.. .+..+++|+.|++++|.-...+|. .+.++++|+.|+|++|...+.+|..+..+++|+
T Consensus 476 ----~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 476 ----RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred ----cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 112222222111 234566777777777744444444 466677777777777766666777777777777
Q ss_pred eEeeecCCCCCcCCCCCC----cCeEEEecCc
Q 001955 927 TVGIYDCPNMAILPEGLQ----LQSLEIIQCP 954 (991)
Q Consensus 927 ~L~l~~c~~l~~lp~~~~----L~~L~i~~c~ 954 (991)
.|++++|+....+|..+. |+.|++++|+
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 777777776667776543 7777777765
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3e-22 Score=253.47 Aligned_cols=328 Identities=22% Similarity=0.279 Sum_probs=242.9
Q ss_pred cchhhhhcC-CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCcccc
Q 001955 536 EFPTALLRA-KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSL 614 (991)
Q Consensus 536 ~~~~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l 614 (991)
.+|..+..+ .+||.|.+.++.... ++..+ .+.+|+.|+|++|.+..+|..+..+++|++|+|++|..++.+
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~-------lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRC-------MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCC-------CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 455666555 469999888765432 23233 568999999999999999999999999999999998778889
Q ss_pred chhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCccc
Q 001955 615 PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNK 694 (991)
Q Consensus 615 P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~ 694 (991)
|. ++.+++|++|+|++|..+..+|..+++|++|++|++++|..++.+|..+ ++++|+.|++.++.....++.. ..+
T Consensus 651 p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~n 726 (1153)
T PLN03210 651 PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STN 726 (1153)
T ss_pred Cc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCC
Confidence 86 8999999999999999999999999999999999999999999999877 7999999999877544333221 122
Q ss_pred CCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhc--cCCCCCCcceEEEeeeC-CCccCcccccc
Q 001955 695 LRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLE--GLKPHQNLKELTIIRFG-GIRLSSWLSSV 771 (991)
Q Consensus 695 L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~l~~~~~L~~L~l~~~~-~~~lp~~l~~l 771 (991)
+. .+.+.+... ..+.....+++|..|.+..+....... ....+. ....+++|+.|.+.++. ...+|.+++++
T Consensus 727 L~-~L~L~~n~i---~~lP~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L 801 (1153)
T PLN03210 727 IS-WLDLDETAI---EEFPSNLRLENLDELILCEMKSEKLWE-RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801 (1153)
T ss_pred cC-eeecCCCcc---ccccccccccccccccccccchhhccc-cccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence 32 333332211 111111235667777665432110000 000000 01124689999998874 45689999999
Q ss_pred cccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCC
Q 001955 772 TNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAE 851 (991)
Q Consensus 772 ~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 851 (991)
++|+.|+|++|..++.+|....+++|+.|++++|..+..+.. ..++|+.|+++++ .++.++.
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~n-~i~~iP~---------- 863 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSRT-GIEEVPW---------- 863 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-------cccccCEeECCCC-CCccChH----------
Confidence 999999999999888999766899999999999987755422 2468999999876 3333322
Q ss_pred CCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc
Q 001955 852 PPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP 916 (991)
Q Consensus 852 ~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 916 (991)
.+..+++|+.|++++|+++..+|. ....+++|+.|++++|..++.++
T Consensus 864 -----------------si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 -----------------WIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -----------------HHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCccccccc
Confidence 245789999999999999999987 46779999999999999887654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=232.64 Aligned_cols=303 Identities=20% Similarity=0.281 Sum_probs=198.5
Q ss_pred hccCCcccEEEccCCCcc--ccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc-cccccc
Q 001955 571 VSSFKCLRTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD-IGKMVS 647 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~ 647 (991)
++.++.||.+++..|++. .+|..+-+|..|..||||+|. +.+.|..+..-+++-+|+||+| .+..+|.. +.+|+.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 456666777777776665 466666677777777777777 6777777777777777777763 45666655 356677
Q ss_pred CcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEE
Q 001955 648 LRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQ 727 (991)
Q Consensus 648 L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~ 727 (991)
|-.||+++| .++.+|+.+..|.+|++|.++++... ......+.++..|+.|.++
T Consensus 152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-------------------------hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-------------------------HFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-------------------------HHHHhcCccchhhhhhhcc
Confidence 777777766 66677777777777777776555432 1222233334444444444
Q ss_pred ecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeecccccc
Q 001955 728 WDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSA 807 (991)
Q Consensus 728 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~ 807 (991)
.... .-.+....+....+|..++++.+....+|..+-.+++|+.|+|++|..++.--..+...+|+.|++++
T Consensus 206 ~TqR-----Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr--- 277 (1255)
T KOG0444|consen 206 NTQR-----TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR--- 277 (1255)
T ss_pred cccc-----hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc---
Confidence 3321 11223334444567777777777777777777788888888888876544333455567777887777
Q ss_pred ceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCC
Q 001955 808 LEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDL 887 (991)
Q Consensus 808 l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 887 (991)
|.+. ..|.....+++|+.|.+.++. +.......+++.+.+|+.+..+++ ++
T Consensus 278 -NQLt-~LP~avcKL~kL~kLy~n~Nk--------------------------L~FeGiPSGIGKL~~Levf~aanN-~L 328 (1255)
T KOG0444|consen 278 -NQLT-VLPDAVCKLTKLTKLYANNNK--------------------------LTFEGIPSGIGKLIQLEVFHAANN-KL 328 (1255)
T ss_pred -chhc-cchHHHhhhHHHHHHHhccCc--------------------------ccccCCccchhhhhhhHHHHhhcc-cc
Confidence 4442 234455567777777765551 223334445677888888887776 67
Q ss_pred CCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCC
Q 001955 888 ETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILP 940 (991)
Q Consensus 888 ~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 940 (991)
+-.|+ ++..|+.|+.|.++.| .+..+|+.++-|+-|+.|++.+||++---|
T Consensus 329 ElVPE-glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 329 ELVPE-GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccCch-hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 76666 5777888999998887 677788888888999999999988876444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=6.5e-23 Score=219.15 Aligned_cols=335 Identities=21% Similarity=0.209 Sum_probs=233.0
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKH 599 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 599 (991)
+...|+++.++.-.+ ....+..++.||++.+..|...... +|.-+..+..|.+||||+|++.+.|..+.+-++
T Consensus 55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsG-----iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCC-----CCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 456677773332222 3456778889999988877654433 344456899999999999999999999999999
Q ss_pred ccEEEccCCCCccccchhh-hcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCcc
Q 001955 600 LRYFNLSHNADIKSLPDSV-SRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLF 678 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~i-~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~ 678 (991)
+-+|+||+|. +.++|.++ -+|..|-+||||+ +.+..+|+.+..|.+|++|.+++|+....--..+-.|++|++|.++
T Consensus 128 ~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 9999999999 99999875 5899999999999 5689999999999999999999995433222334456777777775
Q ss_pred ccCCc--CCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEE
Q 001955 679 MVGRK--TQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTI 756 (991)
Q Consensus 679 ~~~~~--~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 756 (991)
+.... .... .+..+.+|..++++.+.... ..+.+-...+|+.|.+
T Consensus 206 ~TqRTl~N~Pt--------------------------sld~l~NL~dvDlS~N~Lp~-------vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 206 NTQRTLDNIPT--------------------------SLDDLHNLRDVDLSENNLPI-------VPECLYKLRNLRRLNL 252 (1255)
T ss_pred cccchhhcCCC--------------------------chhhhhhhhhccccccCCCc-------chHHHhhhhhhheecc
Confidence 54332 1111 12233445555555443210 1122223467888888
Q ss_pred eeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceecc-CCCCCCCCCCCCccEEeeccccc
Q 001955 757 IRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYIS-SSSPPSTTIFPSLEELRIFACPE 835 (991)
Q Consensus 757 ~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~L~~L~l~~~~~ 835 (991)
+++..+.+....+.-.+|++|+++.|+.+.....+..|+.|+.|.+.+ |.+. ..+|+.++.+.+|+.+...++ +
T Consensus 253 S~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~----NkL~FeGiPSGIGKL~~Levf~aanN-~ 327 (1255)
T KOG0444|consen 253 SGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN----NKLTFEGIPSGIGKLIQLEVFHAANN-K 327 (1255)
T ss_pred CcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc----CcccccCCccchhhhhhhHHHHhhcc-c
Confidence 888777777666777888888998886544333678888888888876 4442 335666777888888877665 3
Q ss_pred cccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcc
Q 001955 836 LKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISL 915 (991)
Q Consensus 836 L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 915 (991)
|+-.+ .++..++.|+.|.++.+ .+-.+|+ .+.-+|.|+.|++..|+++..-
T Consensus 328 LElVP---------------------------EglcRC~kL~kL~L~~N-rLiTLPe-aIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 328 LELVP---------------------------EGLCRCVKLQKLKLDHN-RLITLPE-AIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccCc---------------------------hhhhhhHHHHHhccccc-ceeechh-hhhhcCCcceeeccCCcCccCC
Confidence 33222 23456788888888776 7777887 5777899999999999999776
Q ss_pred cccCCCCCCCCeEee
Q 001955 916 PQRLNKATTLKTVGI 930 (991)
Q Consensus 916 p~~l~~l~~L~~L~l 930 (991)
|..-..-++|+.-+|
T Consensus 379 PKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 379 PKPNDARKKLEFYNI 393 (1255)
T ss_pred CCcchhhhcceeeec
Confidence 633222234444333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-21 Score=206.50 Aligned_cols=264 Identities=22% Similarity=0.261 Sum_probs=133.0
Q ss_pred CcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCE
Q 001955 547 LRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQT 626 (991)
Q Consensus 547 Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 626 (991)
-++|.+.+|...... ...|.++++|+.+++.+|.++.+|...+...||+.|+|.+|.+...-.+++.-++.|+.
T Consensus 80 t~~LdlsnNkl~~id------~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHID------FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeeeccccccccCc------HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 445655555444321 33456666677777776666666665555666666666666622222335566666666
Q ss_pred EeCCCCCCCccccc-cccccccCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCc----CCcccccCcccCCceeE
Q 001955 627 LDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRK----TQLSQLNGLNKLRGSLR 700 (991)
Q Consensus 627 L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~----~~~~~l~~l~~L~~~l~ 700 (991)
|||+.| .+..+|. .+..=.++++|++++| .++.+- ..+.++.+|-+|.++.+... ..++.|+.|..|. |.
T Consensus 154 lDLSrN-~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld--Ln 229 (873)
T KOG4194|consen 154 LDLSRN-LISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD--LN 229 (873)
T ss_pred hhhhhc-hhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh--cc
Confidence 666663 4455543 2444456666666666 333332 33555566666666555544 1222222222221 11
Q ss_pred EcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceee
Q 001955 701 IENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDI 779 (991)
Q Consensus 701 i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L 779 (991)
.+.+.. .....+.++++|+.|.+..+... ...+..+. .+.+++.|.+..+....+ ..|+..++.|+.|+|
T Consensus 230 rN~iri---ve~ltFqgL~Sl~nlklqrN~I~---kL~DG~Fy---~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 230 RNRIRI---VEGLTFQGLPSLQNLKLQRNDIS---KLDDGAFY---GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred ccceee---ehhhhhcCchhhhhhhhhhcCcc---cccCccee---eecccceeecccchhhhhhcccccccchhhhhcc
Confidence 111111 11222334444555554443210 01112222 124555555555544433 256666667777777
Q ss_pred cccccccc-CCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccc
Q 001955 780 SICIKCQY-IPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFAC 833 (991)
Q Consensus 780 ~~~~~~~~-lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~ 833 (991)
++|..... +..+...++|+.|+|+. |.+..-.++++..+..|+.|.++.+
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~----N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSS----NRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred chhhhheeecchhhhcccceeEeccc----cccccCChhHHHHHHHhhhhccccc
Confidence 76654433 22455556677777666 5554444455555666666666655
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.7e-21 Score=204.95 Aligned_cols=364 Identities=18% Similarity=0.204 Sum_probs=254.8
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~ 596 (991)
.+..++.+.+ .++.....-+..|.++++|+.+.+..|.... +|.+.....+|+.|+|.+|.|..+. +.+..
T Consensus 76 lp~~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 76 LPSQTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------IPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred Cccceeeeec-cccccccCcHHHHhcCCcceeeeeccchhhh-------cccccccccceeEEeeeccccccccHHHHHh
Confidence 4556666666 4444443346678899999999888776543 3555555667999999999998774 46888
Q ss_pred CCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCc-CCCCCCCCCc
Q 001955 597 LKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPN-GLGQLTNLRT 674 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~ 674 (991)
++.||.|||+.|. +.++|. ++..-.++++|+|++|.....--..+..|.+|..|.+++| .++.+|. .+.+|++|+.
T Consensus 148 l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 8999999999998 777776 4556678999999996543333345778889999999988 5666764 4566999999
Q ss_pred CCccccCCc----CCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCC
Q 001955 675 LPLFMVGRK----TQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQN 750 (991)
Q Consensus 675 L~l~~~~~~----~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~ 750 (991)
|++..+... ..+..|.+|.+++ +.-++.....+ +.+-.+.+++.|+|..+.... .. -.++-.+..
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~D---G~Fy~l~kme~l~L~~N~l~~---vn---~g~lfgLt~ 294 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLDD---GAFYGLEKMEHLNLETNRLQA---VN---EGWLFGLTS 294 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhh--hhhcCcccccC---cceeeecccceeecccchhhh---hh---cccccccch
Confidence 998777654 2344455555443 22223333222 334456677888887664211 11 122334577
Q ss_pred cceEEEeeeCCCcc-CcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEE
Q 001955 751 LKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEEL 828 (991)
Q Consensus 751 L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L 828 (991)
|+.|+++++....+ ++....+++|+.|+|++|+....-+ .+..|..|+.|.|++ |.+...-.+.+..+.+|+.|
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~----Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH----NSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc----cchHHHHhhHHHHhhhhhhh
Confidence 88888888776655 3445678999999999996554333 577889999999998 77765555666788999999
Q ss_pred eeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEec
Q 001955 829 RIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIEL 908 (991)
Q Consensus 829 ~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 908 (991)
+++.+. + .|.... ....+..+++|++|.+.++ ++.++|...|.++++|+.|++.+
T Consensus 371 dLr~N~-l-s~~IED----------------------aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 371 DLRSNE-L-SWCIED----------------------AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred cCcCCe-E-EEEEec----------------------chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 998772 1 122211 1223557999999999999 89999999999999999999999
Q ss_pred CCCCCcccccCCCCCCCCeEeeec
Q 001955 909 CPKLISLPQRLNKATTLKTVGIYD 932 (991)
Q Consensus 909 c~~l~~lp~~l~~l~~L~~L~l~~ 932 (991)
|+.-.-=|..|.++ .|++|.+..
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred Ccceeecccccccc-hhhhhhhcc
Confidence 96544446777777 888887753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=9e-22 Score=200.80 Aligned_cols=225 Identities=26% Similarity=0.302 Sum_probs=151.7
Q ss_pred cchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccc
Q 001955 536 EFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLP 615 (991)
Q Consensus 536 ~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP 615 (991)
..|.++.++..+..+..+.+..+. ++..+.+...|+.|+.++|.+.++|+.++.+..|..|+..+|. +.++|
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~-------lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp 153 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSE-------LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLP 153 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhh-------ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCc
Confidence 346667777777776666554432 3444567777888888888888888888888888888888777 77888
Q ss_pred hhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccC
Q 001955 616 DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKL 695 (991)
Q Consensus 616 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L 695 (991)
.+++++.+|..|++.+ +.+..+|+...+++.|++||...| .++.+|+.++.|.+|.-|++..++... +++++++..
T Consensus 154 ~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~- 229 (565)
T KOG0472|consen 154 EDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRF-LPEFPGCSL- 229 (565)
T ss_pred hHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccccc-CCCCCccHH-
Confidence 8888888888888888 456777777666888888888776 778888888888888888876654431 113333222
Q ss_pred CceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccC
Q 001955 696 RGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLT 775 (991)
Q Consensus 696 ~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~ 775 (991)
|..+++..+. +..-.-+.....+++..|++..+....+|..+.-+.+|.
T Consensus 230 -------------------------L~Elh~g~N~------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 230 -------------------------LKELHVGENQ------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred -------------------------HHHHHhcccH------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 2222222111 000001112234567777777777777888888888888
Q ss_pred ceeeccccccccCCCCCCCCccceeeccc
Q 001955 776 MIDISICIKCQYIPELDQLPSLKRLRLFK 804 (991)
Q Consensus 776 ~L~L~~~~~~~~lp~l~~l~~L~~L~l~~ 804 (991)
+|++++|....-.+.++++ .|+.|-+.+
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcC
Confidence 8888888666656678887 777777765
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1e-20 Score=212.84 Aligned_cols=375 Identities=23% Similarity=0.285 Sum_probs=220.1
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCC
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 624 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L 624 (991)
-+|++|.+.++.... ++.-+..+.+|+.|+++.|.|..+|..+.++.+|+||+|.+|. ...+|.++..+.+|
T Consensus 45 v~L~~l~lsnn~~~~-------fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISS-------FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNL 116 (1081)
T ss_pred eeeEEeecccccccc-------CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcc
Confidence 347777777765543 2344566778888888888888888888888888888888887 78888888888888
Q ss_pred CEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc-CCcccccCcccCCceeEEcc
Q 001955 625 QTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK-TQLSQLNGLNKLRGSLRIEN 703 (991)
Q Consensus 625 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~-~~~~~l~~l~~L~~~l~i~~ 703 (991)
++||+++| ....+|..+..++.+..+..++|..+..++.. . ++.+++-.+... ..+.+...++. ...++-..
T Consensus 117 ~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~i~~l~~-~ldLr~N~ 189 (1081)
T KOG0618|consen 117 QYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLIDIYNLTH-QLDLRYNE 189 (1081)
T ss_pred cccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcchhhhhe-eeecccch
Confidence 88888884 56777877777777777777776333333221 1 333333222111 11111112221 00111111
Q ss_pred cCCchhhHhhhcccC----------CCCCceEEEecCCCCccchhHhhhccCC---CCCCcceEEEeeeCCCccCccccc
Q 001955 704 LGEKQNSRLANLEAK----------EGLQSLVLQWDANKTVIYIDDALLEGLK---PHQNLKELTIIRFGGIRLSSWLSS 770 (991)
Q Consensus 704 ~~~~~~~~~~~l~~~----------~~L~~L~l~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~lp~~l~~ 770 (991)
.. ...+..+ ..|..+.++.. .++.+..+.+.+..+. -+.+|+.+.++.+....+|+|++.
T Consensus 190 ~~------~~dls~~~~l~~l~c~rn~ls~l~~~g~-~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~ 262 (1081)
T KOG0618|consen 190 ME------VLDLSNLANLEVLHCERNQLSELEISGP-SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGA 262 (1081)
T ss_pred hh------hhhhhhccchhhhhhhhcccceEEecCc-chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHh
Confidence 11 0111111 12222222221 1122222222222222 235899999999999999999999
Q ss_pred ccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCc----
Q 001955 771 VTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGST---- 846 (991)
Q Consensus 771 l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---- 846 (991)
+.+|+.|+..+|..+..+-.+....+|++|++.. +.+. -.+.....+.+|++|++..+ +|..++......
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~----nel~-yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAY----NELE-YIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNAS 336 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhh----hhhh-hCCCcccccceeeeeeehhc-cccccchHHHhhhhHH
Confidence 9999999999997754433555667777777766 2221 12334445777888887655 222222100000
Q ss_pred ---cccCCCCCC-CCc---------ccee------ecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEe
Q 001955 847 ---TQTAEPPFS-HPL---------QQTM------MRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIE 907 (991)
Q Consensus 847 ---~~~~~~~l~-~~~---------~~l~------~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~ 907 (991)
.-..|.+++ .|. ..+. ...|--.+..+++|+.|+++++ .+.++|...+.+++.|++|+++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcc
Confidence 000111111 110 0110 1111113567899999999999 8999999889999999999999
Q ss_pred cCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC---cCeEEE
Q 001955 908 LCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ---LQSLEI 950 (991)
Q Consensus 908 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~---L~~L~i 950 (991)
+| +|+.||..+..++.|++|...+|. +.++|+..+ |+.+|+
T Consensus 416 GN-kL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 416 GN-KLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred cc-hhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEec
Confidence 99 788888766666666666665554 555664333 444444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.5e-20 Score=191.89 Aligned_cols=328 Identities=20% Similarity=0.261 Sum_probs=200.4
Q ss_pred hhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhh-cccCCCEEeCCCCCCCccccccccccc
Q 001955 568 NKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVS-RLLNLQTLDLSCCDDLVELPRDIGKMV 646 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~ 646 (991)
|.-++.+..|..|+|..|++..+| +|+.|..|..|+++.|. +..+|..++ +|.+|.+|||+. +++++.|.+++.|.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence 334466667777777777777776 57777777777777776 777777766 788888888888 46788888888888
Q ss_pred cCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcC---Cccccc---CcccCCceeEEcccCCchh----------h
Q 001955 647 SLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKT---QLSQLN---GLNKLRGSLRIENLGEKQN----------S 710 (991)
Q Consensus 647 ~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~---~~~~l~---~l~~L~~~l~i~~~~~~~~----------~ 710 (991)
+|.+||+++| .+..+|..+|+| +|+.|-+.++.... .+-.-+ -++.|+....-.++..... .
T Consensus 276 sL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 8888888877 677888888888 78888775553320 000000 0111111111111111100 0
Q ss_pred HhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCC-
Q 001955 711 RLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP- 789 (991)
Q Consensus 711 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp- 789 (991)
.........+.+.|+++.-.. ..+-+++++... ..-.....++.+....+|..+..+..+.+.-+..++..+.+|
T Consensus 354 ~~~~~~~~i~tkiL~~s~~ql---t~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQL---TLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred cccchhhhhhhhhhccccccc---ccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 011111122233333322110 011122222210 112455666666667777766666555553333343555555
Q ss_pred CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCC
Q 001955 790 ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTA 869 (991)
Q Consensus 790 ~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 869 (991)
.+.++++|..|++++ +.+ ...|..++.+..|+.|+++.+ .....+..
T Consensus 430 ~l~~l~kLt~L~L~N----N~L-n~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~--------------------------- 476 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN----NLL-NDLPEEMGSLVRLQTLNLSFN-RFRMLPEC--------------------------- 476 (565)
T ss_pred HHHhhhcceeeeccc----chh-hhcchhhhhhhhhheeccccc-ccccchHH---------------------------
Confidence 577889999999987 433 445666677788999998877 22222110
Q ss_pred CCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCC
Q 001955 870 EPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPE 941 (991)
Q Consensus 870 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 941 (991)
+..+..|+.+-.+++ .+..++..++.++.+|..|++.+| .+..+|.+++++++|++|++++|| +. .|.
T Consensus 477 ~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 477 LYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred HhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 112233444444444 888998888999999999999998 788999999999999999999999 33 443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=188.17 Aligned_cols=353 Identities=24% Similarity=0.249 Sum_probs=210.9
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
..+.-.|++||+++|.+...|..+..+.+|+.|+++.|. +..+|.+++++.+|++|+|.+ +.+..+|.++..+++|+.
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccc
Confidence 344555999999999999999999999999999999998 999999999999999999997 678999999999999999
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecC
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDA 730 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 730 (991)
|+++.| ....+|..+..++.+..+...++.....+.... .+++ .+....+.. .....+..+.+ .|+++.+.
T Consensus 119 LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~--~l~~n~l~~---~~~~~i~~l~~--~ldLr~N~ 189 (1081)
T KOG0618|consen 119 LDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-IKKL--DLRLNVLGG---SFLIDIYNLTH--QLDLRYNE 189 (1081)
T ss_pred cccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-chhh--hhhhhhccc---chhcchhhhhe--eeecccch
Confidence 999998 677889989888888888877662211111111 1111 111111111 01111111111 24554443
Q ss_pred C----------CCccchhHhhhccCCC-CCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccce
Q 001955 731 N----------KTVIYIDDALLEGLKP-HQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKR 799 (991)
Q Consensus 731 ~----------~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~ 799 (991)
. ++++....+.+..+.- -++++.|....+....+- --....+|++++++.++......+++.+++|+.
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLSNLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhhcchHHHHhcccceE
Confidence 2 2222222222222111 134444444443322110 011345777888887755444446777788888
Q ss_pred eeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCcc-----------ccCCCCCCCCc-----cceee
Q 001955 800 LRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTT-----------QTAEPPFSHPL-----QQTMM 863 (991)
Q Consensus 800 L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~-----------~~~~~~l~~~~-----~~l~~ 863 (991)
|.+.+ |.+ ...+..+....+|+.|.+..| .++.++....... +..-|...+.. ..+..
T Consensus 269 l~~n~----N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 269 LNANH----NRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ecccc----hhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 87776 555 223333444566676666555 3333332221100 11111111000 00000
Q ss_pred cccC------CCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccc-cCCCCCCCCeEeeecCCCC
Q 001955 864 RTTN------TAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQ-RLNKATTLKTVGIYDCPNM 936 (991)
Q Consensus 864 ~~~~------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l 936 (991)
.... .+-..++.|+.|++.++ .+++-....+.+++.|+.|++++| .+.++|+ .+.+++.|++|++|||. |
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L 419 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-L 419 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-h
Confidence 0000 02234566777777777 444322223667889999999998 7888884 47788899999999987 8
Q ss_pred CcCCCCCC
Q 001955 937 AILPEGLQ 944 (991)
Q Consensus 937 ~~lp~~~~ 944 (991)
+.||+...
T Consensus 420 ~~Lp~tva 427 (1081)
T KOG0618|consen 420 TTLPDTVA 427 (1081)
T ss_pred hhhhHHHH
Confidence 88987765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=2.3e-14 Score=168.14 Aligned_cols=260 Identities=24% Similarity=0.235 Sum_probs=169.6
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
..-.+|+|+++.++.+|+.+. .+|+.|++++|. +..+|.. +++|++|++++| .+..+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 345678888888888887665 478888888887 6677752 577888888875 46667653 3577788887
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+|... .+|+.|++..+.... +. ...++|+.|+++.+..
T Consensus 271 ~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~----------LP-------------------~~p~~L~~LdLS~N~L--- 314 (788)
T PRK15387 271 SN-PLTHLPALP---SGLCKLWIFGNQLTS----------LP-------------------VLPPGLQELSVSDNQL--- 314 (788)
T ss_pred CC-chhhhhhch---hhcCEEECcCCcccc----------cc-------------------ccccccceeECCCCcc---
Confidence 77 455666532 445556554432210 00 0013455666655432
Q ss_pred cchhHhhhccCC-CCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccC
Q 001955 735 IYIDDALLEGLK-PHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 735 ~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
..++ .+.+|+.|.+.++....+|.. ..+|+.|+|++|... .+|.+ .++|+.|++++ +.+..
T Consensus 315 --------~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~----N~L~~ 376 (788)
T PRK15387 315 --------ASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYN----NRLTS 376 (788)
T ss_pred --------ccCCCCcccccccccccCcccccccc---ccccceEecCCCccC-CCCCC--Ccccceehhhc----ccccc
Confidence 1111 124677777777776666652 257889999888544 56654 36788888876 44432
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
++. ..++|+.|++++|. +..++. ..++|+.|++++| .++.+|.
T Consensus 377 -LP~---l~~~L~~LdLs~N~-Lt~LP~------------------------------l~s~L~~LdLS~N-~LssIP~- 419 (788)
T PRK15387 377 -LPA---LPSGLKELIVSGNR-LTSLPV------------------------------LPSELKELMVSGN-RLTSLPM- 419 (788)
T ss_pred -Ccc---cccccceEEecCCc-ccCCCC------------------------------cccCCCEEEccCC-cCCCCCc-
Confidence 221 23578888888762 332211 2357899999998 6777775
Q ss_pred cCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcC
Q 001955 894 MMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAIL 939 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 939 (991)
.+.+|+.|++++| .++.+|..+..+++|+.|++++|+.-...
T Consensus 420 ---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 420 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchH
Confidence 2457899999998 78899999999999999999999854443
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=7.9e-15 Score=176.01 Aligned_cols=230 Identities=27% Similarity=0.337 Sum_probs=145.3
Q ss_pred cCCcccEEEccCCC--ccccCc-cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCc
Q 001955 573 SFKCLRTLNLSNSE--IETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLR 649 (991)
Q Consensus 573 ~~~~L~~L~L~~~~--i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 649 (991)
.++.|++|-+.+|. +..++. .|..++.|++|||++|...+++|++|++|.+|++|+|++ +.+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45579999999986 566654 488899999999999988999999999999999999999 67899999999999999
Q ss_pred EEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEec
Q 001955 650 HLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWD 729 (991)
Q Consensus 650 ~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 729 (991)
+|++..+..+..+|..+..|.+|++|.++....... ......+..+.+|+.+.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~-----------------------~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND-----------------------KLLLKELENLEHLENLSITIS 678 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccc-----------------------hhhHHhhhcccchhhheeecc
Confidence 999999877777776677799999998865432110 111122223333333333222
Q ss_pred CCCCccchhHhhhccCCCCC----CcceEEEeeeCCCccCcccccccccCceeeccccccccCC-CC-----CC-CCccc
Q 001955 730 ANKTVIYIDDALLEGLKPHQ----NLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-EL-----DQ-LPSLK 798 (991)
Q Consensus 730 ~~~~~~~~~~~~l~~l~~~~----~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l-----~~-l~~L~ 798 (991)
.. ..++.+.... ..+.+.+.++.....+..+..+.+|+.|.+.+|...+... +. .. ++++.
T Consensus 679 s~--------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 679 SV--------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred hh--------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 11 0011111111 1122222223334445556678888888888886653211 11 11 33444
Q ss_pred eeeccccccceeccCCCCCCCCCCCCccEEeeccccccccc
Q 001955 799 RLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGW 839 (991)
Q Consensus 799 ~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 839 (991)
.+.+.+|..+.... .....|+|+.|.+..|+.++..
T Consensus 751 ~~~~~~~~~~r~l~-----~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 751 KVSILNCHMLRDLT-----WLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HHHhhccccccccc-----hhhccCcccEEEEecccccccC
Confidence 44444544333221 1224577777777777666654
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=1.2e-11 Score=156.79 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=181.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEec-CCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVS-DIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i 242 (991)
.++|-|+.-.+. |.. ....+++.|+|++|.||||++.++... ++.++|+++. ...++..+...+
T Consensus 14 ~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 446666644444 432 126789999999999999999998852 2368999985 445666777777
Q ss_pred HHHccCCCCc-------------ccCHHHHHHHHHhHhC--CceeEEEeccccccChHHHH-HHHHHhcCCCCCcEEEEe
Q 001955 243 IRSATNRESE-------------KLDLDQLQERLRGEID--GKRYLLVLDDVWNENRDKWL-ELEALLMNGVSGSKIVVT 306 (991)
Q Consensus 243 ~~~l~~~~~~-------------~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivT 306 (991)
+..+...... ..+...+...+...+. +.+++|||||+...+..... .+...+....++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7666411110 0122333333333333 67999999999776544444 344444445567789899
Q ss_pred cCcHH---HHHHhCCCCceecC----CCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhc
Q 001955 307 TRSER---VARITSKLPFHALR----GLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYY 379 (991)
Q Consensus 307 TR~~~---v~~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~ 379 (991)
||... ...........++. +|+.+|+.++|.......- -.+...+|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99732 11111122244555 9999999999987543211 1244688999999999999999887754
Q ss_pred CCChHHHHHHhhhhccCCCC-Cccchhhhh-hhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCC
Q 001955 380 NNTETYWLHFRDDELSKVPQ-EESDILPKL-KLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQ 457 (991)
Q Consensus 380 ~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l-~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 457 (991)
...... .. .+.+.. ....+...+ .-.|+.||++.+..++..|+++ . ++.+.+-. +..
T Consensus 232 ~~~~~~--~~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~------l~~------ 290 (903)
T PRK04841 232 NNSSLH--DS----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVR------VTG------ 290 (903)
T ss_pred CCCchh--hh----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHH------HcC------
Confidence 431100 00 011111 112344443 3348899999999999999997 2 34332221 111
Q ss_pred ChHhhHHHHHHHHHhcccccccccCCCCCEEEEEechhHHHHHHHhh
Q 001955 458 CPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVA 504 (991)
Q Consensus 458 ~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~~~~ 504 (991)
.+.+...+++|...+++..... ..+ .+|+.|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~-~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMD-DSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeec-CCC--CEEehhHHHHHHHHHHH
Confidence 1224678999999999753221 112 35888999999998764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.8e-13 Score=159.24 Aligned_cols=91 Identities=24% Similarity=0.428 Sum_probs=50.2
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeecc
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIES 655 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 655 (991)
+...|+++++.++.+|..+. ++|+.|+|++|. +..+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 34566666666666665443 356666666665 556665543 36666666664 3455555443 3566666666
Q ss_pred ccccCcCCcCCCCCCCCCcCCc
Q 001955 656 CLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 656 ~~~~~~lp~~l~~L~~L~~L~l 677 (991)
| .+..+|..+. ++|+.|++
T Consensus 251 N-~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDL 269 (754)
T ss_pred C-ccCcCChhHh--CCCCEEEC
Confidence 5 3445554442 34555544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1e-12 Score=154.34 Aligned_cols=240 Identities=24% Similarity=0.204 Sum_probs=133.4
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeecc
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIES 655 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 655 (991)
+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+.|++++| .+..+|... .+|+.|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCC-chhhhhhch---hhcCEEECcC
Confidence 455666666666655542 3556666666665 4455542 345566666654 244444322 3455566655
Q ss_pred ccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCcc
Q 001955 656 CLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVI 735 (991)
Q Consensus 656 ~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 735 (991)
| .+..+|.. +++|+.|+++.|.... ++. + ..+|+.|.++.+.
T Consensus 292 N-~Lt~LP~~---p~~L~~LdLS~N~L~~----Lp~---l----------------------p~~L~~L~Ls~N~----- 333 (788)
T PRK15387 292 N-QLTSLPVL---PPGLQELSVSDNQLAS----LPA---L----------------------PSELCKLWAYNNQ----- 333 (788)
T ss_pred C-cccccccc---ccccceeECCCCcccc----CCC---C----------------------cccccccccccCc-----
Confidence 5 44455542 3455555554432210 000 0 0112222222221
Q ss_pred chhHhhhccCCC-CCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCC
Q 001955 736 YIDDALLEGLKP-HQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSS 814 (991)
Q Consensus 736 ~~~~~~l~~l~~-~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~ 814 (991)
+..++. +.+|+.|.++++....+|.. .++|+.|++++|... .+|.+ +++|+.|++++ |.+..
T Consensus 334 ------L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l--~~~L~~LdLs~----N~Lt~- 396 (788)
T PRK15387 334 ------LTSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIVSG----NRLTS- 396 (788)
T ss_pred ------cccccccccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc--ccccceEEecC----CcccC-
Confidence 111111 24677777777776666653 356777888877543 46643 35788888877 44432
Q ss_pred CCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCcc
Q 001955 815 SPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEM 894 (991)
Q Consensus 815 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 894 (991)
.+. ..++|+.|++++|. +..++. .+.+|+.|++++| .++.+|..
T Consensus 397 LP~---l~s~L~~LdLS~N~-LssIP~------------------------------l~~~L~~L~Ls~N-qLt~LP~s- 440 (788)
T PRK15387 397 LPV---LPSELKELMVSGNR-LTSLPM------------------------------LPSGLLSLSVYRN-QLTRLPES- 440 (788)
T ss_pred CCC---cccCCCEEEccCCc-CCCCCc------------------------------chhhhhhhhhccC-cccccChH-
Confidence 221 24678888888873 332211 1346788899887 68888874
Q ss_pred CCCCCCccEEEEecCCCCCcccc
Q 001955 895 MPNFPSIQNISIELCPKLISLPQ 917 (991)
Q Consensus 895 ~~~l~~L~~L~l~~c~~l~~lp~ 917 (991)
+..+++|+.|++++|+.-...|.
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred HhhccCCCeEECCCCCCCchHHH
Confidence 77899999999999975554443
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.6e-10 Score=131.07 Aligned_cols=317 Identities=14% Similarity=0.050 Sum_probs=185.4
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
.++.++||+++++++...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 123455789999999999999999985332221234567777777788899999
Q ss_pred HHHHccCCC-C-cccCHHHHHHHHHhHhC--CceeEEEeccccccC----hHHHHHHHHHhcCCCCCcE--EEEecCcHH
Q 001955 242 MIRSATNRE-S-EKLDLDQLQERLRGEID--GKRYLLVLDDVWNEN----RDKWLELEALLMNGVSGSK--IVVTTRSER 311 (991)
Q Consensus 242 i~~~l~~~~-~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTTR~~~ 311 (991)
++.++.... + ...+.+++...+.+.+. +++.+||||+++.-. .+....+...+.. .++++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 999987522 1 22345667777777665 456899999997642 1223333332222 23333 566666544
Q ss_pred HHHHhC-------CCCceecCCCChHHHHHHHHHHHccC--CCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh--h--
Q 001955 312 VARITS-------KLPFHALRGLPEDMSWSLFTRMAFEQ--GSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL--Y-- 378 (991)
Q Consensus 312 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L--~-- 378 (991)
+..... ....+.+++++.++..+++..++... .....+..+..+++......|..+.|+.++-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12356899999999999998876321 1112222333344433333566778877764322 1
Q ss_pred -cCC--ChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCCC--CceecHHHHHHH--HHHcCCCc
Q 001955 379 -YNN--TETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPK--DYLIVKEQLVLL--WMAQGFLG 451 (991)
Q Consensus 379 -~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~~--w~a~g~i~ 451 (991)
+.. +.+....+.+.. -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 334444433321 1122445688999998887766553321 133555555532 23322110
Q ss_pred CCCCCCChHhhHHHHHHHHHhccccccccc--CCCCCEEEEEechh
Q 001955 452 LSIDNQCPEDVGHEYFMSLLSRSFFQDAEY--DEWGNIIRCKIHDL 495 (991)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~~Hdl 495 (991)
. .........|+.+|...+++..... +..|+.+.++++--
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~ 376 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYD 376 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCC
Confidence 0 1122345679999999999986432 33466666666533
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=4.8e-14 Score=144.86 Aligned_cols=349 Identities=19% Similarity=0.217 Sum_probs=201.2
Q ss_pred hhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCccccccccc
Q 001955 567 CNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELPRDIGK 644 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 644 (991)
++..|+.+++||.|||++|.|+.| |+.|..+..|-.|-+.++..+..+|+ .|++|..|+.|.+.-|.........+..
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 567788899999999999999877 77888888888887777444888887 4788888888888875544445566788
Q ss_pred cccCcEEeeccccccCcCCc-CCCCCCCCCcCCccccCCc--CCcccccCcccCCceeEEcccCCc-----hhhHhhhcc
Q 001955 645 MVSLRHLAIESCLSLTDMPN-GLGQLTNLRTLPLFMVGRK--TQLSQLNGLNKLRGSLRIENLGEK-----QNSRLANLE 716 (991)
Q Consensus 645 L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~--~~~~~l~~l~~L~~~l~i~~~~~~-----~~~~~~~l~ 716 (991)
|++|..|.+.+| .+..++. .+..+.+++++.+..+... ..++.+....... .....+..-. .........
T Consensus 163 L~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~-~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 163 LPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN-PIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred hhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc-hhhcccceecchHHHHHHHhcccc
Confidence 888888888887 6666776 5777888888877544311 1111111000000 0000000000 000111111
Q ss_pred cCCCC---Cce--EE-EecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccccCC
Q 001955 717 AKEGL---QSL--VL-QWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIP 789 (991)
Q Consensus 717 ~~~~L---~~L--~l-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp 789 (991)
..+.+ +++ .+ +.+.. .+..-..-+..+++|++|.+.++..+.+ +.|+..+..++.|.|..|+. ..+.
T Consensus 241 a~kf~c~~esl~s~~~~~d~~-----d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-~~v~ 314 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFP-----DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL-EFVS 314 (498)
T ss_pred hhhhhhhHHhHHHhhccccCc-----CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH-HHHH
Confidence 11111 111 00 00000 0000011134457888888888877666 57888999999999999854 3333
Q ss_pred --CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeecccccc--------ccccccCCCccccCCCC--CC--
Q 001955 790 --ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPEL--------KGWWRTDGSTTQTAEPP--FS-- 855 (991)
Q Consensus 790 --~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L--------~~~~~~~~~~~~~~~~~--l~-- 855 (991)
.+..+..|+.|+|.+ |.|....++.+..+.+|.+|.+..+|-. .+|-........-.|.+ +.
T Consensus 315 ~~~f~~ls~L~tL~L~~----N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~ 390 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYD----NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQ 390 (498)
T ss_pred HHhhhccccceeeeecC----CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcc
Confidence 477889999999999 8887777888888889999999876642 23433322222223321 11
Q ss_pred CCccceeecccCC-------------CCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCC
Q 001955 856 HPLQQTMMRTTNT-------------AEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKA 922 (991)
Q Consensus 856 ~~~~~l~~~~~~~-------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 922 (991)
.|++.+.+..... ....++.+.+..=..+..+..+|.. + -..-.+|++.+| .++.+|.. .+
T Consensus 391 ~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-i--P~d~telyl~gn-~~~~vp~~--~~ 464 (498)
T KOG4237|consen 391 IPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-I--PVDVTELYLDGN-AITSVPDE--LL 464 (498)
T ss_pred ccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-C--CchhHHHhcccc-hhcccCHH--HH
Confidence 2332221111110 1223344443322222234455442 1 123567777777 67777765 56
Q ss_pred CCCCeEeeecCC
Q 001955 923 TTLKTVGIYDCP 934 (991)
Q Consensus 923 ~~L~~L~l~~c~ 934 (991)
.+| .+++++++
T Consensus 465 ~~l-~~dls~n~ 475 (498)
T KOG4237|consen 465 RSL-LLDLSNNR 475 (498)
T ss_pred hhh-hcccccCc
Confidence 677 77887776
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=1.8e-14 Score=130.64 Aligned_cols=147 Identities=28% Similarity=0.388 Sum_probs=98.4
Q ss_pred hhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhc
Q 001955 541 LLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
+.++.+...|.++.+...- .+.-+..+.+|++|++++|+++++|.+++++++|+.|++.-|+ +..+|..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-------vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-------VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred ccchhhhhhhhcccCceee-------cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 3444555555555554332 1223466777777788777777777777777778887777777 6777777777
Q ss_pred ccCCCEEeCCCCCCC-ccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCC
Q 001955 621 LLNLQTLDLSCCDDL-VELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLR 696 (991)
Q Consensus 621 L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~ 696 (991)
++-|++|||.+|+.- ..+|..+..|..|+-|++++| ..+.+|+.++++++||.|.+..+......++++.++.|+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 777888877775533 236777777777777777776 556677777777777777776665555555555555554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=3.5e-14 Score=128.78 Aligned_cols=108 Identities=31% Similarity=0.430 Sum_probs=92.4
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
-++.+++.|.||+|.++.+|+.|..+.+|+.|++++|+ +.++|.+++.+++|+.|+++- +.+..+|.+++.++-|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 45677888999999999999999999999999999999 999999999999999999998 5688899999999999999
Q ss_pred eecccccc-CcCCcCCCCCCCCCcCCccccC
Q 001955 652 AIESCLSL-TDMPNGLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 652 ~l~~~~~~-~~lp~~l~~L~~L~~L~l~~~~ 681 (991)
|+..|+.. ..+|..+..|+.|+.|++..+.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 99887543 3477777777777777775543
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.1e-11 Score=147.02 Aligned_cols=94 Identities=23% Similarity=0.444 Sum_probs=58.1
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
+.|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|+|++|. +..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 356777777777777766543 467777777776 556666543 357777777754 456666553 467777776
Q ss_pred cccccCcCCcCCCCCCCCCcCCccc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
+| .+..+|..+. .+|+.|+++.
