Query 001955
Match_columns 991
No_of_seqs 593 out of 4414
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-47 3.8E-52 451.0 22.8 317 167-509 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.6E-39 3.3E-43 375.2 19.1 285 166-501 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-37 9.4E-42 404.3 25.2 311 162-507 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.8E-34 1.7E-38 341.2 27.2 306 163-505 123-450 (591)
5 3rgz_A Protein brassinosteroid 100.0 8.8E-30 3E-34 313.1 13.5 415 545-978 294-766 (768)
6 4ecn_A Leucine-rich repeat pro 100.0 2E-28 7E-33 297.8 21.3 340 567-955 440-839 (876)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.9E-27 3E-31 280.0 31.1 275 518-805 30-338 (606)
8 4eco_A Uncharacterized protein 100.0 7.2E-28 2.5E-32 289.0 19.6 386 520-956 81-600 (636)
9 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-26 9.9E-31 275.5 27.6 413 520-955 56-557 (606)
10 3rgz_A Protein brassinosteroid 99.9 4.2E-27 1.4E-31 289.2 20.6 205 746-955 463-716 (768)
11 2z63_A TOLL-like receptor 4, v 99.9 1.7E-25 5.7E-30 267.0 28.8 157 518-682 26-189 (570)
12 4ecn_A Leucine-rich repeat pro 99.9 3.7E-26 1.3E-30 278.0 22.2 352 537-935 440-839 (876)
13 4eco_A Uncharacterized protein 99.9 2.3E-26 8E-31 275.9 19.6 371 537-957 198-633 (636)
14 3j0a_A TOLL-like receptor 5; m 99.9 5.1E-25 1.7E-29 273.6 31.3 417 518-954 22-558 (844)
15 3t6q_A CD180 antigen; protein- 99.9 2.3E-25 7.7E-30 267.8 27.1 407 521-955 82-559 (606)
16 3t6q_A CD180 antigen; protein- 99.9 2.7E-25 9.2E-30 267.1 26.6 441 518-986 31-514 (606)
17 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-24 3.9E-29 265.3 31.8 416 518-953 23-514 (680)
18 2z7x_B TOLL-like receptor 1, v 99.9 5.5E-25 1.9E-29 259.1 26.8 402 520-954 21-479 (520)
19 2z81_A CD282 antigen, TOLL-lik 99.9 8.2E-26 2.8E-30 268.2 17.8 407 519-954 25-508 (549)
20 2z63_A TOLL-like receptor 4, v 99.9 1.8E-24 6.2E-29 258.0 25.6 390 520-954 52-529 (570)
21 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-23 8.5E-28 253.5 32.4 149 520-675 49-200 (680)
22 2z81_A CD282 antigen, TOLL-lik 99.9 4.8E-24 1.6E-28 253.0 22.0 409 545-984 26-509 (549)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-23 6.3E-28 248.1 26.9 377 545-954 52-508 (562)
24 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-23 8.2E-28 258.6 27.9 278 543-833 22-348 (844)
25 1o6v_A Internalin A; bacterial 99.9 2E-23 6.7E-28 241.6 24.4 324 540-934 63-386 (466)
26 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.5E-28 242.9 22.2 351 545-938 30-410 (455)
27 3v47_A TOLL-like receptor 5B a 99.9 1.6E-23 5.5E-28 242.2 22.8 345 575-954 30-406 (455)
28 4fmz_A Internalin; leucine ric 99.9 1.2E-23 4.2E-28 233.7 20.3 306 540-934 39-344 (347)
29 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-23 8.8E-28 244.8 22.9 402 537-985 15-481 (520)
30 3o6n_A APL1; leucine-rich repe 99.9 8.5E-24 2.9E-28 238.9 17.4 307 542-934 42-350 (390)
31 1o6v_A Internalin A; bacterial 99.9 8.1E-23 2.8E-27 236.4 24.8 341 543-954 44-386 (466)
32 3oja_B Anopheles plasmodium-re 99.9 1E-23 3.5E-28 251.5 17.6 307 542-934 48-356 (597)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-22 7.4E-27 238.9 26.3 359 518-935 50-509 (562)
34 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-22 1.4E-26 228.3 24.2 126 538-682 35-160 (457)