T Consensus 271 ~N-~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 271 HN-KISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CC-ccCccccccC--CCCcEEECCC
Confidence 65 4555665443 3566665543
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.3e-09 Score=120.27 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=173.0
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc-ccc---cceEEEEecCCCChHH
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK-THF---NLRMWVCVSDIFDVTT 237 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~ 237 (991)
.++.++||++++++|..++..... ......+.|+|++|+|||++++.+++..... ... -..+|+.+....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999874221 1234578999999999999999999742211 111 1356788777777888
Q ss_pred HHHHHHHHcc---CCCC-cccCHHHHHHHHHhHhC--CceeEEEeccccccC---hHHHHHHHHHh-cCCC--CCcEEEE
Q 001955 238 IVEKMIRSAT---NRES-EKLDLDQLQERLRGEID--GKRYLLVLDDVWNEN---RDKWLELEALL-MNGV--SGSKIVV 305 (991)
Q Consensus 238 ~~~~i~~~l~---~~~~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iiv 305 (991)
++..++.++. ...+ ...+.+++...+.+.+. +++++||||+++.-. ......+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999884 2211 12234555556666553 568999999997652 11111222110 0111 2234555
Q ss_pred ecCcHHHHHHhC-------CCCceecCCCChHHHHHHHHHHHccC-CCCCCChhHHHHHHHHHhhcCCchH-HHHHHHHH
Q 001955 306 TTRSERVARITS-------KLPFHALRGLPEDMSWSLFTRMAFEQ-GSEPKDSKLVQIGKDVVGKCAGVPL-AIRTIGRL 376 (991)
Q Consensus 306 TTR~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~~~~ 376 (991)
+|.......... ....+.+++++.++..+++..++... ....-.++..+...+++....|.|- |+.++-.+
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555443221111 12357899999999999998876411 1111223334455667777788884 43333221
Q ss_pred h--h---cC--CChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCC--CCceecHHHHHHHHH-H
Q 001955 377 L--Y---YN--NTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFP--KDYLIVKEQLVLLWM-A 446 (991)
Q Consensus 377 L--~---~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~w~-a 446 (991)
. . .. -+.+....+.+.. -.....-++..||.+.|..+..++..- ++..+....+...+- .
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 11 1223333222211 112234567899998887666654221 233455666655332 1
Q ss_pred cCCCcCCCCCCChHhhHHHHHHHHHhcccccccc
Q 001955 447 QGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAE 480 (991)
Q Consensus 447 ~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 480 (991)
...+.. .........+++..|...|++....
T Consensus 321 ~~~~~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 111111 1234466778899999999998653
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.1e-09 Score=117.17 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=116.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHH----h
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLR----G 265 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~----~ 265 (991)
..+++.|+|++|+||||+++.+++..... .+ ...|+ +....+..+++..+...++.... ..+...+...+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999853321 11 12233 33445777888889888865432 222233333333 2
Q ss_pred H-hCCceeEEEeccccccChHHHHHHHHHhcCC---CCCcEEEEecCcHHHHHHhC----------CCCceecCCCChHH
Q 001955 266 E-IDGKRYLLVLDDVWNENRDKWLELEALLMNG---VSGSKIVVTTRSERVARITS----------KLPFHALRGLPEDM 331 (991)
Q Consensus 266 ~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iivTTR~~~v~~~~~----------~~~~~~l~~L~~~~ 331 (991)
. ..+++.++|+||+|......++.+....... .....|++|... ....... ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 2578899999999988766777665433221 122244555543 2222211 12356799999999
Q ss_pred HHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 332 SWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 332 ~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988765433211111234678999999999999999998865
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=8.9e-13 Score=135.66 Aligned_cols=107 Identities=24% Similarity=0.379 Sum_probs=88.9
Q ss_pred cccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc-ccccccCcEEee
Q 001955 576 CLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAI 653 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l 653 (991)
.-..++|..|.|+.+|+ .|+.+++||.|||++|.+..--|.+|..|..|..|-+.+++.+..+|+. +++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 35678999999999975 7999999999999999955566889999999999999888889999976 789999999998
Q ss_pred ccccccCcCC-cCCCCCCCCCcCCccccCCc
Q 001955 654 ESCLSLTDMP-NGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 654 ~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~ 683 (991)
.-| .+..++ ..+..|++|..|.++.+...
T Consensus 148 Nan-~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 148 NAN-HINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred Chh-hhcchhHHHHHHhhhcchhcccchhhh
Confidence 777 444444 45778889999988877554
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=4.5e-10 Score=123.05 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=145.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+|+|++..++.+..++...... ......+.|+|++|+||||+|+.+++... ..+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHHH
Confidence 45999999999998877642111 12456788999999999999999998422 211 112111 111111122222
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcC-------------------CCCCcEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMN-------------------GVSGSKIV 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~ii 304 (991)
..+ ++.-+|++|++........+.+...+.. -.+.+-|.
T Consensus 98 ~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 98 TNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred Hhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 222 2234555666543321111111111110 01234556
Q ss_pred EecCcHHHHHHh--CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCC
Q 001955 305 VTTRSERVARIT--SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNT 382 (991)
Q Consensus 305 vTTR~~~v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~ 382 (991)
.||+...+.... .....+.+++++.++..+++.+.+...+... -.+.+..|++.|+|.|-.+..+...+.
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~---- 227 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRVR---- 227 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH----
Confidence 666643332221 1123678999999999999998876543322 235678999999999955544444321
Q ss_pred hHHHHHHhhhhccCCCCC-ccchhhhhhhhccCCChhhHHHHh-HhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChH
Q 001955 383 ETYWLHFRDDELSKVPQE-ESDILPKLKLSYDHLPSPLKQCFA-YCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPE 460 (991)
Q Consensus 383 ~~~w~~~~~~~~~~~~~~-~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 460 (991)
.|...... ..+... -......+...|..|+...+..+. ....|+.+ .+..+.+.... ....
T Consensus 228 --~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~ 290 (328)
T PRK00080 228 --DFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEER 290 (328)
T ss_pred --HHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCc
Confidence 22211100 011000 012334566778899988887775 66777765 46665554432 2233
Q ss_pred hhHHHHHH-HHHhcccccccc
Q 001955 461 DVGHEYFM-SLLSRSFFQDAE 480 (991)
Q Consensus 461 ~~~~~~l~-~L~~~sll~~~~ 480 (991)
+.+++.++ .|++.+|++...
T Consensus 291 ~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred chHHHHhhHHHHHcCCcccCC
Confidence 44555666 899999997544
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.14 E-value=3.6e-10 Score=118.49 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=101.8
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH----
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK---- 241 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~---- 241 (991)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+. .+..-..++|+..........+..-
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 689999999999998753 3458999999999999999999983 2221123445544333322211111
Q ss_pred ---------HHHHccCCCC----------cccCHHHHHHHHHhHhCCceeEEEeccccccC------hHHHHHHHHHhcC
Q 001955 242 ---------MIRSATNRES----------EKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN------RDKWLELEALLMN 296 (991)
Q Consensus 242 ---------i~~~l~~~~~----------~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~ 296 (991)
+...+..... .......+.+.+.+. +++++||+||+.... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK--GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC--HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc--CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 1111111110 112223333333321 345999999997654 1222334444433
Q ss_pred ---CCCCcEEEEecCcHHHHHH--------hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC
Q 001955 297 ---GVSGSKIVVTTRSERVARI--------TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG 365 (991)
Q Consensus 297 ---~~~gs~iivTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G 365 (991)
..+.+.| +++....+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|+..+||
T Consensus 151 ~~~~~~~~~v-~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 151 LLSQQNVSIV-ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp ----TTEEEE-EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred ccccCCceEE-EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCC
Confidence 3334444 44444444433 1223358899999999999999865433 111 1123445899999999
Q ss_pred chHHHHH
Q 001955 366 VPLAIRT 372 (991)
Q Consensus 366 lPLal~~ 372 (991)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9988764
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=2.2e-09 Score=117.09 Aligned_cols=275 Identities=13% Similarity=0.090 Sum_probs=143.3
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
+|||++..++.+..++...... ......+.++|++|+|||+||+.+++... ..+ ..+..+....... +...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHHH
Confidence 5899999999998888642211 12345688999999999999999998422 122 1111111111111 112222
Q ss_pred HccCCC------CcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh--
Q 001955 245 SATNRE------SEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARIT-- 316 (991)
Q Consensus 245 ~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-- 316 (991)
.+.... .+... ......+...+.+.+..+|+|+..... .+... ..+.+-|..||+...+....
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~-----~~~~~---~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR-----SVRLD---LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc-----ceeec---CCCeEEEEecCCccccCHHHHh
Confidence 221100 00000 111222333333334444444432210 00001 11345566677754332221
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhhccC
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDELSK 396 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~~~~ 396 (991)
.....+.+++++.++..+++.+.+...+... -.+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1123678999999999999998876433211 23566889999999996655444432 21110000000
Q ss_pred CCCC-ccchhhhhhhhccCCChhhHHHHh-HhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHH-HHHhc
Q 001955 397 VPQE-ESDILPKLKLSYDHLPSPLKQCFA-YCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFM-SLLSR 473 (991)
Q Consensus 397 ~~~~-~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~ 473 (991)
+... -......+...|..++++.+..+. .++.++.+ .+..+.+.... ......++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHHHHc
Confidence 1000 011222356678899998887666 55667544 45554444332 223345667778 69999
Q ss_pred ccccccc
Q 001955 474 SFFQDAE 480 (991)
Q Consensus 474 sll~~~~ 480 (991)
+|+....
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997443
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=1.2e-08 Score=116.48 Aligned_cols=291 Identities=18% Similarity=0.185 Sum_probs=185.7
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC-CCChHHHHHHHHHHccCCCCc
Q 001955 174 NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD-IFDVTTIVEKMIRSATNRESE 252 (991)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 252 (991)
.++++.|.. ..+.+.+.|..++|.||||++.+... +. ..=..+.|.++.. +.++..+...++..+..-.+.
T Consensus 25 ~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 445555554 23789999999999999999998874 11 1123588999865 557788888888777632221
Q ss_pred -------------ccCHHHHHHHHHhHhC--CceeEEEeccccccChHHH-HHHHHHhcCCCCCcEEEEecCcHHHH---
Q 001955 253 -------------KLDLDQLQERLRGEID--GKRYLLVLDDVWNENRDKW-LELEALLMNGVSGSKIVVTTRSERVA--- 313 (991)
Q Consensus 253 -------------~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~-~~l~~~l~~~~~gs~iivTTR~~~v~--- 313 (991)
..+...+...+...+. .++..+||||-.-...... ..+...+....++-.+|||||+..-.
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2233445555555444 4689999999865432233 33555666677889999999986422
Q ss_pred HHhCCCCcee----cCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHH
Q 001955 314 RITSKLPFHA----LRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHF 389 (991)
Q Consensus 314 ~~~~~~~~~~----l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~ 389 (991)
..--.....+ .-.++.+|+.++|....... -+ ..-++.+.+...|-+-|+..++=.++.+.+.+.-...
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 1111111222 23478999999998865221 11 2335889999999999999999888844433221111
Q ss_pred hhhhccCCCCCccchhh-hhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHH
Q 001955 390 RDDELSKVPQEESDILP-KLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFM 468 (991)
Q Consensus 390 ~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~ 468 (991)
+....+.+.. ...--++.||+++|..++-||+++.= . +.|+.. -+-++-+...++
T Consensus 250 -------LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~-------------Ltg~~ng~amLe 305 (894)
T COG2909 250 -------LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNA-------------LTGEENGQAMLE 305 (894)
T ss_pred -------ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHH-------------HhcCCcHHHHHH
Confidence 1111111222 23446799999999999999998641 1 223332 112345778899
Q ss_pred HHHhcccccccccCCCCCEEEEEechhHHHHHHHhhcc
Q 001955 469 SLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGT 506 (991)
Q Consensus 469 ~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~ 506 (991)
+|-+++|+-..-.+ .+ .+|+.|.++.||.+.--..
T Consensus 306 ~L~~~gLFl~~Ldd-~~--~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDD-EG--QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecC-CC--ceeehhHHHHHHHHhhhcc
Confidence 99999998754332 12 4799999999998765443
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=3.3e-11 Score=132.93 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=56.2
Q ss_pred hhhccCCcccEEEccCCCcc-----ccCccccCCCCccEEEccCCCCc------cccchhhhcccCCCEEeCCCCCCCcc
Q 001955 569 KIVSSFKCLRTLNLSNSEIE-----TVPSLIGKLKHLRYFNLSHNADI------KSLPDSVSRLLNLQTLDLSCCDDLVE 637 (991)
Q Consensus 569 ~~~~~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~------~~lP~~i~~L~~L~~L~L~~~~~~~~ 637 (991)
..+..+.+|++|+++++.++ .++..+...+.|++|+++++... ..++..+.++++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44556666888888887773 34555666777888888777632 12344566677777777777665444
Q ss_pred cccccccccc---CcEEeeccc
Q 001955 638 LPRDIGKMVS---LRHLAIESC 656 (991)
Q Consensus 638 lp~~i~~L~~---L~~L~l~~~ 656 (991)
.+..+..+.+ |++|++++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC
Confidence 5555555444 777777766
No 33
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=4e-09 Score=103.80 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=89.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccccc----ccceEEEEecCCCChH---HHHHHHHHHccCCCCcccCHHHHHHHHH
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTH----FNLRMWVCVSDIFDVT---TIVEKMIRSATNRESEKLDLDQLQERLR 264 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 264 (991)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 57999999999999999999975333332 4456677665443322 33333333332111 11111111111
Q ss_pred hHhCCceeEEEeccccccChH-------HHHHHH-HHhcC-CCCCcEEEEecCcHHH---HHHhCCCCceecCCCChHHH
Q 001955 265 GEIDGKRYLLVLDDVWNENRD-------KWLELE-ALLMN-GVSGSKIVVTTRSERV---ARITSKLPFHALRGLPEDMS 332 (991)
Q Consensus 265 ~~L~~kr~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~ 332 (991)
-+.++++||+|++++.... .+..+. ..+.. ..++++++||+|.... .........+++.+|++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2478999999999765321 133333 33333 2578999999998665 33344456899999999999
Q ss_pred HHHHHHHH
Q 001955 333 WSLFTRMA 340 (991)
Q Consensus 333 ~~Lf~~~a 340 (991)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997753
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=5.3e-08 Score=112.07 Aligned_cols=302 Identities=12% Similarity=0.101 Sum_probs=166.0
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc---ccccc--ceEEEEecCCCChHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV---KTHFN--LRMWVCVSDIFDVTT 237 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~ 237 (991)
++.+.|||+|+++|...|...-.. .....++.|+|++|.|||++++.|.+.... ..... .+++|.+....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 466899999999999988753221 123467899999999999999999864211 11222 356777777778888
Q ss_pred HHHHHHHHccCCCCc-ccCHHHHHHHHHhHhC---CceeEEEeccccccChHHHHHHHHHhcC-CCCCcEEEE--ecCcH
Q 001955 238 IVEKMIRSATNRESE-KLDLDQLQERLRGEID---GKRYLLVLDDVWNENRDKWLELEALLMN-GVSGSKIVV--TTRSE 310 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~L~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TTR~~ 310 (991)
++..|..++.+..+. .....+....+...+. +...+||||+++.-....-+.+...+.. ...+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999888544322 2233344455554442 2245899999975421111223323322 124556554 34322
Q ss_pred H--------HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCC-
Q 001955 311 R--------VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNN- 381 (991)
Q Consensus 311 ~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~- 381 (991)
. +...+. ...+.++|++.++-.+++..++........+..++-+|+.++..-|-.-.||.++-.+.....
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 212222 124668999999999999998764322223344555555555555556677766655443211
Q ss_pred ---ChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccC-C--CCceecHHHHHHHH--HHc--C-CC
Q 001955 382 ---TETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALF-P--KDYLIVKEQLVLLW--MAQ--G-FL 450 (991)
Q Consensus 382 ---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f-p--~~~~i~~~~li~~w--~a~--g-~i 450 (991)
+.++-..+.... -...+.-....||.+.|-.+..+... - ....++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 111111111110 01123345578999877655533322 1 12235554444332 222 1 11
Q ss_pred cCCCCCCChHhhHHHHHHHHHhcccccccc
Q 001955 451 GLSIDNQCPEDVGHEYFMSLLSRSFFQDAE 480 (991)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 480 (991)
... ...+ ....++.+|...|+|...+
T Consensus 1062 Gv~---plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1062 GMC---SNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred CCC---CcHH-HHHHHHHHHHhcCeEEecC
Confidence 111 1222 5667788888888887544
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=4.2e-11 Score=132.09 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=56.2
Q ss_pred EEEccCCCcc--ccCccccCCCCccEEEccCCCCc----cccchhhhcccCCCEEeCCCCCCC------ccccccccccc
Q 001955 579 TLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADI----KSLPDSVSRLLNLQTLDLSCCDDL------VELPRDIGKMV 646 (991)
Q Consensus 579 ~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~----~~lP~~i~~L~~L~~L~L~~~~~~------~~lp~~i~~L~ 646 (991)
.|+|.++.++ ..+..+..+.+|++|++++|.+. ..++..+...++|+.|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667666665 34455667778999999998832 346667778888999999886432 22345566777
Q ss_pred cCcEEeecccccc
Q 001955 647 SLRHLAIESCLSL 659 (991)
Q Consensus 647 ~L~~L~l~~~~~~ 659 (991)
+|+.|++++|...
T Consensus 82 ~L~~L~l~~~~~~ 94 (319)
T cd00116 82 GLQELDLSDNALG 94 (319)
T ss_pred ceeEEEccCCCCC
Confidence 8888888877443
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=1.2e-07 Score=115.46 Aligned_cols=316 Identities=13% Similarity=0.139 Sum_probs=182.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEE---EecCCCC---hHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWV---CVSDIFD---VTTI 238 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv---~~s~~~~---~~~~ 238 (991)
.++||+.+++.|...+...... ...++.+.|.+|||||+|+++|.. .+.+.+...+-- ....... ..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g---~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKG---RGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCC---CeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 3789999999999999866542 567999999999999999999997 333332111111 1111111 2233
Q ss_pred HHHHHHHccC-------------------CCC----------------------cccCHH-----HHHHHHHhHh-CCce
Q 001955 239 VEKMIRSATN-------------------RES----------------------EKLDLD-----QLQERLRGEI-DGKR 271 (991)
Q Consensus 239 ~~~i~~~l~~-------------------~~~----------------------~~~~~~-----~l~~~l~~~L-~~kr 271 (991)
+++++.++.. ... .....+ .....+.... +.|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 3444333310 000 000001 1122222333 3569
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCC----CCcEEEEec--CcH--HHHHHhCCCCceecCCCChHHHHHHHHHHHccC
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGV----SGSKIVVTT--RSE--RVARITSKLPFHALRGLPEDMSWSLFTRMAFEQ 343 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTT--R~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 343 (991)
.++|+||+...|....+-+........ ....|..+. +.. .+.........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997776555544443332221 111233333 322 111222233578999999999999998876432
Q ss_pred CCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCC------ChHHHHHHhhhhccCCCCCccchhhhhhhhccCCCh
Q 001955 344 GSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNN------TETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPS 417 (991)
Q Consensus 344 ~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 417 (991)
. ....+..+.|+++..|.|+.+.-+-..+.... ....|..-. .... .+...+.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~-~~i~-~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI-ASLG-ILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH-HhcC-CchhhHHHHHHHHHHHhcCCH
Confidence 2 12335679999999999999999998887642 222332111 0011 111112355568889999999
Q ss_pred hhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHHHHHhcccccccccCCCCCE-EE--E-Eec
Q 001955 418 PLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNI-IR--C-KIH 493 (991)
Q Consensus 418 ~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~-~~--~-~~H 493 (991)
..|..+...||+... |+.+.|...|- +.....+...++.|....++...+....+.. .. | ..|
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 999999999999644 56666666552 2345666666666666555542221111111 11 1 468
Q ss_pred hhHHHHHHHhhc
Q 001955 494 DLMHDLAESVAG 505 (991)
Q Consensus 494 dlv~~~a~~~~~ 505 (991)
|.+++.|.....
T Consensus 376 ~~vqqaaY~~i~ 387 (849)
T COG3899 376 DRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHhccCc
Confidence 888888765443
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.2e-08 Score=103.77 Aligned_cols=178 Identities=20% Similarity=0.258 Sum_probs=109.2
Q ss_pred cccCcCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 158 HSFVHKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 158 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
..++...+++|.++.+.++++ ...+.-...||+||+||||||+.+... ....| ..++...+-.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvk 87 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVK 87 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHH
Confidence 344556677887777776655 236677889999999999999999973 33333 33443333333
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE--ecCcHHH---
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV--TTRSERV--- 312 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v--- 312 (991)
-++++++... +....+++.+|++|.|..-+...-+ ..||.-..|.-|+| ||-++.-
T Consensus 88 dlr~i~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD---~lLp~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 88 DLREIIEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQD---ALLPHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred HHHHHHHHHH----------------HHHhcCCceEEEEehhhhcChhhhh---hhhhhhcCCeEEEEeccCCCCCeeec
Confidence 2333332210 1223489999999999775543333 34555567877777 6665432
Q ss_pred HHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCC--ChhH-HHHHHHHHhhcCCchHHH
Q 001955 313 ARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPK--DSKL-VQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 313 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~--~~~~-~~~~~~I~~~c~GlPLal 370 (991)
....+...++++++|+.++-.+++.+.+......-. ...+ .++-..++..++|---++
T Consensus 149 ~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 149 PALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 122344568999999999999999884433222111 1111 235567888888876443
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1e-07 Score=98.33 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=97.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
.+.+.|+|++|+|||+||+++++. .......+.|+++... .... .. +.+.+ .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~-----------------~~----~~~~~-~~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFS-----------------PA----VLENL-EQ 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhh-----------------HH----HHhhc-cc
Confidence 357899999999999999999984 2222335567765311 0000 01 11112 13
Q ss_pred eeEEEeccccccC-hHHHHH-HHHHhcCC-CCCcEEEE-ecCc---------HHHHHHhCCCCceecCCCChHHHHHHHH
Q 001955 271 RYLLVLDDVWNEN-RDKWLE-LEALLMNG-VSGSKIVV-TTRS---------ERVARITSKLPFHALRGLPEDMSWSLFT 337 (991)
Q Consensus 271 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (991)
.-+|||||+|... ...|.. +...+... ..|..+|| |+.. +++...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998742 245553 33333322 23556655 4443 3555555666688999999999999999
Q ss_pred HHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 338 RMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
+.++..+-.. -.++..-|++++.|..-++..+-..|
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9987554322 23566889999988876665554443
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=1.1e-07 Score=89.22 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=80.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc---ccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK---THFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE 266 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 266 (991)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...++..++.......+.+++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999742110 002456799998888999999999999986655555677777778777
Q ss_pred hCCce-eEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCc
Q 001955 267 IDGKR-YLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 267 L~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~ 309 (991)
+...+ .+||+|+++.- +...++.+..... ..+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999776 5444455544333 566677776654
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=1.5e-09 Score=117.41 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=34.3
Q ss_pred CcceEEEeeeCCCccCcccccccccCceeeccccccccCC----CCCCCCccceeecccc
Q 001955 750 NLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP----ELDQLPSLKRLRLFKL 805 (991)
Q Consensus 750 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp----~l~~l~~L~~L~l~~~ 805 (991)
.|..|+++.+....+|-.+..|..|+.|-|.+|.. +..| .-|...-.|+|+..-|
T Consensus 212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeecccCceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 35566666666677777777888888888877753 3333 2333344566666554
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.60 E-value=1.3e-06 Score=98.69 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=103.9
Q ss_pred ceeecchhHHH---HHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 165 DIIGRDGDKNE---IIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 165 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
++||++..+.. +..++... ....+.++|++|+||||+|+.+++. .... |+.++.......-+++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHH
Confidence 47777766544 66666532 4457888999999999999999974 2222 2333222111111122
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE--ecCcHHHH---HH
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV--TTRSERVA---RI 315 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v~---~~ 315 (991)
++ +..... ..+++.+|++|+++.-.....+.+...+.. |..+++ ||.+.... ..
T Consensus 80 ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 22 111111 135788999999987765556666655543 444444 34443211 11
Q ss_pred hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 316 TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
......+.+.+++.++.++++.+.+....... ..-..+..+.|++.|+|.+..+.-+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22235788999999999999988653311100 011235568899999999976655443
No 42
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=3e-07 Score=97.52 Aligned_cols=293 Identities=17% Similarity=0.160 Sum_probs=186.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
..+-+.++|.|||||||++-.+.. ++..| +.+.++......+...+.......++-.... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 568899999999999999988876 55667 5677788888778888777777767643322 1223344555666
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhCCCCceecCCCChH-HHHHHHHHHHccCCCC-
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARITSKLPFHALRGLPED-MSWSLFTRMAFEQGSE- 346 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~~~- 346 (991)
++|.++|+||..+. ...-..+...+..+.+.-.|+.|+|..... .....+.+++|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998543 223333444455555666788888865322 33346677888764 7899988776443221
Q ss_pred CCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhhccCCCCC-------ccchhhhhhhhccCCChhh
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQE-------ESDILPKLKLSYDHLPSPL 419 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~~sy~~L~~~~ 419 (991)
.-.........+|.++.+|.|++|...++..+.-. ..+-...+.+....+.+. .....+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 01122346678999999999999999999887654 222222222222111111 1246778999999999999
Q ss_pred HHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHHHHHhcccccccccCCCCCEEEEEechhHHHH
Q 001955 420 KQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDL 499 (991)
Q Consensus 420 k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~ 499 (991)
+--|.-++.|...|... ...|.+.|-.. ..+.-....-+..+++++++...... +. ..|+.-+.++.|
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~Y 309 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRRY 309 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHHH
Confidence 99999999998877554 33455554321 01112233345677888887543321 11 135555666777
Q ss_pred HHHhhc
Q 001955 500 AESVAG 505 (991)
Q Consensus 500 a~~~~~ 505 (991)
+..+-.
T Consensus 310 alaeL~ 315 (414)
T COG3903 310 ALAELH 315 (414)
T ss_pred HHHHHH
Confidence 665543
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.55 E-value=1.1e-06 Score=91.37 Aligned_cols=171 Identities=11% Similarity=0.103 Sum_probs=101.3
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN 248 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 248 (991)
.+..++.+..++.. ...+.+.|+|++|+|||++|+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 34466666666542 145689999999999999999999742 22233455665533211 00
Q ss_pred CCCcccCHHHHHHHHHhHhCCceeEEEeccccccChH-HH-HHHHHHhcC-CCCCcEEEEecCcHH---------HHHHh
Q 001955 249 RESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRD-KW-LELEALLMN-GVSGSKIVVTTRSER---------VARIT 316 (991)
Q Consensus 249 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~ 316 (991)
.... ..+.+ .-+|||||++..... .| ..+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~~~~----~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PEVL----EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HHHH----hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0111 11222 348999999765322 33 334444332 123457888887432 22223
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHH
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRL 376 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~ 376 (991)
.....+++++++.++...++...+-..+... -.+..+.|++.+.|.|..+.-+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3345788999999999999887653322211 1255677888899999887766543
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=7.8e-08 Score=92.84 Aligned_cols=129 Identities=26% Similarity=0.290 Sum_probs=51.3
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhh-hc
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSV-SR 620 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i-~~ 620 (991)
.+..++|.|.+.++.... +...-..+.+|++|+|++|.|+.++ .+..+++|+.|++++|. +..+++.+ ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccc-------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHh
Confidence 344567777777765432 1222125778999999999999885 57889999999999998 77787655 46
Q ss_pred ccCCCEEeCCCCCCCcccc--ccccccccCcEEeeccccccCcCCc----CCCCCCCCCcCCccccC
Q 001955 621 LLNLQTLDLSCCDDLVELP--RDIGKMVSLRHLAIESCLSLTDMPN----GLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~l~~L~~L~~L~l~~~~ 681 (991)
+++|+.|++++|. +..+- ..+..+++|++|++.+|+.. ..+. .+..+++|+.|+...+.
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 8999999999854 44432 34677899999999988543 3332 25677888888875443
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=7.2e-08 Score=109.53 Aligned_cols=107 Identities=36% Similarity=0.580 Sum_probs=93.0
Q ss_pred ccCCcccEEEccCCCccccCccccCCC-CccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLK-HLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
..++.+..|++.++.++.+|.....+. +|++|++++|. +..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 456889999999999999998888885 99999999999 8999888999999999999995 57889988889999999
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCCccccC
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~ 681 (991)
|++++| .+..+|..++.+..|++|.+..+.
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhhhcCCc
Confidence 999998 778888877777778888876553
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=1.4e-09 Score=113.57 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=34.8
Q ss_pred cccEEEccCCCcc---ccCccccCCCCccEEEccCCCCcccc--chhhhcccCCCEEeCCCCCCCcccc--ccccccccC
Q 001955 576 CLRTLNLSNSEIE---TVPSLIGKLKHLRYFNLSHNADIKSL--PDSVSRLLNLQTLDLSCCDDLVELP--RDIGKMVSL 648 (991)
Q Consensus 576 ~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~~~~~~~l--P~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L 648 (991)
.|+.|.+.++.-. .+-..-.++++++.|++.+|..+.+- -..-..+.+|++|+|..|..++..- .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3555666655322 12222344555555555555433211 1111234555555555554443321 112234445
Q ss_pred cEEeeccc
Q 001955 649 RHLAIESC 656 (991)
Q Consensus 649 ~~L~l~~~ 656 (991)
.+|+++.|
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555444
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.51 E-value=2.1e-07 Score=93.39 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=32.6
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCc
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDE 215 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 215 (991)
.||||+++++++.+.+.... ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999995222 2367999999999999999999998843
No 48
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=5.5e-07 Score=83.67 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=77.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
+++.|.|+.|+||||++++++.+.. ....++|+++.+....... +.+ +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999997422 2345667766543221100 000 2233333333478
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh------CCCCceecCCCChHHH
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARIT------SKLPFHALRGLPEDMS 332 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~------~~~~~~~l~~L~~~~~ 332 (991)
.+|+||++... ..|......+.+..+..+|++|+.+......- +....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999765 56777666666655678999999987665331 1223678999988763
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=6.6e-09 Score=112.53 Aligned_cols=170 Identities=26% Similarity=0.375 Sum_probs=128.1
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
.+..-...||+.|++..+|..++.+..|..|.|+.|. +..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEE
Confidence 3445567788889999999888888899999998888 888999999999999999998 45788898888887 88888
Q ss_pred eccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 653 IESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
+++| +++.+|..++.+..|..|+.+.|.......++..+..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s-------------------------------------- 190 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS-------------------------------------- 190 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH--------------------------------------
Confidence 8877 7888999888888888888766554433333333332
Q ss_pred CccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccc
Q 001955 733 TVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFK 804 (991)
Q Consensus 733 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~ 804 (991)
|+.|.+..+....+|.-+..| .|..|+++.|+ ...+| .+..|..|++|.|.+
T Consensus 191 ------------------lr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 191 ------------------LRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ------------------HHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchhhhhhhhheeeeecc
Confidence 223333334445566666633 58899999874 55666 789999999999987
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=2e-07 Score=110.70 Aligned_cols=105 Identities=28% Similarity=0.385 Sum_probs=87.5
Q ss_pred cccEEEccCCCcc-ccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 576 CLRTLNLSNSEIE-TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 576 ~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|..++++++|++|+|++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999887 678889999999999999999778999999999999999999988777899999999999999999
Q ss_pred cccccCcCCcCCCCC-CCCCcCCcccc
Q 001955 655 SCLSLTDMPNGLGQL-TNLRTLPLFMV 680 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L-~~L~~L~l~~~ 680 (991)
+|.....+|..++.+ .++..+++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 998777888877653 34555555443
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=6.2e-06 Score=91.45 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=111.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+...+.... -...+.++|++|+||||+|+.+++...-..... ..+...-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 358999999999988887531 345678999999999999999987421110000 00000000111111
Q ss_pred HHccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH
Q 001955 244 RSATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 313 (991)
..... ........+++.+.+... ..+++-++|+|+++......+..+...+.......++|++|.+.. +.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 11000 000011222222211111 124556999999988776678788888877666777777775532 32
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
.. .+....+++.+++.++..+.+.+.+...+... -.+.+..|++.++|.|-.+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 22 12234789999999999988887664433211 1245678999999988543
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.2e-06 Score=91.18 Aligned_cols=178 Identities=14% Similarity=0.195 Sum_probs=115.7
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC----ccccccccceEEEEe-cCCCChHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND----EDVKTHFNLRMWVCV-SDIFDVTTIV 239 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~F~~~~wv~~-s~~~~~~~~~ 239 (991)
+++|.+..++.+..++..+. -.....++|+.|+||||+|+.+++. .....|.|...|... +......+ +
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 47898888999999886532 3457789999999999999888863 122345565555432 22222222 1
Q ss_pred HHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH--HhC
Q 001955 240 EKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVAR--ITS 317 (991)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~--~~~ 317 (991)
+++.+.+.. .-..+++-++|+|+++.-+...+..+...+....+++.+|++|.+.+... ...
T Consensus 79 r~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 222222211 01224566777888877677889999999998888999999887654221 112
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
....+.+.++++++....+.+...+ . . .+.++.++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~----~-~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND----I-K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC----C-C---HHHHHHHHHHcCCCHHHHHH
Confidence 2347889999999998877654311 1 1 23357789999998875543
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.47 E-value=1.2e-05 Score=93.01 Aligned_cols=247 Identities=14% Similarity=0.155 Sum_probs=138.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.++.++.+.+|+..... ....+.+.|+|++|+||||+|+.++++.. |+ .+-++.+...+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 4589999999999999875322 11367899999999999999999998531 22 2334444433222 222332
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh----HHHHHHHHHhcCCCCCcEEEEecCcHH-HH--HHh
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR----DKWLELEALLMNGVSGSKIVVTTRSER-VA--RIT 316 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTTR~~~-v~--~~~ 316 (991)
....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+.. .. ..-
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221100 00113677999999976422 335556665553 3345666664421 11 111
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCC---ChHHHHHHhhhh
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNN---TETYWLHFRDDE 393 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~---~~~~w~~~~~~~ 393 (991)
.....+.+.+++.++....+.+.+...+.... .++...|++.++|..-.+......+.... +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 22346889999999998888887655443221 35678899999998766654444333221 1222211111
Q ss_pred ccCCCCCccchhhhhhhhcc-CCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcC
Q 001955 394 LSKVPQEESDILPKLKLSYD-HLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGL 452 (991)
Q Consensus 394 ~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 452 (991)
.+....++.++..-+. .-+......+.. ..++.+ .+-.|+.+.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1122346666665554 222233332222 122333 4667999998764
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.44 E-value=4.5e-06 Score=92.64 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=110.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCCh-HHHHH-
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDV-TTIVE- 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~- 240 (991)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..++++++...+. .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999998888643 334578999999999999999887421 11222 2344444321100 00000
Q ss_pred --HHHHHccCC-CCcccCHHHHHHHHHh---Hh--CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-
Q 001955 241 --KMIRSATNR-ESEKLDLDQLQERLRG---EI--DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER- 311 (991)
Q Consensus 241 --~i~~~l~~~-~~~~~~~~~l~~~l~~---~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~- 311 (991)
.....++.. .......+.....++. .. .+.+-+||+||+..........+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 0000111222222221 11 23455899999976654455556666655555677888775432
Q ss_pred HHHHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 312 VARIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 312 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
+.... .....+.+.+++.++..+++.+.+...+... -.+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22211 2223678899999999989888765443221 135668889999887655543
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-05 Score=88.35 Aligned_cols=207 Identities=17% Similarity=0.186 Sum_probs=130.6
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~ 240 (991)
++.+.+|+.+++++...|...-.+ ....-+.|+|.+|+|||+.++.|.+. +.... ..+++|++....+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 344899999999999888754332 12233899999999999999999984 33332 1278999999999999999
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhC--CceeEEEeccccccChHHHHHHHHHhcCCC-CCcEE--EEecCcHHHHHH
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEID--GKRYLLVLDDVWNENRDKWLELEALLMNGV-SGSKI--VVTTRSERVARI 315 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTTR~~~v~~~ 315 (991)
+++.+++..........+..+.+.+.+. ++.+++|||+++.-....-+.+...+.... ..++| |..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997544445556667777776665 578999999996532111133333333332 24443 334444333222
Q ss_pred --------hCCCCceecCCCChHHHHHHHHHHHcc---CCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 316 --------TSKLPFHALRGLPEDMSWSLFTRMAFE---QGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 316 --------~~~~~~~~l~~L~~~~~~~Lf~~~a~~---~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
.+.. .+..+|-+.++-...+..++-. .+. ..+..++-+|...++..|-.-.|+.++-.
T Consensus 172 ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 172 LDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 2222 3668889999999988877532 222 22233434444444444444556555533
No 56
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.9e-06 Score=82.72 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred eecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 167 IGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888653 345789999999999999999998432 112345666655433322221111000
Q ss_pred cCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC------CCCcEEEEecCcH
Q 001955 247 TNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG------VSGSKIVVTTRSE 310 (991)
Q Consensus 247 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTTR~~ 310 (991)
............++.++|+||++.........+...+... ..+..||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223356789999999864222333343333332 3577888888864
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.1e-06 Score=100.28 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=113.8
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.+.+.. .+..-...-+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 58999988888888887532 3456799999999999999999874221122222222221110 00000000000
Q ss_pred HccCCCCcccCHHH---HHHHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHHHHh-CC
Q 001955 245 SATNRESEKLDLDQ---LQERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVARIT-SK 318 (991)
Q Consensus 245 ~l~~~~~~~~~~~~---l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~~-~~ 318 (991)
.+.. ......+. +...+.. -..+++-++|+|+++......+..+...+......+.+|++|.. ..+.... ..
T Consensus 89 el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000 01112222 2222221 12356678999999887777788888888776556666666543 3332222 22
Q ss_pred CCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 319 LPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
...+++.+++.++..+.+.+.+...+... -.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 34789999999999999998775544322 2356688999999988544
No 58
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=9.9e-06 Score=87.01 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=101.9
Q ss_pred cCcCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHH
Q 001955 160 FVHKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 160 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 239 (991)
+.+.++|+||+.+..++...|...+.. ..+++.|+|++|+|||||++.+..... + ...+++. .+..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~---~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp---rg~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTA---HPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV---RGTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCC---CceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC---CCHHHHH
Confidence 345678999999999999998754432 456999999999999999999996422 1 1223322 2779999
Q ss_pred HHHHHHccCCCCcc--cCHHHHHHHHHhHh-C-CceeEEEeccccccC-hHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 240 EKMIRSATNRESEK--LDLDQLQERLRGEI-D-GKRYLLVLDDVWNEN-RDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 240 ~~i~~~l~~~~~~~--~~~~~l~~~l~~~L-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+.++.+++...... .-.+.+.+.+.+.- . +++.+||+-=-...+ ...+.+.. .|.....-|.|++----+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 99999999632221 11233344333322 2 566666653221111 11222221 2333345677777554443322
Q ss_pred Hh---CCCCceecCCCChHHHHHHHHHH
Q 001955 315 IT---SKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 315 ~~---~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
.. ..-..|.+++++.++|.++-.+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 21 12247889999999998876654
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.42 E-value=3.8e-06 Score=82.78 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=94.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
++|||.+.-++.+.-++..... ..+...-+.+||++|+||||||+.+++. ....|. +.+... .+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hh---------
Confidence 4599988887776555442111 0235778999999999999999999983 333332 222111 10
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC--------CC-----------CcEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG--------VS-----------GSKIV 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~ii 304 (991)
...++...+.. + +++-+|++|.+..-+...-+.+...+.++ ++ =+-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11222222222 2 34567888999876554444455554432 11 12344
Q ss_pred EecCcHHHHHHhCCCC--ceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 305 VTTRSERVARITSKLP--FHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 305 vTTR~~~v~~~~~~~~--~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
-|||..-+......-- ..+++..+.+|-.+...+.+..-+- +--.+.+.+|+++|.|-|=-+.-+-+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 5777644333332221 4578999999999998876644332 22347789999999999964443333
No 60
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=8.3e-08 Score=92.66 Aligned_cols=105 Identities=30% Similarity=0.419 Sum_probs=37.9
Q ss_pred ccCCcccEEEccCCCccccCcccc-CCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccc-cccccCc
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIG-KLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDI-GKMVSLR 649 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~ 649 (991)
.++..++.|+|++|.|+.+. .++ .+.+|+.|+|++|. +..++. +..+++|++|++++| .+..++..+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 45667899999999999874 465 68899999999999 888864 889999999999995 567776555 4689999
Q ss_pred EEeeccccccCcCC--cCCCCCCCCCcCCccccC
Q 001955 650 HLAIESCLSLTDMP--NGLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 650 ~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~ 681 (991)
+|++++| .+..+- ..++.+++|+.|++.++.
T Consensus 92 ~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 9999988 444432 235567777777776554
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=3e-06 Score=87.21 Aligned_cols=179 Identities=20% Similarity=0.281 Sum_probs=109.8
Q ss_pred ccCcCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 159 SFVHKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 159 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
.++...+++|.+.-+..+++ ...+.-+.+||++|+||||||+.+.+..+... ..||..|....-..-
T Consensus 139 dyvGQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~d 205 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTND 205 (554)
T ss_pred HhcchhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHH
Confidence 34445566666554444433 23667788999999999999999998543333 456777665554444
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE--ecCcHHH---H
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV--TTRSERV---A 313 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~v---~ 313 (991)
.++|.++... ...+.++|.+|++|.|..-+.. +.-.+||.-.+|.-++| ||.++.. +
T Consensus 206 vR~ife~aq~---------------~~~l~krkTilFiDEiHRFNks---QQD~fLP~VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 VRDIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKS---QQDTFLPHVENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhh---hhhcccceeccCceEEEecccCCCccchhH
Confidence 4555544221 1224578999999999654322 23345666677877666 6666542 2
Q ss_pred HHhCCCCceecCCCChHHHHHHHHHHHccCCCC------CCCh---hHHHHHHHHHhhcCCchH
Q 001955 314 RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSE------PKDS---KLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~------~~~~---~~~~~~~~I~~~c~GlPL 368 (991)
.....-.++.|++|..++...++.+..-.-+++ -.++ -...+.+-++..|+|-.-
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 233445688999999999999988743311111 1111 123455667777888753
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.3e-05 Score=92.75 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=117.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-...++ +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 358999999999999987532 245667999999999999998886321111110 00011111111111
Q ss_pred HH-----ccCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH
Q 001955 244 RS-----ATNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA 313 (991)
Q Consensus 244 ~~-----l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 313 (991)
.. +..+.......+++.+.+... ..++.-++|||+++..+...|..+...+.......++|+||.+.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000001112233333322221 224556889999998887888888888877667888888887643 22
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGR 375 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~ 375 (991)
.. .+.-..+.++.++.++..+.+.+.+...+... -.+....|++.++|.. -|+.++-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 12224788999999999999988765443222 1245678999998855 45555443
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=9e-06 Score=92.96 Aligned_cols=192 Identities=13% Similarity=0.115 Sum_probs=115.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-. -++.. ..+..-..-+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCC-CCCccCHHHHHHh
Confidence 358999999999999987532 34678999999999999999988631110 01110 0011111111111
Q ss_pred HHccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH
Q 001955 244 RSATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 313 (991)
..-.. ........+++.+.+... ..+++-++|+|++..-+......+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 10000 000112233333222211 235667899999988777778888888877666778888776532 22
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.. ......+++++++.++..+.+.+.+...+... -.+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 11 22334788999999999998888765443322 22456789999999774443
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.1e-05 Score=95.22 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=114.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+.-++.|..++.... -...+.++|++|+||||+|+.+++...-....... .+..-..-..+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 358999999999998887531 23456899999999999999999742111110000 000000000010
Q ss_pred HH-------ccCC-CCcccCHHHHHHHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHH
Q 001955 244 RS-------ATNR-ESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVA 313 (991)
Q Consensus 244 ~~-------l~~~-~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~ 313 (991)
.. +... .....+..++...+.. ...+++-++|||++..-.......+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 0011112222222221 12467779999999988878888888888776666777766654 3333
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTI 373 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~ 373 (991)
.. ......+.+++|+.++..+.+.+.+-..+.. --.+....|++.++|.|- |+.++
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2223578999999999999988866432221 123556889999999884 44444
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=8.8e-06 Score=88.84 Aligned_cols=182 Identities=11% Similarity=0.130 Sum_probs=106.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|.+..++.+..++... ....+.++|++|+||||+|+.+++.. ....|. .++-+..++..... .++..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 34789888888888776642 33447799999999999999998731 111221 11112222222211 12222
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHHH-hCCCC
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVARI-TSKLP 320 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~ 320 (991)
+..+...... .-.++.-+++||+++.-.......+...+......+++|+++... .+... .....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2111100000 001456799999998876666666666665545567777776542 22111 11224
Q ss_pred ceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 321 FHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
.++++++++++....+...+-..+..-. .+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6889999999999988887754433221 245688899998877443
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.33 E-value=9.2e-06 Score=95.75 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=119.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc---cceEEEEecC---CCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF---NLRMWVCVSD---IFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~---~~~~~~ 237 (991)
+.++|++..++.+...+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35899999999988877532 34579999999999999999998754333322 1233554432 112222
Q ss_pred HHHHH---------------HHHccC------------------CCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh
Q 001955 238 IVEKM---------------IRSATN------------------RESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR 284 (991)
Q Consensus 238 ~~~~i---------------~~~l~~------------------~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~ 284 (991)
+...+ +...+. ++.+..+ ...+..+.+.++++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 111110 0011111 2356778888888899999887777666
Q ss_pred HHHHHHHHHhcCCCCCcEEEE--ecCcHHH-HHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHH
Q 001955 285 DKWLELEALLMNGVSGSKIVV--TTRSERV-ARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVV 360 (991)
Q Consensus 285 ~~~~~l~~~l~~~~~gs~iiv--TTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~ 360 (991)
..|..+...+..+.+...+++ ||++... ... ......+.+.+++.++.++++.+.+-..+... -.++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l----s~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL----AAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence 678777777766666655655 6664331 111 11223567899999999999998764322111 124445566
Q ss_pred hhcCCchHHHHHHHHH
Q 001955 361 GKCAGVPLAIRTIGRL 376 (991)
Q Consensus 361 ~~c~GlPLal~~~~~~ 376 (991)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665446666655544
No 67
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=104.37 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=91.4
Q ss_pred CcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcc-ccCccccCCCCccEEEccCCCCccccchhhhcccCCC
Q 001955 547 LRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE-TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQ 625 (991)
Q Consensus 547 Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 625 (991)
++.|.+.++..... ++..+.++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|..+++|++|+
T Consensus 420 v~~L~L~~n~L~g~------ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGF------IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCcccc------CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 56666666655433 3556789999999999999998 7898999999999999999998889999999999999
Q ss_pred EEeCCCCCCCcccccccccc-ccCcEEeeccccccCc
Q 001955 626 TLDLSCCDDLVELPRDIGKM-VSLRHLAIESCLSLTD 661 (991)
Q Consensus 626 ~L~L~~~~~~~~lp~~i~~L-~~L~~L~l~~~~~~~~ 661 (991)
+|+|++|...+.+|..++.+ .++..+++.+|..+-.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999998888999988764 5778899988854433
No 68
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.6e-05 Score=82.20 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=89.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
..+.|+|.+|+|||+|++.+++. .......+.|+++.+ ....+. +.+..+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~l--~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALEAL--EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHHHH--hcC
Confidence 45999999999999999999874 223333556665422 111110 111111 234
Q ss_pred eEEEeccccccC-hHHHHH-HHHHhcC-CCCCcEEEEecCcHH---------HHHHhCCCCceecCCCChHHHHHHHHHH
Q 001955 272 YLLVLDDVWNEN-RDKWLE-LEALLMN-GVSGSKIVVTTRSER---------VARITSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 272 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
-+||+||+.... ...|.. +...+.. ...|..||+|++... +...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 123432 2222221 124667999998532 2222333457899999999999999987
Q ss_pred HccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 340 AFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
+...+-.. -.++..-|++.+.|..-.+.
T Consensus 175 a~~~~l~l----~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 175 AQRRGLAL----DEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHcCCCC----CHHHHHHHHHhCCCCHHHHH
Confidence 76543222 13556788888887765553
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.7e-05 Score=90.20 Aligned_cols=193 Identities=14% Similarity=0.182 Sum_probs=114.0
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccc-eEEEEecCCCChHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNL-RMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~ 243 (991)
+++|-+..++.+...+.... -...+.++|++|+||||+|+.+++...-...... -.+..+.. ......+.
T Consensus 22 dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHHh
Confidence 58899998888888776431 3457889999999999999999874211110000 00000000 00001111
Q ss_pred HHccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE-ecCcHHHH
Q 001955 244 RSATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV-TTRSERVA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~v~ 313 (991)
..... +.......+++...+... +.+++-++|+|+++.-....|..+...+....+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000 000112233333333221 345677899999998777888888888877666667665 44444444
Q ss_pred HHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 314 RIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 314 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
... .....+++.+++.++....+.+.+...+... -.+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 332 2334788999999999999998876544322 1245577999999977433
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.8e-05 Score=90.61 Aligned_cols=185 Identities=13% Similarity=0.136 Sum_probs=113.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc-------------------ccccce
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK-------------------THFNLR 224 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 224 (991)
.+++|.+..++.+...+.... -...+.++|++|+||||+|+.+++...-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 358899999999998887531 34567899999999999999998621100 011112
Q ss_pred EEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEE
Q 001955 225 MWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKI 303 (991)
Q Consensus 225 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 303 (991)
+++.......+ .+..++...+... ..+++-++|+|++..-+...+..+...+......+++
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22221111111 1122222222211 2356779999999887777888888888876666666
Q ss_pred EEecCc-HHHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHH
Q 001955 304 VVTTRS-ERVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGR 375 (991)
Q Consensus 304 ivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~ 375 (991)
|++|-+ ..+... ......+++++++.++....+.+.+-..+... -......|++.++|.+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 655443 333322 22335789999999998888777554332211 2345578999999966 45555543
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.4e-06 Score=90.29 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=111.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+..+..|..++.... -...+.++|++|+||||+|+.+++...-. .... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 358999988888888887532 23467899999999999999998742111 0000 000111111111111110
Q ss_pred HHcc---C-CCCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHHHH-h
Q 001955 244 RSAT---N-RESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVARI-T 316 (991)
Q Consensus 244 ~~l~---~-~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~~~-~ 316 (991)
..+. . ......+..++.+.+... ..++.-++|+|+++.-....+..+...+........+|++|.. ..+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0000 0 000111222233333221 2356679999999988888888888888665455565555544 333222 2
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHH
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLA 369 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 369 (991)
.....+.+.+++.++..+.+.+.+...+... -.+....|++.++|.+--
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHH
Confidence 2224688999999999888888765433211 235568899999999843
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=2.2e-05 Score=86.47 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=107.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe--cCCCChHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV--SDIFDVTTIVEK 241 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 241 (991)
.+++|++..++.+..++... ....+.++|.+|+||||+|+.+++... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 35889999999999988643 334579999999999999999987421 11121 112222 2211111 1111
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHH-HhCCC
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVAR-ITSKL 319 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~-~~~~~ 319 (991)
.+..+....+ .-...+-++++|+++.........+...+......+++|+++... .+.. .....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 001235689999997665555666777776655667777776432 1111 11122
Q ss_pred CceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 320 PFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
..+++.+++.++....+...+...+..- -.+....+++.++|.+--+..
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3678999999999888888775443221 135668889999998765433
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.9e-05 Score=90.15 Aligned_cols=199 Identities=12% Similarity=0.135 Sum_probs=114.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||-+.-++.|..++..+. -...+.++|..|+||||+|+.+.+...-... +...-+ .+..+......+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 358999999999999987532 3456789999999999999988863211000 000000 000000001111111
Q ss_pred HHc-----cCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHH
Q 001955 244 RSA-----TNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVA 313 (991)
Q Consensus 244 ~~l-----~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~ 313 (991)
..- ..+......++++.+.+... ..++.-++|||+++.-+...+..+...+......+++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 000 00000112233333333221 2356679999999988878888888888775566676665554 3333
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
.. .+....+.++.++.++..+.+.+.+...+... -.+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 21 12224688999999999998887664333211 1244578999999999644433
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.3e-07 Score=96.70 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred hhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc--cccCCCCccEEEccCCCCcc-ccch
Q 001955 540 ALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS--LIGKLKHLRYFNLSHNADIK-SLPD 616 (991)
Q Consensus 540 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~-~lP~ 616 (991)
....|+++|.|.++.+-.+...+ .-.+...+++|+.|+|+.|.+....+ .-..+++|+.|.|++|.+.. .+-.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFP----VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHH----HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH
Confidence 45677788888777765443221 34556677888888888877664322 12356778888888887431 2223
Q ss_pred hhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCC--cCCCCCCCCCcCCcccc
Q 001955 617 SVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMP--NGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 617 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~ 680 (991)
....+++|+.|+|.+|..+..--.....+..|+.|+|++|+. ...+ .-++.++.|..|++..+
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhcccc
Confidence 345677788888877643332222334456677778877743 3334 33455555555555433
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.27 E-value=1.3e-06 Score=89.99 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=61.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC--CChHHHHHHHHHHccCCCCcccCH------HHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI--FDVTTIVEKMIRSATNRESEKLDL------DQLQE 261 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~l~~ 261 (991)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+... +++.++++++...+-....+.... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999975444 8999999997766 789999999843332111111111 11222
Q ss_pred HHHhH-hCCceeEEEecccc
Q 001955 262 RLRGE-IDGKRYLLVLDDVW 280 (991)
Q Consensus 262 ~l~~~-L~~kr~LlVlDdv~ 280 (991)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 24899999999994
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.24 E-value=8.9e-06 Score=96.69 Aligned_cols=170 Identities=22% Similarity=0.315 Sum_probs=94.9
Q ss_pred ceeecchhHH---HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 165 DIIGRDGDKN---EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 165 ~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
+++|.+..+. .+...+... ....+.++|++|+||||+|+.+++. ....|. .++.+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~----- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK----- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH-----
Confidence 4788877664 455555432 4456789999999999999999974 333331 111110 0000
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHh--CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE--ecCcHH--HHHH
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEI--DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV--TTRSER--VARI 315 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TTR~~~--v~~~ 315 (991)
+..+......+.+ .+++.+|||||++.-+...++.+...+. .|+.+++ ||.+.. +...
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1111111221111 2467899999998765555665655443 3555555 344431 2111
Q ss_pred -hCCCCceecCCCChHHHHHHHHHHHccCCC---CCCChhHHHHHHHHHhhcCCch
Q 001955 316 -TSKLPFHALRGLPEDMSWSLFTRMAFEQGS---EPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 316 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~---~~~~~~~~~~~~~I~~~c~GlP 367 (991)
......+.+++++.++...++.+.+-.... .....--.+....|++.+.|..
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 122347889999999999999876531000 0000111345677888888864
No 77
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=2e-05 Score=84.65 Aligned_cols=215 Identities=15% Similarity=0.169 Sum_probs=133.8
Q ss_pred CcCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 161 VHKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..+..++||+.|+..+..|+...-+ ....+-+.|.|.+|.|||.+...++.+......=.+++++.+..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3466799999999999999876543 34667899999999999999999998633222213567888877778888999
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCC-c-eeEEEeccccccChHHHHHHHHHhcCC-CCCcEEEEecCcH--H----
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDG-K-RYLLVLDDVWNENRDKWLELEALLMNG-VSGSKIVVTTRSE--R---- 311 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~-k-r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~~--~---- 311 (991)
.|...+...........+.++.+.+.... + .+|+|+|..+.-....-..+...|.+. -+++|+|+.---. +
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 99888732221111224445555555543 3 689999998653222222233333332 3677766543211 1
Q ss_pred -HHH--H-hC-CCCceecCCCChHHHHHHHHHHHccCCCCC-CChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 312 -VAR--I-TS-KLPFHALRGLPEDMSWSLFTRMAFEQGSEP-KDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 312 -v~~--~-~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~-~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
+.. . .. ....+..+|.+.++-.+.|..+.-...... .+..++-.|++++...|-+--|+.+.-+++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 111 1 11 123677899999999999998865433221 223455556666666666677776666544
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=9.2e-07 Score=100.49 Aligned_cols=128 Identities=31% Similarity=0.496 Sum_probs=102.3
Q ss_pred hhhcCCCCcEEEecccCCCcccchhhHhhhhhccCC-cccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhh
Q 001955 540 ALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFK-CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSV 618 (991)
Q Consensus 540 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i 618 (991)
.+...+.+..|.+..+...+. +.....++ +|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i-------~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDI-------PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhhcccceeEEecCCcccccC-------ccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 344556788888777765542 33445554 8999999999999998889999999999999999 99999988
Q ss_pred hcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCc
Q 001955 619 SRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 619 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l 677 (991)
+.+++|+.|++++ +.+..+|..+..+..|+.|.+++|. ....+..+.++.++..|.+
T Consensus 183 ~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 183 SNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccccc
Confidence 8999999999999 5689999988888889999999883 4455556666666666553
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=5.8e-05 Score=84.39 Aligned_cols=183 Identities=13% Similarity=0.173 Sum_probs=111.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc--c------------------cccc
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK--T------------------HFNL 223 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~------------------~F~~ 223 (991)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+.+...-. . +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 358999999999999886532 34578899999999999998887531100 0 1111
Q ss_pred eEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcE
Q 001955 224 RMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSK 302 (991)
Q Consensus 224 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 302 (991)
+++........ .+..++.+.+... ..+++-++|+|++..-.......+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 12211111110 0112222222111 224556889999976655667777777766556677
Q ss_pred EEEecCcHH-HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 303 IVVTTRSER-VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 303 iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
+|++|.+.. +... ......+++.+++.++..+.+...+-..+.... .+.+..+++.++|.|-.+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 777775543 2222 122346788999999998888887654432111 2567888999999886655443
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3e-05 Score=88.07 Aligned_cols=183 Identities=18% Similarity=0.246 Sum_probs=106.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccc--c-----------------cce
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH--F-----------------NLR 224 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F-----------------~~~ 224 (991)
+++||.+..++.+...+..+. -...+.++|++|+||||+|+.+++...-... + ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 358998888888877776431 2356889999999999999999863211100 0 011
Q ss_pred EEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHH---HHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCC
Q 001955 225 MWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQ---ERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSG 300 (991)
Q Consensus 225 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~---~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (991)
+.+..+.. ...+++. +.... ...+++-++|+|+++.-.......+...+......
T Consensus 89 ~el~aa~~---------------------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDAASN---------------------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeCccc---------------------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11111111 1122222 11111 12356679999999765555566676666654444
Q ss_pred cEEEEecCc-HHHHHHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC-chHHHHHHHHH
Q 001955 301 SKIVVTTRS-ERVARIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG-VPLAIRTIGRL 376 (991)
Q Consensus 301 s~iivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLal~~~~~~ 376 (991)
..+|++|.+ ..+.... .....+++.+++.++....+.+.+...+..- -.+....|++.++| ++.|+..+-.+
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555444443 3333222 2334788999999999888888765433211 12456778887764 56777666553
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3.1e-05 Score=88.68 Aligned_cols=196 Identities=12% Similarity=0.135 Sum_probs=113.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++... |.-|.... .+......+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 358999999999999886532 346788999999999999999886311 11121110 111111112221
Q ss_pred HHccCC-----CCcccCHHHHHHHH---HhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHH
Q 001955 244 RSATNR-----ESEKLDLDQLQERL---RGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVA 313 (991)
Q Consensus 244 ~~l~~~-----~~~~~~~~~l~~~l---~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~ 313 (991)
...... .......+++...+ ... ..+++-++|+|+++.-....+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111000 00111223322222 111 1234446999999877667788888888766556666655543 3333
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGR 375 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~ 375 (991)
.. ......+++.+++.++....+...+...+... -.+.+..+++.++|.+ -|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 22334788999999999988887664433211 1245678999999966 45544443
No 82
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.20 E-value=1.6e-05 Score=88.54 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=100.8
Q ss_pred CCceeecchhHHHHHHHHhCCCCCC-------CCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESE-------IESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV 235 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 235 (991)
..++.|+++.++++.+.+...-... ....+-+.++|++|+|||++|+++++. ....| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc----h
Confidence 3568999999999998775321100 113456899999999999999999984 32232 2221 1
Q ss_pred HHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHHh---cC--CCC
Q 001955 236 TTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEALL---MN--GVS 299 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~ 299 (991)
..+....... ....+...+...-...+.+|+|||++.. +......+...+ .. ...
T Consensus 190 ~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 1111111100 0111111222222245789999998652 111122233332 21 124
Q ss_pred CcEEEEecCcHHHH-----HHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 300 GSKIVVTTRSERVA-----RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 300 gs~iivTTR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
+.+||.||...... ........+.++..+.++..++|..++....... ..++ ..+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDL----EAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCH----HHHHHHcCCCC
Confidence 67788888864322 1112244788999999999999998876543221 1122 56777777654
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.7e-05 Score=85.15 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=109.5
Q ss_pred ceeecchhHHHHHHHHhCCCCC----CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSES----EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
+++|-+.-++.+..++...... ...-...+.++|++|+|||++|+.+++..--... . + .....-..-+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~----~~Cg~C~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--E----PGCGECRACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--C----CCCCCCHHHH
Confidence 5889999999999998764210 0012466889999999999999888752110000 0 0 0000000001
Q ss_pred HHHHHccCC------CCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 241 KMIRSATNR------ESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 241 ~i~~~l~~~------~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
.+.....++ .......+++.+.+... ..+++-++|+|+++.-+......+...+....++..+|++|.+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 111000000 00111223322222111 12455688889998877777777888887766677777777664
Q ss_pred H-HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 311 R-VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 311 ~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
. +... .+....+.+.+++.++..+.+.+... . . .+.+..++..++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~---~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V---D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 3222 22234788999999999888875321 1 1 244678999999999755444
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.9e-05 Score=85.77 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=111.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc----c---------------cccccce
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED----V---------------KTHFNLR 224 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~---------------~~~F~~~ 224 (991)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+++..- . .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 358999988888888776431 235788999999999999998875210 0 0011112
Q ss_pred EEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCC
Q 001955 225 MWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSG 300 (991)
Q Consensus 225 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (991)
+.++.+... ..+++...+... ..+++-++|+|++..-+......+...+....+.
T Consensus 88 ~eidaas~~---------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDAASNT---------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEecccCC---------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 233322222 222222221111 2355668999999877777788888888877677
Q ss_pred cEEEEecCc-HHHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 301 SKIVVTTRS-ERVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 301 s~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
+++|++|.. ..+... ......+.+.+++.++..+.+.+.+...+... -.+....|++.++|.+-.+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 777766643 344322 22334788999999999999888775544322 1245678999999877543
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=2.9e-05 Score=79.49 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
.+.+.|+|++|+|||+|++.+++.. ...|++.. .+...++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3568999999999999999988642 11233321 1111111111 11
Q ss_pred eeEEEecccccc--ChHHHHHHHHHhcCCCCCcEEEEecCc---------HHHHHHhCCCCceecCCCChHHHHHHHHHH
Q 001955 271 RYLLVLDDVWNE--NRDKWLELEALLMNGVSGSKIVVTTRS---------ERVARITSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 271 r~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
-+|++||+... +...+..+...+.. .|..+|+|++. +++...+....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 22333343333333 36678988874 223334455568999999999999999988
Q ss_pred HccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 340 AFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
+-..+-.. -+++..-|++++.|..-++..+-.
T Consensus 166 ~~~~~~~l----~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQLYV----DPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcCCCC----CHHHHHHHHHHhhhhHHHHHHHHH
Confidence 75433211 135667888888888777765433
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=3.2e-05 Score=80.15 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=89.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
..+.+.|+|.+|+|||+||+.+++... ... ...++++..... .. + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hhc-c
Confidence 345789999999999999999998421 111 133455433211 00 0 011 2
Q ss_pred ceeEEEeccccccChHHHHHHHHHhcCC-CCCc-EEEEecCcHHHH--------HHhCCCCceecCCCChHHHHHHHHHH
Q 001955 270 KRYLLVLDDVWNENRDKWLELEALLMNG-VSGS-KIVVTTRSERVA--------RITSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTTR~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
..-+||+||+...+...-..+...+... ..+. .+|+|++..... ..+.....++++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3447889999654332323344444321 1333 466776643321 12222357889999998877777665
Q ss_pred HccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 340 AFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
+-..+-.. -.++...+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43222211 23566888889999999887776655
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=5.5e-05 Score=78.39 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=92.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
...+.|+|++|+|||+|++.+++.. ...-..+.|+++..... ...++.+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 3578999999999999999998742 22223455666532100 0011111221 1
Q ss_pred eeEEEeccccccC-hHHHHHH-HHHhcCC-CCC-cEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHHHH
Q 001955 271 RYLLVLDDVWNEN-RDKWLEL-EALLMNG-VSG-SKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSLFT 337 (991)
Q Consensus 271 r~LlVlDdv~~~~-~~~~~~l-~~~l~~~-~~g-s~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (991)
--++++||+.... ...|... ...+... ..| .++|+||+.. ++...+....+++++++++++-.+.+.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2478999996532 1345432 2222211 123 3799999854 233344555689999999999999998
Q ss_pred HHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 338 RMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
+++...+-.. -+++..-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGFEL----PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 8775433211 23667888888888776665554433
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=6.2e-05 Score=82.66 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=115.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEE---EEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMW---VCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w---v~~s~~~~~~~~~~ 240 (991)
.+++|.+..++.+.+.+.... -...+.++|+.|+||+|+|..+.+..--......... ............-+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999887632 3457889999999999999777763110000000000 00000000001111
Q ss_pred HHHHHccCC----------C----CcccCHHHHHHHHHhHh-----CCceeEEEeccccccChHHHHHHHHHhcCCCCCc
Q 001955 241 KMIRSATNR----------E----SEKLDLDQLQERLRGEI-----DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGS 301 (991)
Q Consensus 241 ~i~~~l~~~----------~----~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 301 (991)
.+...-..+ . ...-.++++.+ +.+.+ .+.+-++|+||++..+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111111000 0 01123444332 33332 2556799999999888888888888887766677
Q ss_pred EEEEecCcHHHH-HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 302 KIVVTTRSERVA-RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 302 ~iivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
.+|++|.+.... .. ......+.+.+++.++..+++.+.... . .. .....+++.++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~-~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----L-PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----C-CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 777777765422 22 223347889999999999999875421 1 11 122678999999998665543
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3e-05 Score=90.25 Aligned_cols=194 Identities=11% Similarity=0.119 Sum_probs=114.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+.-++.+...+.... -...+.++|..|+||||+|+.+++...-...+ ....+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 358999999999988887531 23557899999999999999998742111000 001111111122221
Q ss_pred HHccC-----CCCcccCHHHHH---HHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSATN-----RESEKLDLDQLQ---ERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~---~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
..-.. ........+++. +.+.. -..+++-++|||+++.-+......+...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10000 000011223332 22221 134667799999999888788888888887766666666666553 332
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
.. ......+.+++++.++..+.+.+.+-..+... -......|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 21 22234788999999999998887654332211 1244578999999977544333
No 90
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.9e-05 Score=86.24 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=111.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE-ecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC-VSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 242 (991)
.+++|.+..++.+..++..+. -...+.++|++|+||||+|+.+++...-....+...|.. ....+..-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 358899988888888887431 234578999999999999999886321111111111110 00111111111111
Q ss_pred HHHccCC-----CCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEec-CcHHH
Q 001955 243 IRSATNR-----ESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTT-RSERV 312 (991)
Q Consensus 243 ~~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v 312 (991)
....... .......+++.+..... ..+++-++|+|++..-....+..+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1111000 00111234443322211 23456688999998776678888888887766677766655 43333
Q ss_pred HHHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 313 ARIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 313 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
.... .....+++.+++.++..+.+...+-..+..- -.+.+..|++.++|.+--+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 3221 1123678999999998888877664332211 2356788999999977433
No 91
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=3.1e-06 Score=90.65 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=61.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC--ChHHHHHHHHHHccCCCCcccCHHHHH-----HH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF--DVTTIVEKMIRSATNRESEKLDLDQLQ-----ER 262 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~-----~~ 262 (991)
.-+..+|+|++|+||||||+++|++.... +|+.++||.+.+.+ ++.++++++...+-....+.....+.. -.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999964444 89999999998887 778888888643321111111111111 11
Q ss_pred HHhH--hCCceeEEEecccc
Q 001955 263 LRGE--IDGKRYLLVLDDVW 280 (991)
Q Consensus 263 l~~~--L~~kr~LlVlDdv~ 280 (991)
..++ -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 1122 25799999999994
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.9e-05 Score=88.34 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=113.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccc--ccceEEEEecCCCChHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH--FNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~ 241 (991)
+++||-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+..--... ..+... ..+.....-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 358998888888888887532 3467789999999999999998652110000 000000 01111111111
Q ss_pred HHHHccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HH
Q 001955 242 MIRSATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ER 311 (991)
Q Consensus 242 i~~~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~ 311 (991)
|...-.. +.......+++.+.+... ..++.-++|||+|+.-+...+..+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1110000 001112233333333221 1245568999999988878888888888776566666665543 33
Q ss_pred HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 312 VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 312 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
+... ......+.+++++.++..+.+.+.+...+... -.+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 23335788999999999988888765443322 124567889999987744433
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=1.9e-05 Score=91.39 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=111.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-..... +..+.. ....+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~----C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGV----CQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcc----cHHHHHHh
Confidence 358999999999999987532 346789999999999999998886311110000 000000 00000000
Q ss_pred HH-----ccCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH
Q 001955 244 RS-----ATNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA 313 (991)
Q Consensus 244 ~~-----l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 313 (991)
.. +..........+.+.+.+... ..+++-++|+|++...+......+...+......+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 000001112223333222211 235667899999987766667777777766555667777775432 21
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
.. .+....+.+.+++.++....+.+.+-..+... -.+....|++.++|.+--+..
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHH
Confidence 11 11223577889999999998887765443322 124568899999998844433
No 94
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=4.5e-07 Score=90.60 Aligned_cols=103 Identities=30% Similarity=0.359 Sum_probs=48.3
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
-.+.+|+|++|+|.+..+-. +..|++|+.|||++|. +.++-..-.+|-|.++|.|++| .+..+ +++++|.+|..||
T Consensus 305 L~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLD 380 (490)
T ss_pred hccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhheecc
Confidence 34445555555555544422 4445555555555554 3333333334445555555542 23332 3455555566666
Q ss_pred eccccccCcCC--cCCCCCCCCCcCCcccc
Q 001955 653 IESCLSLTDMP--NGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 653 l~~~~~~~~lp--~~l~~L~~L~~L~l~~~ 680 (991)
+++| .+..+- .+||+|+.|+++.+.++
T Consensus 381 l~~N-~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 381 LSSN-QIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred cccc-chhhHHHhcccccccHHHHHhhcCC
Confidence 6555 222221 34555555555555443
No 95
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=8.6e-05 Score=74.37 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=64.8
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCC
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSE 346 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 346 (991)
+.+-++|+||+..-....+..+...+....+.+.+|++|++. .+... ......+.+.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 556789999998776677888888887766677777777654 22211 122347889999999998888776 1 1
Q ss_pred CCChhHHHHHHHHHhhcCCchH
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPL 368 (991)
. .+.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 2557899999999885
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00011 Score=80.16 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc--cccceEEEEecCCCChHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT--HFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~ 240 (991)
...++|.+...+.+...+.... -...+.|+|+.|+||||+|+.+.+..--.. .+... ............+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3468999999999999887532 345789999999999999988886311100 01111 0011111112223
Q ss_pred HHHHHccC-------C--C-----CcccCHHHHHHHHHhHh-----CCceeEEEeccccccChHHHHHHHHHhcCCCCCc
Q 001955 241 KMIRSATN-------R--E-----SEKLDLDQLQERLRGEI-----DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGS 301 (991)
Q Consensus 241 ~i~~~l~~-------~--~-----~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 301 (991)
.+...-.+ . . ...-.++++. .+.+.+ .+++-++|+|+++.-+......+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222110 0 0 0111234433 333333 3566799999999888778888888887755555
Q ss_pred EEEEecCcH-HHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 302 KIVVTTRSE-RVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 302 ~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
.+|++|... .+... .+....+.+.+++.++..+++.+...... . -.+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---S---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 655555443 22211 12224789999999999999987432111 1 12446789999999998665444
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=2.4e-06 Score=67.48 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=37.2
Q ss_pred CcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCC
Q 001955 575 KCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCC 632 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~ 632 (991)
++|++|++++|.++.+| ..|..+++|++|++++|. +..+|. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777665 356677777777777766 444443 5566666777766665
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.9e-05 Score=86.68 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=110.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++||-+.-++.+..++.... -...+.++|++|+||||+|+.+++..--...+. ...+..-...+.|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHh
Confidence 358999999999999997532 235678999999999999998886321111110 00000001111111
Q ss_pred HHccC-----CCCcccCHHHHHHHHHh----HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSATN-----RESEKLDLDQLQERLRG----EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
..-.. ........+++.+.+.. -..++.-++|+|+++.-+......+...+....+.+++|++|.+. .+.
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 00000 00011223333222221 123566689999998877777888888887766677777665543 332
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.. ......+++++++.++....+.+.+-..+...+ .+....|++.++|.+--+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHH
Confidence 21 122246789999999887777666544332211 2345778889999875443
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.14 E-value=5.3e-05 Score=77.37 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=95.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
....+.|+|..|+|||.|++++++. ..... ..++|++ ..++...+...+.. ...++ +.+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~~----~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRD-----GEIEE----FKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSHHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHc-----ccchh----hhhhh
Confidence 3445889999999999999999984 33222 2355654 34555566555542 12222 33333
Q ss_pred CCceeEEEeccccccCh-HHHHH-HHHHhcCC-CCCcEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHH
Q 001955 268 DGKRYLLVLDDVWNENR-DKWLE-LEALLMNG-VSGSKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSL 335 (991)
Q Consensus 268 ~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 335 (991)
+ .-=+|++||++.... ..|.. +...+... ..|-+||+|++.. ++...+...-.++++++++++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 3 345788999976532 23433 22222221 2466899999643 2334445555899999999999999
Q ss_pred HHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 336 FTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 336 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
+.+.+...+-.- -.+++.-|++.+.+..=.+..+-.
T Consensus 175 l~~~a~~~~~~l----~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGIEL----PEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC----cHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999886554321 235667777777766655544433
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.9e-08 Score=96.43 Aligned_cols=179 Identities=22% Similarity=0.298 Sum_probs=105.8
Q ss_pred CcccEEEccCCCcc--ccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccc--cccccccCcE
Q 001955 575 KCLRTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPR--DIGKMVSLRH 650 (991)
Q Consensus 575 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 650 (991)
+.|+.|||++..|+ .+-..+.+|.+|+.|+|.|+.+-..+-..|.+-.+|+.|||+.|+.+.+... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45788889888877 3445567788888888888875555656677777888888888776654322 2355566666
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecC
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDA 730 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 730 (991)
|+++.|......-.. ....
T Consensus 265 LNlsWc~l~~~~Vtv---------------------------------------------~V~h---------------- 283 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV---------------------------------------------AVAH---------------- 283 (419)
T ss_pred cCchHhhccchhhhH---------------------------------------------HHhh----------------
Confidence 666655322111000 0000
Q ss_pred CCCccchhHhhhccCCCCCCcceEEEeeeCCCcc----CcccccccccCceeecccccccc--CCCCCCCCccceeeccc
Q 001955 731 NKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL----SSWLSSVTNLTMIDISICIKCQY--IPELDQLPSLKRLRLFK 804 (991)
Q Consensus 731 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l----p~~l~~l~~L~~L~L~~~~~~~~--lp~l~~l~~L~~L~l~~ 804 (991)
-.++|+.|.++|+..+-. ..-...+++|..|+|++|..++. +..+.+++.|++|.++.
T Consensus 284 ----------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 284 ----------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ----------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 002233333333321111 11122678888888888876554 22466778888888888
Q ss_pred cccceeccCCCCCCCCCCCCccEEeeccc
Q 001955 805 LSALEYISSSSPPSTTIFPSLEELRIFAC 833 (991)
Q Consensus 805 ~~~l~~i~~~~~~~~~~~~~L~~L~l~~~ 833 (991)
|..+- ....-.+...|+|.+|++.+|
T Consensus 348 CY~i~---p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 348 CYDII---PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcCCC---hHHeeeeccCcceEEEEeccc
Confidence 75442 222234456788888888877
No 101
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=92.76 Aligned_cols=61 Identities=28% Similarity=0.334 Sum_probs=35.1
Q ss_pred ccCCcccEEEccCCCccccC--ccccCCCCccEEEccCCCCcc--ccchhhhcccCCCEEeCCCC
Q 001955 572 SSFKCLRTLNLSNSEIETVP--SLIGKLKHLRYFNLSHNADIK--SLPDSVSRLLNLQTLDLSCC 632 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~--~lP~~i~~L~~L~~L~L~~~ 632 (991)
++++.|+...|.++.+...+ .....|++++.|||++|-+-. .+-.-...|++|+.|+|+.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 45666777777766666544 255666777777777664211 22223345666666666664
No 102
>PRK05642 DNA replication initiation factor; Validated
Probab=98.12 E-value=6e-05 Score=77.98 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=92.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
...+.|+|.+|+|||+||+.+++.. ...-..++|++..+ +... ...+. +.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~~~~----~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GPELL----DNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hHHHH----HhhhhC
Confidence 3578999999999999999998732 22223456776432 1111 01222 222222
Q ss_pred eeEEEeccccccC-hHHHHH-HHHHhcC-CCCCcEEEEecCcHHH---------HHHhCCCCceecCCCChHHHHHHHHH
Q 001955 271 RYLLVLDDVWNEN-RDKWLE-LEALLMN-GVSGSKIVVTTRSERV---------ARITSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 271 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTTR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
=++|+||+.... ...|.. +...+.. ...|..+|+|++...- ...+....+++++++++++-.+.+..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 268899996431 234543 3333322 1246678888875321 12223335788999999999999987
Q ss_pred HHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 339 MAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
++...+-.- -.++..-|++++.|..-.+..+-..|
T Consensus 178 ka~~~~~~l----~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHL----TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCC----CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 765432211 13667888898888876665554433
No 103
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.4e-05 Score=86.78 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=92.5
Q ss_pred CCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCC
Q 001955 745 LKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPS 824 (991)
Q Consensus 745 l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 824 (991)
+..+.+++.|.+.++....+|. -.++|+.|.+++|..+..+|..- .++|++|.+.+|..+..+ .++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL----------P~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL----------PES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc----------ccc
Confidence 3444667777777666566662 23357777777766655555311 246777777666544321 234
Q ss_pred ccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCC-CccCeeeeccCCCCC--CCCCccCCCCCCc
Q 001955 825 LEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPF-SKLKSLTIESIDDLE--TWPEEMMPNFPSI 901 (991)
Q Consensus 825 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~l~--~l~~~~~~~l~~L 901 (991)
|+.|.+..+ .+.. +..+ ++|+.|.+.++.... .++. .+ -++|
T Consensus 114 Le~L~L~~n-~~~~-------------------------------L~~LPssLk~L~I~~~n~~~~~~lp~-~L--PsSL 158 (426)
T PRK15386 114 VRSLEIKGS-ATDS-------------------------------IKNVPNGLTSLSINSYNPENQARIDN-LI--SPSL 158 (426)
T ss_pred cceEEeCCC-CCcc-------------------------------cccCcchHhheecccccccccccccc-cc--CCcc
Confidence 555555421 1110 1222 467777775432211 1111 11 2589
Q ss_pred cEEEEecCCCCCcccccCCCCCCCCeEeeecCCC------CCcCCCCCCcCeEEEecCcchhhhhcCCCCCCC
Q 001955 902 QNISIELCPKLISLPQRLNKATTLKTVGIYDCPN------MAILPEGLQLQSLEIIQCPQLSERCGNNMAVDW 968 (991)
Q Consensus 902 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~------l~~lp~~~~L~~L~i~~c~~L~~~~~~~~~~~~ 968 (991)
+.|++++|..+ .+|..+. .+|+.|+++.|.. ...+|++ + .|.+.+|-++..---.+.|..+
T Consensus 159 k~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~n--l-~L~f~n~lkL~~~~f~d~~i~~ 225 (426)
T PRK15386 159 KTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDG--L-DIDLQNSVLLSPDVFKDKNITF 225 (426)
T ss_pred cEEEecCCCcc-cCccccc--ccCcEEEecccccccccCcccccccc--c-EechhhhcccCHHHhhcccccc
Confidence 99999999654 4565443 5899999987641 2345544 4 8888888666543333333333
No 104
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=7.4e-07 Score=89.11 Aligned_cols=107 Identities=26% Similarity=0.300 Sum_probs=87.6
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
..++.|+.||||+|.|+.+-+++.-++.+|.|++++|. +..+-. +..|++|+.|||++| .+..+-..-.+|-|.+.|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 45678999999999999998889999999999999999 666654 889999999999995 466665555678889999
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCccccCCc
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 683 (991)
.+++| .++++ .++++|-+|..|++..+.+.
T Consensus 358 ~La~N-~iE~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 358 KLAQN-KIETL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ehhhh-hHhhh-hhhHhhhhheeccccccchh
Confidence 99998 55544 57788888888888766544
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00011 Score=85.79 Aligned_cols=197 Identities=15% Similarity=0.198 Sum_probs=115.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc--ceEEEEecCCCChHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN--LRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 241 (991)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-..... .-.+ ..+..-.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 458999999999999887532 345788999999999999999987421111000 0000 00011111122
Q ss_pred HHHHccCC-----CCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEec-CcHH
Q 001955 242 MIRSATNR-----ESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTT-RSER 311 (991)
Q Consensus 242 i~~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~ 311 (991)
|......+ .......+++.+.+... ..+++-++|+|++..-+......+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211110 01112233333222111 22455679999998777677778888887766677776655 3333
Q ss_pred HHHHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 312 VARIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 312 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
+.... .....+++.+++.++....+.+.+-..+... -.+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33221 2234788999999999999888765443222 1255688899999988655443
No 106
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.05 E-value=0.00018 Score=74.66 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=120.2
Q ss_pred hhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccc----ccceEEEEecCCCChHHHHHHHHHHc
Q 001955 171 GDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH----FNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
..++.+.+.+..+.. ....-+.|+|.+|.|||++++++.+....... --.++.|......+...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 445566666665433 35567999999999999999999864221111 11467788888999999999999999
Q ss_pred cCCCCcccCHHHHHHHHHhHhCC-ceeEEEecccccc------ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh---
Q 001955 247 TNRESEKLDLDQLQERLRGEIDG-KRYLLVLDDVWNE------NRDKWLELEALLMNGVSGSKIVVTTRSERVARIT--- 316 (991)
Q Consensus 247 ~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~--- 316 (991)
+...........+.......++. +-=+||+|.+.+. .....-.....+.+.-.=+-|.|-|++.--+-..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 97665555666655555555543 3447889999662 1222333344444444555677777653222111
Q ss_pred --CCCCceecCCCCh-HHHHHHHHHHH--ccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 317 --SKLPFHALRGLPE-DMSWSLFTRMA--FEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 317 --~~~~~~~l~~L~~-~~~~~Lf~~~a--~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
+....+.++.... ++...|+.... .+-.. +..-...++++.|...++|+.=-+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1123556666655 44455554322 22222 2223346889999999999874443
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0001 Score=87.06 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=114.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-..... -...+......+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 358999999999988887531 235678999999999999999986321000000 001111122233332
Q ss_pred HHccCCC-----CcccCHHHHHH---HHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSATNRE-----SEKLDLDQLQE---RLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l~~~~-----~~~~~~~~l~~---~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
.....+. ......+++.+ .+... ..+++-++|+|++..-.......+...+......+.+|++|.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2221110 01122333322 22111 12456789999997766666777877777665666777666543 332
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
.. ......+.+..++.++....+...+...+... -.+.+..|++.++|.+-.+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 22234678899999998888887765443211 12567889999999886554443
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0001 Score=85.40 Aligned_cols=195 Identities=13% Similarity=0.176 Sum_probs=109.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|-+.-++.+..++.... -...+.++|++|+||||+|+.+.+...-.... . ...+.....-..+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~------~-~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGV------T-ATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C-CCCCCCCHHHHHHh
Confidence 358999999999998887532 23567899999999999999987631110000 0 00000000000110
Q ss_pred HHc-----cCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSA-----TNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l-----~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
..- ..........+++.+.+... ..+++-++|+|+++.-.......+...+......+.+|++|.+. .+.
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred cCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 000 00000011223322222111 23566799999998777667777888887765666666666443 222
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTIG 374 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~~ 374 (991)
.. ......+++++++.++..+.+.+.+...+... -......|++.++|.+- |+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 11123678999999999888877654333211 12455788999999774 444443
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00017 Score=81.98 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=101.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
..-+.|+|..|+|||+|++++.+.......-..+++++ ..++...+...+.... +. ...+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~-~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KE-IEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hH-HHHHHHHhc-c
Confidence 35689999999999999999998321111112334443 3456666666654210 11 223333333 3
Q ss_pred eeEEEeccccccCh-HHH-HHHHHHhcCC-CCCcEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHHHHH
Q 001955 271 RYLLVLDDVWNENR-DKW-LELEALLMNG-VSGSKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 271 r~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
.-+||+||+..... ..+ +.+...+... ..|..||+|+... ++...+...-+..+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45889999965421 222 2333333221 2345788887643 2222333445778999999999999999
Q ss_pred HHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 339 MAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
++-..+... .--.++..-|++.+.|.|=.+.-+...+
T Consensus 287 ~~~~~gl~~--~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQ--EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCC--CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 875433110 1124677889999999997776665433
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00016 Score=83.50 Aligned_cols=198 Identities=14% Similarity=0.199 Sum_probs=114.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ ...+..-..-+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 357898888888888886431 245788899999999999999887421110000 00111111111111
Q ss_pred HHccCCC-----CcccCHHHHH---HHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHH
Q 001955 244 RSATNRE-----SEKLDLDQLQ---ERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVA 313 (991)
Q Consensus 244 ~~l~~~~-----~~~~~~~~l~---~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~ 313 (991)
.....+. .....++++. +.+.. -..+++-+||+|+++.-....+..+...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1110000 0011122222 22211 12356679999999887777777888887664455566665554 3333
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHHHh
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGRLL 377 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~~L 377 (991)
.. ......+++++++.++....+...+...+... -.+.+..|++.++|.+ -|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 12224678999999999988888665443211 1355688999999954 6777776554
No 111
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=5.5e-06 Score=65.37 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=53.5
Q ss_pred CccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCC
Q 001955 874 SKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 874 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 934 (991)
|+|++|++++| +++.++...|.++++|++|+|++| .++.+| ..+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 67999999999 899999989999999999999988 677776 468999999999999986
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00027 Score=79.17 Aligned_cols=178 Identities=12% Similarity=0.217 Sum_probs=105.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc------ccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK------THFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+...+.... -.+.+.++|++|+||||+|+.+.+...-. ..|...+ +.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~------ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDA------ 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecc------
Confidence 348899999999999987531 34688899999999999999987632110 1111111 11110
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHh----HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC-cHHH
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRG----EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR-SERV 312 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v 312 (991)
......+++...+.+ -..+++-++++|++.......+..+...+......+.+|++|. ...+
T Consensus 85 -------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 85 -------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred -------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 001111222221111 1124556899999976655667777776655444556655553 3222
Q ss_pred HHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 313 ARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
... ......+++.+++.++....+...+...+.... .+.+..|++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 221 222347889999999999888887755443211 356788888999866533
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00018 Score=84.04 Aligned_cols=201 Identities=12% Similarity=0.137 Sum_probs=112.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE-ecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC-VSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 242 (991)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-...++.-.|-. +...+..-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 358999998998888886431 235588999999999999988886321111110000110 00111111111111
Q ss_pred HHHccCC-----CCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEec-CcHHH
Q 001955 243 IRSATNR-----ESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTT-RSERV 312 (991)
Q Consensus 243 ~~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v 312 (991)
...-... .......+++...+... ..+.+-++|+|+++.-.......+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1110000 00111234443332222 23455678999998776667778888887765566655555 43444
Q ss_pred HHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHH
Q 001955 313 ARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTI 373 (991)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~ 373 (991)
... ......+++.+++.++....+.+.+...+... -.+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHH
Confidence 332 23345789999999998888877654333211 13556889999999554 44443
No 114
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.00029 Score=74.97 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=74.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. ..+ .....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---cC
Confidence 3578899999999999999976311111111112444431 122 22221111 11222223322 23
Q ss_pred eEEEecccccc---------ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh--------CCCCceecCCCChHHHHH
Q 001955 272 YLLVLDDVWNE---------NRDKWLELEALLMNGVSGSKIVVTTRSERVARIT--------SKLPFHALRGLPEDMSWS 334 (991)
Q Consensus 272 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 334 (991)
-+|+||++..- ..+.-..+...+.....+.+||+++....+.... .....+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 58999999642 1222333445555554566777777654432211 123368899999999999
Q ss_pred HHHHHHccC
Q 001955 335 LFTRMAFEQ 343 (991)
Q Consensus 335 Lf~~~a~~~ 343 (991)
++...+-..