35 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-22 2.5E-26 238.9 24.3 419 518-954 50-578 (635)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6.3E-26 222.9 23.3 302 520-914 42-353 (457)
37 2id5_A Lingo-1, leucine rich r 99.9 1E-21 3.5E-26 228.3 21.5 246 545-833 32-282 (477)
38 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.7E-26 218.0 20.3 301 520-910 44-344 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 1.2E-21 4.1E-26 227.7 21.5 295 575-934 32-331 (477)
40 4fcg_A Uncharacterized protein 99.9 1.8E-21 6.3E-26 213.1 18.1 234 573-934 79-312 (328)
41 3o6n_A APL1; leucine-rich repe 99.9 3.7E-21 1.3E-25 217.2 20.4 303 520-910 45-350 (390)
42 3oja_B Anopheles plasmodium-re 99.9 3.7E-21 1.3E-25 229.4 20.0 303 521-911 52-357 (597)
43 1jl5_A Outer protein YOPM; leu 99.8 1.5E-20 5.2E-25 215.1 19.8 341 522-935 13-369 (454)
44 4g8a_A TOLL-like receptor 4; l 99.8 9E-20 3.1E-24 220.5 27.3 416 545-984 52-579 (635)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-21 5.5E-26 212.3 10.7 252 575-940 50-308 (313)
46 2ft3_A Biglycan; proteoglycan, 99.8 5.6E-20 1.9E-24 202.5 22.2 288 576-934 34-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4E-24 199.8 22.7 288 576-933 32-329 (330)
48 1jl5_A Outer protein YOPM; leu 99.8 2.3E-19 7.9E-24 205.3 22.2 297 575-953 111-426 (454)
49 4fcg_A Uncharacterized protein 99.8 1.5E-19 5E-24 198.1 16.3 125 544-677 80-213 (328)
50 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-20 1.9E-24 200.2 12.3 153 520-680 50-207 (313)
51 3g06_A SSPH2 (leucine-rich rep 99.8 4E-18 1.4E-22 200.8 22.0 260 575-939 40-300 (622)
52 1xku_A Decorin; proteoglycan, 99.8 8E-18 2.7E-22 185.1 21.2 273 575-909 52-329 (330)
53 2z66_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 183.6 18.5 80 575-656 28-111 (306)
54 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-17 3.8E-22 184.0 19.6 273 575-910 54-331 (332)
55 3zyi_A Leucine-rich repeat-con 99.8 1.9E-17 6.5E-22 190.5 20.3 243 577-910 56-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 189.7 20.1 243 577-910 45-290 (440)
57 1z7x_W Ribonuclease inhibitor; 99.7 3.4E-21 1.1E-25 223.1 -12.3 377 521-953 4-437 (461)
58 3ogk_B Coronatine-insensitive 99.7 3.4E-19 1.2E-23 213.4 3.5 372 521-934 113-524 (592)
59 2z66_A Variable lymphocyte rec 99.7 2.6E-17 8.7E-22 179.0 15.9 242 578-934 10-259 (306)
60 2z80_A TOLL-like receptor 2, v 99.7 9.5E-18 3.2E-22 186.3 11.9 250 575-934 52-312 (353)
61 3g06_A SSPH2 (leucine-rich rep 99.7 3.5E-17 1.2E-21 192.8 16.1 125 748-919 180-304 (622)
62 3zyj_A Leucine-rich repeat-con 99.7 1.2E-16 4E-21 183.2 19.4 102 575-678 64-168 (440)
63 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-16 5.8E-21 170.4 19.0 97 578-677 14-112 (285)
64 3ogk_B Coronatine-insensitive 99.7 4.6E-19 1.6E-23 212.2 -2.8 375 542-958 109-527 (592)
65 3zyi_A Leucine-rich repeat-con 99.7 1.8E-16 6.1E-21 182.3 18.0 221 545-834 75-301 (452)
66 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-17 9.5E-22 176.6 9.9 105 574-678 31-137 (285)
67 1z7x_W Ribonuclease inhibitor; 99.7 4E-19 1.4E-23 205.7 -5.4 356 520-934 28-438 (461)
68 3qfl_A MLA10; coiled-coil, (CC 99.7 4E-18 1.4E-22 151.7 2.2 82 9-90 2-84 (115)