T Consensus 204 I~~~~l~~~ 212 (287)
T CHL00181 204 IAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHh
Confidence 988876443
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00019 Score=83.24 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=114.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....+ + ..+..-..-+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 358999999999999987532 345678999999999999999886311100000 0 0000001111111
Q ss_pred HHcc-------CCCCcccCHHHH---HHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC-cHH
Q 001955 244 RSAT-------NRESEKLDLDQL---QERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR-SER 311 (991)
Q Consensus 244 ~~l~-------~~~~~~~~~~~l---~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~ 311 (991)
..-+ .+......++++ ...+... ..+++-++|+|++..-.......+...+........+|++|. ...
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 0000 000011122322 2222211 234566889999988777788888888887666666665554 344
Q ss_pred HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHHHh
Q 001955 312 VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGRLL 377 (991)
Q Consensus 312 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~~L 377 (991)
+... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+ -|+..+-..+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 233457889999999998888776654432221 245577889999977 4555554443
No 116
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.98 E-value=4.7e-07 Score=95.12 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCC-ccc--cCccccCCCCccEEEccCCCCccccch--hhhc
Q 001955 546 NLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSE-IET--VPSLIGKLKHLRYFNLSHNADIKSLPD--SVSR 620 (991)
Q Consensus 546 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-i~~--lp~~~~~l~~L~~L~L~~~~~~~~lP~--~i~~ 620 (991)
.||.|.+.+...... +....+..+++++..|++.+|. ++. +-..-..+++|++|+|..|..+....- -...
T Consensus 139 ~lk~LSlrG~r~v~~----sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD----SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCc----chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 466666665543221 1245566788999999888875 331 122235688999999988764543221 2346
Q ss_pred ccCCCEEeCCCCCCCcc
Q 001955 621 LLNLQTLDLSCCDDLVE 637 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~ 637 (991)
+++|.+|++++|..+..
T Consensus 215 C~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhhHHHhhhccCchhhc
Confidence 88999999999876543
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00031 Score=82.39 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=110.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--....+ .+ .+........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~-------~pC~~C~~~~ 83 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL-------EPCQECIENV 83 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC-------CchhHHHHhh
Confidence 358899999999999887532 345678899999999999999886311000000 00 0000000000
Q ss_pred HH----ccCCCCcccCHH---HHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEec-CcHHHHH
Q 001955 244 RS----ATNRESEKLDLD---QLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTT-RSERVAR 314 (991)
Q Consensus 244 ~~----l~~~~~~~~~~~---~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTT-R~~~v~~ 314 (991)
.. +..........+ ++++.+... ..+++-++|+|++..-....+..+...+........+|++| +...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00 000000001122 233222211 23566689999998777777888888877655555555444 4444432
Q ss_pred H-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHH
Q 001955 315 I-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIG 374 (991)
Q Consensus 315 ~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~ 374 (991)
. ......+++.+++.++..+.+...+-..+... -.+.+..|++.++|.+ .|+..+-
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 22334788999999999888887654333211 1245678999999866 4444443
No 118
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.93 E-value=0.00011 Score=74.88 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=114.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEE-EEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMW-VCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i 242 (991)
.+++|.+..++.+...+... .......+|++|.|||+-|..+++..--.+.|.+++- .++|...... +.++=
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 45899999999999988752 5668899999999999999888864333455655442 3344332222 11100
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHh--CCce-eEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHHHh-C
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEI--DGKR-YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVARIT-S 317 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~-~ 317 (991)
..+.+.+........ .-++ -+||||+++....+.|..++..+......++.|+.+... .+.... .
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 011111111110000 0123 478999999888899999999998877677765555432 222111 1
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
.-.-+..++|.+++...-+...+-.++-..++ +..+.|++.++|.--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHH
Confidence 11247789999999988888887665543332 455788899888643
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00021 Score=75.60 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=80.5
Q ss_pred ceeecchhHHHHHHH---HhC------CCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh
Q 001955 165 DIIGRDGDKNEIIDR---LLD------SSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV 235 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 235 (991)
.++|.+..+++|.+. ... .+-...+...-+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 378887766665433 211 1111123456788999999999999999986311001011112233221
Q ss_pred HHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC--------hHHHHHHHHHhcCCCCCcEEEEec
Q 001955 236 TTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN--------RDKWLELEALLMNGVSGSKIVVTT 307 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTT 307 (991)
.++.. ..-+ .....+...+... ..-+|++|++..-. .+....+...+........+|+++
T Consensus 83 ~~l~~----~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 1110 0112222223222 23488999996421 122333444444433334555665
Q ss_pred CcHHHHH-------Hh-CCCCceecCCCChHHHHHHHHHHHcc
Q 001955 308 RSERVAR-------IT-SKLPFHALRGLPEDMSWSLFTRMAFE 342 (991)
Q Consensus 308 R~~~v~~-------~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~ 342 (991)
...+... .. .....+.+++++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4432211 01 11235788999999999998877643
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.92 E-value=8.4e-05 Score=83.12 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=98.9
Q ss_pred CCceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV 235 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 235 (991)
.+++.|++..++++.+.+...-.. .....+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 346889999999998876421110 0124566899999999999999999973 2222 222211
Q ss_pred HHHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEecccccc-----------ChHHHHHHHHHhcC-----CC
Q 001955 236 TTIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNE-----------NRDKWLELEALLMN-----GV 298 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~ 298 (991)
..+.. ...+ .. ....+.+.+. -...+.+|+|||++.. +...+..+...+.. ..
T Consensus 199 ~~l~~----~~~g-----~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELVQ----KFIG-----EG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHhH----hhcc-----ch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111 1111 01 1122222222 2345789999999642 11122223333321 12
Q ss_pred CCcEEEEecCcHHHHHH--h---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 299 SGSKIVVTTRSERVARI--T---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 299 ~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
.+..||.||........ . .....+.+++.+.++-.++|..+....... ...++ ..+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDL----EELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCH----HHHHHHcCCCC
Confidence 35678888876443221 1 223468899999999999999877543321 11223 45566666543
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00059 Score=78.08 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=107.9
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc--cc-----------------cccceE
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV--KT-----------------HFNLRM 225 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~-----------------~F~~~~ 225 (991)
+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.++....- .. .|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 48899999999999887532 2356678999999999999988763110 00 000111
Q ss_pred EEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEE
Q 001955 226 WVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIV 304 (991)
Q Consensus 226 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 304 (991)
++..+... ...+...+...+.. -..+++-++|+|+++.-.......+...+....+...+|
T Consensus 92 eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 92 EIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11111000 01111222222221 123566799999998766666777777777655556665
Q ss_pred Eec-CcHHHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 305 VTT-RSERVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 305 vTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
++| +...+... ......+.+.+++.++....+.+.+-..+... -.+.+..|++.++|.+-.+...
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 555 43333322 22234688999999999888887665433221 1245677889999976544443
No 122
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00058 Score=71.79 Aligned_cols=167 Identities=13% Similarity=0.179 Sum_probs=103.0
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
++.+.+|+.++..+...+...+. .-+.+|.|+|-.|.|||.+.+++++... -..+|+++-+.++.+.++.+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 45688999999999998876532 1345679999999999999999998541 235899999999999999999
Q ss_pred HHHccCCCCcc-------cCHHHHHHHHHh--HhC--CceeEEEeccccccC---hHHHHHHHHHhcC-CCCCcEEEEec
Q 001955 243 IRSATNRESEK-------LDLDQLQERLRG--EID--GKRYLLVLDDVWNEN---RDKWLELEALLMN-GVSGSKIVVTT 307 (991)
Q Consensus 243 ~~~l~~~~~~~-------~~~~~l~~~l~~--~L~--~kr~LlVlDdv~~~~---~~~~~~l~~~l~~-~~~gs~iivTT 307 (991)
+.+....+.+. .+..+....+.+ ... ++.++||||+++.-. ..-...+...-.- ..+. -+|+++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEe
Confidence 99985221111 112223333333 122 458999999995431 1111111111011 1233 344444
Q ss_pred CcHHHHHH---hCCCC--ceecCCCChHHHHHHHHH
Q 001955 308 RSERVARI---TSKLP--FHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 308 R~~~v~~~---~~~~~--~~~l~~L~~~~~~~Lf~~ 338 (991)
--..-... +++.. +..++.-+.+|..+++.+
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 33221111 33333 455777888998888766
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.91 E-value=3.2e-05 Score=83.54 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=62.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC--CChHHHHHHHHHHccCCCCcccCH------HHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI--FDVTTIVEKMIRSATNRESEKLDL------DQLQE 261 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~l~~ 261 (991)
.-..++|+|++|.|||||++.+++.... ++|+..+||.+.+. .++.++++.+...+-....+.... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999996433 37999999998865 789999999865443222111111 11122
Q ss_pred HHHhH-hCCceeEEEeccccc
Q 001955 262 RLRGE-IDGKRYLLVLDDVWN 281 (991)
Q Consensus 262 ~l~~~-L~~kr~LlVlDdv~~ 281 (991)
..... -.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 358999999999943
No 124
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.89 E-value=0.00048 Score=73.41 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=73.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCcee
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRY 272 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 272 (991)
-+.++|++|+||||+|+.+++.....+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999977775311111111112444432 12 222222211 12222233322 336
Q ss_pred EEEecccccc---------ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhC--------CCCceecCCCChHHHHHH
Q 001955 273 LLVLDDVWNE---------NRDKWLELEALLMNGVSGSKIVVTTRSERVARITS--------KLPFHALRGLPEDMSWSL 335 (991)
Q Consensus 273 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~--------~~~~~~l~~L~~~~~~~L 335 (991)
+|+||++..- ..+.+..+...+.....+.+||+++.....-.... ....+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 12334455566655555667777765433322211 124688999999999999
Q ss_pred HHHHHcc
Q 001955 336 FTRMAFE 342 (991)
Q Consensus 336 f~~~a~~ 342 (991)
+.+.+-.
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00036 Score=84.30 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=111.1
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...... ..+..-..-+.+..
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 58999999999999887532 2356789999999999999998864211110000 00000000011100
Q ss_pred H-------ccCCCCcccCHHHHHH---HHH-hHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHH
Q 001955 245 S-------ATNRESEKLDLDQLQE---RLR-GEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERV 312 (991)
Q Consensus 245 ~-------l~~~~~~~~~~~~l~~---~l~-~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v 312 (991)
. +.........++++.. .+. .-..+++-++|||+++......+..|...+..-...+.+|++|.+ ..+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0 0000001112333322 111 112355668899999988888888899988876667776666644 334
Q ss_pred HHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 313 ARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 313 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
... ......|++..++.++..+++.+.+-..+... -......|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 332 22345788999999998888877653333211 1234577899999988433
No 126
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.0017 Score=71.07 Aligned_cols=201 Identities=13% Similarity=0.079 Sum_probs=118.1
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-----CChHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-----FDVTT 237 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~ 237 (991)
.+..|+|...-+++.+.+...+ ..+.|.|+-.+|||+|...+.+..+. ..+ ..+++++... .+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHH
Confidence 4456788866777777776533 48999999999999999888874322 233 3457776542 24555
Q ss_pred HHHHHHHHc----cCCCC-------cccCHHHHHHHHHhHh-C--CceeEEEeccccccCh-----HHHHHHHHHh-cCC
Q 001955 238 IVEKMIRSA----TNRES-------EKLDLDQLQERLRGEI-D--GKRYLLVLDDVWNENR-----DKWLELEALL-MNG 297 (991)
Q Consensus 238 ~~~~i~~~l----~~~~~-------~~~~~~~l~~~l~~~L-~--~kr~LlVlDdv~~~~~-----~~~~~l~~~l-~~~ 297 (991)
+++.+...+ +.... ...........+.+.+ . +++.+|+||+++..-. .++..+...+ ...
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 555555444 32210 0112223344444432 2 6899999999975321 1222222222 211
Q ss_pred C----CCcEEEEecCcHHH--HHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc
Q 001955 298 V----SGSKIVVTTRSERV--ARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV 366 (991)
Q Consensus 298 ~----~gs~iivTTR~~~v--~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 366 (991)
. ...-.+|...+.+. ... ++....+.|++++.+|...|..++-.... ....++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCC
Confidence 1 12222332222211 111 12223678999999999999988643211 12278999999999
Q ss_pred hHHHHHHHHHhhcC
Q 001955 367 PLAIRTIGRLLYYN 380 (991)
Q Consensus 367 PLal~~~~~~L~~~ 380 (991)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998664
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.87 E-value=5.2e-05 Score=83.42 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=77.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.++..++..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998742 3578899999999999999998644455778888999998888776654321
Q ss_pred HHccCCCCcccCHH-HHHHHHHhHh--CCceeEEEeccccccChHH-HHHHHHHhc
Q 001955 244 RSATNRESEKLDLD-QLQERLRGEI--DGKRYLLVLDDVWNENRDK-WLELEALLM 295 (991)
Q Consensus 244 ~~l~~~~~~~~~~~-~l~~~l~~~L--~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 295 (991)
.......-.. ...+.+...- .++++++|+|++...+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1100000001 1112222221 1468999999998776443 344444443
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00028 Score=71.17 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=99.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+|||.++-++.+.=++..... ..+...-+.++|++|.||||||.-+++. ....+ -++.....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~l---------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPAL---------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----Eecccccc----------
Confidence 4599998888888777664332 2456788999999999999999999984 22222 11111111
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcC--------CCCCcE-----------EE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMN--------GVSGSK-----------IV 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------ii 304 (991)
....++...+.. |+ ..=++++|.+.......-+-+.....+ .++++| |=
T Consensus 89 ----------eK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 89 ----------EKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ----------cChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 111222222222 22 334556687765442221222222211 133443 34
Q ss_pred EecCcHHHHHHhC--CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 305 VTTRSERVARITS--KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 305 vTTR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
-|||.-.+..... ..-+.+++..+.+|-.+...+.|..-+-.. -.+.+.+|+++..|-|--.
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHH
Confidence 5888543332221 122567888899999999888774433322 2356799999999999543
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00067 Score=77.50 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=113.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|-+..++.+...+.... -..+..++|+.|+||||+|+.+++..--...-+. ..+..-..-..+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 358998888899988886431 3456789999999999999987753110000000 0000000000000
Q ss_pred HHcc-----CCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSAT-----NRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l~-----~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
.... .........+++.+.+... ..+++-++|+|++..-.......+...+....+.+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000 0000111233443333221 12456688999998877777888888887766677777777653 221
Q ss_pred H-HhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 314 R-ITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 314 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
. .......+++.+++.++..+.+.+.+-..+... -.+.+..|++.++|.+--+...
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 1 112234788999999999888877665443221 2356688999999998544444
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00077 Score=76.65 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=107.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc---------------------cccc
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK---------------------THFN 222 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~F~ 222 (991)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 358999999999999887531 23667899999999999998887631100 0011
Q ss_pred ceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCc
Q 001955 223 LRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGS 301 (991)
Q Consensus 223 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 301 (991)
.+++........ .+..++.+.+.. ...+++-++|+|++..-.......+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111110000000 111111111111 122566788999997665556667777777655566
Q ss_pred EEEEecCc-HHHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHH
Q 001955 302 KIVVTTRS-ERVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIG 374 (991)
Q Consensus 302 ~iivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~ 374 (991)
.+|++|.. ..+... ......+++.++++++....+...+-..+... -.+.+..|++.++|.+ .|+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67666643 222221 22234688999999998888877654333211 1356688999999966 4444443
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=4.9e-06 Score=94.61 Aligned_cols=105 Identities=30% Similarity=0.425 Sum_probs=72.6
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
+..+++|..|++.+|.|..+...+..+++|++|++++|. ++.+.. +..+..|+.|++++|. +..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 466788888888888888776557778888888888887 666654 7777778888888853 44443 3555778888
Q ss_pred EeeccccccCcCCcC-CCCCCCCCcCCcccc
Q 001955 651 LAIESCLSLTDMPNG-LGQLTNLRTLPLFMV 680 (991)
Q Consensus 651 L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~ 680 (991)
+++++| .+..+... +..+.+|+.+.+..+
T Consensus 167 l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcc-hhhhhhhhhhhhccchHHHhccCC
Confidence 888877 33344332 456666776666544
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00067 Score=79.87 Aligned_cols=196 Identities=13% Similarity=0.170 Sum_probs=113.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--. ..+... ...+......+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 358899999999988887532 23467899999999999999998742111 110000 01111122222222
Q ss_pred HHccCC-----CCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHH
Q 001955 244 RSATNR-----ESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVA 313 (991)
Q Consensus 244 ~~l~~~-----~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~ 313 (991)
.....+ .......+++.+.+... ..+++-++|+|+++.-....+..+...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 00112233333333221 12455688999998777677888888887655556655555443 332
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
.. ......+++..++.++....+.+.+...+... -.+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 22234677889999888887777654332211 1245688999999987655443
No 133
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00036 Score=70.81 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=80.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
+.+.|||++|+|||+|++.+++... . .++. ..+. . + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 6789999999999999999887421 1 1111 0000 0 0 001 133
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-------HHHHhCCCCceecCCCChHHHHHHHHHHHccCC
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-------VARITSKLPFHALRGLPEDMSWSLFTRMAFEQG 344 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 344 (991)
-++++||+..-.......+...+. ..|..||+|++... ....+....+++++++++++-..++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 578899996321112222222222 24668999988532 222334445899999999998888887765332
Q ss_pred CCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 345 SEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 345 ~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
-.. -+++..-|++++.|.--.+.-+
T Consensus 165 l~l----~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 VTI----SRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCC----CHHHHHHHHHHccCCHHHHHHH
Confidence 111 1356677888887766544433
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.9e-05 Score=56.87 Aligned_cols=39 Identities=36% Similarity=0.585 Sum_probs=23.3
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccc
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLP 615 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP 615 (991)
+|++|++++|.|+.+|+.+++|++|++|++++|. +.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666556666666666666665 44443
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00024 Score=77.86 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=85.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++.. .. ....++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccH-HHHHHHH
Confidence 45899999999999988742 135678889999999999999998742 11 123444433 111 1111111
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHH-HH-hCCCC
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVA-RI-TSKLP 320 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~-~~-~~~~~ 320 (991)
.... ... .+.+.+-++|+||+... .......+...+.....++++|+||...... .. .+...
T Consensus 89 ~~~~-------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFA-------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHH-------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1110 000 01134557889999765 3333344555565555678899988754311 11 11223
Q ss_pred ceecCCCChHHHHHHHHH
Q 001955 321 FHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~ 338 (991)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 566667777777665543
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.80 E-value=0.00068 Score=68.18 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=72.3
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
.-++++|.|..++.|++-...=.. .....-+.+||..|.|||++++++.+....++ .--|.+.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~----------- 87 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVS----------- 87 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEEC-----------
Confidence 345699999999888764321111 12445677899999999999999987321111 1112221
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccc-cChHHHHHHHHHhcCC---CCCcEEEEecCc
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWN-ENRDKWLELEALLMNG---VSGSKIVVTTRS 309 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTTR~ 309 (991)
..+..+...+.+.|+. +..||+|++||+.= +....+..+...+..+ .|...+|.+|.+
T Consensus 88 --------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 88 --------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred --------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 1122344555555553 35799999999842 2345667777777553 344455555544
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.00022 Score=87.37 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=84.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc----cccceEE-EEecCCCChHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT----HFNLRMW-VCVSDIFDVTTI 238 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~w-v~~s~~~~~~~~ 238 (991)
+.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+++...... -....+| +.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----
Confidence 458999999999999887542 23456999999999999999987321110 1122232 22221000
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHh-CCceeEEEeccccccC-------hHHHHH-HHHHhcCCCCCcEEEEecCc
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEI-DGKRYLLVLDDVWNEN-------RDKWLE-LEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTTR~ 309 (991)
+......-.+.+...+.+.- .+++.+|++|++..-. ..+-.. +...+.. ..-++|-||..
T Consensus 257 ---------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~ 325 (852)
T TIGR03345 257 ---------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTW 325 (852)
T ss_pred ---------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCH
Confidence 00000001122222222221 2468999999986531 111111 2222222 23456666664
Q ss_pred HHHHHHh-------CCCCceecCCCChHHHHHHHHHHH
Q 001955 310 ERVARIT-------SKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 310 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.+..... ..-..+.+++++.++..+++....
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 3321111 122378999999999999975443
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00072 Score=76.66 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=90.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
...+.|+|.+|+|||+|++++++. ..... ..++|++. .++...+...+... ..+... +.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFK----EKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHH----HHHH
Confidence 456899999999999999999984 32222 23456643 33444455444321 222222 2232
Q ss_pred CceeEEEeccccccChH-HH-HHHHHHhcCC-CCCcEEEEecCcH-HHHH--------HhCCCCceecCCCChHHHHHHH
Q 001955 269 GKRYLLVLDDVWNENRD-KW-LELEALLMNG-VSGSKIVVTTRSE-RVAR--------ITSKLPFHALRGLPEDMSWSLF 336 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTTR~~-~v~~--------~~~~~~~~~l~~L~~~~~~~Lf 336 (991)
+ .-+|||||++..... .+ ..+...+... ..|..+|+|+... .... .+.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348899999753211 11 2233322211 1345677777642 2111 1222236789999999999999
Q ss_pred HHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 337 TRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.+.+...+... -.++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 98876543222 13566778888888765433
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00091 Score=78.79 Aligned_cols=176 Identities=13% Similarity=0.164 Sum_probs=111.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc---------------------ccccc
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV---------------------KTHFN 222 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~F~ 222 (991)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 358999999999999987531 3456889999999999999887763110 01122
Q ss_pred ceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCC
Q 001955 223 LRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGV 298 (991)
Q Consensus 223 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 298 (991)
. ..+..+. ....+++...+.+. ..+++=++|+|++..-+...+..+...+....
T Consensus 92 ~-~~ld~~~---------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAAS---------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccc---------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 1111111 11123333222211 22455588999998877778888888888766
Q ss_pred CCcEEEEec-CcHHHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 299 SGSKIVVTT-RSERVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 299 ~gs~iivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
..+.+|++| ....+... .....++++.+++.++....+.+.+-..+... -.+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 666766555 44444332 22334788999999999988887665443221 1245688999999966433
No 140
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00012 Score=79.81 Aligned_cols=74 Identities=22% Similarity=0.498 Sum_probs=53.5
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
+..+.+++.|++++|.++.+|. + -.+|+.|.+++|..+..+|..+. .+|+.|++++|..+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 3456888899999998888873 2 23688889888776777887553 57888888888777777754 555
Q ss_pred Eeecc
Q 001955 651 LAIES 655 (991)
Q Consensus 651 L~l~~ 655 (991)
|++..
T Consensus 117 L~L~~ 121 (426)
T PRK15386 117 LEIKG 121 (426)
T ss_pred EEeCC
Confidence 55543
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0012 Score=74.92 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=92.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCcccccc-cc-ceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTH-FN-LRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
..-+.|+|.+|+|||+||+++++. .... .. .++|++. .++..++...+... ..+. +.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 345999999999999999999984 3332 22 3556653 34556665555321 1222 222333
Q ss_pred CceeEEEeccccccC-hHHH-HHHHHHhcCC-CCCcEEEEecC-cHHHH--------HHhCCCCceecCCCChHHHHHHH
Q 001955 269 GKRYLLVLDDVWNEN-RDKW-LELEALLMNG-VSGSKIVVTTR-SERVA--------RITSKLPFHALRGLPEDMSWSLF 336 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~~-~~gs~iivTTR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf 336 (991)
.+.-+|++||+.... ...+ ..+...+... ..|..||+||. .+.-. ..+.......+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999996431 1111 1222222111 13446888874 33221 11233347789999999999999
Q ss_pred HHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 337 TRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
.+.+...+... -.++..-|++.+.|.--.+
T Consensus 273 ~~~~~~~~~~l----~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGEL----PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCC----CHHHHHHHHhccccCHHHH
Confidence 88875432211 1356778888887764433
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0014 Score=76.37 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=112.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+- +.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 358999999999999987532 3457889999999999999999874211100000 000000000 1111
Q ss_pred HHccC-----CCCcccCHHHHHHHH---Hh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc-HHHH
Q 001955 244 RSATN-----RESEKLDLDQLQERL---RG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS-ERVA 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l---~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~-~~v~ 313 (991)
..-.. ........+++.+.. .. -..+++-++|+|++..-+...+..+...+....+.+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000112233333222 11 12356668999999877777788888888766666777666644 3333
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
.. ......+++.+++.++..+.+.+.+...+... -.+.+..|++.++|.+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 22 22233688999999999888887765443221 235567789999998754433
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00082 Score=78.98 Aligned_cols=196 Identities=14% Similarity=0.177 Sum_probs=110.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.+++..--....+ ...+.....-..|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 358999988899998887531 235678999999999999998886311000000 00000001111111
Q ss_pred HHcc-------CC-CCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC-cHHHH
Q 001955 244 RSAT-------NR-ESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR-SERVA 313 (991)
Q Consensus 244 ~~l~-------~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v~ 313 (991)
..-. +. .....+..++...+... ..+++-++|+|+++.-+......+...+......+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000 00 00011122222222211 224556889999987777777788888877656666665554 34443
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch-HHHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP-LAIRTIGR 375 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lal~~~~~ 375 (991)
.. ......+++.+++.++....+...+-..+... -.+....|++.++|.. -|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 22234678899999998887776554333221 1245678899999865 55555433
No 144
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.69 E-value=0.00013 Score=68.38 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=53.0
Q ss_pred EEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC-cee
Q 001955 194 IPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG-KRY 272 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~-kr~ 272 (991)
|.|+|++|+||||+|+.++++. .. ..+.++.+...+. ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999842 21 1234443221100 1111222333333332223 489
Q ss_pred EEEeccccccChHH-----------HHHHHHHhcCCC---CCcEEEEecCc
Q 001955 273 LLVLDDVWNENRDK-----------WLELEALLMNGV---SGSKIVVTTRS 309 (991)
Q Consensus 273 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTTR~ 309 (991)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999997643332 344444454433 24567777775
No 145
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00083 Score=76.02 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
..-+.|+|++|+|||+||+++++.. ...-..+++++. ..+...+...+... .. ..+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 4568899999999999999999842 222233455542 33444444444311 11 12333332 3
Q ss_pred eeEEEeccccccChHHH--HHHHHHhcCC-CCCcEEEEecCcH-H--------HHHHhCCCCceecCCCChHHHHHHHHH
Q 001955 271 RYLLVLDDVWNENRDKW--LELEALLMNG-VSGSKIVVTTRSE-R--------VARITSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
.-+|++||+.......| +.+...+... ..|..||+||... . +...+.....+.+.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888899865422222 2222222110 1355788888542 1 122233335788999999999999988
Q ss_pred HHccCCCCCCChhHHHHHHHHHhhcCCc
Q 001955 339 MAFEQGSEPKDSKLVQIGKDVVGKCAGV 366 (991)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 366 (991)
++-..+..- + .++..-|++.+.|.
T Consensus 283 k~~~~~~~l-~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRI-E---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCC-C---HHHHHHHHHhcCCC
Confidence 875443211 1 24445566666543
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.64 E-value=0.0011 Score=76.20 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=92.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
..-+.|+|.+|+|||+||+++++. ....+ ..++|++.. .+...+...+... ..+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHHH----HHHHh
Confidence 456899999999999999999984 33333 234455442 3334444443211 12222 22333
Q ss_pred CceeEEEeccccccChHH-H-HHHHHHhcC-CCCCcEEEEecCcHH---------HHHHhCCCCceecCCCChHHHHHHH
Q 001955 269 GKRYLLVLDDVWNENRDK-W-LELEALLMN-GVSGSKIVVTTRSER---------VARITSKLPFHALRGLPEDMSWSLF 336 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf 336 (991)
+.-+|||||+....... + ..+...+.. ...|..||+||.... +...+.....+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999996532111 1 223222211 113445788776432 1222333347889999999999999
Q ss_pred HHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 337 TRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.+.+-..+... -.++..-|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGIDL----PDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCCC----CHHHHHHHHcCcCCCHHHHH
Confidence 99876432211 13567888999888765443
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00063 Score=82.84 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=83.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc---ccccc-cceEEEEecCCCChHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED---VKTHF-NLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 239 (991)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 358999999999999887542 23457999999999999999987321 11111 233332 1 11111
Q ss_pred HHHHHHccCCCCcccCHHHHHHHHHhHh-CCceeEEEeccccccC---------hHHHHHHHHHhcCCCCCcEEEEecCc
Q 001955 240 EKMIRSATNRESEKLDLDQLQERLRGEI-DGKRYLLVLDDVWNEN---------RDKWLELEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTTR~ 309 (991)
+.. .. -..+.++....+.+.+ +.++.+|++|+++.-. .+.-..+...+.. + .-++|-+|..
T Consensus 250 ---~a~---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LAG---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTY 320 (731)
T ss_pred ---hhh---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCH
Confidence 100 00 0012222222233322 2457899999996321 1111223333322 1 2345555543
Q ss_pred HHHHHH-------hCCCCceecCCCChHHHHHHHHHHH
Q 001955 310 ERVARI-------TSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 310 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.+.... ...-..+.+++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221111 1112367899999999999998654
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0025 Score=74.56 Aligned_cols=192 Identities=11% Similarity=0.142 Sum_probs=109.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+..--...-+ ..++.....-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 458999999999999887532 345677899999999999988876311000000 00111111111111
Q ss_pred HHccCC-----CCcccCHHHHH---HHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC-cHHHH
Q 001955 244 RSATNR-----ESEKLDLDQLQ---ERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR-SERVA 313 (991)
Q Consensus 244 ~~l~~~-----~~~~~~~~~l~---~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR-~~~v~ 313 (991)
.....+ .......+++. ..+.. -..+++-++|+|++..-....+..+...+........+|++|. ...+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111000 00111223222 22221 1235667889999987766777788887766555555555553 33332
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.. ......+++.+++.++....+...+-..+...+ .+.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 122346788999999988888876644332211 2456788889988775443
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0022 Score=70.12 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=94.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
....+.|||..|.|||.|++++.+ ...........+.+ +.+.+...++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999998 34444443333333 233444444444321 1223344444
Q ss_pred ceeEEEeccccccC-hHHH----HHHHHHhcCCCCCcEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHH
Q 001955 270 KRYLLVLDDVWNEN-RDKW----LELEALLMNGVSGSKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSL 335 (991)
Q Consensus 270 kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 335 (991)
.-=++++||++--. .+.| ..+...+.. .|-.||+|++.. ++...+...-.+++.+.+.+.....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33488899996521 1222 222223333 333899999753 2333344455889999999999999
Q ss_pred HHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 336 FTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 336 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
+.+++...+-...+.-..-++.++-.-..-+.=|+..+
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99877655443333333344444444333344444333
No 150
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00058 Score=76.44 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred ceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
++.|.+..++++.+.+.-.-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------
Confidence 4679999999888877422110 0123456789999999999999999984 33333 1221111
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hHHHHHHHHH---hcC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEAL---LMN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~---l~~--~~~gs 301 (991)
+... ..+ .....+...+.....+.+.+|+||+++..- ......+... +.. ...+.
T Consensus 253 L~~k----~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LIQK----YLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhhh----hcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1111 110 011122222333334578899999985310 0111112222 211 13466
Q ss_pred EEEEecCcHHHHHHh-----CCCCceecCCCChHHHHHHHHHHHccC
Q 001955 302 KIVVTTRSERVARIT-----SKLPFHALRGLPEDMSWSLFTRMAFEQ 343 (991)
Q Consensus 302 ~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 343 (991)
+||+||...+..... .....+.++..+.++..++|..+....
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 888888866544331 123477899999999999999876443
No 151
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=4.6e-05 Score=90.31 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=81.8
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccc--hhhh
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLP--DSVS 619 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP--~~i~ 619 (991)
..+|.||+|.+.+-..... .+...+.++++|+.||+|+++++.+ ..+++|++|+.|.+++=. +...+ ..+.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~-----dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDND-----DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCceecch-----hHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHh
Confidence 4689999999877544332 2567789999999999999999988 779999999999998755 33222 3578
Q ss_pred cccCCCEEeCCCCCCCcccccc-------ccccccCcEEeecccc
Q 001955 620 RLLNLQTLDLSCCDDLVELPRD-------IGKMVSLRHLAIESCL 657 (991)
Q Consensus 620 ~L~~L~~L~L~~~~~~~~lp~~-------i~~L~~L~~L~l~~~~ 657 (991)
+|++|++||+|..... .-+.. -..|++||.||.+++.
T Consensus 218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 9999999999984432 22221 1248999999999874
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0031 Score=68.00 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=113.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc-------------cccccceEEEEecC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV-------------KTHFNLRMWVCVSD 231 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s~ 231 (991)
+++|.+..++.+...+..+. -.....++|+.|+||+++|..+++..-- ...+.-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58899999999999887532 2468899999999999999777653110 11122234443210
Q ss_pred CCChHHHHHHHHHHcc--CCCCcccCHHHHHHHHHhHh-----CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEE
Q 001955 232 IFDVTTIVEKMIRSAT--NRESEKLDLDQLQERLRGEI-----DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIV 304 (991)
Q Consensus 232 ~~~~~~~~~~i~~~l~--~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 304 (991)
..+...+-.+.++..+ ......-.++++. .+.+.+ .+.+-++|+|+++..+......+...+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0011101111111211 1111122233332 233222 3566789999998877778888888887655 44566
Q ss_pred EecCcH-HHHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 305 VTTRSE-RVARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 305 vTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
++|.+. .+... .+....+.+.++++++..+.+.+....... ......++..++|.|..+...
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHH
Confidence 555543 33222 233347889999999999999886421110 111357899999999766543
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0023 Score=69.33 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=67.5
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHH-HHH-hCCCCceecCCCChHHHHHHHHHHHccCCCC
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERV-ARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSE 346 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 346 (991)
+++-++|+|+++.-+......+...+.....++.+|+||.+... ... .+.-..+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 34445577999988888888899888877677888888877543 211 2223468899999999998887653 111
Q ss_pred CCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
..+.+..++..++|.|+.+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1123467789999999765544
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00067 Score=83.64 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=83.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc---ccccc-cceEEEEecCCCChHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED---VKTHF-NLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 239 (991)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 348999999999999998542 22456999999999999999887421 11111 234442 1 111111
Q ss_pred HHHHHHccCCCCcccCHHH-HHHHHHhHhCCceeEEEeccccccC-------hHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 240 EKMIRSATNRESEKLDLDQ-LQERLRGEIDGKRYLLVLDDVWNEN-------RDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~-l~~~l~~~L~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
.+... ..+.++ +...+.+.-..++.+|++|++..-- ......+..+....+ .-++|.+|...+
T Consensus 248 -------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred -------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 11111 111222 2222322223568999999995210 011122222222222 245666665544
Q ss_pred HHHH-------hCCCCceecCCCChHHHHHHHHHH
Q 001955 312 VARI-------TSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 312 v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
.... ......+.++..+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 112235678888888888887653
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0016 Score=75.08 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=90.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
..+.|+|..|+|||.|++++++. ....+ ..++|++. .++..++...+... ..+. +++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYR- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhh-
Confidence 45899999999999999999984 32222 23455543 34444444443211 1122 222232
Q ss_pred ceeEEEeccccccCh-HHHHH-HHHHhcCC-CCCcEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHHHH
Q 001955 270 KRYLLVLDDVWNENR-DKWLE-LEALLMNG-VSGSKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSLFT 337 (991)
Q Consensus 270 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (991)
+-=+|||||+..... ..|.. +...+... ..|..|||||... .+...+...-++.+++.+.+.-.+++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 235788999965422 22322 22222211 2355688888752 222333444578999999999999999
Q ss_pred HHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 338 RMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
+++...+-... .++.+-|++++.+..-.|
T Consensus 457 kka~~r~l~l~----~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLNAP----PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCCCC----HHHHHHHHHhccCCHHHH
Confidence 88765433221 355666777766554333
No 156
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00061 Score=64.59 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=47.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc-
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK- 270 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k- 270 (991)
..+.|+|++|+||||+|+.++..... ....++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999984222 2123555555443332222211 111111111112222233333333333
Q ss_pred eeEEEeccccccC
Q 001955 271 RYLLVLDDVWNEN 283 (991)
Q Consensus 271 r~LlVlDdv~~~~ 283 (991)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997753
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.51 E-value=0.0015 Score=74.41 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=90.6
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCcccc---ccccceEEEEecCCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK---THFNLRMWVCVSDIF 233 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~ 233 (991)
.++.|.+..++++.+.+...-.. .-...+-+.++|++|.|||++|+++++..... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45778999999988876421100 01234568999999999999999999842211 01123344444321
Q ss_pred ChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEeccccccC-------hHH-----HHHHHHHhcCC--C
Q 001955 234 DVTTIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNEN-------RDK-----WLELEALLMNG--V 298 (991)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 298 (991)
+++. ...+. .......+.+..++. -.+++.+|+||+++..- ..+ ..++...+... .
T Consensus 261 ---eLl~----kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---ELLN----KYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hhcc----cccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 1111 11000 000111222222222 12578999999996420 011 12233333221 2
Q ss_pred CCcEEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHc
Q 001955 299 SGSKIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAF 341 (991)
Q Consensus 299 ~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~ 341 (991)
.+..||.||...+.... ......+.++..+.++..++|..+..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 34556667765543221 12234688999999999999998763
No 158
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00035 Score=73.60 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=59.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
..+.++|.+|+|||+||.++++.. ...-..++++++ .+++..+........ ..+..++. +.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~~~----~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENEII----RSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHHHH----HHhcCCC
Confidence 358899999999999999999853 222234556653 345555554443211 11222232 3333333
Q ss_pred eEEEeccccccChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 272 YLLVLDDVWNENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
||||||+..+...+|.. +...+... ..|..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996543445543 33333221 245679999874
No 159
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0059 Score=61.22 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=106.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe-cCCCChHHHHHHHHHHccCCCCcccCHH----HHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV-SDIFDVTTIVEKMIRSATNRESEKLDLD----QLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~----~l~~~l~ 264 (991)
+-+++.++|.-|.|||.++|+...... =+.++-|.+ .+..+...+...++..+..+. ..... +....+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 556999999999999999994443111 012222333 345567788888888877522 22222 3333333
Q ss_pred hHh-CCce-eEEEeccccccChHHHHHHHHHhcCCCCCc---EEEEecCc---H----HHHHH-hCCCCc-eecCCCChH
Q 001955 265 GEI-DGKR-YLLVLDDVWNENRDKWLELEALLMNGVSGS---KIVVTTRS---E----RVARI-TSKLPF-HALRGLPED 330 (991)
Q Consensus 265 ~~L-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTTR~---~----~v~~~-~~~~~~-~~l~~L~~~ 330 (991)
... +++| ..++.||..+...+..+.++....-...++ +|+..-.. + .+... -....+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 999999998876666666554432221222 23332221 1 11111 111223 899999999
Q ss_pred HHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 331 MSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 331 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
+...++..+..+...+..- --.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHH
Confidence 9988888876555332211 1235567889999999999988765
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=0.00013 Score=52.61 Aligned_cols=39 Identities=41% Similarity=0.602 Sum_probs=27.2
Q ss_pred CCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccc
Q 001955 598 KHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVEL 638 (991)
Q Consensus 598 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~l 638 (991)
++|++|++++|. +..+|..+++|++|++|++++|. +..+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 467888888887 77777778888888888888753 4443
No 161
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.46 E-value=0.0052 Score=75.40 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=84.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....| +-+.++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcC---
Confidence 458899999999888764221000113357999999999999999999984 33233 1222333223222211
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChH----HHHHHHHHhcC--------C-------CCCcEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRD----KWLELEALLMN--------G-------VSGSKIV 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~ii 304 (991)
. ...........+.+.+...- .++-+|+||.++..... ....+...+.. . .....+|
T Consensus 392 -~--~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 -H--RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred -C--CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 00000111122333343332 23347899999664221 11223332221 0 0233445
Q ss_pred EecCcHHH-H-HHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 305 VTTRSERV-A-RITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 305 vTTR~~~v-~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.||..... . ...+...++++.+++.++-.+++..+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55544321 1 111223477889999888877776543
No 162
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=1.2e-05 Score=82.93 Aligned_cols=249 Identities=22% Similarity=0.217 Sum_probs=127.7
Q ss_pred hhhhccCCcccEEEccCCCcc-----ccCccccCCCCccEEEccCCC---Cccccchh-------hhcccCCCEEeCCCC
Q 001955 568 NKIVSSFKCLRTLNLSNSEIE-----TVPSLIGKLKHLRYFNLSHNA---DIKSLPDS-------VSRLLNLQTLDLSCC 632 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~---~~~~lP~~-------i~~L~~L~~L~L~~~ 632 (991)
......+..++.|+|++|.+. .+-+.+.+.++|+.-++++-- ...++|+. +-..++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344567788888888888775 344566777788888887632 12345543 345668888888886
Q ss_pred CCCccccc----cccccccCcEEeeccccccCcCCcCCCCCC-CCCcCCccccCCcCCcccccCcccCCceeEE--cccC
Q 001955 633 DDLVELPR----DIGKMVSLRHLAIESCLSLTDMPNGLGQLT-NLRTLPLFMVGRKTQLSQLNGLNKLRGSLRI--ENLG 705 (991)
Q Consensus 633 ~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~-~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i--~~~~ 705 (991)
-.-...++ -+..++.|++|++.+| .++. .+=+.+. .|.+|.. + +..++-.+|+ .+.. +.+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~--~ag~~l~~al~~l~~--~------kk~~~~~~Lr-v~i~~rNrle 170 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNC-GLGP--EAGGRLGRALFELAV--N------KKAASKPKLR-VFICGRNRLE 170 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcC-CCCh--hHHHHHHHHHHHHHH--H------hccCCCcceE-EEEeeccccc
Confidence 54333333 2456778888888877 2221 1100100 1122210 0 0000111111 0000 0011
Q ss_pred Cch-hhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCc-----cCcccccccccCceee
Q 001955 706 EKQ-NSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIR-----LSSWLSSVTNLTMIDI 779 (991)
Q Consensus 706 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L 779 (991)
+-. .+....+...+.|+.+.++.+...+. -......++.-+++|+.|++..+..+. +...++.+++|+.|++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~e--G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPE--GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCc--hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 111 22223344456677777666543110 001234455566777777777765432 2233445677888888
Q ss_pred ccccccccC-----C-CCCCCCccceeeccccccceeccCCC----CCCCCCCCCccEEeecccc
Q 001955 780 SICIKCQYI-----P-ELDQLPSLKRLRLFKLSALEYISSSS----PPSTTIFPSLEELRIFACP 834 (991)
Q Consensus 780 ~~~~~~~~l-----p-~l~~l~~L~~L~l~~~~~l~~i~~~~----~~~~~~~~~L~~L~l~~~~ 834 (991)
++|.....= . --...|+|+.|.+.+ +.+.... ......-|.|+.|.+++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g----NeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAG----NEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCc----chhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 888533210 0 012367888888777 4442211 1122346788888887773
No 163
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.45 E-value=0.0019 Score=71.87 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=96.5
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.+..+++|.+.+.-.-.. .-...+-+.++|++|.|||++|+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 35789998888888766421100 0124567889999999999999999984 22222 22211 1
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChH---HHHHHHHHhcC--CCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRD---KWLELEALLMN--GVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~g 300 (991)
.+.... .+ .....+.+.+.......+.+|+||+++.. +.. ....+...+.. ...+
T Consensus 214 ~l~~k~----~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKY----LG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHh----cc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111111 11 01122222333333457899999998531 001 11122222221 2245
Q ss_pred cEEEEecCcHHHHHH--h---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERVARI--T---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..||+||...+.... . .....+.++..+.++..++|..+....... ..-++ .++++.+.|.-
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCH----HHHHHHcCCCC
Confidence 678888886543321 1 223467888888888888888765433221 12233 45566665554
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0017 Score=77.96 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=85.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccc-----ccceEEEEecCCCChHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH-----FNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~ 238 (991)
+.++||+.+++++++.|..... .-+.++|.+|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 3589999999999998886321 234689999999999999988631 1111 13344421 11111
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHh-CCceeEEEecccccc--------ChHHHHHHHHHhcCCCCCcEEEEecCc
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEI-DGKRYLLVLDDVWNE--------NRDKWLELEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTTR~ 309 (991)
+ .+.. -..+.+.....+.+.+ +..+.+|++|++..- ...+...+..++...+ .-++|-+|..