69 3o53_A Protein LRIM1, AGAP0063 99.7 5.1E-17 1.7E-21 177.2 10.1 150 749-934 120-273 (317)
70 3oja_A Leucine-rich immune mol 99.7 1.1E-16 3.9E-21 184.9 11.7 234 573-931 32-270 (487)
71 1p9a_G Platelet glycoprotein I 99.7 2.4E-15 8.3E-20 161.2 20.4 101 571-676 6-106 (290)
72 1wwl_A Monocyte differentiatio 99.7 1.8E-17 6.3E-22 180.3 3.6 150 749-934 149-307 (312)
73 2z80_A TOLL-like receptor 2, v 99.7 5.5E-16 1.9E-20 172.1 15.3 246 545-804 52-310 (353)
74 1w5s_A Origin recognition comp 99.7 2.1E-15 7.2E-20 171.4 20.3 303 163-480 21-372 (412)
75 2p1m_B Transport inhibitor res 99.6 4.3E-18 1.5E-22 203.9 -4.2 373 521-935 106-518 (594)
76 2qen_A Walker-type ATPase; unk 99.6 1.5E-14 5.1E-19 160.5 24.4 291 162-501 10-349 (350)
77 2p1m_B Transport inhibitor res 99.6 5.6E-19 1.9E-23 211.6 -12.5 373 541-955 101-518 (594)
78 3oja_A Leucine-rich immune mol 99.6 1.5E-16 5.3E-21 183.8 7.9 128 537-679 22-153 (487)
79 3o53_A Protein LRIM1, AGAP0063 99.6 1.7E-16 5.8E-21 173.1 4.8 246 542-839 31-278 (317)
80 2fna_A Conserved hypothetical 99.6 6.9E-14 2.4E-18 155.5 24.0 291 162-500 11-356 (357)
81 1wwl_A Monocyte differentiatio 99.6 8.8E-16 3E-20 167.0 7.2 107 573-680 93-211 (312)
82 2o6q_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 150.0 19.4 98 575-677 16-116 (270)
83 1h6u_A Internalin H; cell adhe 99.6 6.1E-15 2.1E-19 159.8 12.8 100 573-679 39-138 (308)
84 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.9E-19 150.9 14.6 59 874-935 179-238 (239)
85 2o6q_A Variable lymphocyte rec 99.6 6.7E-14 2.3E-18 148.6 19.3 74 599-677 17-92 (270)
86 2z62_A TOLL-like receptor 4, v 99.6 2.6E-14 8.9E-19 152.5 15.8 107 571-677 48-156 (276)
87 3rfs_A Internalin B, repeat mo 99.6 1.6E-14 5.4E-19 153.6 13.8 101 572-677 38-140 (272)
88 2ast_B S-phase kinase-associat 99.6 3.8E-16 1.3E-20 172.3 1.1 103 575-677 70-175 (336)
89 1p9a_G Platelet glycoprotein I 99.6 7.3E-14 2.5E-18 149.7 18.5 201 594-935 6-207 (290)
90 2z62_A TOLL-like receptor 4, v 99.5 3.7E-14 1.3E-18 151.3 15.3 106 575-682 28-136 (276)
91 1h6u_A Internalin H; cell adhe 99.5 3.9E-14 1.3E-18 153.4 14.0 125 541-680 37-161 (308)
92 4ay9_X Follicle-stimulating ho 99.5 1.2E-13 4E-18 152.8 18.1 100 578-680 12-114 (350)
93 2xwt_C Thyrotropin receptor; s 99.5 4.2E-14 1.4E-18 147.3 12.1 196 576-835 32-238 (239)
94 3rfs_A Internalin B, repeat mo 99.5 8.9E-14 3E-18 147.8 13.9 129 541-680 37-167 (272)
95 4glp_A Monocyte differentiatio 99.5 2E-14 7E-19 156.1 8.9 82 575-656 91-179 (310)
96 4glp_A Monocyte differentiatio 99.5 2.9E-13 9.8E-18 147.0 14.5 226 576-834 65-305 (310)
97 4ay9_X Follicle-stimulating ho 99.5 1.1E-12 3.8E-17 144.9 19.3 244 593-931 5-254 (350)
98 2ca6_A RAN GTPase-activating p 99.5 7.2E-15 2.5E-19 165.2 0.9 140 538-679 25-196 (386)
99 2ca6_A RAN GTPase-activating p 99.4 2.4E-15 8.2E-20 169.2 -4.0 90 568-657 25-133 (386)
100 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 136.9 17.0 102 575-679 14-116 (251)
101 2ast_B S-phase kinase-associat 99.4 3E-14 1E-18 157.0 3.9 209 539-782 62-282 (336)
102 1fnn_A CDC6P, cell division co 99.4 1.4E-11 4.7E-16 138.6 25.8 322 163-504 16-384 (389)
103 3goz_A Leucine-rich repeat-con 99.4 5.3E-14 1.8E-18 156.4 5.3 91 567-657 14-120 (362)