T Consensus 254 ----l---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~ 324 (758)
T PRK11034 254 ----L---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTY 324 (758)
T ss_pred ----h---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCCh
Confidence 1 1111 0111222222222222 345789999999632 1122333333333222 3345555554
Q ss_pred HHHHHHh-------CCCCceecCCCChHHHHHHHHHHH
Q 001955 310 ERVARIT-------SKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 310 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.+..... ..-..+.+++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4322111 112368899999999999988654
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.0011 Score=77.45 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-++++|-++.++++..++....-. ....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998754321 123468999999999999999999974
No 166
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=8e-05 Score=75.05 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=54.0
Q ss_pred hhhccCCcccEEEccCCCcc---ccCccccCCCCccEEEccCCCC---ccccchhhhcccCCCEEeCCCCCCC--ccccc
Q 001955 569 KIVSSFKCLRTLNLSNSEIE---TVPSLIGKLKHLRYFNLSHNAD---IKSLPDSVSRLLNLQTLDLSCCDDL--VELPR 640 (991)
Q Consensus 569 ~~~~~~~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~~~~---~~~lP~~i~~L~~L~~L~L~~~~~~--~~lp~ 640 (991)
.+-..++.++.|||.+|.|+ ++-..+.+||+|++|+|+.|.+ ++.+| ..+.+|++|-|.+ +.+ .....
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s 140 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTS 140 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhh
Confidence 34456788888888888876 3444567888888888888863 23344 2456777777766 322 22334
Q ss_pred cccccccCcEEeeccc
Q 001955 641 DIGKMVSLRHLAIESC 656 (991)
Q Consensus 641 ~i~~L~~L~~L~l~~~ 656 (991)
.+..++.++.|.++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 4556666666666655
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.0011 Score=67.60 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=73.9
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE--e--cC-----CCCh
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC--V--SD-----IFDV 235 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~--~--s~-----~~~~ 235 (991)
.+.+|......+..++.+ ..+|.+.|.+|.|||+||.++..+.-..+.|+.++.+. + .+ +-+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 366788888888888863 23899999999999999988886422234454333221 1 11 0111
Q ss_pred HHH----HHHHHHHccCCCCcccCHHHHHHHH-----------HhHhCCcee---EEEeccccccChHHHHHHHHHhcCC
Q 001955 236 TTI----VEKMIRSATNRESEKLDLDQLQERL-----------RGEIDGKRY---LLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 236 ~~~----~~~i~~~l~~~~~~~~~~~~l~~~l-----------~~~L~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
.+- +.-+...+..- ...+.+...+ ..+++++.+ +||+|++.+.+. .++...+...
T Consensus 128 ~eK~~p~~~pi~D~L~~~----~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~ 200 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRR----LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRL 200 (262)
T ss_pred HHHHHHHHHHHHHHHHHH----hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhc
Confidence 111 11111111100 0001111111 135667655 999999988755 3445555556
Q ss_pred CCCcEEEEecCc
Q 001955 298 VSGSKIVVTTRS 309 (991)
Q Consensus 298 ~~gs~iivTTR~ 309 (991)
+.+|++|+|--.
T Consensus 201 g~~sk~v~~GD~ 212 (262)
T PRK10536 201 GENVTVIVNGDI 212 (262)
T ss_pred CCCCEEEEeCCh
Confidence 789999987553
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.34 E-value=0.002 Score=79.74 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=36.6
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++||+.++++++..|.... ..-+.++|.+|+|||++|+.++..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999997542 234558999999999999988874
No 169
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.28 E-value=6.1e-05 Score=85.73 Aligned_cols=107 Identities=30% Similarity=0.451 Sum_probs=83.1
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
..+..+..+++..|.+..+-..++.+.+|.+|++.+|. +..+...+..+++|++|++++| .++.+ ..+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccc-cchhhccchhhh
Confidence 35566777778888888865668899999999999999 7777666888999999999995 46665 347778889999
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCccccCCc
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 683 (991)
++.+| .+..+ .++..+.+|+.+++..+...
T Consensus 146 ~l~~N-~i~~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 146 NLSGN-LISDI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccC-cchhc-cCCccchhhhcccCCcchhh
Confidence 99998 44444 35566888888888665443
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0087 Score=64.29 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=67.1
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCC
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSE 346 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 346 (991)
+++-++|+|+++..+...-..+...+.....++.+|++|.+.+ +... .+.-..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 5567899999988777777778888887777888888777543 2222 2223467889999999988886531 1
Q ss_pred CCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
. ...+..++..++|.|+.+..+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1225678999999998765443
No 171
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=1.1e-05 Score=81.04 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=47.5
Q ss_pred ccCCCCCCcceEEEeeeCCCc---cCcccccccccCceeeccccccccCC-----CCCCCCccceeeccccccceeccCC
Q 001955 743 EGLKPHQNLKELTIIRFGGIR---LSSWLSSVTNLTMIDISICIKCQYIP-----ELDQLPSLKRLRLFKLSALEYISSS 814 (991)
Q Consensus 743 ~~l~~~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~~~~~~~lp-----~l~~l~~L~~L~l~~~~~l~~i~~~ 814 (991)
..+..-.+|+.|.++.+.|-+ +.-.+.+++.|..|+|+.|......- .++ ++|+.|++++|... +...
T Consensus 228 ~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrn--l~~s 303 (419)
T KOG2120|consen 228 NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRN--LQKS 303 (419)
T ss_pred HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhh--hhhh
Confidence 333444566666666655421 11224578888888888886543211 122 56777777775431 1111
Q ss_pred CCCC-CCCCCCccEEeeccccccc
Q 001955 815 SPPS-TTIFPSLEELRIFACPELK 837 (991)
Q Consensus 815 ~~~~-~~~~~~L~~L~l~~~~~L~ 837 (991)
.... ...+|+|..|++++|..++
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred HHHHHHHhCCceeeeccccccccC
Confidence 1111 1146666666666665444
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.25 E-value=0.0035 Score=73.94 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=96.0
Q ss_pred CceeecchhHHHHHHH---HhCCCCC---CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDR---LLDSSES---EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.++.++++.+. +.....- .....+-|.++|++|+|||++|+.++... . +-|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----HH
Confidence 3477877655555444 3322110 01234568999999999999999998742 1 12333321 11
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC----------hHHHHH-HHHHh---cC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN----------RDKWLE-LEALL---MN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs 301 (991)
+... ..+ .....+...+.......+.+|+|||++... ...+.+ +...+ .. ...+-
T Consensus 252 f~~~----~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEM----FVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH----hhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1111 000 112233344445555778999999995321 122222 22222 11 23456
Q ss_pred EEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC
Q 001955 302 KIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG 365 (991)
Q Consensus 302 ~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G 365 (991)
.||.||...+.... ......+.++..+.++-.++++.++..... .+ ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SP--DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---ch--hHHHHHHHhcCCC
Confidence 67777776544322 122346778888999989999887754211 11 1223667788777
No 173
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.004 Score=69.69 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=88.1
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCcee
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRY 272 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 272 (991)
++.|+|+-++||||+++.+... .... .+++...+...-..-+.+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999776653 1111 555554332211111111 11111111112778
Q ss_pred EEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH-----H-hCCCCceecCCCChHHHHHHHHHHHccCCCC
Q 001955 273 LLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVAR-----I-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSE 346 (991)
Q Consensus 273 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 346 (991)
.|+||.|... ..|......+.+.++. +|++|+-+..... . .+....+++.||+..|...+....+.
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~----- 168 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE----- 168 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc-----
Confidence 9999999776 6898888888887666 8999888755432 2 23344788999999997665431000
Q ss_pred CCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
.... ...-+-.-..||.|-++..-.
T Consensus 169 --~~~~-~~~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 169 --PSKL-ELLFEKYLETGGFPESVKADL 193 (398)
T ss_pred --hhHH-HHHHHHHHHhCCCcHHHhCcc
Confidence 0011 112222335789998775433
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.24 E-value=0.0031 Score=77.78 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=37.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+.++||+.+++++++.|.... ..-+.++|.+|+||||+|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999997642 234669999999999999998873
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=0.00014 Score=86.29 Aligned_cols=131 Identities=24% Similarity=0.255 Sum_probs=90.6
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcc--ccCccccCCCCccEEEccCCCCccccchhhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~ 622 (991)
.+|+.|.+.+... ....++..+-.-+|.|+.|.+++-.+. ++-....++++|+.||+|++. ++.+ ..+++|+
T Consensus 122 ~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccc
Confidence 3555665554321 122335566677999999999987664 233456789999999999998 7777 6799999
Q ss_pred CCCEEeCCCCCCCccc--cccccccccCcEEeeccccccCcCCc-------CCCCCCCCCcCCccccCCc
Q 001955 623 NLQTLDLSCCDDLVEL--PRDIGKMVSLRHLAIESCLSLTDMPN-------GLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~lp~-------~l~~L~~L~~L~l~~~~~~ 683 (991)
+||+|.+++ -.+..- -..+.+|++|++||+|....... +. .-..|++|+.|+.+++...
T Consensus 196 nLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999987 223322 24578899999999998643322 21 1134789999998765443
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.21 E-value=0.007 Score=58.58 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=72.1
Q ss_pred ecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc------------------cccceEEEEe
Q 001955 168 GRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT------------------HFNLRMWVCV 229 (991)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~~ 229 (991)
|-+...+.+...+.... -...+.++|+.|+||+|+|..+++..--.. ...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44556667777766431 345688999999999999988776311111 1112222221
Q ss_pred cCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh-----CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEE
Q 001955 230 SDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI-----DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIV 304 (991)
Q Consensus 230 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 304 (991)
... ...-..+++. .+.+.+ .+++=++|+||++....+.+..+...+......+++|
T Consensus 76 ~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 111 0012334443 222222 2356689999999888899999999999888899999
Q ss_pred EecCcHH
Q 001955 305 VTTRSER 311 (991)
Q Consensus 305 vTTR~~~ 311 (991)
++|.+..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 9998754
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0092 Score=65.25 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=91.0
Q ss_pred eee-cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 166 IIG-RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 166 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
++| -+.-++.+...+... .-.....++|+.|+||||+|+.+.+..--....... ....-..-+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 566 566667777776542 234677899999999999998886531100000000 0000000111100
Q ss_pred HccC------CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH
Q 001955 245 SATN------RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA 313 (991)
Q Consensus 245 ~l~~------~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~ 313 (991)
.-.. ........+++.+.+... ..+.+=++|+|++..-+......+...+.....++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000112233333333221 234556799999987777777888888888777888888877643 22
Q ss_pred HH-hCCCCceecCCCChHHHHHHHHH
Q 001955 314 RI-TSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 314 ~~-~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
.. ......+++.+++.++..+.+..
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 21 23334788999999998888765
No 178
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0083 Score=62.96 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=105.2
Q ss_pred eeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
+=|-++.+++|.+.+.-+-.+ --+.++=|.+||+||.|||-||++|++. ....| +.+.. .++
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----SEl 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----SEL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc----HHH
Confidence 557888899888877643221 0235677899999999999999999994 33333 33221 223
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHhC-CceeEEEecccccc-----------ChHHHHHHHHH---hcCC--CCCc
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEID-GKRYLLVLDDVWNE-----------NRDKWLELEAL---LMNG--VSGS 301 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~~~--~~gs 301 (991)
.++.+ +. -..+.+.+.+.-+ ..+.+|++|.++.. +.+.-..+... +..+ ...-
T Consensus 222 VqKYi----GE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 222 VQKYI----GE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred HHHHh----cc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 33322 11 1234444444444 35899999998531 11111222222 2222 2456
Q ss_pred EEEEecCcHHHHH-----HhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch----HHHHH
Q 001955 302 KIVVTTRSERVAR-----ITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP----LAIRT 372 (991)
Q Consensus 302 ~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP----Lal~~ 372 (991)
|||..|...++.. .-.-+..++++.-+.+.-.+.|.-|+....-. +.-++ +.+++.|.|.- -|+.+
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~----e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDL----ELLARLTEGFSGADLKAICT 366 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCH----HHHHHhcCCCchHHHHHHHH
Confidence 9999998765543 22344577777555566667787776554332 22344 44555555543 34445
Q ss_pred HHHHh
Q 001955 373 IGRLL 377 (991)
Q Consensus 373 ~~~~L 377 (991)
=|+++
T Consensus 367 EAGm~ 371 (406)
T COG1222 367 EAGMF 371 (406)
T ss_pred HHhHH
Confidence 56654
No 179
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.0012 Score=69.23 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=55.0
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCcee
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRY 272 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 272 (991)
-+.++|++|+|||.||..+.+. .......++|+++ .+++..+..... ....+.....+ .+.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcCC
Confidence 4899999999999999999873 2222234555543 345554433211 11222222222 2345
Q ss_pred EEEeccccccChHHHH--HHHHHhcCCCCCcEEEEecCcH
Q 001955 273 LLVLDDVWNENRDKWL--ELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 273 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTTR~~ 310 (991)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654333332 2333333221123588888753
No 180
>PRK12377 putative replication protein; Provisional
Probab=97.15 E-value=0.00085 Score=69.29 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=56.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
...+.++|.+|+|||+||.++++. .......++++++. +++..+-..... ....... +.. + .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l~~-l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---LQE-L-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---HHH-h-cC
Confidence 357899999999999999999984 33333345666553 344444333221 1111222 222 2 35
Q ss_pred eeEEEeccccccChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 271 RYLLVLDDVWNENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
-=||||||+.......|.. +...+... .+.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6799999995543344533 33333322 122346777763
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.004 Score=66.95 Aligned_cols=177 Identities=9% Similarity=0.011 Sum_probs=101.3
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc-----
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT----- 247 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~----- 247 (991)
-+.+...+..+ .-...+.++|+.|+||+++|+.++...--..... ...+..-..-+.+...-.
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEE
Confidence 34455555542 1345778999999999999988876311000000 000000011111111000
Q ss_pred --CCCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHH-hCCC
Q 001955 248 --NRESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARI-TSKL 319 (991)
Q Consensus 248 --~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~ 319 (991)
+.....-.++++.+..... ..+++=++|+|+++.-.......+...+....+++.+|++|.+.+ +... .+.-
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0001112344444322211 235666888999988887888889999988778888888887653 3222 2223
Q ss_pred CceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 320 PFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
..+.+.+++.++..+.+...... . . ..+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~-----~-~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA-----E-I---SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc-----C-h---HHHHHHHHHcCCCHHHH
Confidence 47889999999999888775411 1 1 12456788899999643
No 182
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.13 E-value=0.016 Score=66.18 Aligned_cols=207 Identities=15% Similarity=0.088 Sum_probs=121.7
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc---c---cccccceEEEEecCCCChH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED---V---KTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~---~~~F~~~~wv~~s~~~~~~ 236 (991)
+..+-+|+.+..+|..++...-.. ...-..+.|.|.+|+|||+.+..|.+... . -..| ..+.|+.-.-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 345779999999999888643321 12345899999999999999999987422 1 1233 23455556666799
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhC-----CceeEEEeccccccChHHHHHHHHHhcC-CCCCcEEEEecCc-
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEID-----GKRYLLVLDDVWNENRDKWLELEALLMN-GVSGSKIVVTTRS- 309 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTR~- 309 (991)
++...|...+.+... ....-.+.+..+.. .+..++++|+++.--...-+.+...|.+ ..++||++|.+-.
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999999976542 22333344444433 3468888898843211112233444544 3478887765531
Q ss_pred -HH---------HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHH
Q 001955 310 -ER---------VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRL 376 (991)
Q Consensus 310 -~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~ 376 (991)
.+ ++..++. ..+.+.|.+.++-.+....+..+... -.....+-+|++|+.--|-.-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11 1111121 24557777777777776665543311 122334455566666555555565555443
No 183
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.13 E-value=0.0024 Score=77.39 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
+.+.+|.++-+++|.++|............++.++|++|+||||+|+.++.. ....| +-+.++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4568999999999998887321110123457999999999999999999963 22223 223334433333222111
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHH----HHHHHHHhcCC---------------CCCcEE
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDK----WLELEALLMNG---------------VSGSKI 303 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 303 (991)
....+ . ....+.+.+...- ...-+++||.++...... ...+...+... -...-+
T Consensus 396 ~~~~g-~-----~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG-S-----MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC-C-----CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00111 0 1122333343321 233478899997653221 23444444321 133344
Q ss_pred EEecCcHHHHHH-hCCCCceecCCCChHHHHHHHHHHH
Q 001955 304 VVTTRSERVARI-TSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 304 ivTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
|.|+....+... .+...++++.+++.++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 555544322211 1223467888888888877776655
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0021 Score=75.55 Aligned_cols=123 Identities=17% Similarity=0.315 Sum_probs=77.4
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc---cceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF---NLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 237 (991)
..++|.+..++.+.+.+.... .+.+...++....|+.|||||-||++++.. -| +..+-++.|+-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~Ek-- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEK-- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHH--
Confidence 458999999999998886432 222456788889999999999999888862 23 23333433332111
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCcee-EEEeccccccChHHHHHHHHHhcCC
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRY-LLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
.-.+.+-+..+.--.-++ -..|-+..+.++| +|.||++....++...-+...|.++
T Consensus 564 ---HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 ---HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 112233333322211111 2233444557877 8899999998888888888887765
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.0093 Score=73.62 Aligned_cols=138 Identities=14% Similarity=0.224 Sum_probs=77.0
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+.... ........++.++|++|+|||++|+.+++.. -..-...+.+.++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh---
Confidence 458999999999888886421 1112234688999999999999999998631 11112234444433211 11
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCCc-eeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecC
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDGK-RYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTR 308 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR 308 (991)
....+.+..+.....+. ...+.+.++.+ .-+|+|||+...+...+..+...+..+. ..+.||+||.
T Consensus 642 -~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 -SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred -hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11222222111111111 01122222222 3599999998888888888877775541 1233777876
Q ss_pred c
Q 001955 309 S 309 (991)
Q Consensus 309 ~ 309 (991)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 186
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.07 E-value=0.0078 Score=73.45 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=71.6
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+.... ........++.++|++|+|||++|+.++... +...+.++.++-.+...+ .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~-~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTV-S 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccH-H
Confidence 457899988898888876321 1112235678999999999999999998732 223455555442221111 1
Q ss_pred HHHHHccCCC--CcccCHHHHHHHHHhHhCCc-eeEEEeccccccChHHHHHHHHHhcCC
Q 001955 241 KMIRSATNRE--SEKLDLDQLQERLRGEIDGK-RYLLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 241 ~i~~~l~~~~--~~~~~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
.+ ++... ........+.+ .++.+ .-+++||+++....+.+..+...+..+
T Consensus 528 ~l---ig~~~gyvg~~~~~~l~~----~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 528 RL---IGAPPGYVGFEQGGLLTE----AVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred HH---hcCCCCCcccchhhHHHH----HHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11 11111 01111122333 33333 459999999988888888888877654
No 187
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.07 E-value=0.0023 Score=68.72 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=69.8
Q ss_pred ecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 168 GRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
+|........+++..... ....+-+.++|..|+|||.||.++++... +.. ..+.+++++ .++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHh
Confidence 444455555566653221 11345799999999999999999998532 222 234566543 45555544432
Q ss_pred CCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHH--HHHHh-cCC-CCCcEEEEecCc
Q 001955 248 NRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLE--LEALL-MNG-VSGSKIVVTTRS 309 (991)
Q Consensus 248 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTTR~ 309 (991)
. ....+ .+.. + .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~-----~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 11222 2222 2 345689999997766667753 44433 222 234568888873
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.018 Score=60.73 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=58.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH------------HHHccCCCC---cccCHH
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM------------IRSATNRES---EKLDLD 257 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i------------~~~l~~~~~---~~~~~~ 257 (991)
-|.+.|++|+|||++|+.+++ .... ..+++++....+..+++... ......... ......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 466899999999999999986 2221 23455555555544443221 110000000 000000
Q ss_pred HHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC----------------CCCcEEEEecCc
Q 001955 258 QLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG----------------VSGSKIVVTTRS 309 (991)
Q Consensus 258 ~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTTR~ 309 (991)
. +.... .+...+++|++...+.+.+..+...+..+ .++.+||+|+..
T Consensus 98 ~----l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 98 R----LTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred h----HHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 1 11111 23568999999887777777777766432 135678888774
No 189
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.00028 Score=68.63 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=27.0
Q ss_pred EEEEEecCCChHHHHHHHHhCCcccc-ccccceEE
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVK-THFNLRMW 226 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 226 (991)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999854433 45666665
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.029 Score=60.28 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=101.2
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccc-cc-c-----eEEEEecCCCChHHHHHHHHHH
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH-FN-L-----RMWVCVSDIFDVTTIVEKMIRS 245 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~-----~~wv~~s~~~~~~~~~~~i~~~ 245 (991)
.+.+...+..+ .-...+.++|+.|+||+++|+.++...-=... .. | .-++.....+|...+
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------- 79 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------- 79 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-------
Confidence 34555555432 23467889999999999999888752100000 00 0 000000111111000
Q ss_pred ccCC-CCcccCHHHHHHHHHhHh-----CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHH-HhC
Q 001955 246 ATNR-ESEKLDLDQLQERLRGEI-----DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VAR-ITS 317 (991)
Q Consensus 246 l~~~-~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~~~ 317 (991)
... ....-.++++.+ +.+.+ .+.+=++|+|+++.........+...+....+++.+|++|.+.+ +.. ..+
T Consensus 80 -~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 80 -KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred -ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000 011123444432 22222 24456889999988888888899999988777888887777653 332 223
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
.-..+.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 33478899999999988886531 1 1 1356788999999876554
No 191
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.02 E-value=0.0073 Score=70.30 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=93.1
Q ss_pred CceeecchhHHHHHHHHh---CCCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLL---DSSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++++.+.+. .... ......+-+.++|++|+|||++|+.+++.. ... ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 357888776665554433 2110 001233458899999999999999999742 111 222221 11
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC----------hHHHHHHHH-H---hcC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN----------RDKWLELEA-L---LMN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~~l~~-~---l~~--~~~gs 301 (991)
+... ..+ .....+...+.......+.+|+|||++.-. ...+..... . +.. ...+-
T Consensus 124 ~~~~----~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVEM----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHHH----Hhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 1111 110 112233334444444567899999995421 112222211 1 211 22345
Q ss_pred EEEEecCcHHHHH-----HhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 302 KIVVTTRSERVAR-----ITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 302 ~iivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
.||.||....... .......+.++..+.++-.++|..+....... ...+ ...+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVD----LKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchh----HHHHHHhCCCCC
Confidence 6677776543221 11234467888888888888888776432211 1112 246777777643
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.01 E-value=0.0025 Score=78.21 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=78.5
Q ss_pred CceeecchhHHHHHHHHhCC---CCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS---SESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+.+.+... -........++.++|++|+|||.+|+.++.. .-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 46899999999999888532 1111335568999999999999999888763 11111222223332211111
Q ss_pred HHHHHccCCCCcc---cCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEe
Q 001955 241 KMIRSATNRESEK---LDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVT 306 (991)
Q Consensus 241 ~i~~~l~~~~~~~---~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 306 (991)
-...+.+..+.. .....+...+++ ...-+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111121111111 111223333332 345699999998888888888877776552 34566777
Q ss_pred cCc
Q 001955 307 TRS 309 (991)
Q Consensus 307 TR~ 309 (991)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 664
No 193
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.0023 Score=67.26 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=54.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCcccccc-ccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTH-FNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
..-+.++|.+|+|||+||.++++. .... -..++|++.. +++..+.... +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 457899999999999999999984 2222 2345666642 2333332211 111122222 2 2
Q ss_pred ceeEEEeccccc-----cChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 270 KRYLLVLDDVWN-----ENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 270 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 456999999932 22234543 33333221 134457888774
No 194
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.001 Score=67.54 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=28.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV 229 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 229 (991)
-.++|+|..|+||||++..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999987 36678876666643
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.00 E-value=0.0035 Score=77.62 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=79.5
Q ss_pred CceeecchhHHHHHHHHhCCCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+..... .......++.++|++|+|||++|+.+... ....-...+.++++.-.+... ..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-VA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-HH
Confidence 4589999999999998875321 11223567889999999999999999973 111112334444443222111 11
Q ss_pred HHHHHccCCCCcc---cCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEe
Q 001955 241 KMIRSATNRESEK---LDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVT 306 (991)
Q Consensus 241 ~i~~~l~~~~~~~---~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 306 (991)
.+ ++ ..+.. .....+...++. ....+|+||++.......+..+...+..+. ..+-||+|
T Consensus 642 ~l---~g-~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 642 RL---IG-APPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred Hh---cC-CCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11 11 11111 111223333332 223489999999888888888888875541 23347777
Q ss_pred cCc
Q 001955 307 TRS 309 (991)
Q Consensus 307 TR~ 309 (991)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 196
>PRK06526 transposase; Provisional
Probab=96.99 E-value=0.0013 Score=68.61 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=52.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
.-+.|+|++|+|||+||..+..... ...+ .+.|+ +..+++..+..... .. .+...+... .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH-----AG---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHHh--ccC
Confidence 4589999999999999999886422 2222 22333 23344444432211 01 112223332 245
Q ss_pred eEEEeccccccChHHHH--HHHHHhcCC-CCCcEEEEecCcH
Q 001955 272 YLLVLDDVWNENRDKWL--ELEALLMNG-VSGSKIVVTTRSE 310 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~~ 310 (991)
-+||+||+.......|. .+...+... ..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999654322222 233333221 2343 88888753
No 197
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.0035 Score=64.64 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=56.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
...+.++|.+|+|||+||.++++... ..-..++++++ .+++..+-..... .....+.+. +.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~~l----~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQLL----NDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHHHH----HHhc-c
Confidence 35789999999999999999998532 22234455543 4444444333211 111222222 2233 3
Q ss_pred eeEEEeccccccChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 271 RYLLVLDDVWNENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
.=+|||||+......+|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588899997665556654 32333221 123357777764
No 198
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00023 Score=71.84 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=100.0
Q ss_pred cccccccCceeeccccccccCCCC-CCCCccceeeccccccceeccCCCCC-CCCCCCCccEEeeccccc---------c
Q 001955 768 LSSVTNLTMIDISICIKCQYIPEL-DQLPSLKRLRLFKLSALEYISSSSPP-STTIFPSLEELRIFACPE---------L 836 (991)
Q Consensus 768 l~~l~~L~~L~L~~~~~~~~lp~l-~~l~~L~~L~l~~~~~l~~i~~~~~~-~~~~~~~L~~L~l~~~~~---------L 836 (991)
+.++|.|+.|+|+.|+....+..+ ..+.+|+.|-|.+ +++++.... ....+|.++.|+++.+.- .
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg----T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG----TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcC----CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 347888888998888765554444 2556888888877 555443332 334678888887776510 1
Q ss_pred ccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc
Q 001955 837 KGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP 916 (991)
Q Consensus 837 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 916 (991)
+.|...-.......|+... ..+...-...||++..+.+..||-=+.-..+.+..+|.+--|.+..+ ++.++.
T Consensus 169 e~~s~~v~tlh~~~c~~~~-------w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswa 240 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQL-------WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWA 240 (418)
T ss_pred cccchhhhhhhcCCcHHHH-------HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHH
Confidence 1111111111112222111 00000012357888888888885322222334556777777788777 555543
Q ss_pred --ccCCCCCCCCeEeeecCCCCCcCCCCCC-------cCeEEEecCcch
Q 001955 917 --QRLNKATTLKTVGIYDCPNMAILPEGLQ-------LQSLEIIQCPQL 956 (991)
Q Consensus 917 --~~l~~l~~L~~L~l~~c~~l~~lp~~~~-------L~~L~i~~c~~L 956 (991)
+.+..+++|..|.++++|...++-.+-. |.++.+.+-..+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence 4577888899999999987776654322 555555444333
No 199
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.97 E-value=0.0028 Score=70.75 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=82.3
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH-H
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM-I 243 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i-~ 243 (991)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........|... .+.++ ++.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcHHH
Confidence 48999999999999887643 48899999999999999999732222233211 11111 122222111 1
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC---------CCcEEEEecCcHHHHH
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV---------SGSKIVVTTRSERVAR 314 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTTR~~~v~~ 314 (991)
..... . ..........+. .--++++|+++......-..+...+.... -..+++|++.++ +..
T Consensus 89 ~~~~~----~---g~f~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE 159 (498)
T PRK13531 89 QALKD----E---GRYQRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPE 159 (498)
T ss_pred hhhhh----c---CchhhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-Ccc
Confidence 11000 0 000000001111 11289999999887776677766663321 123565555442 221
Q ss_pred --------HhCCCCceecCCCChHH-HHHHHHHH
Q 001955 315 --------ITSKLPFHALRGLPEDM-SWSLFTRM 339 (991)
Q Consensus 315 --------~~~~~~~~~l~~L~~~~-~~~Lf~~~ 339 (991)
...-.-.+.++++++++ -.+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11112256788897544 47777653
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.95 E-value=0.0011 Score=65.03 Aligned_cols=100 Identities=20% Similarity=0.343 Sum_probs=51.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
..-+.++|.+|+|||.||..+.+.. .... ..+.|+++ .+++..+-.. . .....+...+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~------~~L~~~l~~~----~-~~~~~~~~~~~l~-----~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA------SDLLDELKQS----R-SDGSYEELLKRLK-----R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHHHCC----H-CCTTHCHHHHHHH-----T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec------Cceecccccc----c-cccchhhhcCccc-----c
Confidence 3469999999999999999998742 2222 23556653 3344443221 1 1112222322222 3
Q ss_pred eeEEEeccccccChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 271 RYLLVLDDVWNENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
-=||||||+-.+....|.. +...+... ..+ .+||||.-
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 4578899997654445533 22222221 123 57888874
No 201
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.014 Score=57.81 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=72.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
..++|.|...+.+++-...=.. .....-|.+||.-|+|||.|++++.+. +....-. -|.|.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k------------ 121 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDK------------ 121 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcH------------
Confidence 4589998888887753321111 123456889999999999999999983 3322221 222211
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccc-cChHHHHHHHHHhcCC---CCCcEEEEecCcH
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWN-ENRDKWLELEALLMNG---VSGSKIVVTTRSE 310 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTTR~~ 310 (991)
.+..+...+...|+. +.+||+|..||..= +....+..+...+..+ .|...++..|.++
T Consensus 122 -------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 -------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 111223334444443 26899999999843 3446777788877654 3555666666553
No 202
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=0.00021 Score=63.71 Aligned_cols=72 Identities=32% Similarity=0.466 Sum_probs=47.5
Q ss_pred hhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc
Q 001955 568 NKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD 641 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~ 641 (991)
+++-.+++.++.|+|++|.|..+|..+..++.||.|+++.|. +...|.-|..|.+|-.||..+| -..++|..
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 444455666777777777777777777777777777777776 5666666666777777776663 34455544
No 203
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.90 E-value=0.0036 Score=71.36 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=62.5
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 188 IESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 188 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
.+.-+|+.++|++|.||||||..++++.. | .++=+.+|+..+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 45679999999999999999999997422 2 35667788888877777666655542221111
Q ss_pred CCceeEEEeccccccChHHHHHHHHHhc
Q 001955 268 DGKRYLLVLDDVWNENRDKWLELEALLM 295 (991)
Q Consensus 268 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 295 (991)
.+++.-+|+|.++.......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 1578889999998765444555555544
No 204
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0041 Score=61.43 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=28.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC 228 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (991)
...+|.+.|++|+||||+|+.+++ .....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999997 3444555555553
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0081 Score=66.24 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=77.9
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc-------------------cccceE
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT-------------------HFNLRM 225 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 225 (991)
.++|-+....++..+...... ....+.++|++|+||||+|..+++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777888888888875432 233699999999999999988887421111 112333
Q ss_pred EEEecCCCC---hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcE
Q 001955 226 WVCVSDIFD---VTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSK 302 (991)
Q Consensus 226 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 302 (991)
.+..+.... ..+.++++.+...... ..++.-++++|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 343333333 2223333332222110 025678999999987766666667777777777888
Q ss_pred EEEecCcH
Q 001955 303 IVVTTRSE 310 (991)
Q Consensus 303 iivTTR~~ 310 (991)
+|++|...
T Consensus 142 ~il~~n~~ 149 (325)
T COG0470 142 FILITNDP 149 (325)
T ss_pred EEEEcCCh
Confidence 88888743
No 206
>PRK04296 thymidine kinase; Provisional
Probab=96.85 E-value=0.0034 Score=62.63 Aligned_cols=112 Identities=11% Similarity=-0.010 Sum_probs=61.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCc--ccCHHHHHHHHHhHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESE--KLDLDQLQERLRGEIDG 269 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~L~~ 269 (991)
.++.|+|.+|.||||+|..++.. ...+-..++.+. ..++.+.....++++++..... ....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999887763 322222233331 1112222233344454422111 2234555555555 333
Q ss_pred ceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 270 KRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
+.-+||+|.+.--+.+...++...+. ..|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 45589999995432222333333332 3678899998874
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.84 E-value=0.0017 Score=64.44 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=63.1
Q ss_pred ecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEec----CC--CChHHH---
Q 001955 168 GRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVS----DI--FDVTTI--- 238 (991)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s----~~--~~~~~~--- 238 (991)
.+..+-...++.|. ...++.+.|++|.|||.||-+.+-+.-..+.|+.++++.-. +. |-+-.+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34555666677776 33489999999999999998877654455778877776421 11 001111
Q ss_pred ----HHHHHHHccCCCCcccCHHHHHHHH------HhHhCCce---eEEEeccccccChHHHHHHHHHhcCCCCCcEEEE
Q 001955 239 ----VEKMIRSATNRESEKLDLDQLQERL------RGEIDGKR---YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV 305 (991)
Q Consensus 239 ----~~~i~~~l~~~~~~~~~~~~l~~~l------~~~L~~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 305 (991)
+.-+...+..- ......+.+.+.= ..+++|+. .+||+|++.+.....+. ..+...+.|||+|+
T Consensus 76 ~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k---~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELK---MILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHH---HHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHH---HHHcccCCCcEEEE
Confidence 11111111110 0111222222110 13456653 59999999876555444 44666678999999
Q ss_pred ecCcH
Q 001955 306 TTRSE 310 (991)
Q Consensus 306 TTR~~ 310 (991)
+=-..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86543
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0009 Score=71.88 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=41.6
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+++|.++.++++++++...........+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997644322335689999999999999999999874
No 209
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.025 Score=56.50 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=95.9
Q ss_pred CCceeecchhHHH---HHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHH
Q 001955 163 KEDIIGRDGDKNE---IIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 163 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 239 (991)
-+++||.+..+.+ |++.|.++..=..-..+-|..+|++|.|||.+|+++++...+ .| +.+ +..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~v-------kat 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLV-------KAT 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEe-------chH
Confidence 3568998876654 556666543211335688999999999999999999995332 11 111 111
Q ss_pred HHHHHHccCCCCcccCHHHHHHHHHh-HhCCceeEEEeccccccC---------hHHHHHHHHHhc---C--CCCCcEEE
Q 001955 240 EKMIRSATNRESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNEN---------RDKWLELEALLM---N--GVSGSKIV 304 (991)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~---~--~~~gs~ii 304 (991)
.-|-+.++ +....++.+.+ .-+.-++++.+|.++... .+.-+.+.+.|. . .+.|-..|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11222222 11122222222 223468999999874311 011111222221 1 24576677
Q ss_pred EecCcHHHHHHh---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc
Q 001955 305 VTTRSERVARIT---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV 366 (991)
Q Consensus 305 vTTR~~~v~~~~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 366 (991)
-.|.+.++.... ....-++...-+++|-.+++...+-.-.-+.+ .. .+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~~----~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-AD----LRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-cC----HHHHHHHhCCC
Confidence 777776654332 12235667777888888888887744322211 11 24555666554
No 210
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.80 E-value=0.00031 Score=62.73 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=56.0
Q ss_pred hccCCcccEEEccCCCccccCccccC-CCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCc
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGK-LKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLR 649 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~-l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 649 (991)
+.....|...+|++|.+..+|+.|.. .+.++.|+|++|. +.++|..+..++.|+.|+++.| .+...|.-+..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 34555666677777777777665543 3467777777776 7777777777777777777763 4566666666677777
Q ss_pred EEeeccc
Q 001955 650 HLAIESC 656 (991)
Q Consensus 650 ~L~l~~~ 656 (991)
.|+..+|
T Consensus 127 ~Lds~~n 133 (177)
T KOG4579|consen 127 MLDSPEN 133 (177)
T ss_pred HhcCCCC
Confidence 7766555
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.78 E-value=0.0091 Score=73.13 Aligned_cols=180 Identities=17% Similarity=0.104 Sum_probs=93.8
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
+++.|.+..++++.+++...-.. .-...+-|.++|++|+||||+|+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 34789999999988877422100 0123456889999999999999999973 22222 222211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hHHHHHHHHHhcCC-CCCcEEE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEALLMNG-VSGSKIV 304 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ii 304 (991)
.+. .... ....+.+...+.......+.+|+||+++... ......+...+... ..+..++
T Consensus 247 ~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 1110 0112223333333344567899999985321 11122333333322 2233444
Q ss_pred E-ecCcHHHH-HHh----CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 305 V-TTRSERVA-RIT----SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 305 v-TTR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
| ||....-. ... .....+.+...+.++-.+++..+.-.... ..+. ....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCCH
Confidence 4 55443211 111 12335667777888888888765432211 1111 13667888888653
No 212
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.78 E-value=0.0062 Score=75.27 Aligned_cols=136 Identities=17% Similarity=0.224 Sum_probs=77.9
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+.... .........+.++|+.|+|||+||+.+++. .-..-...+.++.+.-.+...+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-H
Confidence 568999999999988876321 111223456789999999999999998862 1111122334444432221111 1
Q ss_pred HHHHHccCCC--CcccCHHHHHHHHHhHhCCce-eEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEe
Q 001955 241 KMIRSATNRE--SEKLDLDQLQERLRGEIDGKR-YLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVT 306 (991)
Q Consensus 241 ~i~~~l~~~~--~~~~~~~~l~~~l~~~L~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 306 (991)
.+ ++... ........+ .+.++.++ -+++||+++..+.+.+..+...+..+. ..+-+|+|
T Consensus 586 ~l---~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 KL---IGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred Hh---cCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11 11110 011111223 33344454 589999999888888888888776541 34456666
Q ss_pred cCc
Q 001955 307 TRS 309 (991)
Q Consensus 307 TR~ 309 (991)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 213
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.77 E-value=0.00056 Score=71.03 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=86.2
Q ss_pred hhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc--------------CccccCCCCccEEE
Q 001955 539 TALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV--------------PSLIGKLKHLRYFN 604 (991)
Q Consensus 539 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l--------------p~~~~~l~~L~~L~ 604 (991)
..+..+++|+++.+++|......+ ..+..+++++..|+.|.|.+|.+... ..-+++-++||++.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~--~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGI--RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHhcCCceeEeeccccccCccch--HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 445667788888888877644332 12456777888888888888876521 12345567788888
Q ss_pred ccCCCCccccch-----hhhcccCCCEEeCCCCCCCc----cccccccccccCcEEeeccccccCc----CCcCCCCCCC
Q 001955 605 LSHNADIKSLPD-----SVSRLLNLQTLDLSCCDDLV----ELPRDIGKMVSLRHLAIESCLSLTD----MPNGLGQLTN 671 (991)
Q Consensus 605 L~~~~~~~~lP~-----~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~~~~~----lp~~l~~L~~ 671 (991)
...|+ +..-|. .+...+.|+.+.+..|..-. .+-..+..+++|+.||+.+|..... +...+..+++
T Consensus 164 ~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 164 CGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 88877 443332 45566778888877754321 1234456778888888887743322 2233455666
Q ss_pred CCcCCcccc
Q 001955 672 LRTLPLFMV 680 (991)
Q Consensus 672 L~~L~l~~~ 680 (991)
|+.|++..|
T Consensus 243 L~El~l~dc 251 (382)
T KOG1909|consen 243 LRELNLGDC 251 (382)
T ss_pred heeeccccc
Confidence 777766554
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.032 Score=57.66 Aligned_cols=81 Identities=11% Similarity=0.254 Sum_probs=51.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc--ccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK--THFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
.-|+|.++|+||.|||+|++++++...++ +.+....-+.+ +...++.++..+-+ ..+..+.+.|.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsESg------KlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSESG------KLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhhhh------hHHHHHHHHHHHHH
Confidence 34889999999999999999999875444 33433333333 22345555544433 23456666677766
Q ss_pred CCce--eEEEecccc
Q 001955 268 DGKR--YLLVLDDVW 280 (991)
Q Consensus 268 ~~kr--~LlVlDdv~ 280 (991)
.++. +.+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 6554 456688884
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.0035 Score=65.77 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
..+.|+|++|+|||+||..+..... ... ..+.+++ ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4678999999999999999976321 111 1233443 22333333222110 11 222232222 345
Q ss_pred eEEEeccccccChHHHH--HHHHHhcCC-CCCcEEEEecCc
Q 001955 272 YLLVLDDVWNENRDKWL--ELEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 309 (991)
-++|+||+.......+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999754323332 233333221 2344 7888874
No 216
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.73 E-value=0.0029 Score=56.40 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~ 214 (991)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998863
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.077 Score=57.82 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=101.5
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc---cc-----eEEEEecCCCChHHHHHHHHH
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF---NL-----RMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~~i~~ 244 (991)
-+++...+..+ .-...+.++|+.|+||+++|..++...-=...- .| .-++.....+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 45556665542 235678899999999999998876521000000 00 000111111111110
Q ss_pred HccCCCC-cccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHH-hC
Q 001955 245 SATNRES-EKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARI-TS 317 (991)
Q Consensus 245 ~l~~~~~-~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~ 317 (991)
.+... ..-.++++.+..... ..+++=++|+|+++.-.......+...+.....++.+|++|.+.+ +... .+
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00000 112344444332221 235667899999988877888889999988777888887777644 3322 22
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
.-..+.+.+++.+++.+.+.... +. + .+.+..++..++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~---~~---~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV---TM---S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc---CC---C---HHHHHHHHHHcCCCHHHHH
Confidence 23367899999999988876532 11 1 1235678999999996443
No 218
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0034 Score=61.43 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=39.8
Q ss_pred EEEEEecCCChHHHHHHHHhCCccc-cccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDV-KTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
.|.|+|++|+||||||+.+...... .-+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998863221 113344444211 011233455556666666666
Q ss_pred eEEEeccccc
Q 001955 272 YLLVLDDVWN 281 (991)
Q Consensus 272 ~LlVlDdv~~ 281 (991)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 219
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.70 E-value=0.0051 Score=59.69 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=68.7
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecCCCChHHHHHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
+||....++++.+.+...... . .-|.|+|..|+||+.+|+.+++... ....| +-|+++. .+.+.+-.++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~---~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS---D-LPVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS---T-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCC---C-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhh-hhcchhhhhhhc
Confidence 468888888888877654331 2 3466999999999999999998421 11222 3333332 233333333332
Q ss_pred HccCCCCcc-cCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC------C-----CCcEEEEecCc
Q 001955 245 SATNRESEK-LDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG------V-----SGSKIVVTTRS 309 (991)
Q Consensus 245 ~l~~~~~~~-~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTTR~ 309 (991)
...+..... ..... .+.. -..=-|+||++.+-....-..+...+..+ . ...|||.||..
T Consensus 73 ~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 211111111 00111 1221 24556889999887666666666666532 1 25688888875
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.053 Score=58.89 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=65.9
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCC
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSE 346 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 346 (991)
+++=++|+|+++..+...+..+...+....+++.+|++|.+.+ +... .+.-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 4556888999998888899999999988778887777776643 3222 2233478899999999998887641 1
Q ss_pred CCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 347 PKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 347 ~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
. + ...++..++|.|+.+..+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 133577889999755443
No 221
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.097 Score=57.60 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=32.8
Q ss_pred chhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 170 DGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445667777776432 36789999999999999999998874
No 222
>PHA02244 ATPase-like protein
Probab=96.67 E-value=0.0092 Score=64.26 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=52.7
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCcee
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRY 272 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~ 272 (991)
-|.|+|++|+|||++|++++.. .... |+.++...+... +..... .........+... . .+.-
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~p-----fv~In~l~d~~~----L~G~i~--~~g~~~dgpLl~A----~-~~Gg 182 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDLD-----FYFMNAIMDEFE----LKGFID--ANGKFHETPFYEA----F-KKGG 182 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecChHHHh----hccccc--ccccccchHHHHH----h-hcCC
Confidence 3778999999999999999973 2212 333332111000 000000 0011111112222 1 2456
Q ss_pred EEEeccccccChHHHHHHHHHhcC-----------CCCCcEEEEecCc
Q 001955 273 LLVLDDVWNENRDKWLELEALLMN-----------GVSGSKIVVTTRS 309 (991)
Q Consensus 273 LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTTR~ 309 (991)
+++||++.....+....+...+.. ..++.++|+|+..
T Consensus 183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 183 LFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred EEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 999999987665555555555531 1356788888775
No 223
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.63 E-value=0.31 Score=53.59 Aligned_cols=203 Identities=13% Similarity=0.158 Sum_probs=120.0
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHH-HHHhCCccccccccceEEEEecCC---CChHHHHHHHHH
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVA-QLVYNDEDVKTHFNLRMWVCVSDI---FDVTTIVEKMIR 244 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~ 244 (991)
|.+.+++|..||....+ ..|.|.|+-|+||+.|+ .++..+.+ .+..+++.+. .+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999987543 58999999999999999 77776522 2556655432 222334444444
Q ss_pred Hcc-----------------------CCCCc-ccCH-HHHHHHH-------Hh-------------------HhC---Cc
Q 001955 245 SAT-----------------------NRESE-KLDL-DQLQERL-------RG-------------------EID---GK 270 (991)
Q Consensus 245 ~l~-----------------------~~~~~-~~~~-~~l~~~l-------~~-------------------~L~---~k 270 (991)
++| +.... ..+. .++.+.+ ++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 22211 1111 1222221 11 111 22
Q ss_pred eeEEEeccccccC---hHHHHHHHH---HhcCCCCCcEEEEecCcHHHHH----HhC--CCCceecCCCChHHHHHHHHH
Q 001955 271 RYLLVLDDVWNEN---RDKWLELEA---LLMNGVSGSKIVVTTRSERVAR----ITS--KLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 271 r~LlVlDdv~~~~---~~~~~~l~~---~l~~~~~gs~iivTTR~~~v~~----~~~--~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
|=+||+|+.-... ..-|+.+.. .+.. .+=.+||++|-+..... .+. ....+.|...+++.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 5689999985431 122333322 1222 24458999888754443 332 224677899999999999998
Q ss_pred HHccCCCC------------CCC----hhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChH
Q 001955 339 MAFEQGSE------------PKD----SKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTET 384 (991)
Q Consensus 339 ~a~~~~~~------------~~~----~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~ 384 (991)
+....... ... .....-....++..||=-.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 87543110 000 11223346788899999999999999998877654
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.63 E-value=0.0013 Score=62.15 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=50.3
Q ss_pred EEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeE
Q 001955 194 IPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYL 273 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~L 273 (991)
|.++|++|+|||+||+.++.. .. ....-+.++...+..+++...--. .... . .....+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~-~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQF-E-FKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTTT-C-EEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-cccc-c-cccccccccc-----cceeE
Confidence 679999999999999999973 21 123345677777777654322111 0000 0 0000011001 17899
Q ss_pred EEeccccccChHHHHHHHHHhcC
Q 001955 274 LVLDDVWNENRDKWLELEALLMN 296 (991)
Q Consensus 274 lVlDdv~~~~~~~~~~l~~~l~~ 296 (991)
+|||++.......+..+...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999987765666666666543
No 225
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.0047 Score=66.93 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=48.1
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHHh-CCCCceecCCCChHHHHHHHHHH
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARIT-SKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.. +.... ..-..+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556798887777777777777766555677777777654 33221 22246789999999998888653
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=96.60 E-value=0.052 Score=65.67 Aligned_cols=155 Identities=12% Similarity=0.046 Sum_probs=96.8
Q ss_pred cCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEec
Q 001955 199 IGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLD 277 (991)
Q Consensus 199 ~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlD 277 (991)
|.++||||+|..++++. ....+ ..++-+++++...... +++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999852 11222 2355666666544443 33333332211100 01245799999
Q ss_pred cccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHHH-hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHH
Q 001955 278 DVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VARI-TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQI 355 (991)
Q Consensus 278 dv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~ 355 (991)
+++.-+......+...+......+++|++|.+.. +... .+....+.+.+++.++-...+...+...+... -.+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 9998887888888888877556677777766543 3222 12234788999999998888777654332211 1346
Q ss_pred HHHHHhhcCCchHHHHHH
Q 001955 356 GKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 356 ~~~I~~~c~GlPLal~~~ 373 (991)
...|++.|+|.+-.+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 689999999988544433
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.071 Score=58.79 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=85.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
.....+.+.|++|+|||+||..++.. ..|+.+--++-.+.... .+......+...+.+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHhhc
Confidence 36677889999999999999999863 45654433321111100 111112233334444445
Q ss_pred CceeEEEeccccccChHHHHH------------HHHHhcCCC-CCcE--EEEecCcHHHHHHhCC----CCceecCCCCh
Q 001955 269 GKRYLLVLDDVWNENRDKWLE------------LEALLMNGV-SGSK--IVVTTRSERVARITSK----LPFHALRGLPE 329 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~------------l~~~l~~~~-~gs~--iivTTR~~~v~~~~~~----~~~~~l~~L~~ 329 (991)
..--.||+||+..- -+|-. +...+.... +|-| |+-||....+.+.|+- ...+.++.++.
T Consensus 597 S~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 66679999999542 22222 222232222 3334 5557777888887753 34788999987
Q ss_pred -HHHHHHHHHHH-ccCCCCCCChhHHHHHHHHHhhc
Q 001955 330 -DMSWSLFTRMA-FEQGSEPKDSKLVQIGKDVVGKC 363 (991)
Q Consensus 330 -~~~~~Lf~~~a-~~~~~~~~~~~~~~~~~~I~~~c 363 (991)
++..+.++..- |. +.+.+.++++...+|
T Consensus 675 ~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 77777776643 22 233455666666666
No 228
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.008 Score=64.99 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=63.0
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccc-eEEEEecC-CCChHHHHHHHHHHccCC
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNL-RMWVCVSD-IFDVTTIVEKMIRSATNR 249 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~ 249 (991)
-..++++.+..-. .-+.+.|+|.+|+|||||++.+++... .++-+. .+|+.+.+ ..++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3345777776432 234569999999999999999887321 122234 36666654 457788888888777643
Q ss_pred CCcccCHH-----HHHHHHHhHh--CCceeEEEeccc
Q 001955 250 ESEKLDLD-----QLQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 250 ~~~~~~~~-----~l~~~l~~~L--~~kr~LlVlDdv 279 (991)
..+..... .....+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 32221111 1111222222 489999999999
No 229
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.55 E-value=0.0024 Score=60.11 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=63.4
Q ss_pred eecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc-cccccceEEEEecCCCChHHHHHHHHHH
Q 001955 167 IGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV-KTHFNLRMWVCVSDIFDVTTIVEKMIRS 245 (991)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 245 (991)
||+...++++.+.+..-.. ...-|.|+|.+|+||+++|+.++..... ...|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 5666777777776654322 3345789999999999999998874222 1122110 0000
Q ss_pred ccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC-CCCcEEEEecCc
Q 001955 246 ATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 246 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~ 309 (991)
.+ .+.+.+ .+.--|+|+|+..-+......+...+... ....|+|.||+.
T Consensus 60 --------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 --------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 111111 14556789999887766777777777643 567899999885
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.0072 Score=61.67 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=36.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999888763 223346788998875 66655443
No 231
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.51 E-value=9.4e-05 Score=83.29 Aligned_cols=79 Identities=29% Similarity=0.398 Sum_probs=41.5
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
-++.|+.|||++|+++..- .+..|++|+.|||++|. +..+|.- ...+. |+.|.|++| .+..+ .+|.+|.+|++|
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhcc
Confidence 3445566666666655542 45556666666666665 4445441 11222 566666653 33333 345566666666
Q ss_pred eeccc
Q 001955 652 AIESC 656 (991)
Q Consensus 652 ~l~~~ 656 (991)
|++.|
T Consensus 260 DlsyN 264 (1096)
T KOG1859|consen 260 DLSYN 264 (1096)
T ss_pred chhHh
Confidence 66655
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.00095 Score=66.95 Aligned_cols=108 Identities=22% Similarity=0.249 Sum_probs=70.5
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCC--CCccccchhhhcccCCCEEeCCCCCCCcccccc---cccc
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHN--ADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD---IGKM 645 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~---i~~L 645 (991)
...+..|..|++.++.++.+ ..+..|++|++|.++.| ...+.++-...++++|++|++++|. +.. +.. +..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 34556677777777776655 33567888899999888 5556666666677889999988854 332 232 4566
Q ss_pred ccCcEEeeccccccCcCC----cCCCCCCCCCcCCccccCC
Q 001955 646 VSLRHLAIESCLSLTDMP----NGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 646 ~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~L~l~~~~~ 682 (991)
.+|..|++.+|.... +- ..+.-+++|+.|+.+.+..
T Consensus 116 ~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred cchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 777788888774433 21 1134567777777765543
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.49 E-value=0.0053 Score=66.42 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=54.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
.-+.++|.+|+|||+||.++++... ... ..++|+++.. ++..+....... ..+.... +. .+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g-~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~---~~-~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRG-KSVIYRTADE------LIEILREIRFNN---DKELEEV---YD-LLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCC-CeEEEEEHHH------HHHHHHHHHhcc---chhHHHH---HH-Hhc-cC
Confidence 5699999999999999999998422 222 2456665432 333332211111 0111111 22 222 23
Q ss_pred eEEEeccccccChHHHHH--HHHHhcCC-CCCcEEEEecCc
Q 001955 272 YLLVLDDVWNENRDKWLE--LEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTTR~ 309 (991)
=||||||+..+....|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 589999996654344432 33333221 234568888874
No 234
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.49 E-value=0.025 Score=58.87 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=90.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccce-EEEEecCCCC-hHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLR-MWVCVSDIFD-VTTIVEK 241 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~ 241 (991)
..++|-.++.+++-.++..... -+...-|.|+|+.|.|||+|...+..+ .+.|... +-|....... -+-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 3488888888888887764321 113346789999999999998777765 2333322 2233332222 1223444
Q ss_pred HHHHc----cCCCCcccCHHHHHHHHHhHhC------CceeEEEeccccccChHHHHHHHHH----hc-CCCCCcEEEEe
Q 001955 242 MIRSA----TNRESEKLDLDQLQERLRGEID------GKRYLLVLDDVWNENRDKWLELEAL----LM-NGVSGSKIVVT 306 (991)
Q Consensus 242 i~~~l----~~~~~~~~~~~~l~~~l~~~L~------~kr~LlVlDdv~~~~~~~~~~l~~~----l~-~~~~gs~iivT 306 (991)
|..++ ........+..+....+-..|+ +-++++|+|..+-.-...-..+... -. ...|-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44443 3222112222233333333332 2358888888754311111112111 11 23467778899
Q ss_pred cCcH-------HHHHHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 307 TRSE-------RVARITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 307 TR~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
||-. .|-.......++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9953 232233333356567777777777777654
No 235
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.48 E-value=0.014 Score=70.38 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=70.1
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.|...+.... .........+.++|++|+|||++|+.++... .. ..+.++++.-.+... ..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~~-~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT-VS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhccccc-HH
Confidence 357899999999988886321 1112245678999999999999999998732 11 223444443222111 11
Q ss_pred HHHHHccCCCCcc--c-CHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC
Q 001955 241 KMIRSATNRESEK--L-DLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 241 ~i~~~l~~~~~~~--~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
.+ ++ ..+.. . ....+...+++ ...-+|+||++.....+.+..+...+..+
T Consensus 532 ~L---iG-~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 532 RL---IG-APPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HH---cC-CCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 11 12 11111 1 11122222221 23469999999988877788887777543
No 236
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.02 Score=65.39 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
+++-+|+++-+++|++++.-..-..+-+-+++..+|++|||||.+|+.++. .....| +.+++....+..++--.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhcccc
Confidence 455789999999999998632211123568999999999999999999997 343444 234455554544431100
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccc
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWN 281 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 281 (991)
..--..-...+++.|++. +...=|+.||.|+.
T Consensus 485 ------RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 ------RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ------eeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 000111123344444443 23456888999954
No 237
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.46 E-value=0.041 Score=67.50 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=94.6
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.+..++.+.+.+.-.-.. .....+-+.++|++|.|||++|+++++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 34678888877777765421100 0123455889999999999999999984 22222 22221 1
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc--------Ch----HHHHHHHHHhcC--CCCCcE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE--------NR----DKWLELEALLMN--GVSGSK 302 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ 302 (991)
+ ++....+ .....+...+...-+..+.+|+||+++.- .. ....++...+.. ...+..
T Consensus 522 ~----l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----HhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111111 11122222233333456799999998531 00 111223333332 123455
Q ss_pred EEEecCcHHHHHH--h---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 303 IVVTTRSERVARI--T---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 303 iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
||.||...+.... . .....+.++..+.++-.++|..+...... ....++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHcCCCC
Confidence 7777766554322 1 23446778888888888898766533221 111222 55667777654
No 238
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.013 Score=66.39 Aligned_cols=187 Identities=13% Similarity=0.167 Sum_probs=110.3
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
++||-+.-.+.|...+.... -..--...|+-|+||||+|+.++.-.--. -+ ....++..-..-+.|..
T Consensus 17 evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhhc
Confidence 47999999999998887542 23345678999999999998888521100 01 01111111122222222
Q ss_pred HccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH-
Q 001955 245 SATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA- 313 (991)
Q Consensus 245 ~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~- 313 (991)
.-.. +......++++.+.+.+. .+++-=+.|+|.|...+...|..+...+....+..+.|+.|.+.+ +.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1000 011112333333333222 235555889999998888899999888877777777777777643 22
Q ss_pred HHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 314 RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
...+....|.++.++.++-...+...+-..+...+ .+...-|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCCh
Confidence 22233447889999999888888877755443222 233455666666543
No 239
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.45 E-value=0.013 Score=55.65 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 240
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.43 E-value=0.0021 Score=58.96 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999997
No 241
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.41 E-value=0.037 Score=63.33 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=90.6
Q ss_pred ceeecchhHHHHHHHHhC---CCC-CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLD---SSE-SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~---~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
++.|.+.-++.+...... ... ..-...+-|.++|++|.|||.+|+.+++.. ...| +-+..+. +.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l~- 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------LF- 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------hc-
Confidence 467777666555542211 000 001245678999999999999999999842 2111 1222211 11
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC--------hH----HHHHHHHHhcCCCCCcEEEEecC
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN--------RD----KWLELEALLMNGVSGSKIVVTTR 308 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------~~----~~~~l~~~l~~~~~gs~iivTTR 308 (991)
....+ .....+.+.+...-...+.+|++|+++..- .. ....+...+.....+--||.||.
T Consensus 297 ---~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 297 ---GGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ---ccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 11100 011222222222223478999999996320 00 01112222333334445667776
Q ss_pred cHHHH-----HHhCCCCceecCCCChHHHHHHHHHHHccCCCCC-CChhHHHHHHHHHhhcCCch
Q 001955 309 SERVA-----RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEP-KDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 309 ~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~-~~~~~~~~~~~I~~~c~GlP 367 (991)
+.... .....+..+.++.-+.++-.++|..+........ ...++ ..+++.+.|.-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl----~~La~~T~GfS 429 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI----KKLSKLSNKFS 429 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH----HHHHhhcCCCC
Confidence 55321 1123344677888888999999988765432211 11222 45666665554
No 242
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.40 E-value=0.022 Score=55.87 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.++||-++.++++.-.-.+ ++..-+.|.||||+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 3589999998888666553 2567789999999999998887776
No 243
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.40 E-value=0.013 Score=60.56 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=34.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 5679999999999999999888863 22334567899887 5555443
No 244
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.40 E-value=0.016 Score=67.57 Aligned_cols=43 Identities=33% Similarity=0.469 Sum_probs=35.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877543 234568999999999999999986
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.39 E-value=0.032 Score=55.14 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=61.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc--CCC------------C-cccCH
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT--NRE------------S-EKLDL 256 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~------------~-~~~~~ 256 (991)
.+++|.|..|.|||||++.++..... -.+.+++.-. +........-..++ .+. . ....-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 48999999999999999999974221 1223332211 11110001111110 000 0 00111
Q ss_pred HHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 257 DQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 257 ~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+...-.+...+..++=++++|+.... +......+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22222345556677788999997543 33344444444433234678899998877664
No 246
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.38 E-value=0.042 Score=52.07 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
.+++|+|..|.|||||++.+..... ...+.+|+.-.. .+.- ......-+...-.+...+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999987422 123333332100 0000 0001111222223445556677
Q ss_pred eEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 272 YLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 272 ~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
-++++|+--.. +......+...+... +..||++|.+.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 78999987432 444555555555443 3468888887665543
No 247
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.005 Score=64.25 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=46.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
..-+.++|.+|+|||.||.++.+..- +..+ .+.++++ .+++.++...... . .....|.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----G----RLEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHh-hc
Confidence 34589999999999999999998533 2222 3455543 3455555544432 1 1112222222 23
Q ss_pred eeEEEeccccccChHHH
Q 001955 271 RYLLVLDDVWNENRDKW 287 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~ 287 (991)
-=||||||+-.+....|
T Consensus 168 ~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 168 VDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCEEEEecccCccCCHH
Confidence 34899999966544444
No 248
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.37 E-value=0.0045 Score=59.52 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=40.7
Q ss_pred ccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccc
Q 001955 771 VTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFAC 833 (991)
Q Consensus 771 l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~ 833 (991)
+.+...++|++|. ...++.|..++.|..|.+.+ |.|....+.-...+|+|..|.+.++
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~n----NrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNN----NRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecC----CcceeeccchhhhccccceEEecCc
Confidence 4466778888884 45567777888999999987 6665444444446777888877766
No 249
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.36 E-value=0.0053 Score=59.81 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc-ccccceEEEEecCCCCh---HHHHHHHHHHccCCCCcccCHHHHHHHHHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK-THFNLRMWVCVSDIFDV---TTIVEKMIRSATNRESEKLDLDQLQERLRG 265 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~---~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 265 (991)
...++.+.|+.|+|||.+|+.+.+. .. +.....+-++++.-... ...+........ .... .
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~------~~v~-------~ 66 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPP------GYVG-------A 66 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT------CHHH-------H
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHHhhhhhhhhccc------ceee-------c
Confidence 3568899999999999999999873 22 33344555555543331 111111111110 0000 0
Q ss_pred HhCCceeEEEeccccccCh-----------HHHHHHHHHhcCC
Q 001955 266 EIDGKRYLLVLDDVWNENR-----------DKWLELEALLMNG 297 (991)
Q Consensus 266 ~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~ 297 (991)
...-+|+||+++.... ..|..+...+..+
T Consensus 67 ---~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g 106 (171)
T PF07724_consen 67 ---EEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGG 106 (171)
T ss_dssp ---HHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred ---cchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhccc
Confidence 1122999999999888 7788888877543
No 250
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.34 E-value=0.01 Score=61.95 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccccc----ccceEEEEecCCCChHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH----FNLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 239 (991)
.-.++.|+|.+|+|||++|.+++-....... -..++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 5679999999999999999988743222221 3578999988877765543
No 251
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.33 E-value=0.023 Score=54.06 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=62.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC---CCChHHHHHHHHHHc-----cCC-----CCccc---C
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD---IFDVTTIVEKMIRSA-----TNR-----ESEKL---D 255 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~-----~~~~~---~ 255 (991)
+.|-|++..|.||||+|-..+- +...+=..+.++.+-+ ......+++.+ ..+ +.. ..... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788889999999999966654 2222212334443322 22333333332 111 000 00001 1
Q ss_pred HHHHHHHHHhHhCC-ceeEEEecccccc---ChHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 256 LDQLQERLRGEIDG-KRYLLVLDDVWNE---NRDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 256 ~~~l~~~l~~~L~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
.....+..++.+.. +-=|+|||++-.. ..-..+++...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223333444444 4459999998432 22344567777777777889999999853
No 252
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.31 E-value=0.021 Score=59.14 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccc------cceEEEEecCCCChHHHHHHHHHHccCCC---------Cccc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF------NLRMWVCVSDIFDVTTIVEKMIRSATNRE---------SEKL 254 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~ 254 (991)
.-.++.|+|.+|+|||++|.+++... ...- ..++|++....++...+. ++.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 56799999999999999998887531 1122 457899887777765543 3333322110 1123
Q ss_pred CHHHHHHHHHhHhC----CceeEEEecccc
Q 001955 255 DLDQLQERLRGEID----GKRYLLVLDDVW 280 (991)
Q Consensus 255 ~~~~l~~~l~~~L~----~kr~LlVlDdv~ 280 (991)
+.+++...+.+... .+.-++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 44555555544432 234478888873
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.30 E-value=0.027 Score=54.75 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=28.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD 234 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 234 (991)
++.|+|.+|+||||+++.+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998732 22334567777655443
No 254
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.06 Score=55.09 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=69.5
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcc-cc---cc-------c---cceEEEEecCCC------Ch----------------
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDED-VK---TH-------F---NLRMWVCVSDIF------DV---------------- 235 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~-~~---~~-------F---~~~~wv~~s~~~------~~---------------- 235 (991)
.+++|+|+.|.|||||.+.+.--.. .+ .. + ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987211 00 00 1 234555321111 11
Q ss_pred ------HHHHHHHHHHccCCC------CcccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC-CCCCc
Q 001955 236 ------TTIVEKMIRSATNRE------SEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN-GVSGS 301 (991)
Q Consensus 236 ------~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs 301 (991)
++...+.++.++... .+...-+.-...|.+.|..++=|+|||.--.. |...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 234445555554221 12222333344567888899999999984221 22222333333322 11388
Q ss_pred EEEEecCcHHHHHH
Q 001955 302 KIVVTTRSERVARI 315 (991)
Q Consensus 302 ~iivTTR~~~v~~~ 315 (991)
.||++|-+-.....
T Consensus 191 tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 TVLMVTHDLGLVMA 204 (254)
T ss_pred EEEEEeCCcHHhHh
Confidence 99999998665443
No 255
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.26 E-value=0.043 Score=54.38 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=66.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC--CCChHHH------HHHHHHHccCCC-----Cc-ccCH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD--IFDVTTI------VEKMIRSATNRE-----SE-KLDL 256 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~------~~~i~~~l~~~~-----~~-~~~~ 256 (991)
-.+++|.|..|.|||||++.++... ....+.+++.-.+ ..+.... ..++++.++... .. ...-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999999742 2234444442111 1122111 112344443211 11 1111
Q ss_pred HHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCC-C-CcEEEEecCcHHHHHH
Q 001955 257 DQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGV-S-GSKIVVTTRSERVARI 315 (991)
Q Consensus 257 ~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~-gs~iivTTR~~~v~~~ 315 (991)
+...-.+...+...+-++++|+--.. +......+...+..-. . |..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22223345556677889999997432 3344445555444322 2 6788888888765433
No 256
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.26 E-value=0.0099 Score=59.63 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=52.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH-h--
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE-I-- 267 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L-- 267 (991)
-++..|.|.+|.||||+++.+....... ...+.+..........+... .+. ....+.......... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~----~~~---~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAKELREK----TGI---EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHHHHHHh----hCc---chhhHHHHHhcCCcccccc
Confidence 3578899999999999999887632222 12333333332222222222 211 111111110000000 0
Q ss_pred ---CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC
Q 001955 268 ---DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR 308 (991)
Q Consensus 268 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 308 (991)
..++-+||+|++...+...+..+...... .|+|+|+.==
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 13446999999988877777777665554 4778876543
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.25 E-value=0.013 Score=60.97 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCC-ChHHHHHHHHHHccCC-------CCcccCHH----
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIF-DVTTIVEKMIRSATNR-------ESEKLDLD---- 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 257 (991)
-+-++|.|.+|+||||||+.+++. ++.+|+ .++++-+.+.. +..++.+++.+.-..+ ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999984 444554 45556665543 4556666665431110 01111111
Q ss_pred -HHHHHHHhHh---CCceeEEEeccc
Q 001955 258 -QLQERLRGEI---DGKRYLLVLDDV 279 (991)
Q Consensus 258 -~l~~~l~~~L---~~kr~LlVlDdv 279 (991)
...-.+.+++ +++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344555 388999999998
No 258
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.043 Score=53.84 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=62.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC--CChHHHHHHHHHHcc--CCCCc----------ccCH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI--FDVTTIVEKMIRSAT--NRESE----------KLDL 256 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~--~~~~~----------~~~~ 256 (991)
-.+++|.|..|.|||||++.++.-.. ...+.+++.-... ...... + ..++ .+... ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 35899999999999999999997422 2233343321110 011111 1 1111 00000 0001
Q ss_pred HHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 257 DQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 257 ~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...-.+...+..++=+++||+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222344556667789999997542 334444555544433335678899988776654
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00034 Score=70.02 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccc--ccccccccCcEE
Q 001955 574 FKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELP--RDIGKMVSLRHL 651 (991)
Q Consensus 574 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L 651 (991)
+.+.+.|++.+|.+..+ ..+.+|+.|++|.|+-|. ++.+.. +..+++|+.|.|+.|. +..+- .-+.+|++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 34455566666666554 234456666666666665 555433 5566666666666532 33222 124566677777
Q ss_pred eeccccccCcCCcC-----CCCCCCCCcCCc
Q 001955 652 AIESCLSLTDMPNG-----LGQLTNLRTLPL 677 (991)
Q Consensus 652 ~l~~~~~~~~lp~~-----l~~L~~L~~L~l 677 (991)
.|..|+..+.-+.. +..|++|+.|+-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 77666555444432 345666666654
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.072 Score=57.96 Aligned_cols=113 Identities=10% Similarity=0.056 Sum_probs=57.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC--hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD--VTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
+.++|+++|++|+||||++..++.... ... ..+..++.. .+. ..+-++...+.++-......+.+.+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 458999999999999999988886321 111 234445443 332 222333333444322222335555655554432
Q ss_pred CC-ceeEEEecccccc--ChHHHHHHHHHhcCCCCCcEEEE
Q 001955 268 DG-KRYLLVLDDVWNE--NRDKWLELEALLMNGVSGSKIVV 305 (991)
Q Consensus 268 ~~-kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiv 305 (991)
.. +.=+|++|-.-.. +......+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 2346777876432 22334445554443333333443
No 261
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.19 E-value=0.097 Score=49.06 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHhhchhhHH
Q 001955 2 AEGLLFDTVGKILEVLASQIFHEIGLAYGVQDDISNLRDTVDTIQAVLLDAEDKHSRKDHAVTIWLRRLKDAVYAAEDLL 81 (991)
Q Consensus 2 a~~~~~~~v~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~l 81 (991)
||.+++|+++.+++.+...+.+........+.-.++|...++.|.-++++.+......+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999887653334343666789999999999999
Q ss_pred HHhh
Q 001955 82 DDFS 85 (991)
Q Consensus 82 d~~~ 85 (991)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8874
No 262
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.19 E-value=0.0004 Score=78.43 Aligned_cols=107 Identities=25% Similarity=0.269 Sum_probs=81.0
Q ss_pred hhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCcc-ccCCCCccEEEccCCCCccccchh
Q 001955 539 TALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSL-IGKLKHLRYFNLSHNADIKSLPDS 617 (991)
Q Consensus 539 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~lP~~ 617 (991)
.++.-++.|++|++..|.... +. .+..|+.|+.|||++|.+..+|.. ...+ +|..|.|++|. +.++-.
T Consensus 181 ~SLqll~ale~LnLshNk~~~-------v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g- 249 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTK-------VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG- 249 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhh-------hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh-
Confidence 344556778888888775543 22 568899999999999999988752 2334 49999999998 777754
Q ss_pred hhcccCCCEEeCCCCCCCcccc--ccccccccCcEEeecccc
Q 001955 618 VSRLLNLQTLDLSCCDDLVELP--RDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 618 i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~ 657 (991)
|.+|.+|+.||+++|- +.... .-++.|..|+.|++.+|+
T Consensus 250 ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8999999999999953 33322 236778899999999984
No 263
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.026 Score=54.83 Aligned_cols=117 Identities=10% Similarity=0.044 Sum_probs=63.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC--CChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI--FDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
.+++|.|..|.|||||.+.++... ....+.+++.-... .+..+..+ ..++- ......-+...-.+...+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHhc
Confidence 489999999999999999999642 22344455432111 11111111 11110 00111122223344555666
Q ss_pred ceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 270 KRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 270 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
++-++++|+--.. +......+...+... ..|..||++|.+......
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7888899997432 444444555554332 246688888888764433
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.15 E-value=0.064 Score=52.26 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=60.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccc-ccc--ccc---eEEEEecCCCC--hHHHHHHHHHHccCCCCcccCHHHHHHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDV-KTH--FNL---RMWVCVSDIFD--VTTIVEKMIRSATNRESEKLDLDQLQER 262 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~---~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 262 (991)
-.+++|+|..|.|||||++.+...... .+. ++. +.++ .+... ...+...+.-. .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 358999999999999999999974221 111 111 2222 22211 11222222210 11111122223334
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+...+..++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 45555567778888886432 333444454444433 457888888876553
No 265
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.12 E-value=0.035 Score=54.36 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=61.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCc---ccccc---cc--ceEEEEecCCCChHHHHHHHHHHccCCCC------cccC-
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDE---DVKTH---FN--LRMWVCVSDIFDVTTIVEKMIRSATNRES------EKLD- 255 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~- 255 (991)
-.+++|+|+.|.|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... ....
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999886321 11111 10 12222 21 345555542211 1111
Q ss_pred HHHHHHHHHhHhCCc--eeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHH
Q 001955 256 LDQLQERLRGEIDGK--RYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVAR 314 (991)
Q Consensus 256 ~~~l~~~l~~~L~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 314 (991)
-+...-.+...+..+ +=++++|+--.. +......+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122222344555556 678888886432 334444444444332 24678999999877654
No 266
>PHA00729 NTP-binding motif containing protein
Probab=96.10 E-value=0.014 Score=58.70 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999987
No 267
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.043 Score=65.88 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=74.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCC--CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEI--ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
..++|.++.+..|.+.+......-. .....+.+.|+.|+|||-||++++. .+-+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 4578888888888888875432111 2567788899999999999998886 2322233334444333 222
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHhCCcee-EEEeccccccChHHHHHHHHHhcCC
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEIDGKRY-LLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
...+.+..+.-.. .+-...|.+.++.++| +|+||||+..+......+...+..+
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2233222211111 1222355566667765 7779999988877766666666554
No 268
>PRK13695 putative NTPase; Provisional
Probab=96.10 E-value=0.0056 Score=60.35 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 269
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.06 E-value=0.072 Score=52.29 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=72.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEec-------------------CCCC-----------------
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVS-------------------DIFD----------------- 234 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-------------------~~~~----------------- 234 (991)
-.|+.|+|+.|+|||||.|.+..-+... .+.+|+.-. +.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 3589999999999999999998643322 344554321 1111
Q ss_pred --------hHHHHHHHHHHccCCC-----C-cccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC-CC
Q 001955 235 --------VTTIVEKMIRSATNRE-----S-EKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN-GV 298 (991)
Q Consensus 235 --------~~~~~~~i~~~l~~~~-----~-~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 298 (991)
.++...++++.++..+ + ....-++-.-.|.+.|.=++=++.||..-.. |++...++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 1222333344443211 1 1223344455677888888889999998554 44444444443332 34
Q ss_pred CCcEEEEecCcHHHHHHhC
Q 001955 299 SGSKIVVTTRSERVARITS 317 (991)
Q Consensus 299 ~gs~iivTTR~~~v~~~~~ 317 (991)
.|-.+|+.|....-|..+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 6777888888776665543
No 270
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.05 E-value=0.039 Score=54.22 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=60.4
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC--CChHHHHHHHHHHccCCCCc----------ccCHHHH
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI--FDVTTIVEKMIRSATNRESE----------KLDLDQL 259 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~----------~~~~~~l 259 (991)
.+++|+|..|.|||||++.++... ....+.+++.-... .........+ ..+ .+... ...-+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~-~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHV-GYL-PQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhhe-EEE-CCCCccccCcHHHHCcCHHHHH
Confidence 489999999999999999999632 12233333321110 1111111110 000 00000 0111122
Q ss_pred HHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHH
Q 001955 260 QERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVAR 314 (991)
Q Consensus 260 ~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~ 314 (991)
.-.+...+..++=++++|+.... +......+...+... ..|..||++|.+.+...
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22344555567778899997542 334444444444332 24678888888877654
No 271
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.04 E-value=0.027 Score=57.85 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=31.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD 234 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 234 (991)
.-.++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999888863 222223567887654443
No 272
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.03 E-value=0.027 Score=59.37 Aligned_cols=133 Identities=23% Similarity=0.298 Sum_probs=71.9
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC-ccccccccceEE----EEecCCC-----Ch
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND-EDVKTHFNLRMW----VCVSDIF-----DV 235 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~w----v~~s~~~-----~~ 235 (991)
+-+|..+-.--.++|.++ .+..|.+.|.+|.|||.||-+..-. ...++.|..++- +.+.+.. +.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345667777777888754 7889999999999999888544422 112334433221 2222221 11
Q ss_pred HHHH----HHH---HHHccCCCCcccCHHHHHHHH---------HhHhCCc---eeEEEeccccccChHHHHHHHHHhcC
Q 001955 236 TTIV----EKM---IRSATNRESEKLDLDQLQERL---------RGEIDGK---RYLLVLDDVWNENRDKWLELEALLMN 296 (991)
Q Consensus 236 ~~~~----~~i---~~~l~~~~~~~~~~~~l~~~l---------~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~ 296 (991)
++-+ ..| ++.+.... ......+...+ ..+.+++ .-+|++|...+-.+. ++...+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~--~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPN--EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhccc--ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHh
Confidence 1111 111 22222111 11111222221 1234554 458999999876543 45555667
Q ss_pred CCCCcEEEEecCc
Q 001955 297 GVSGSKIVVTTRS 309 (991)
Q Consensus 297 ~~~gs~iivTTR~ 309 (991)
.+.||||+.|---
T Consensus 375 ~G~GsKIVl~gd~ 387 (436)
T COG1875 375 AGEGSKIVLTGDP 387 (436)
T ss_pred ccCCCEEEEcCCH
Confidence 7899999988653
No 273
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.01 E-value=0.013 Score=57.02 Aligned_cols=152 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcc---cCHHHHHHHHHhHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEK---LDLDQLQERLRGEIDG 269 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~~~L~~ 269 (991)
++.|.|.+|+||||+|..+..... ..++++.-...++. +..+.+..........- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999998886311 12344443333333 34444433332221111 1111244444443332
Q ss_pred ceeEEEecccccc-------Ch-HHHHH----HHHHhcCCCCCcEEEEecCcHHHHHHhCCCCceecCCCChHHHHHHHH
Q 001955 270 KRYLLVLDDVWNE-------NR-DKWLE----LEALLMNGVSGSKIVVTTRSERVARITSKLPFHALRGLPEDMSWSLFT 337 (991)
Q Consensus 270 kr~LlVlDdv~~~-------~~-~~~~~----l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (991)
.-++|+|.+..- +. ..|.. +...+. ..+..+|+|+... -....+.+..-+.|.
T Consensus 77 -~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 -GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 337888987210 10 12222 222232 2455667766531 123334445556666
Q ss_pred HHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 338 RMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
...+. -++.+...|.++..-..|+|+-+
T Consensus 142 d~lG~-----lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAGR-----LNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHH-----HHHHHHHHCCEEEEEeCCCcEec
Confidence 55432 12334444455555567777644
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.00 E-value=0.013 Score=58.97 Aligned_cols=110 Identities=12% Similarity=0.193 Sum_probs=57.5
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH-HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT-TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
++|.|+|+.|+||||+++.+... ........++.- .++.... .-...+..+. . ...+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~---~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQR---E-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeec---c-cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999887763 222233344332 2221100 0000011100 0 0111223445566777667
Q ss_pred eeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHH
Q 001955 271 RYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVA 313 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 313 (991)
+=+|++|++.+. +......... ..|-.++.|+-...+.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 779999999654 3333322222 2455677777665444
No 275
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.99 E-value=0.094 Score=50.29 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=72.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe---c------------------CC----------------
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV---S------------------DI---------------- 232 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s------------------~~---------------- 232 (991)
.-..+.++|++|.||||+.+.+|...+.. .+.+|+.- + ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 34589999999999999999999754322 22333321 1 00
Q ss_pred -----CChHHHH---HHHHHHccCCC------CcccCHHHHHHHHHhHhCCceeEEEeccccc-cCh-HHHHHHHHHhcC
Q 001955 233 -----FDVTTIV---EKMIRSATNRE------SEKLDLDQLQERLRGEIDGKRYLLVLDDVWN-ENR-DKWLELEALLMN 296 (991)
Q Consensus 233 -----~~~~~~~---~~i~~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~-~~~~~l~~~l~~ 296 (991)
....++. .+.++.++... .+...-++-...|.+.+-+++-+++=|.--. .++ ..|+- ...|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHH
Confidence 1112222 22233333211 1223344555567777778899999886421 122 44544 333433
Q ss_pred -CCCCcEEEEecCcHHHHHHhC
Q 001955 297 -GVSGSKIVVTTRSERVARITS 317 (991)
Q Consensus 297 -~~~gs~iivTTR~~~v~~~~~ 317 (991)
+..|..|+++|-+.++.+.+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 457999999999998877664
No 276
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.99 E-value=0.065 Score=52.49 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=57.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE------ecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC------VSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLR 264 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 264 (991)
-.+++|+|..|.|||||++.+..... ...+.+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 35899999999999999999986422 122333221 111111 111122223345
Q ss_pred hHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CC-CcEEEEecCcHHHHHH
Q 001955 265 GEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VS-GSKIVVTTRSERVARI 315 (991)
Q Consensus 265 ~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTTR~~~v~~~ 315 (991)
..+..++-++++|+--.. +......+...+... .. +..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 556667788999986432 333334444444331 12 3568888887665543
No 277
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.98 E-value=0.069 Score=54.39 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.98 E-value=0.018 Score=61.64 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=54.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHH
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERL 263 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 263 (991)
+.-+++-|+|++|+||||||.++... ....-..++|++....++.. .+++++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 36689999999999999999887753 22233456788877665553 234443211 1223455555555
Q ss_pred HhHhC-CceeEEEecccc
Q 001955 264 RGEID-GKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~-~kr~LlVlDdv~ 280 (991)
...++ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 456689999984
No 279
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.00073 Score=67.70 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccch--hhhcc
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD--SVSRL 621 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~--~i~~L 621 (991)
+.+.+.|+..++...+ -.++.+++.|.+|.|+-|.|+.+ ..+..|.+|+.|.|+.|. +..+-+ -+.++
T Consensus 18 l~~vkKLNcwg~~L~D--------Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--------ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccH--------HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcC
Confidence 3455666666665544 23567899999999999999988 458899999999999998 666544 36789
Q ss_pred cCCCEEeCCCCCCCccccc-----cccccccCcEEe
Q 001955 622 LNLQTLDLSCCDDLVELPR-----DIGKMVSLRHLA 652 (991)
Q Consensus 622 ~~L~~L~L~~~~~~~~lp~-----~i~~L~~L~~L~ 652 (991)
++|++|.|..|.-.+.-+. -+..|++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999988765555443 245678888886
No 280
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.97 E-value=0.018 Score=61.60 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=54.3
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHH
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERL 263 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 263 (991)
+.-+++-|+|++|+||||||.+++-. ....-..++|++....+++. .++.++.+. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35679999999999999999887753 22233567899887766653 233333211 1223455555555
Q ss_pred HhHhC-CceeEEEecccc
Q 001955 264 RGEID-GKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~-~kr~LlVlDdv~ 280 (991)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55544 346689999974
No 281
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.96 E-value=0.049 Score=55.16 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=101.6
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCc----cccccccceEEEEecCC-CChHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDE----DVKTHFNLRMWVCVSDI-FDVTTIVE 240 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~-~~~~~~~~ 240 (991)
+.++++....+...... .+..-+.++|+.|.||-|.+..+.+.. -.+-.-+.+.|.+-+.. ..+..+-.
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 55666666666665442 256778999999999999876555431 11122234445443332 00000000
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhH-------hCC-cee-EEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGE-------IDG-KRY-LLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE- 310 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~-------L~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~- 310 (991)
.-.-++.+.+....|.--+++.+++. .++ +.| ++|+-.+++-..+.-..++.....-...+|+|+...+.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 00000111111111222222222211 112 334 66777776655566666766665545677877754331
Q ss_pred HHHHHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 311 RVARIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 311 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
.+.... +.--.+.+...+++|-...+++.+-..+-.- | ++++.+|+++++|.--
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLR 223 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHH
Confidence 122111 1122577899999999999988775544321 2 5788999999988653
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.073 Score=60.91 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=48.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC--ChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF--DVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
..+-|.|.|+.|+|||+||+++++... +...-.+.+|+++.-. ..+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 456789999999999999999998543 4444455667665432 12222221 222334455
Q ss_pred CCceeEEEecccc
Q 001955 268 DGKRYLLVLDDVW 280 (991)
Q Consensus 268 ~~kr~LlVlDdv~ 280 (991)
.-.+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6688999999984
No 283
>PRK08233 hypothetical protein; Provisional
Probab=95.96 E-value=0.021 Score=56.76 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 284
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.95 E-value=0.019 Score=60.19 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=39.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc----ccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK----THFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
.-.+.=|+|.+|+|||.||.+++-..... +.=..++|++-...|+.+++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 44689999999999999997776322221 112358999998889888775 466554
No 285
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.95 E-value=0.029 Score=61.28 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=73.6
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
.++|+...++++.+.+..... ...-|.|+|..|+||+++|+.++....-. -..-+.|++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCC-HHHHHHHHcc
Confidence 489999999998888775433 23458899999999999999998631111 1122344444322 2222222221
Q ss_pred HccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 245 SATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 245 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
.-.+..... . ......+. ....=.|+||||..-.......+...+..+. ...|||.||..
T Consensus 80 ~~~~~~~g~-~-~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGA-Q-KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCc-c-cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 110000000 0 00011111 1233458899998877667777777765432 13588887764
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.021 Score=60.80 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=46.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
..+++.|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999998887632222111234555543211 122333333333332222233444555544443 3
Q ss_pred CceeEEEecc
Q 001955 269 GKRYLLVLDD 278 (991)
Q Consensus 269 ~kr~LlVlDd 278 (991)
+ .=+|++|.
T Consensus 272 ~-~d~vliDt 280 (282)
T TIGR03499 272 D-KDLILIDT 280 (282)
T ss_pred C-CCEEEEeC
Confidence 3 34666775
No 287
>PRK06696 uridine kinase; Validated
Probab=95.94 E-value=0.0078 Score=61.95 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777887776432 236789999999999999999999973
No 288
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.94 E-value=0.022 Score=55.33 Aligned_cols=147 Identities=19% Similarity=0.244 Sum_probs=74.2
Q ss_pred EEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccC----HHHHHHHHHhHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLD----LDQLQERLRGEIDG 269 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~----~~~l~~~l~~~L~~ 269 (991)
+.|.|.+|+|||++|.++... ....++|+.-.+.++.+ +.+.|....... +.... ...+.+.+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhc-C-
Confidence 679999999999999988753 22356677666666543 333333322111 11111 22333333221 2
Q ss_pred ceeEEEeccccc--c------C-------hHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhCCCCceecCCCChHHHHH
Q 001955 270 KRYLLVLDDVWN--E------N-------RDKWLELEALLMNGVSGSKIVVTTRSERVARITSKLPFHALRGLPEDMSWS 334 (991)
Q Consensus 270 kr~LlVlDdv~~--~------~-------~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~ 334 (991)
+.-.+++|.+-. . + ...+..+...+.. .+..+|+||.. | -....+.+..-+
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsnE--v----------G~g~vp~~~~~r 138 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSNE--V----------GLGVVPENALGR 138 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEECC--c----------CCCCCCCCHHHH
Confidence 234799998621 0 0 0111122233322 45566666652 1 133444556666
Q ss_pred HHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 335 LFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 335 Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
.|....+. -++.+...|.+++....|+|+
T Consensus 139 ~f~d~lG~-----lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 139 RFRDELGR-----LNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH-----HHHHHHHHCCEEEEEECCcce
Confidence 67665532 123344444555555577775
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0065 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.--|.|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999974
No 290
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.015 Score=57.80 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH--HccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR--SATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~--~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
.+.+|+|.|.+|+||||+|+.++.. ....+ +.-++.. .+-...-.....+ ...-..+...+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 6789999999999999999999973 33221 1111111 1110100011111 11123456678888888888888
Q ss_pred CCce
Q 001955 268 DGKR 271 (991)
Q Consensus 268 ~~kr 271 (991)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.90 E-value=0.0045 Score=70.01 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=39.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+++|.++.+++|++.|......-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 4899999999999999432211123557999999999999999999997
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.069 Score=60.26 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=53.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC-hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD-VTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
.+++.++|++|+||||++..++........-..+..|+...... ..+.++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999877765322012223455666533211 12223333343432222233445555555543 2
Q ss_pred ceeEEEeccccc--cChHHHHHHHHHhc
Q 001955 270 KRYLLVLDDVWN--ENRDKWLELEALLM 295 (991)
Q Consensus 270 kr~LlVlDdv~~--~~~~~~~~l~~~l~ 295 (991)
..=+|++|..-. .+...-..+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 356788886532 22233344555544
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.045 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...++.++|++|+||||+|.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998886
No 294
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.051 Score=53.44 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=62.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc--CCCC---c---------ccCH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT--NRES---E---------KLDL 256 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~---~---------~~~~ 256 (991)
-.+++|+|..|.|||||++.++.... ...+.+++.-....+.. ......++ .+.. . ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987421 12333333211100000 00001110 0000 0 0111
Q ss_pred HHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 257 DQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 257 ~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
+...-.+...+..++=++++|+--.. |......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 12222455666678889999997442 334444444444332 236789999988776553
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.84 E-value=0.067 Score=54.78 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=74.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC-----CCChHHHHHHHHHHccCCC------CcccCHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD-----IFDVTTIVEKMIRSATNRE------SEKLDLDQ 258 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 258 (991)
.-.+++|+|..|.||||+++.+..- ..--.+.++..-.+ .....+-..++++.++... +..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3458999999999999999999973 22223344443221 1223344566666665322 11111122
Q ss_pred HH-HHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC--CCCCcEEEEecCcHHHHHHhCC
Q 001955 259 LQ-ERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN--GVSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 259 l~-~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~~~ 318 (991)
.+ -.+.+.|.-++-++|.|.--.. +...-.++...+.. ...|-..+..|-+-.++..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22 3456778889999999996432 22223344444433 2357788889999888877654
No 296
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.17 Score=57.00 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=62.5
Q ss_pred CceeecchhHHHHHHHHhCCCCC------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.++=|.++.+.++.+++..-... .-...+-|.++|++|.|||.||++++++..+ -++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch-----
Confidence 34668898888888777542111 0234567889999999999999999985322 23333321
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWN 281 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 281 (991)
+|+..+.+ ...+.+.+.+.+.-..-++++++|+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 23333322 2334455555555667899999999964
No 297
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.81 E-value=0.039 Score=55.42 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=43.6
Q ss_pred EEEEEecCCChHHHHHHHHhCCcccccccc---ceEEEEecCCCChHHHHHHHHHHc----cCCCCcccCHHHHHHHHHh
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFN---LRMWVCVSDIFDVTTIVEKMIRSA----TNRESEKLDLDQLQERLRG 265 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~l~~~l~~ 265 (991)
||+|.|.+|+||||+|+.+...... .... ....+............. .-... .-..+...+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873211 1222 123333222222222211 11111 1123456677888887777
Q ss_pred HhCCceeE
Q 001955 266 EIDGKRYL 273 (991)
Q Consensus 266 ~L~~kr~L 273 (991)
..+++..-
T Consensus 79 L~~g~~i~ 86 (194)
T PF00485_consen 79 LKNGGSIE 86 (194)
T ss_dssp HHTTSCEE
T ss_pred HhCCCccc
Confidence 66666543
No 298
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.80 E-value=0.11 Score=52.22 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=41.5
Q ss_pred HHHHHHHHHhHhCCceeEEEeccccc-cChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHhCC
Q 001955 256 LDQLQERLRGEIDGKRYLLVLDDVWN-ENRDKWLELEALLMNG--VSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 256 ~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~~ 318 (991)
-++-.-.+.+.|-..+-+|+-|+=-. -|...-..+...+... ..|..||+.|-++.+|..+..
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 34455567778888888999997422 1333334454444442 357899999999999986543
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.066 Score=58.69 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=50.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC-CCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD-IFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
.-+++.++|+.|+||||++.++......+.....+..++... .....+.++...+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 346899999999999999998886321111123445555322 1234455555555655433223333334444433 34
Q ss_pred CceeEEEeccccc
Q 001955 269 GKRYLLVLDDVWN 281 (991)
Q Consensus 269 ~kr~LlVlDdv~~ 281 (991)
++ =++++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566888743
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.78 E-value=0.031 Score=55.86 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=35.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATN 248 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 248 (991)
++|+.++|+.|+||||.+.+++.. .+..=..+..++.... ....+.++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 368999999999999888777653 2222334556665322 2344566666777663
No 301
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.77 E-value=0.16 Score=54.33 Aligned_cols=157 Identities=12% Similarity=0.080 Sum_probs=77.8
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRS 245 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 245 (991)
++=.......+...+... +-|.|.|.+|+||||+|+.++.. .... .+.|.++...+..+++..-.-.
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhcCCCceee
Confidence 333334456677776532 35899999999999999999873 2222 2355555554444333221100
Q ss_pred ccCCCC-cccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC--------------CCCcEEEEecCcH
Q 001955 246 ATNRES-EKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG--------------VSGSKIVVTTRSE 310 (991)
Q Consensus 246 l~~~~~-~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------------~~gs~iivTTR~~ 310 (991)
+..... ......-+... ..+...+++|.+....++.-..+...+... .+.-++|.|.-..
T Consensus 114 l~~g~~~~~f~~GpL~~A-----~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWA-----LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ccCCcceeEEecCcchhH-----HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 100000 00000001110 124577889998766555544444444321 2344556655532
Q ss_pred HHH--------------HHhCCC-CceecCCCChHHHHHHHHHHH
Q 001955 311 RVA--------------RITSKL-PFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 311 ~v~--------------~~~~~~-~~~~l~~L~~~~~~~Lf~~~a 340 (991)
... ..++.- -.+.+..++.++-.+++..++
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 200 001111 134577777777777776654
No 302
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.77 E-value=0.069 Score=62.99 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=74.8
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecCCCChHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
...++|....++++.+.+..... ...-|.|+|..|+|||++|+.+++... .... -+.|++.... ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAALS--ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCCC--HHHHHH
Confidence 45699999999999888765432 234578999999999999999997422 1122 2344444322 122222
Q ss_pred HHHHccCCCCcc-cC-HHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecC
Q 001955 242 MIRSATNRESEK-LD-LDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTR 308 (991)
Q Consensus 242 i~~~l~~~~~~~-~~-~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR 308 (991)
.+.+..... .. .......+. ....-.|+||+|..-.......+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111111000 00 000000000 1234568899998877777777777775432 1258888775
Q ss_pred c
Q 001955 309 S 309 (991)
Q Consensus 309 ~ 309 (991)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.75 E-value=0.047 Score=66.49 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=75.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
..++|+...++.+.+.+..-.. ...-|.|+|..|+|||++|+.+++... +. -...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC-hhHhhhhhc
Confidence 3599999999988777664322 334689999999999999999997421 11 1233444444322 111111111
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
....+.... .. ......+. ....=.|+||+|..........+...+..+. .+.|||.||..
T Consensus 449 g~~~~~~~g-~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFTG-AS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Ccccccccc-cc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 111100000 00 11111221 1234579999998877667777777775431 34588888864
No 304
>PRK09354 recA recombinase A; Provisional
Probab=95.74 E-value=0.027 Score=60.84 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=55.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHH
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERL 263 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l 263 (991)
+.-+++-|+|++|+||||||.++... ....-..++|++....++.. .++.++.+. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999887753 22333567899887777653 334443211 1223455555555
Q ss_pred HhHhC-CceeEEEecccc
Q 001955 264 RGEID-GKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~-~kr~LlVlDdv~ 280 (991)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 345689999984
No 305
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.43 Score=47.54 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=102.2
Q ss_pred eeec-chhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 166 IIGR-DGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 166 ~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
+||. ++.+++|.+.+.-+... .-.+++-+.++|++|.|||-||++|+++ .+.-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 5654 67777777666433211 0235677899999999999999999974 23445666542 3
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHH---hcC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEAL---LMN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~~--~~~gs 301 (991)
+.++.+.+- ..-..++.-.-++ ..+-+|++|.++.. +.+.-...... +.. ..+.-
T Consensus 217 lvqk~igeg------srmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIGEG------SRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhhhh------HHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 333332110 0011122222122 35778888887541 11111112222 222 23567
Q ss_pred EEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHH
Q 001955 302 KIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRL 376 (991)
Q Consensus 302 ~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~ 376 (991)
+||+.|..-++... ...+..++.++-+.+.-.++++-+....+- ...-++..+|+++....|.---++.+-|+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-TRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-hcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 89998876555432 223446777777777777777655433222 223456666666655544444455555543
No 306
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.71 E-value=0.094 Score=57.02 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCChHH-HHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKT-AVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
+-++|.++|+.|+||| |||+..++... ...=..+..++...- ....+-++.-++-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4789999999999999 56666665321 122234566654322 2333444455555554444445556666555543
Q ss_pred CCceeEEEecccccc--ChHHHHHHHHHhcCC
Q 001955 268 DGKRYLLVLDDVWNE--NRDKWLELEALLMNG 297 (991)
Q Consensus 268 ~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 297 (991)
++. =+|.+|=+-.. +.....++...+...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 34555655432 334445565555544
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.69 E-value=0.084 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888863
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.069 Score=55.52 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=53.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC------------------
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE------------------ 250 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 250 (991)
+.-.++.|+|.+|+|||++|.++... ..+ .=..++|++..+. ..++.+++ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 35679999999999999999998642 122 2235778887653 44555543 2222100
Q ss_pred --CcccCHHHHHHHHHhHhCC-ceeEEEecccc
Q 001955 251 --SEKLDLDQLQERLRGEIDG-KRYLLVLDDVW 280 (991)
Q Consensus 251 --~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~ 280 (991)
....+.+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999975
No 309
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.67 E-value=0.041 Score=59.25 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=40.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc----ccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK----THFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++-|+|.+|+|||+++.+++-..... ..=..++|++....|+++++.+ +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 56789999999999999997765321111 1123688999998888888754 556554
No 310
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.64 E-value=0.0023 Score=75.03 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCCCccEEEccCCCCccc--cchhhhcccCCCEEeCCCC-CCCcccc----ccccccccCcEEeecccc
Q 001955 596 KLKHLRYFNLSHNADIKS--LPDSVSRLLNLQTLDLSCC-DDLVELP----RDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 596 ~l~~L~~L~L~~~~~~~~--lP~~i~~L~~L~~L~L~~~-~~~~~lp----~~i~~L~~L~~L~l~~~~ 657 (991)
.++.|+.|.+.++..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.|.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 478888888888765554 3344667888888888873 2222222 223345666777776664
No 311
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.012 Score=67.41 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=91.9
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
+.+-+|.++-+++|+++|.-..-...-+-.+++++|+||+|||.|++.+++ .....| +-++++...|..++--.=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 345789999999999998632211122447999999999999999999997 444555 233444444444331100
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh----HHHHHHHHHhcCC-------------CCCcE-EE
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR----DKWLELEALLMNG-------------VSGSK-IV 304 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~-ii 304 (991)
..--..-...+++.+++. +.+.=+++||.++.... +.-..+...|.+. --=|. +.
T Consensus 397 ------RTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 ------RTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ------ccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 000011122344444433 34567899999965321 1111222222211 01133 34
Q ss_pred EecCc-HH-H-HHHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 305 VTTRS-ER-V-ARITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 305 vTTR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
|||-+ -+ + +..++...++++.+.+++|-.+.-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44443 22 2 2233455688899999888777766654
No 312
>PRK13948 shikimate kinase; Provisional
Probab=95.59 E-value=0.12 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 313
>PTZ00301 uridine kinase; Provisional
Probab=95.58 E-value=0.021 Score=57.54 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|.+|+||||+|+.+.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 357999999999999999998876
No 314
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.065 Score=52.97 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=60.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc--CCCC---cc----------cC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT--NRES---EK----------LD 255 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~---~~----------~~ 255 (991)
-.+++|+|..|.|||||++.++-.. ....+.+.+.-........-.......+. .+.. .. .+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3589999999999999999998532 12233333321110000000000111111 0000 00 01
Q ss_pred -HHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCC--CCcEEEEecCcHHHHHH
Q 001955 256 -LDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGV--SGSKIVVTTRSERVARI 315 (991)
Q Consensus 256 -~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~--~gs~iivTTR~~~v~~~ 315 (991)
-+...-.+...+..++=++++|+--.. |......+...+.... .|..||++|.+.+....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 122222344556667788899986432 3444445555444321 25678888888765543
No 315
>PRK05439 pantothenate kinase; Provisional
Probab=95.52 E-value=0.055 Score=57.71 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=45.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCcccccc--ccceEEEEecCCCChHHHHHHHHHHcc-CCCCcccCHHHHHHHHHh
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH--FNLRMWVCVSDIFDVTTIVEKMIRSAT-NRESEKLDLDQLQERLRG 265 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~l~~ 265 (991)
...-+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+-....+..- ..+. ...++..|.+.+.+.|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 46789999999999999999988762 2211 1223334433322222222110 0111 123455677777777776
Q ss_pred HhCCce
Q 001955 266 EIDGKR 271 (991)
Q Consensus 266 ~L~~kr 271 (991)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666654
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.048 Score=61.75 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=46.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC--hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD--VTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
..++|+|+|.+|+||||++.++......+.....+..++.. .+. ..+.+......++.......+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 45799999999999999998877521111112334455442 222 22222222233332222223344555555433
Q ss_pred CCceeEEEecccc
Q 001955 268 DGKRYLLVLDDVW 280 (991)
Q Consensus 268 ~~kr~LlVlDdv~ 280 (991)
. ..=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34577888874
No 317
>PRK07667 uridine kinase; Provisional
Probab=95.47 E-value=0.017 Score=57.88 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+.+.+.+..... ...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~----~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKE----NRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCC----CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666654433 5589999999999999999999873
No 318
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.45 E-value=0.044 Score=59.78 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=69.4
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecCCCChHHHHHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
++|+...++++.+.+..... .-.-|.|+|..|+||+++|+.+++... ....| +-|+++... ...+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~--~~~l~~~-- 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS--ENLLDSE-- 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC--hHHHHHH--
Confidence 46777777777777665432 234589999999999999999986421 11222 334444322 1222221
Q ss_pred HccCCCCcc-cCHHH-HHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 245 SATNRESEK-LDLDQ-LQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 245 ~l~~~~~~~-~~~~~-l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
+.+..... ..... ....+. ....-.|+||+|.+-.......+...+..+. ...|||.||..
T Consensus 70 -lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 -LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11111000 00000 000011 1234568999998776666666777665432 23488888753
No 319
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.44 E-value=0.043 Score=56.07 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=39.1
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHHHHHHcc-CCCCcccCHHHHHHHHHhHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEKMIRSAT-NRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~l~~~L~ 268 (991)
+|+|.|.+|+||||+|+.+...... ... ..+..++...-+.....+.... .+. ...+...+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~-~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR-WPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh-cCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999863211 001 1234444433332222222211 111 112345566666666655544
No 320
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.43 E-value=0.027 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999984
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.41 E-value=0.14 Score=56.65 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=57.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc--cccceEEEEecCCCCh--HHHHHHHHHHccCCCCcccCHHHHHHHHHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT--HFNLRMWVCVSDIFDV--TTIVEKMIRSATNRESEKLDLDQLQERLRG 265 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 265 (991)
..++|.++|+.|+||||.+..++....... +=..+..+++. ++.. ...++...+.++.......+.+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988876322211 11234445443 3332 233555555554433333445566555555
Q ss_pred HhCCceeEEEeccccccC--hHHHHHHHHHhcC
Q 001955 266 EIDGKRYLLVLDDVWNEN--RDKWLELEALLMN 296 (991)
Q Consensus 266 ~L~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~ 296 (991)
. .+.-++++|..-... ......+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 445688889885432 2233445555443
No 322
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.40 E-value=0.063 Score=56.85 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=42.4
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccc--cceEEEEecCCCChHHHHHHHHHHc-cCCCCcccCHHHHHHHHHh
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--NLRMWVCVSDIFDVTTIVEKMIRSA-TNRESEKLDLDQLQERLRG 265 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~~~~~~~l~~~l~~ 265 (991)
....+|+|.|..|+||||+|+.+..- ..... ..+..++...-+.........- .. ....++..+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHH
Confidence 36789999999999999999877541 11111 1233444333222222222210 00 0122455667777777666
Q ss_pred HhCCc
Q 001955 266 EIDGK 270 (991)
Q Consensus 266 ~L~~k 270 (991)
.-.++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 323
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.02 Score=57.57 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=58.9
Q ss_pred ccCCcccEEEccCCCcc-----ccCccccCCCCccEEEccCCCCcc----ccch-------hhhcccCCCEEeCCCCCCC
Q 001955 572 SSFKCLRTLNLSNSEIE-----TVPSLIGKLKHLRYFNLSHNADIK----SLPD-------SVSRLLNLQTLDLSCCDDL 635 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~----~lP~-------~i~~L~~L~~L~L~~~~~~ 635 (991)
.-+..+..++||+|-|. .+...|.+-.+|+..+++.-. .+ ++|+ .+-++++|+..+||.|-.-
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34677888888888775 345566777888888887643 22 3333 3567888999999987666
Q ss_pred cccccc----ccccccCcEEeeccc
Q 001955 636 VELPRD----IGKMVSLRHLAIESC 656 (991)
Q Consensus 636 ~~lp~~----i~~L~~L~~L~l~~~ 656 (991)
...|.. |++-+.|.||.+++|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC
Confidence 566654 455678999998887
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.16 Score=59.39 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=76.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
...+.+.++|++|.|||+||+++++. ....| +.+... .++.+.+ ......+.+.+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~----~l~sk~v---------Gesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS----ELLSKWV---------GESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH----HHhcccc---------chHHHHHHHHHHHHHc
Confidence 35568999999999999999999983 33333 222111 1111111 1112233333444445
Q ss_pred CceeEEEecccccc------C-----hHHHHHHHHHhcCCC--CCcEEEEecCcHHHHHHh-----CCCCceecCCCChH
Q 001955 269 GKRYLLVLDDVWNE------N-----RDKWLELEALLMNGV--SGSKIVVTTRSERVARIT-----SKLPFHALRGLPED 330 (991)
Q Consensus 269 ~kr~LlVlDdv~~~------~-----~~~~~~l~~~l~~~~--~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~ 330 (991)
..+.+|++|.++.- + .....++...+.... .+..||-||-.+...... .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999998531 0 122333444443222 343455566554433221 23446778888999
Q ss_pred HHHHHHHHHHcc
Q 001955 331 MSWSLFTRMAFE 342 (991)
Q Consensus 331 ~~~~Lf~~~a~~ 342 (991)
+..+.|..+.-.
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 325
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.36 E-value=0.044 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.3
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998863
No 326
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.35 E-value=0.068 Score=57.83 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=39.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccc---cc-cccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDV---KT-HFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+||||++..++..... .+ .-..++|++....++..++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 5689999999999999999887642111 11 1135789998887887764 34455443
No 327
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.092 Score=50.65 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=63.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC--hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD--VTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
.+++|+|..|.|||||++.+.... ....+.+++....... .... ...+.-- .....-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-PQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEE-eeCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999742 2334555543322111 1111 1111100 0011112222234555556
Q ss_pred ceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHHh
Q 001955 270 KRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 270 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~ 316 (991)
.+=++++|+.-.. +......+...+... ..+..++++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 7788999997532 333444444444321 1256788888887666554
No 328
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.33 E-value=0.073 Score=62.18 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=76.9
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
...++|+...++++.+.+..... ...-|.|+|..|+|||++|+.+++...- .-...+.|++....+ ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHHH-
Confidence 45699999999999888876443 3456889999999999999999974221 112334555554322 22221
Q ss_pred HHHccCCCCcc-cC-HHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 243 IRSATNRESEK-LD-LDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 243 ~~~l~~~~~~~-~~-~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
.+.+..... .. .......+. . ...--|+||+|..-.......+...+..+. ...|||.||..
T Consensus 257 --~lfG~~~g~~~ga~~~~~g~~~--~-a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 --ELFGHVKGAFTGAISNRSGKFE--L-ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred --HhcCccccccCCCcccCCcchh--h-cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 121111000 00 000000111 1 223347899998877777777777775432 24588888864
No 329
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.31 E-value=0.11 Score=51.62 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=32.5
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
+...+-.++-++++|+--.. +......+...+... ..|..||++|.+......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45556677789999996432 344444555544332 246788999988654443
No 330
>PRK14974 cell division protein FtsY; Provisional
Probab=95.31 E-value=0.15 Score=55.33 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC--hHHHHHHHHHHccCCC---CcccCHHH-HHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD--VTTIVEKMIRSATNRE---SEKLDLDQ-LQERL 263 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~---~~~~~~~~-l~~~l 263 (991)
+..+|.++|++|+||||++..++.... ...+ .++.+. .+.+. ..+.++.....++... ....+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998887775322 1223 233343 33332 2233455555554321 11122222 22333
Q ss_pred HhHhCCceeEEEecccccc--ChHHHHHHHHHhcCCCCCcEEEE
Q 001955 264 RGEIDGKRYLLVLDDVWNE--NRDKWLELEALLMNGVSGSKIVV 305 (991)
Q Consensus 264 ~~~L~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iiv 305 (991)
...-....=++++|-.-.. +...+.++........+...++|
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 3221222238888887543 23344555444333334444444
No 331
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.29 E-value=0.07 Score=57.98 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=41.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccc----cccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDV----KTHFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.+.-|+|.+|+|||+|+.+++-.... .+.-..++|++....|+++++.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 5678899999999999999877632111 11124679999999999888754 555554
No 332
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.29 E-value=0.13 Score=59.27 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=42.0
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC 228 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (991)
+++--.+-++++..||...-.. ....+++.++|++|.||||.++.+++. -.|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 3555566778888888753221 224579999999999999999999974 2355556754
No 333
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.086 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|.|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999974
No 334
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.29 Score=50.20 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=93.5
Q ss_pred CceeecchhHHHHHHHHhCCCC------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
+++.|-+..++.+.+.+.-+-. ......+-|.++|++|.||+.||++|+.... .. |.+||. .+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSS----SD 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSS----SD 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeeh----HH
Confidence 3467888888888776542210 1123467899999999999999999997422 22 233433 23
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhC-CceeEEEecccccc-------ChHHHHHHHHH-hc------CCCCCcE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEID-GKRYLLVLDDVWNE-------NRDKWLELEAL-LM------NGVSGSK 302 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdv~~~-------~~~~~~~l~~~-l~------~~~~gs~ 302 (991)
+..+++.+ .+.+...|.+.-+ +|+-+|++|.++.. +.+.-..+..- |. ....|.-
T Consensus 202 LvSKWmGE----------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 LVSKWMGE----------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHHHHhcc----------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 33333321 2445555554433 68899999998531 11111122211 11 1234555
Q ss_pred EEEecCcHHHHHHhC----CCCceecCCCChHHHHH-HHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 303 IVVTTRSERVARITS----KLPFHALRGLPEDMSWS-LFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 303 iivTTR~~~v~~~~~----~~~~~~l~~L~~~~~~~-Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
|+-.|..+-+....- ..++| =||++..|.. +|.-+.+.....-..+++ +++.++..|.-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIY--IPLPe~~AR~~MF~lhlG~tp~~LT~~d~----~eL~~kTeGyS 335 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIY--IPLPEAHARARMFKLHLGDTPHVLTEQDF----KELARKTEGYS 335 (439)
T ss_pred EEecCCCchhHHHHHHHHhhccee--ccCCcHHHhhhhheeccCCCccccchhhH----HHHHhhcCCCC
Confidence 666676654443211 11233 2566666654 555555433222223444 45555665543
No 335
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.25 E-value=0.012 Score=54.48 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~ 214 (991)
|+|.|++|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 336
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.24 E-value=0.18 Score=60.54 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=70.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
+-|.++|++|.|||++|+.++.. ....| +.++.+. +.. ...+ .....+...+...-...+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~~----~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FVE----MFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hHH----hhhc-----ccHHHHHHHHHHHHhcCC
Confidence 34899999999999999999873 22222 2222211 111 1100 111223333333334567
Q ss_pred eEEEeccccccC----------hHHHHHHH-HHh---cC--CCCCcEEEEecCcHHHHHHh-----CCCCceecCCCChH
Q 001955 272 YLLVLDDVWNEN----------RDKWLELE-ALL---MN--GVSGSKIVVTTRSERVARIT-----SKLPFHALRGLPED 330 (991)
Q Consensus 272 ~LlVlDdv~~~~----------~~~~~~l~-~~l---~~--~~~gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~ 330 (991)
.+|++|+++... ...+.... ..+ .. ...+.-+|.||...+..... .....+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 899999986521 11222222 222 11 12355566688776543321 22346778888888
Q ss_pred HHHHHHHHHHcc
Q 001955 331 MSWSLFTRMAFE 342 (991)
Q Consensus 331 ~~~~Lf~~~a~~ 342 (991)
+-.+++..+...
T Consensus 326 ~R~~Il~~~~~~ 337 (644)
T PRK10733 326 GREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHhhc
Confidence 888888877643
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.23 E-value=0.18 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+-.|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988775
No 338
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.20 E-value=0.13 Score=51.81 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=61.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCc--c-cccc--ccc---------------eEEEEecCCCChHHHHHHHHHHccCCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDE--D-VKTH--FNL---------------RMWVCVSDIFDVTTIVEKMIRSATNRE 250 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~~--F~~---------------~~wv~~s~~~~~~~~~~~i~~~l~~~~ 250 (991)
-.+++|+|..|.|||||++.+.... . ..+. |+. +.++.-....-......+.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~--- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN--- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc---
Confidence 3589999999999999999998751 1 1110 100 112111100000011111111110
Q ss_pred CcccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 251 SEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 251 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
.....-+...-.+...+..++=++++|+.-.. +......+...+... ..|..||++|.+...+..
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 01111122233345556677789999997432 334444454444332 236788889888776653
No 339
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.20 E-value=0.099 Score=57.03 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccccc----ccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH----FNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++-|+|.+|+|||++|.+++-....... =..++|++....+++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5678999999999999999888743211111 14689999988888877654 344443
No 340
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.18 E-value=0.05 Score=55.70 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHh-hhcccCCchhHHHHHHHHHHHhhchhhHHHHhh
Q 001955 8 DTVGKILEVLASQIFHEIGLAYGVQDDISNLRDTVDTIQAVLLDA-EDKHSRKDHAVTIWLRRLKDAVYAAEDLLDDFS 85 (991)
Q Consensus 8 ~~v~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a-e~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~ 85 (991)
+.|+-+++.|-.........+.-++.+++-++.+++.+|.||+.. +..+ ...+....++.++-+.||++|.++|.+.
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~-nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPH-NKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccc-hhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 456677777777766666667778899999999999999999987 4434 2333488999999999999999999764
No 341
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.18 E-value=0.029 Score=54.12 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=49.6
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhh-cccCCCEEeCCCCCCCcccc--ccccccccCcEEe
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVS-RLLNLQTLDLSCCDDLVELP--RDIGKMVSLRHLA 652 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~-~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~ 652 (991)
....+||++|.+..++ .|.+++.|..|.|..|. +..+-..+. -+++|.+|.|.+|+ +.++- .-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 3445666666665543 35556666666666666 444433333 34456666666532 33321 1134455666666
Q ss_pred eccccccCcCCc----CCCCCCCCCcCCccc
Q 001955 653 IESCLSLTDMPN----GLGQLTNLRTLPLFM 679 (991)
Q Consensus 653 l~~~~~~~~lp~----~l~~L~~L~~L~l~~ 679 (991)
+-+|+.. .-+. -+..+++|++|+...
T Consensus 120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 5555221 1111 144556666666543
No 342
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.13 E-value=0.055 Score=59.46 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
..+=+.|||..|.|||.|.-.+|+...++.. .......+..++.+.+............+ .+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~~v----a~~l~~ 126 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPLPQV----ADELAK 126 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccHHHH----HHHHHh
Confidence 5678999999999999999999986433211 01112244444444443222222233333 344456
Q ss_pred ceeEEEeccccccChHHHHHHHHHhcC-CCCCcEEEEecCcH
Q 001955 270 KRYLLVLDDVWNENRDKWLELEALLMN-GVSGSKIVVTTRSE 310 (991)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTTR~~ 310 (991)
+..||.||...-.+..+---+...+.. ...|. |||+|.|.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 677999999855443332222222222 12454 55555553
No 343
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.12 E-value=0.048 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999998874
No 344
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.3 Score=49.10 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC--CCCCcEEEEecCcHHHHHHhCC
Q 001955 262 RLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN--GVSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 262 ~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTTR~~~v~~~~~~ 318 (991)
.|.+.|.-++=+||+|..-.. |...-.++...|.. ...+-.+|+.|.+..++..++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 455667778889999986332 22222233333332 2356678889998877766543
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.11 E-value=0.21 Score=53.23 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=35.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
.-.++.|.|.+|+||||++.+++.... ..+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 345888999999999999988876321 22123577887655 3455665555543
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.10 E-value=0.16 Score=57.24 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=33.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh--HHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV--TTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~ 247 (991)
...+|.++|.+|+||||+|..++.... +..+ .+..|++. .+.+ .+.++.+...++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D-~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAAD-TYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCC-CCCHHHHHHHHHHHHHcC
Confidence 467999999999999999998886422 1222 33344432 2222 344555555554
No 347
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.084 Score=55.26 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=56.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHH-ccCC-CCcccCHH---HHHHHH
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRS-ATNR-ESEKLDLD---QLQERL 263 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~-~~~~~~~~---~l~~~l 263 (991)
+.-+++=|+|+.|+||||+|.+++-. ....-..++|++....++++.+.. +... +..- .....+.+ ++...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46789999999999999999877653 222333789999999998887643 3333 2211 11222333 333444
Q ss_pred HhHhCCceeEEEecccc
Q 001955 264 RGEIDGKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~~kr~LlVlDdv~ 280 (991)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44433445688888883
No 348
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=1.7 Score=46.57 Aligned_cols=153 Identities=7% Similarity=-0.012 Sum_probs=89.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCc--------cccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDE--------DVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQER 262 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 262 (991)
..+..++|..|.||+++|+.+.+.. ....|-+-..++.... .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 4566799999999999998887631 0011111122221101 11122333322
Q ss_pred HHhH----hC-CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHHH-hCCCCceecCCCChHHHHHH
Q 001955 263 LRGE----ID-GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVARI-TSKLPFHALRGLPEDMSWSL 335 (991)
Q Consensus 263 l~~~----L~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~L 335 (991)
+.+. .. +.+=++|+|++..........+...+....+.+.+|++|.+. .+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2221 11 467788889987776677778888888877788877766543 33322 33345788999999998877
Q ss_pred HHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 336 FTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 336 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
+... + . . .+.+..++...+|.--|+..+
T Consensus 158 l~~~--~--~-~-----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSK--N--K-E-----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHc--C--C-C-----hhHHHHHHHHcCCHHHHHHHH
Confidence 7653 1 1 1 133556666677644555554
No 349
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.05 E-value=0.11 Score=56.66 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=40.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccc----ccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVK----THFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++-|+|.+|+|||++|..++-..... ..-..++|++....|+++++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 56788999999999999998776421111 111368999999999888764 5566554
No 350
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.03 E-value=0.11 Score=58.24 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877776
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.01 E-value=0.1 Score=51.78 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 352
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.98 E-value=0.028 Score=53.22 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=26.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC 228 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 228 (991)
..||.|+|.+|+||||||+++.+ +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35899999999999999999997 3333333455554
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.97 E-value=0.15 Score=56.43 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHhHhCCceeEEEeccccccChHHH-HHHHHHhcC-CCCCcEEEEecCcHHHHHHhC
Q 001955 262 RLRGEIDGKRYLLVLDDVWNENRDKW-LELEALLMN-GVSGSKIVVTTRSERVARITS 317 (991)
Q Consensus 262 ~l~~~L~~kr~LlVlDdv~~~~~~~~-~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~ 317 (991)
.+.+.+-+.++|+|||.=...-..+= ..+...+.. ...|+.+||.|..+.+...++
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 35667779999999998643211111 123333322 346777777777777665543
No 354
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.97 E-value=0.016 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 355
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.94 E-value=0.081 Score=53.44 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=50.4
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCC-------CcccCHH------
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRE-------SEKLDLD------ 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~------ 257 (991)
.-++|.|.+|+|||+|+..+.++. .-+.++++.+.+. .+..++.+++...-..+. .+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468999999999999999998743 2234477777654 455666666644311110 0111011
Q ss_pred ---HHHHHHHhHhCCceeEEEeccc
Q 001955 258 ---QLQERLRGEIDGKRYLLVLDDV 279 (991)
Q Consensus 258 ---~l~~~l~~~L~~kr~LlVlDdv 279 (991)
...+++++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12223333 589999999999
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.92 E-value=0.23 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 357
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.92 E-value=0.17 Score=50.41 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=29.3
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
++.|.|.+|+|||++|.++..... + .=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999988765321 1 123467777644 34444443
No 358
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.91 E-value=0.14 Score=55.86 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=40.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc----cccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT----HFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++-|+|.+|+||||++.+++-...... .=..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 567899999999999999988875322110 11368999998888887754 4444443
No 359
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.90 E-value=0.074 Score=54.50 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.9
Q ss_pred EEEEecCCChHHHHHHHHhC
Q 001955 194 IPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~ 213 (991)
|.|.|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999986
No 360
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.89 E-value=0.43 Score=48.47 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=32.9
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++=++++|+-... +......+...+.....|..+|++|.+......
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44445567778899997543 344445555555443346778888888766543
No 361
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.88 E-value=0.25 Score=50.83 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++-++++|+.-.. +......+...+.....+..||++|.+...+..
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 34455667789999997543 344444555555432234678888888776544
No 362
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.87 E-value=0.17 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=94.85 E-value=0.09 Score=59.02 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.++|.+|+||||+|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 364
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.82 E-value=0.2 Score=50.88 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=36.9
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC-CCCCcEEEEecCcHHHHHHhCCCCceecCCC
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN-GVSGSKIVVTTRSERVARITSKLPFHALRGL 327 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L 327 (991)
+...+..++-++++|+--.. +......+...+.. ...|..||++|.+...... ..++.++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 34445566789999996432 34444555555543 2346788999888665443 455666553
No 365
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.82 E-value=0.015 Score=58.66 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=59.5
Q ss_pred cCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCC--CCCccccccccccccCcEEeeccccccCcCCcC--
Q 001955 590 VPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCC--DDLVELPRDIGKMVSLRHLAIESCLSLTDMPNG-- 665 (991)
Q Consensus 590 lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-- 665 (991)
+......+..|++|++.++. +.++- .+-.|++|+.|.++.| .....++.-..++++|++|++++|. +.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccc
Confidence 33344456677777777766 33332 2456899999999998 4556677777788999999999984 332 333
Q ss_pred -CCCCCCCCcCCccccCC
Q 001955 666 -LGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 666 -l~~L~~L~~L~l~~~~~ 682 (991)
+..+.+|..|+++++..
T Consensus 111 pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhhcchhhhhcccCCc
Confidence 44566677777766543
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.81 E-value=0.11 Score=54.77 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=46.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh--HHHHHHHHHHccCCC---CcccCH-HHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV--TTIVEKMIRSATNRE---SEKLDL-DQLQERL 263 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~l~~~l 263 (991)
..+++.++|++|+||||++..++.. ....-..+.+++.. .+.. .+-+....+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999999999888763 22222234555543 3332 233344444444211 111222 2223334
Q ss_pred HhHhCCceeEEEecccc
Q 001955 264 RGEIDGKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~~kr~LlVlDdv~ 280 (991)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 43333444577778763
No 367
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.5 Score=55.87 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred ceeecch---hHHHHHHHHhCCCCCC---CCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 165 DIIGRDG---DKNEIIDRLLDSSESE---IESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 165 ~~vGr~~---~~~~l~~~L~~~~~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
++.|-++ |+++++++|..+..-. ..-++=+.++|++|.|||-||++++-... +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH------
Confidence 4778775 5555666665542110 23456789999999999999999997432 234444431
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC---------------hHHHHHHHHHhcCCC--CCc
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN---------------RDKWLELEALLMNGV--SGS 301 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~--~gs 301 (991)
+.++.+.+.. .....++. ...=.+.+.+|.+|+++... .....++..-+.... .+-
T Consensus 379 --EFvE~~~g~~--asrvr~lf---~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVGVG--ASRVRDLF---PLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhcccc--hHHHHHHH---HHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 2222222111 11122222 22223567888888875321 111222322222222 233
Q ss_pred EEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 302 KIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 302 ~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
-+|-+|...++... -..+..+.++.-+.....+.|.-|+...... .+..++++ |+....|.+=|.
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 34446665555432 2334567788888888999999888654432 23445666 888888887443
No 368
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.12 Score=61.28 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=34.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+.++||++|++++++.|.....+ - -.++|.+|+|||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN----N--PvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN----N--PVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC----C--CeEecCCCCCHHHHHHHHHH
Confidence 34899999999999999865432 2 24679999999999865554
No 369
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.79 E-value=0.42 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 370
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.77 E-value=0.041 Score=55.93 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=37.0
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
+..++++.+.... .+..+|+|.|+||+|||||...+....+.+++=-.++-|+-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556666666433 36789999999999999999888764333333234445555666664443
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.77 E-value=0.14 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.76 E-value=0.015 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhCCcccccccc
Q 001955 194 IPIVGIGGLGKTAVAQLVYNDEDVKTHFN 222 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 222 (991)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999997 4555664
No 373
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.73 E-value=0.17 Score=52.53 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=33.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
.-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 56899999999999999998766421 1 2234677887654 455555543
No 374
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.73 E-value=0.34 Score=49.81 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++=++++|+.... +......+...+..-..+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 34445566778999997543 334444555555443335678888887765543
No 375
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.71 E-value=0.22 Score=51.27 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=31.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
.-.++.|.|.+|.||||+|.++... ..+.. ..++|++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 3459999999999999998655542 11222 345666633 3455665555
No 376
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.25 Score=54.75 Aligned_cols=52 Identities=31% Similarity=0.380 Sum_probs=37.5
Q ss_pred Cceeecc---hhHHHHHHHHhCCCCC---CCCceEEEEEEecCCChHHHHHHHHhCCc
Q 001955 164 EDIIGRD---GDKNEIIDRLLDSSES---EIESVAVIPIVGIGGLGKTAVAQLVYNDE 215 (991)
Q Consensus 164 ~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 215 (991)
+++-|.| .|+++|+++|.++..- ...=++-|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3466776 4677888888765310 01234678999999999999999999753
No 377
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.70 E-value=0.33 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999964
No 378
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.67 E-value=0.028 Score=57.10 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999863
No 379
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.66 E-value=0.031 Score=59.61 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=43.8
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|+|.++.++++++.+...+..-...-+|+.+.|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999866554455779999999999999999988886
No 380
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.36 Score=52.54 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=52.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh-
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI- 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L- 267 (991)
..+++.++|+.|+||||++..++.... ... ..+.+|+..... ...+-++...+.++.......+.+++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 568999999999999999988876321 111 345566654322 2234455555555433222345566655554332
Q ss_pred CCceeEEEeccccc
Q 001955 268 DGKRYLLVLDDVWN 281 (991)
Q Consensus 268 ~~kr~LlVlDdv~~ 281 (991)
.+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 13345777787643
No 381
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.65 E-value=0.085 Score=53.13 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=59.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCccc-------CHHHHHHHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKL-------DLDQLQERL 263 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~l~~~l 263 (991)
.+++.|.|+.|.||||+.+.+.-.. +..+. -.+|.+.. ..-.+...+...++..+.... +..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999998886421 11111 11221110 001222233333222111111 112222111
Q ss_pred HhHhCCceeEEEecccccc-ChHHH----HHHHHHhcCCCCCcEEEEecCcHHHHHHhCC
Q 001955 264 RGEIDGKRYLLVLDDVWNE-NRDKW----LELEALLMNGVSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 264 ~~~L~~kr~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~gs~iivTTR~~~v~~~~~~ 318 (991)
. +..++-|+++|..... +..+. ..+...+.. .|+.+|+||-+.+++.....
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 1 2356789999997432 12221 122233332 37899999999988877654
No 382
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.46 Score=53.75 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=85.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
..-|.+||++|.|||-||++|+|. .+-.| ++|-.+ +++.....+ ....+.+.+++.=...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYVGE---------SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYVGE---------SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHhhh---------HHHHHHHHHHHhhcCC
Confidence 445789999999999999999994 33333 443221 232222211 1223333444444467
Q ss_pred eeEEEecccccc-----ChHHH------HHHHHHhcC--CCCCcEEEEecCcHHHHHH--h---CCCCceecCCCChHHH
Q 001955 271 RYLLVLDDVWNE-----NRDKW------LELEALLMN--GVSGSKIVVTTRSERVARI--T---SKLPFHALRGLPEDMS 332 (991)
Q Consensus 271 r~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~ 332 (991)
+++|+||.++.- +...| .++..-+.. ...|-.||-.|..+++... . .-+...-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998541 11122 223322322 2367778888877665432 1 1223444666677888
Q ss_pred HHHHHHHHccCCCC-CCChhHHHHHHHHHhhcCCch
Q 001955 333 WSLFTRMAFEQGSE-PKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 333 ~~Lf~~~a~~~~~~-~~~~~~~~~~~~I~~~c~GlP 367 (991)
.++++...-....+ ..+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888877542211 223345555442 3455543
No 383
>PRK06547 hypothetical protein; Provisional
Probab=94.64 E-value=0.041 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|+|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999864
No 384
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.64 E-value=0.079 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..|.|.|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999874
No 385
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.63 E-value=0.16 Score=53.35 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=65.6
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE---ecCCCChHHHHHHHHHHccC
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC---VSDIFDVTTIVEKMIRSATN 248 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l~~ 248 (991)
..+.++..+... ....-++|+|+.|.||||+.+.+..... ...+.+++. +....+..++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 344455555532 2457899999999999999999997422 222333332 11111112222111 11100
Q ss_pred CC-C---ccc-CHHHHHHHHHhHhC-CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 249 RE-S---EKL-DLDQLQERLRGEID-GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 249 ~~-~---~~~-~~~~l~~~l~~~L~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
.. . +.. +... ..-+...+. ..+=++++|.+-.. +.+..+...+. .|..||+||-+..+...
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 00 0 000 1111 111222222 47889999998543 44555544443 57789999997665433
No 386
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.62 E-value=0.27 Score=47.45 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=62.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccce--EEEEecCCCChHHHHHHHHHH---ccCC-----CCcc---cCHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLR--MWVCVSDIFDVTTIVEKMIRS---ATNR-----ESEK---LDLD 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--~wv~~s~~~~~~~~~~~i~~~---l~~~-----~~~~---~~~~ 257 (991)
...|-|++-.|.||||.|-.++-. .....+.+. -|+..........+++...-. .+.. .... ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 468888888999999999665542 112222221 133322222333344332000 0100 0000 1122
Q ss_pred HHHHHHHhHhCCc-eeEEEecccccc---ChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 258 QLQERLRGEIDGK-RYLLVLDDVWNE---NRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 258 ~l~~~l~~~L~~k-r~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
+..+..++.+... -=|+|||.+-.. ..-+.+++...+....++.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2333444555444 459999998432 1233446677776666778999999985
No 387
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.61 E-value=0.38 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.+.-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999864
No 388
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.55 E-value=0.034 Score=57.24 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 174 NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
.+++..+....+ +..+|+|.|.||+|||||.-.+-....-+++=-.++-|+-|.+++--.++-+
T Consensus 38 ~~ll~~l~p~tG----~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTG----NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCC----CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 456666665433 7789999999999999999877765444444445566666777776555443
No 389
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.016 Score=34.59 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=10.7
Q ss_pred CccEEEccCCCCccccchhhh
Q 001955 599 HLRYFNLSHNADIKSLPDSVS 619 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~i~ 619 (991)
+|++|+|++|. +..+|.+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35556666654 445555543
No 390
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.55 E-value=0.021 Score=60.37 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcc
Q 001955 174 NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEK 253 (991)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 253 (991)
..+++.+.. .-+-+.++|+.|+|||++++....... ...| ...-+..+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 23 SYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE
T ss_pred HHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC
Confidence 445555554 234578999999999999998886321 1111 1334445544333333322111111100000
Q ss_pred cCHHHHHHHHHhHhCCceeEEEeccccccChHHH
Q 001955 254 LDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKW 287 (991)
Q Consensus 254 ~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~ 287 (991)
. .--.+|+.++++||+.-...+.|
T Consensus 94 ~----------gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 94 Y----------GPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp E----------EEESSSEEEEEEETTT-S---TT
T ss_pred C----------CCCCCcEEEEEecccCCCCCCCC
Confidence 0 00137899999999965543333
No 391
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.54 E-value=0.017 Score=34.47 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=11.0
Q ss_pred ccEEEccCCCccccCccccC
Q 001955 577 LRTLNLSNSEIETVPSLIGK 596 (991)
Q Consensus 577 L~~L~L~~~~i~~lp~~~~~ 596 (991)
|++|+|++|.++.+|+.|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55566666655555554443
No 392
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.54 E-value=0.088 Score=57.84 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=66.9
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
.++|++..+..+...+... +-+.+.|.+|+|||+||+.++.. ... ...+|.+.......+++-...-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCchhH
Confidence 3889888888888777754 35889999999999999999973 222 2356666666666655433322
Q ss_pred HccCCCCcccCHHHHHHHHHh-HhCCceeEEEeccccccChHHHHHHHHHhcC
Q 001955 245 SATNRESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNENRDKWLELEALLMN 296 (991)
Q Consensus 245 ~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 296 (991)
......... ...... ....-+.++++|.++......-..+...+..
T Consensus 92 ~~~~~~~~~------~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGE------FRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCe------EEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 211000000 000000 0011125999999998876555556555543
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.51 E-value=0.36 Score=49.97 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=60.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCC--------C-----------
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNR--------E----------- 250 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~----------- 250 (991)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++.... ..++.+. +++++-. .
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45799999999999999998766421 1 12345678876433 3333322 2221100 0
Q ss_pred -----CcccCHHHHHHHHHhHhCC---ceeEEEecccccc---ChHHHHHHHHHhcC--CCCCcEEEEecC
Q 001955 251 -----SEKLDLDQLQERLRGEIDG---KRYLLVLDDVWNE---NRDKWLELEALLMN--GVSGSKIVVTTR 308 (991)
Q Consensus 251 -----~~~~~~~~l~~~l~~~L~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTR 308 (991)
....+.+++...+.+..+. +.-++|+|.+..- +...-..+...+.. ...|..+++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0123456666666665543 3457889987422 11111111111111 235788888876
No 394
>PRK06762 hypothetical protein; Provisional
Probab=94.49 E-value=0.027 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 395
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.45 E-value=0.14 Score=57.31 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC-------CCCcccC----HHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN-------RESEKLD----LDQ 258 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~----~~~ 258 (991)
.-..++|+|..|+|||||++.+..... ...+++++.-.+..++.++....+..... +..+... ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345799999999999999999986422 22344444433444555554444433211 1111100 111
Q ss_pred HHHHHHhHh--CCceeEEEeccc
Q 001955 259 LQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 259 l~~~l~~~L--~~kr~LlVlDdv 279 (991)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112233443 488999999999
No 396
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.28 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999995
No 397
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.42 E-value=0.057 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
++++|+|+.|.||||+++.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999988874
No 398
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.40 E-value=0.47 Score=49.53 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=64.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccc-cc--cccc--eEEEEec----CCCChHHHHH--------------HHHHHcc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDV-KT--HFNL--RMWVCVS----DIFDVTTIVE--------------KMIRSAT 247 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~--~F~~--~~wv~~s----~~~~~~~~~~--------------~i~~~l~ 247 (991)
-.+++|+|..|+|||||++.+...... .+ .++. +.++.-. ...++.+.+. ++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 358999999999999999999875221 11 1221 2222211 0112222221 2222222
Q ss_pred CCC-----Cc-ccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHh
Q 001955 248 NRE-----SE-KLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 248 ~~~-----~~-~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 316 (991)
... .. ...-+...-.|...|..+.=+++||+--.. +......+...+... ..|..||++|.+...+...
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 110 00 111112222345556677789999996432 333334444444332 2366789999887665543
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.39 E-value=0.3 Score=49.39 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHH-HHHHHhcCCC-C-CcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWL-ELEALLMNGV-S-GSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTTR~~~v~~~ 315 (991)
+...+..++-++++|+.-.. +..... .+...+.... . |..||++|.+.+....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 45566678889999997543 333444 4545443322 2 5678888888776543
No 400
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.39 E-value=0.06 Score=53.10 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.056 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 402
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.39 E-value=0.12 Score=60.52 Aligned_cols=132 Identities=13% Similarity=0.131 Sum_probs=71.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|....++++.+.+..-.. .-.-|.|+|..|+||+++|+.+..... + .-..-+.++++... ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH--
Confidence 3589999888888877753322 223478999999999999999876311 1 11122345554432 222222
Q ss_pred HHccCCCCccc-CH-HHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 244 RSATNRESEKL-DL-DQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 244 ~~l~~~~~~~~-~~-~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
.+.+...... .. +.....+.. ...-.|+||+++.-.......+...+..+. ...|||.||..
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 1211111000 00 000000110 223457899998877666677777775531 13478887764
No 403
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.51 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
|...|..++=+++||+-... +......+...+.....|..||++|.+......
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 44556677889999997543 334445555555443236678888888776644
No 404
>PTZ00035 Rad51 protein; Provisional
Probab=94.35 E-value=0.26 Score=53.79 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=39.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccc---c-ccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDV---K-THFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+||||++..++-.... . ..=..++|++....++++++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 5689999999999999999888643221 1 11235679998877777764 34455543
No 405
>PRK13949 shikimate kinase; Provisional
Probab=94.33 E-value=0.35 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 406
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.051 Score=49.59 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=39.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
.-|.|.|.||+||||+|.+++... ..-|+++|+-.....+....=+.. ....-|.+.+.+.|...+.+-
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 357899999999999999999521 123666665333332222211111 122345566666666665543
No 407
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.029 Score=55.67 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999974
No 408
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.54 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 409
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.32 E-value=0.92 Score=47.18 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
+.+.++|+.|+|||+-++.+++. .+....+..++.++...++..+........ ..........+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCc
Confidence 48899999999999999999984 223344556777777777777666554332 2334555666667778888
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCCCC
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGVSG 300 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (991)
-+++.|+...-.....+.++......+.|
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 89999999877777788887766554444
No 410
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.31 E-value=0.086 Score=57.94 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=36.0
Q ss_pred CceeecchhHHHHHHHHhCC--------CCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDS--------SESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++|.++.++.+.-.+... .-...-..+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45888888888877666531 0000112367889999999999999999973
No 411
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.38 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.-+-|..+|++|.|||-||++|+..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHh
Confidence 4467889999999999999999973
No 412
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.28 E-value=0.29 Score=54.65 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=34.6
Q ss_pred CceeecchhHHHHHHHHh-------C--CCCC---CCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 164 EDIIGRDGDKNEIIDRLL-------D--SSES---EIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~-------~--~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|.+..++.+...+. . .... .......|.++|++|+|||++|+.++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 457898888888866551 1 0000 001135789999999999999999986
No 413
>PRK04040 adenylate kinase; Provisional
Probab=94.26 E-value=0.034 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+|.|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 414
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.26 E-value=0.38 Score=48.23 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=59.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEE---------------ecCCC---ChHHHHHHHHHHccCCCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVC---------------VSDIF---DVTTIVEKMIRSATNRESE 252 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------~s~~~---~~~~~~~~i~~~l~~~~~~ 252 (991)
-.+++|.|..|.|||||.+.+..-.. .....+.+++. +.+.. ....+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 35899999999999999999987420 01111222111 11111 1112222221100000 1
Q ss_pred ccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHH
Q 001955 253 KLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSER 311 (991)
Q Consensus 253 ~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~ 311 (991)
...-+...-.+...+..++=++++|+.-.. +......+...+... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111122222344555567778999997432 344445555544432 24778888888764
No 415
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.25 E-value=0.69 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.24 E-value=0.058 Score=65.56 Aligned_cols=178 Identities=13% Similarity=0.144 Sum_probs=81.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC------Cc-ccCHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE------SE-KLDLDQLQER 262 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~-~~~~~~l~~~ 262 (991)
+.+++.|+|+.|.||||+.+.+.-..-. .....+|.+...... ..+.++...++... .. ......+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3478999999999999999888753100 001111111110000 00111111111000 00 0111222222
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHH-HHhcC-CCCCcEEEEecCcHHHHHHhCCCCceecCCCChHHHHHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELE-ALLMN-GVSGSKIVVTTRSERVARITSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~-~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
+.. + ..+-|+++|..-.. +..+...+. ..+.. ...|+.+|+||...++.........+.-..+..++- .+-..+
T Consensus 397 l~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~p~Y 473 (771)
T TIGR01069 397 LSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLSPTY 473 (771)
T ss_pred HHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCceEE
Confidence 222 2 47899999998543 333333332 12211 125789999999988755432222111111111000 000000
Q ss_pred HccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcC
Q 001955 340 AFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYN 380 (991)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~ 380 (991)
-+..+.+. ...|-+|++++ |+|-.+.--|..+...
T Consensus 474 kl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 474 KLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred EECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 11111111 24577888887 8888888888776543
No 417
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.12 Score=57.50 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=50.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHHccCCC-------CcccCHH-----
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNRE-------SEKLDLD----- 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 257 (991)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+.+.. +..++..+++..-+... .+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998632 22455556565543 44556666544321110 1111111
Q ss_pred HHHHHHHhHh--CCceeEEEeccc
Q 001955 258 QLQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 258 ~l~~~l~~~L--~~kr~LlVlDdv 279 (991)
...-.+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112234444 589999999999
No 418
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.21 E-value=0.62 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~ 214 (991)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 419
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.21 E-value=0.078 Score=56.66 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=50.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-+++-|+|+.|+||||||-.+... ....-..++|++....+++.. ++.++.+. ..+...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999888763 333345578999887776643 33443221 12233455555555
Q ss_pred hHhC-CceeEEEecccc
Q 001955 265 GEID-GKRYLLVLDDVW 280 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~ 280 (991)
+.++ +..-++|+|-|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 5554 345688889873
No 420
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.87 Score=45.40 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC-CCCCcEEEEecCcHHHHHHhCCCCce
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN-GVSGSKIVVTTRSERVARITSKLPFH 322 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTTR~~~v~~~~~~~~~~ 322 (991)
|.+.+-=++-+.|||..+.- +.+....+...+.. ..+|+-+|+.|..++++.....+.+|
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444456679999998653 33444444333322 23577788889999999887665544
No 421
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.37 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+++|+|+.|.|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 422
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.16 E-value=0.31 Score=49.58 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++=++++|+--.. |......+...+... ..|..||++|.+...+..
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 34445566779999997432 334444454444432 246788999988776544
No 423
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.16 E-value=0.48 Score=47.96 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHHhCC
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~~~~ 318 (991)
+...+...+-++++|+--.. +......+...+... ..|..||++|.+......+..
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 34445567778999996432 344444554444331 235678888888765555433
No 424
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.13 E-value=0.15 Score=56.33 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=47.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCC-----cccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRES-----EKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 264 (991)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++. .-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4569999999999999999988863 2222245778776432 33332 22334432111 1223444444443
Q ss_pred hHhCCceeEEEeccc
Q 001955 265 GEIDGKRYLLVLDDV 279 (991)
Q Consensus 265 ~~L~~kr~LlVlDdv 279 (991)
+ .+.-++|+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 35567888887
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.1 Score=56.19 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=52.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHHh
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLRG 265 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~~ 265 (991)
-.+|.|-|-||||||||.-++... ....- .++||+-.+...-.+ --++.++... ....+.+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 468999999999999999888874 33222 677776554332222 2234444211 123456666666665
Q ss_pred HhCCceeEEEeccccc
Q 001955 266 EIDGKRYLLVLDDVWN 281 (991)
Q Consensus 266 ~L~~kr~LlVlDdv~~ 281 (991)
.++-++|+|-+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 5788999999843
No 426
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.12 E-value=0.74 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|.|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999974
No 427
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.12 E-value=0.54 Score=50.87 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...+-.++=+++||.--.. |......+...+..-..+..||+||.+.+.+..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence 34555667789999996432 333334444444333335789999998775444
No 428
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.12 E-value=0.43 Score=48.39 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++=+++||+--.. |......+...+..- ..|..||++|.+...+..
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 34445567779999996432 334444454444332 246678888888765543
No 429
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.11 E-value=0.5 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999875
No 430
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.11 E-value=0.037 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999985
No 431
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.11 E-value=0.41 Score=48.85 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=58.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCc-------ccCHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESE-------KLDLDQLQER 262 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~l~~~ 262 (991)
..+++.|.|+.|.||||+.+.+.-.. +..+-.+.+|..-.. -..+.+|...++..+.. ..+..++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998887521 111111122221000 00111111111111100 0122233333
Q ss_pred HHhHhCCceeEEEecccccc----ChH--HHHHHHHHhcCCCCCcEEEEecCcHHHHHHh
Q 001955 263 LRGEIDGKRYLLVLDDVWNE----NRD--KWLELEALLMNGVSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~----~~~--~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 316 (991)
++. .+++-|+++|..-.. +.. .|. +...+... .++.+|++|...+++...
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~-il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYA-TLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHH-HHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 332 257899999996322 111 122 23333332 578999999998887654
No 432
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.09 E-value=0.57 Score=48.18 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.8
Q ss_pred HHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 262 RLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 262 ~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
.+...+..++-++++|+--.. +......+...+... ..|..||++|.+.+....
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 344555667789999996432 334444555544432 247788888888765443
No 433
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.09 E-value=0.1 Score=58.72 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=54.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCC-------CcccCH-----H
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRE-------SEKLDL-----D 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~-----~ 257 (991)
-+.++|.|.+|+|||||+.++.+... +.+-+.++++-+.+. ....++..++...-.... .+.... .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35789999999999999988887532 235577777776544 455666666654321110 111111 1
Q ss_pred HHHHHHHhHh---CCceeEEEeccc
Q 001955 258 QLQERLRGEI---DGKRYLLVLDDV 279 (991)
Q Consensus 258 ~l~~~l~~~L---~~kr~LlVlDdv 279 (991)
...-.+.+++ +++.+|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2223345555 378999999999
No 434
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.09 E-value=0.57 Score=48.10 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+...+..++=++++|+--.. +......+...+.....+..||++|.+.....
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 33444556779999986432 34444555555544333367888888877653
No 435
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.08 E-value=0.47 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|.|..|.|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999974
No 436
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.52 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.++..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 437
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.07 E-value=1 Score=45.60 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHhHhCCceeEEEecccccc-ChHHHHHHHH-HhcC-CCCCcEEEEecCcHHHHHH
Q 001955 261 ERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEA-LLMN-GVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 261 ~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~-~l~~-~~~gs~iivTTR~~~v~~~ 315 (991)
-.+...+..++=++++|+--.. +......+.. .+.. ...|..||++|.+......
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3455666778889999996432 3344444544 2322 2346788888888766554
No 438
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.07 E-value=0.44 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 439
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.6 Score=48.27 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
|...+..++=+++||+-... +......+...+.....|..||++|.+......
T Consensus 150 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 44555667789999997532 334444454444433346678888888766543
No 440
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.04 E-value=0.06 Score=49.50 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 171 GDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
++..++...|...-. .-.+|.+.|.-|.||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555543211 3458999999999999999999975
No 441
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.04 E-value=0.4 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 442
>PTZ00494 tuzin-like protein; Provisional
Probab=94.03 E-value=1.5 Score=48.02 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=98.7
Q ss_pred CcCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 161 VHKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..+..+|.|+++-..+.+.|..... .+++++.+.|.-|.||++|.+.....+.. ..++|++.... +-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHH
Confidence 3456789999888888887775543 37899999999999999999988864332 45678776544 4566
Q ss_pred HHHHHccCCCCccc--CHHHHHHHH---HhHhCCceeEEEeccccccC-hHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 241 KMIRSATNRESEKL--DLDQLQERL---RGEIDGKRYLLVLDDVWNEN-RDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 241 ~i~~~l~~~~~~~~--~~~~l~~~l---~~~L~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
.+.+.++....+.. -.+-+.+.. .....++.=+||+-=-...+ ...+.+.. .|.....-|.|++----+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 77777775543322 122222222 22234554555543211111 11222221 2333345667777554443322
Q ss_pred Hh---CCCCceecCCCChHHHHHHHHHH
Q 001955 315 IT---SKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 315 ~~---~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
.. .....|.+++++-++|.++-.+.
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhcc
Confidence 21 12247889999999998887654
No 443
>PRK00625 shikimate kinase; Provisional
Probab=94.03 E-value=0.034 Score=54.22 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 444
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.42 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 445
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.54 Score=53.92 Aligned_cols=160 Identities=13% Similarity=0.058 Sum_probs=79.4
Q ss_pred eeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 238 (991)
+=|.|+-+.++.+.+.-+... .-...+-|..+|+||.|||++|+++++. -.-.| +.+... ++
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----EL 504 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----EL 504 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----HH
Confidence 445666666666555432211 0135678899999999999999999983 33333 333211 11
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hHHHHHHHHHhcCCC--CCcEEEE
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEALLMNGV--SGSKIVV 305 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~iiv 305 (991)
+ ...-+ .....+.+.+.+.=+-.+.+|.||.++... .....++..-+.... ++--||-
T Consensus 505 ~----sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 505 F----SKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred H----HHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 1 11111 111222222332223356888888875321 011122222222222 2323344
Q ss_pred ecCcHHHHHH--hC---CCCceecCCCChHHHHHHHHHHHccCCC
Q 001955 306 TTRSERVARI--TS---KLPFHALRGLPEDMSWSLFTRMAFEQGS 345 (991)
Q Consensus 306 TTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 345 (991)
.|..++.... +. .+..+-++.-+.+--.++|+.++-...-
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF 620 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC
Confidence 4444433221 22 3345556666667778899888765443
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.039 Score=52.06 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.5
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 001955 193 VIPIVGIGGLGKTAVAQLVY 212 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~ 212 (991)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 447
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.048 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987776
No 448
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.032 Score=51.86 Aligned_cols=43 Identities=35% Similarity=0.455 Sum_probs=31.9
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN 248 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 248 (991)
+|.|.|++|+||||+|+.++++.... ..+.-.+++++++..+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCC
Confidence 68999999999999999999842221 11334678888887763
No 449
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.68 Score=46.77 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999999864
No 450
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.0064 Score=58.59 Aligned_cols=67 Identities=24% Similarity=0.448 Sum_probs=51.7
Q ss_pred CCCCCccCeeeeccCCCCCCCCCccCC-CCCCccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCCCC
Q 001955 870 EPPFSKLKSLTIESIDDLETWPEEMMP-NFPSIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCPNM 936 (991)
Q Consensus 870 ~~~l~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l 936 (991)
+..++.++.|.+.+|..+.++..+.++ -.++|+.|+|++|+.+++-- ..+..+++|+.|.|++.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 346788888999999888776654443 47899999999999888642 45678889999999887743
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.94 E-value=0.11 Score=57.37 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=58.6
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
.+.|.|.|+.|+||||+++.+.+. +......+++. +.++.... .......+.... ...+.....+.++..|+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNKRSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCccceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 368999999999999999988863 33333444443 22221110 000000000000 0111223455667778888
Q ss_pred eeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 271 RYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
+=.|++|.+.+. +.+..... ....|-.|+.|+-...
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCC
Confidence 999999999654 44433222 2234555666655433
No 452
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.94 E-value=0.28 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~ 214 (991)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999873
No 453
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.93 E-value=0.17 Score=53.37 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD 231 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 231 (991)
.-.++.|.|.+|+|||++|.+++... .+ .=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 55789999999999999998876531 11 223577888754
No 454
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.93 E-value=0.65 Score=47.93 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=68.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc----------------cc-cceEEEEecC---------------------
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT----------------HF-NLRMWVCVSD--------------------- 231 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------~F-~~~~wv~~s~--------------------- 231 (991)
.-.+++|.|+.|+|||||.+.++.-..... .+ ....||.-+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 346899999999999999999987321100 00 0122222110
Q ss_pred CC---C--hHHHHHHHHHHccCCC------CcccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcC--C
Q 001955 232 IF---D--VTTIVEKMIRSATNRE------SEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMN--G 297 (991)
Q Consensus 232 ~~---~--~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~ 297 (991)
.+ + -.++..+.++.++... .+...-+.-...+...|..+.=+++||.=-.. |...-.++...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 00 1 1223444455544221 12222333444566777888888899984221 11111223333322 1
Q ss_pred CCCcEEEEecCcHHHHHHhCC
Q 001955 298 VSGSKIVVTTRSERVARITSK 318 (991)
Q Consensus 298 ~~gs~iivTTR~~~v~~~~~~ 318 (991)
..|..||+++-+.+.|..+..
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCC
Confidence 357789999999887766544
No 455
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.22 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 456
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.88 E-value=0.33 Score=47.52 Aligned_cols=119 Identities=14% Similarity=-0.011 Sum_probs=62.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC---CCChHHHHHHHH--HH--ccCC-----CCcc---c
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD---IFDVTTIVEKMI--RS--ATNR-----ESEK---L 254 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~~--l~~~-----~~~~---~ 254 (991)
....|-|+|..|-||||.|..+.-. .....+ .+..+.+-+ ......+++.+- .- .+.. .... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR-AVGHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH-HHHCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999666541 111122 222333222 223333333310 00 0100 0000 1
Q ss_pred CHHHHHHHHHhHhCC-ceeEEEecccccc---ChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 255 DLDQLQERLRGEIDG-KRYLLVLDDVWNE---NRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 255 ~~~~l~~~l~~~L~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
...+..+..++.+.. +-=|+|||.+-.. ..-..+++...+....++.-||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112233344455544 4459999998432 1233456777777766788999999975
No 457
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.85 E-value=0.19 Score=51.86 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred ceeecchhHHHHHHHHh----CCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLL----DSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~----~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
.++|..-.++.|+..+. ... ..++-+++.+|.+|+||..+++.++++..-.+.= .....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~ 145 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVH 145 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHH
Confidence 35665555555554443 332 3478899999999999999999988752211100 01111
Q ss_pred HHHHHccCCCCcccCH----HHHHHHHHhHhC-CceeEEEeccccccChHHHHHHHHHhc
Q 001955 241 KMIRSATNRESEKLDL----DQLQERLRGEID-GKRYLLVLDDVWNENRDKWLELEALLM 295 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~----~~l~~~l~~~L~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 295 (991)
....... -+....+ +++...++..++ -+|-|+|||+|+.....-.+.+...+.
T Consensus 146 ~fvat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 146 HFVATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred Hhhhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111111 1111122 233344443333 479999999998765444455555443
No 458
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.82 E-value=0.0029 Score=74.15 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=15.7
Q ss_pred CCCcceEEEeeeCCCc---cCcccccccccCceeecc
Q 001955 748 HQNLKELTIIRFGGIR---LSSWLSSVTNLTMIDISI 781 (991)
Q Consensus 748 ~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~ 781 (991)
.++|+.|.+.++.... +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 3455555555443221 112223555666666655
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.80 E-value=0.21 Score=59.62 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC--hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD--VTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
.+|+.++|+.|+||||++.+++........-..+..++.. .+. ..+.++...+.++.......+.+++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999998888632211111234444432 233 3344555555555333333355555555543 34
Q ss_pred CceeEEEecccc
Q 001955 269 GKRYLLVLDDVW 280 (991)
Q Consensus 269 ~kr~LlVlDdv~ 280 (991)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 443 56666654
No 460
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.79 E-value=0.17 Score=56.77 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=52.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCC-------CcccCHH-----
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRE-------SEKLDLD----- 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 257 (991)
-+-++|.|.+|+|||||+..+...... .+=+.++++-+.+. ..+.++++++...-.... .+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999887653221 11135667766544 456667777665321110 1111111
Q ss_pred HHHHHHHhHh---CCceeEEEeccc
Q 001955 258 QLQERLRGEI---DGKRYLLVLDDV 279 (991)
Q Consensus 258 ~l~~~l~~~L---~~kr~LlVlDdv 279 (991)
...-.+.+++ +++.+|+++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1222345555 579999999999
No 461
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.77 E-value=0.31 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 001955 193 VIPIVGIGGLGKTAVAQLVY 212 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~ 212 (991)
+++|+|+.|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999876
No 462
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.76 E-value=0.47 Score=48.86 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
+...+-..+-++++|+--.. +......+...+... ..|..||++|.+...+..
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 34445566788999996432 344444555544332 246679999998776544
No 463
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.89 Score=47.17 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
|...+..++=+++||+.-.. +......+...+..-..|..||++|.+......
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 34445566678999997432 444445555555443346678888888766544
No 464
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.97 Score=47.30 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999853
No 465
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.70 E-value=0.22 Score=60.30 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=72.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i 242 (991)
+.++|....+.++.+....... ...-|.|+|..|+||+++|+.+.+... -... -+.|++.... ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~p---fv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERAAGP---YIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCC---eEEEECCCCC-hHHHHHHh
Confidence 3588999888888877765432 223478999999999999999997421 1122 2334443332 12222233
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC---C--------CcEEEEecCc
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV---S--------GSKIVVTTRS 309 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTTR~ 309 (991)
+......... . ....+. ....=.|+||++.+........+...+..+. . ..|||.||..
T Consensus 397 fg~~~~~~~~--~---~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN--G---RLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC--C---CCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2221100000 0 000000 1234468999998877667777777765432 1 3467777654
No 466
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.044 Score=53.70 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+|+|-||-|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 467
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.85 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 468
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.67 E-value=0.58 Score=48.71 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+...+..++=++++|+.... +......+...+.....|..||++|.+.+...
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 34445556678999997543 44444555555543335677888888877665
No 469
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.44 Score=50.90 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVAR 314 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~ 314 (991)
|...+..++-++++|+.... +......+...+..- ..|..||++|.+.+...
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 44556677789999997543 334444455544432 23778889988876664
No 470
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.66 E-value=0.067 Score=53.16 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998884
No 471
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.65 E-value=0.091 Score=59.57 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=46.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceE-EEEecCCC-ChHHHHHHHHHHccCCCCccc-----CHHHHHHHH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRM-WVCVSDIF-DVTTIVEKMIRSATNRESEKL-----DLDQLQERL 263 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~-----~~~~l~~~l 263 (991)
-....|+|.+|+|||||++.+++... ..+-++.+ .+-|.+.. .+.++.+.+-.++-....+.. ....+.-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999998321 12223333 33444433 333333332111111111111 111222223
Q ss_pred HhHh--CCceeEEEeccc
Q 001955 264 RGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 264 ~~~L--~~kr~LlVlDdv 279 (991)
.+++ .++.+||++|++
T Consensus 495 Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 3444 588999999999
No 472
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.64 E-value=0.79 Score=47.66 Aligned_cols=53 Identities=6% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~ 315 (991)
+...+..++=+++||+-... +......+...+..-..|..||++|.+.+....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 33444556779999997543 444445555555443346789999988876643
No 473
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.64 E-value=0.2 Score=55.94 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=49.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-------CcccCHHH----
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-------SEKLDLDQ---- 258 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 258 (991)
.-..++|.|..|+|||||++.+..... ....++...-.+.....++.++.+..-+... .+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 335799999999999999999987422 1222333333344455566665544322110 11111111
Q ss_pred -HHHHHHhHh--CCceeEEEeccc
Q 001955 259 -LQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 259 -l~~~l~~~L--~~kr~LlVlDdv 279 (991)
..-.+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122244444 478999999998
No 474
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.63 E-value=0.44 Score=48.67 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999886
No 475
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.63 E-value=0.52 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 48999999999999999999864
No 476
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.62 E-value=0.29 Score=49.11 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=26.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccc--------cceEEEEecCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHF--------NLRMWVCVSDI 232 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 232 (991)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 378999999999999998777643322222 25677776655
No 477
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.62 E-value=0.23 Score=58.65 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=59.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccc-cccccceEEEEecCCCChHHHHHHHHHHccCCCCcc---cCHHHHHHHHHhH
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDV-KTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEK---LDLDQLQERLRGE 266 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~~~ 266 (991)
.++..|.|.+|.||||+++.+...... ...=...+.+.........++.+.+...+..-.... .....-...|++.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 358899999999999999888753111 111124566665555555555555443322110000 0000011222222
Q ss_pred hC------------Cce---eEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecC
Q 001955 267 ID------------GKR---YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTR 308 (991)
Q Consensus 267 L~------------~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR 308 (991)
|. +.+ -++|+|.+.-.+......+...++ +++|+|+.-=
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 21 111 289999997765555555555444 5778876543
No 478
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=93.62 E-value=0.21 Score=45.95 Aligned_cols=91 Identities=20% Similarity=0.412 Sum_probs=51.3
Q ss_pred hhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHH--HHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH-Hcc
Q 001955 171 GDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKT--AVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR-SAT 247 (991)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKT--tLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~-~l~ 247 (991)
+++.-+++++..--. .++.++|+|-|||-+||| .+|..||.+. -|.-+|.. ++++.++ ++.
T Consensus 36 eeLGlLVDFmaEl~K--~~Gh~lIGiRGmPRVGKTEsivAasVcAnK---------rW~f~SST-----likQTvRs~L~ 99 (192)
T PF11868_consen 36 EELGLLVDFMAELFK--EEGHKLIGIRGMPRVGKTESIVAASVCANK---------RWLFLSST-----LIKQTVRSQLI 99 (192)
T ss_pred hHhccHHHHHHHHHH--hcCceEEeecCCCccCchhHHHHHhhhcCc---------eEEEeeHH-----HHHHHHHHHhh
Confidence 344445555432111 247799999999999999 4567777642 36666652 3333222 221
Q ss_pred CCCCcccCHHHHHHHHHhHhCCceeEEEecccccc---ChHHHHHHHHHh
Q 001955 248 NRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE---NRDKWLELEALL 294 (991)
Q Consensus 248 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---~~~~~~~l~~~l 294 (991)
..+ .+...+.++|.+-.. +...|.-+...+
T Consensus 100 ~dE-----------------~~~~~ifIIDGivSt~r~~e~H~~Lvreim 132 (192)
T PF11868_consen 100 EDE-----------------YNENNIFIIDGIVSTRRSNERHWQLVREIM 132 (192)
T ss_pred hcc-----------------cCcCcEEEEeeeeeeccCCHHHHHHHHHHH
Confidence 111 134578888997432 345566565544
No 479
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.61 E-value=1.1 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|..|.|||||++.+...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 480
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.0044 Score=59.66 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=49.9
Q ss_pred CCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCC
Q 001955 818 STTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPN 897 (991)
Q Consensus 818 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 897 (991)
.+..+++++.|.+.+|..+..|...... +..++|+.|+|++|+.+++-....+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------------------------~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-------------------------GLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-------------------------ccccchheeeccCCCeechhHHHHHHH
Confidence 3345677777888888777776543221 246788888888888888776666777
Q ss_pred CCCccEEEEecCCCCC
Q 001955 898 FPSIQNISIELCPKLI 913 (991)
Q Consensus 898 l~~L~~L~l~~c~~l~ 913 (991)
+++|+.|.|.+-+...
T Consensus 175 lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 175 LKNLRRLHLYDLPYVA 190 (221)
T ss_pred hhhhHHHHhcCchhhh
Confidence 8888888888765443
No 481
>PRK05922 type III secretion system ATPase; Validated
Probab=93.61 E-value=0.3 Score=54.55 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=48.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC-CCChHHHHHHHHHHccCCC-------CcccCHH-----
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD-IFDVTTIVEKMIRSATNRE-------SEKLDLD----- 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 257 (991)
-..++|+|..|+|||||++.+.+.. ..+..+++.+.. ..+...++.+......... .+.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999742 223334443433 3334455555543332111 1111111
Q ss_pred HHHHHHHhHh--CCceeEEEeccc
Q 001955 258 QLQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 258 ~l~~~l~~~L--~~kr~LlVlDdv 279 (991)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222234444 488999999999
No 482
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.59 E-value=0.68 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 483
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.18 Score=56.29 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCC-------CcccCHH----
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRE-------SEKLDLD---- 257 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 257 (991)
.-..++|+|..|+|||||++.+++... .+.++++-+.+. ....++..+.+..-+... .+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999997432 234555555443 344555555544322110 1111111
Q ss_pred -HHHHHHHhHh--CCceeEEEeccc
Q 001955 258 -QLQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 258 -~l~~~l~~~L--~~kr~LlVlDdv 279 (991)
...-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122234444 488999999999
No 484
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.58 E-value=0.21 Score=57.99 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCc-cccccccceEEEEecCCCChHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDE-DVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
+++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.. +....| +-|++.... ...+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pf---v~inC~~l~--e~lles-- 281 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGRRDFPF---VAINCGAIA--ESLLEA-- 281 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCE---EEeccccCC--hhHHHH--
Confidence 489999989888888764332 23468999999999999999999742 122222 233333322 222222
Q ss_pred HHccCCCCcccCHH---HHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 244 RSATNRESEKLDLD---QLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 244 ~~l~~~~~~~~~~~---~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
.+.+.......-. .....+. ....=-|+||++.+-.......+...+.... ...|||.||..
T Consensus 282 -eLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 282 -ELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred -HhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 2222111100000 0000011 0233458999998876666667777765432 12378887754
No 485
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.58 E-value=0.16 Score=56.95 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=54.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHHccCC-------CCcccCHH-----
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNR-------ESEKLDLD----- 257 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 257 (991)
-+-++|.|.+|+|||+|+..+.++.. +.+-+.++|+-+.+.. ...++.+++...-... ..+.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35689999999999999998877532 2334677888776544 4556666665431111 01111111
Q ss_pred HHHHHHHhHhC---CceeEEEeccc
Q 001955 258 QLQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 258 ~l~~~l~~~L~---~kr~LlVlDdv 279 (991)
...-.+.++++ ++.+|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 12233455554 68999999999
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.57 E-value=0.19 Score=57.03 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=45.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC-CCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD-IFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~ 269 (991)
.+|++++|+.|+||||++.+++.....+..-..+..|+... .....+-++.+.+..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999988886322222112344554422 11233334444454443222122222222222 23344
Q ss_pred ceeEEEecccc
Q 001955 270 KRYLLVLDDVW 280 (991)
Q Consensus 270 kr~LlVlDdv~ 280 (991)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 466677764
No 487
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.74 Score=49.03 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC-CCCcEEEEecCcHHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG-VSGSKIVVTTRSERVARI 315 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTTR~~~v~~~ 315 (991)
|...|..++=++++|+.... +......+...+..- ..|..||++|.+.+.+..
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44556677789999997543 334444454444332 236788888888765543
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.54 E-value=0.46 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 489
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.53 E-value=0.28 Score=51.05 Aligned_cols=88 Identities=15% Similarity=0.238 Sum_probs=53.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccc--cccccceEEEEecCCC-ChHHHHHHHHHHccCCC-------CcccCHH----
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDV--KTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNRE-------SEKLDLD---- 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 257 (991)
+-++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+.. +..++..++.+.-.... .+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999988875321 2234677888876654 55666666655321110 0111111
Q ss_pred -HHHHHHHhHhC---CceeEEEeccc
Q 001955 258 -QLQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 258 -~l~~~l~~~L~---~kr~LlVlDdv 279 (991)
...-.+.++++ ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11223445543 68999999999
No 490
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.50 E-value=0.043 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 491
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.48 E-value=0.13 Score=56.55 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=36.9
Q ss_pred CceeecchhHHHHHHHHhCC--------CCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDS--------SESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++|.+..++.+..++... ........+.|.++|++|+|||++|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889998888888777431 0000012367899999999999999999873
No 492
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.46 E-value=0.12 Score=46.53 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=32.2
Q ss_pred ceeecchhHH----HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKN----EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~----~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+++|..-..+ .|.+.+.... ..++-|++.+|++|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3555544444 4444444432 347899999999999999988777764
No 493
>PRK08149 ATP synthase SpaL; Validated
Probab=93.43 E-value=0.28 Score=54.75 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=50.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEec-CCCChHHHHHHHHHHccCC-------CCcccCH-----
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVS-DIFDVTTIVEKMIRSATNR-------ESEKLDL----- 256 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~----- 256 (991)
.-..++|+|..|+|||||++.+++... -+.+++..+. +..+..++..+........ ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345789999999999999999997422 2333344443 3345556666665532211 0111111
Q ss_pred HHHHHHHHhHh--CCceeEEEeccc
Q 001955 257 DQLQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 257 ~~l~~~l~~~L--~~kr~LlVlDdv 279 (991)
......+.+++ ++|++|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 11222233443 489999999999
No 494
>PF13479 AAA_24: AAA domain
Probab=93.41 E-value=0.24 Score=50.50 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=17.7
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 001955 192 AVIPIVGIGGLGKTAVAQLV 211 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v 211 (991)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999766
No 495
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.40 E-value=0.21 Score=57.91 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=37.3
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+++|....++++.+.+..-.. .-.-|.|.|..|+||+++|+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 489999999988888764332 2346899999999999999999974
No 496
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.36 E-value=0.33 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhCC
Q 001955 194 IPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 194 i~I~G~~GiGKTtLa~~v~~~ 214 (991)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 497
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.35 E-value=0.047 Score=55.12 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|+|.|.+|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 498
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=1.2 Score=42.91 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=30.4
Q ss_pred HHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhc-CCCCCcEEEEecCcH
Q 001955 261 ERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLM-NGVSGSKIVVTTRSE 310 (991)
Q Consensus 261 ~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTTR~~ 310 (991)
-.+.+..-.++-|-+||..... |...-..+...+. ....|.-||.||-.+
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 3445555678889999998654 2233333333332 245777899998754
No 499
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.35 E-value=0.061 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++.|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998864
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.34 E-value=1.3 Score=41.85 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHccCCC------CcccCHHHHHHHHHhHhCCceeEEEeccccc-cChHHHHHHHHHhc--CCCCCcEEE
Q 001955 234 DVTTIVEKMIRSATNRE------SEKLDLDQLQERLRGEIDGKRYLLVLDDVWN-ENRDKWLELEALLM--NGVSGSKIV 304 (991)
Q Consensus 234 ~~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~--~~~~gs~ii 304 (991)
+.....+..+++++... .....-++-.-.|.+.+...+-+++=|.--. -+...-+.+...+- +...|...+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 44556677777776432 1223445555667788888888888886421 12222233333322 234788999
Q ss_pred EecCcHHHHHHhCC
Q 001955 305 VTTRSERVARITSK 318 (991)
Q Consensus 305 vTTR~~~v~~~~~~ 318 (991)
+.|.++.++..|..
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 99999999887754
Done!