104 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.2E-16 137.3 25.2 295 163-480 19-340 (384)
105 1h6t_A Internalin B; cell adhe 99.4 4.5E-13 1.5E-17 143.6 10.4 100 573-679 44-143 (291)
106 2v1u_A Cell division control p 99.4 3.3E-11 1.1E-15 135.4 26.3 295 163-480 18-352 (387)
107 1m9s_A Internalin B; cell inva 99.4 8E-13 2.7E-17 155.6 11.9 102 572-680 40-141 (605)
108 3cvr_A Invasion plasmid antige 99.4 2.6E-12 8.8E-17 149.4 15.7 89 575-677 59-147 (571)
109 4ezg_A Putative uncharacterize 99.3 1.2E-12 4.2E-17 131.5 8.8 103 572-677 41-143 (197)
110 4ezg_A Putative uncharacterize 99.3 5.9E-12 2E-16 126.4 13.8 147 521-681 45-192 (197)
111 2qby_A CDC6 homolog 1, cell di 99.3 1.3E-10 4.3E-15 130.6 23.2 294 163-479 19-348 (386)
112 3m19_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 129.1 14.0 151 520-680 35-189 (251)
113 1m9s_A Internalin B; cell inva 99.3 1.6E-12 5.5E-17 153.0 7.6 186 575-804 21-206 (605)
114 1h6t_A Internalin B; cell adhe 99.3 8.4E-12 2.9E-16 133.7 12.5 124 541-679 42-165 (291)
115 1xeu_A Internalin C; cellular 99.3 5.1E-12 1.7E-16 133.1 7.9 97 574-678 18-114 (263)
116 1dce_A Protein (RAB geranylger 99.2 1.8E-13 6.3E-18 160.1 -4.4 37 595-632 346-382 (567)
117 2ell_A Acidic leucine-rich nuc 99.2 1.8E-11 6E-16 119.5 10.3 133 543-683 22-160 (168)
118 3goz_A Leucine-rich repeat-con 99.2 2.7E-12 9.2E-17 142.6 4.6 143 536-680 13-177 (362)
119 3cvr_A Invasion plasmid antige 99.2 3.2E-11 1.1E-15 140.2 13.3 40 750-789 208-247 (571)
120 2v9t_B SLIT homolog 2 protein 99.2 2.8E-11 9.4E-16 123.7 11.3 129 545-681 32-163 (220)
121 1njg_A DNA polymerase III subu 99.2 1.8E-10 6.1E-15 120.3 17.5 198 164-377 23-231 (250)
122 2v70_A SLIT-2, SLIT homolog 2 99.2 3.9E-11 1.3E-15 122.6 11.8 133 545-682 32-165 (220)
123 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.6E-16 117.0 7.7 127 544-678 16-148 (149)
124 2o6s_A Variable lymphocyte rec 99.2 8.1E-11 2.8E-15 119.3 13.0 79 576-656 29-110 (208)
125 3e6j_A Variable lymphocyte rec 99.2 7.8E-11 2.7E-15 121.2 12.2 130 545-683 40-172 (229)
126 1a9n_A U2A', U2A'; complex (nu 99.2 3E-11 1E-15 118.8 8.5 131 540-681 14-151 (176)
127 1xeu_A Internalin C; cellular 99.2 7.1E-11 2.4E-15 124.3 10.4 101 571-679 37-137 (263)
128 4b8c_D Glucose-repressible alc 99.1 4.6E-11 1.6E-15 144.4 9.6 114 567-683 216-329 (727)
129 2o6s_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 116.9 12.0 130 544-682 27-160 (208)
130 2chg_A Replication factor C sm 99.1 9E-10 3.1E-14 113.0 17.4 186 164-375 17-205 (226)
131 3e6j_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 116.6 12.9 132 518-658 38-171 (229)
132 2ell_A Acidic leucine-rich nuc 99.1 8.8E-11 3E-15 114.5 8.2 135 749-942 24-165 (168)
133 2je0_A Acidic leucine-rich nuc 99.1 4.8E-11 1.7E-15 113.7 5.0 108 572-682 14-125 (149)
134 2v9t_B SLIT homolog 2 protein 99.1 3.6E-10 1.2E-14 115.4 11.8 132 518-657 30-163 (220)
135 2xot_A Amphoterin-induced prot 99.1 1.4E-10 4.7E-15 128.6 9.2 98 578-680 21-122 (361)
136 1w8a_A SLIT protein; signaling 99.1 3.5E-10 1.2E-14 112.8 10.3 107 576-682 30-138 (192)
137 2v70_A SLIT-2, SLIT homolog 2 99.1 4.4E-10 1.5E-14 114.8 11.1 134 518-658 30-165 (220)
138 1dce_A Protein (RAB geranylger 99.0 4E-10 1.4E-14 131.8 10.4 83 571-656 459-543 (567)
139 3sb4_A Hypothetical leucine ri 99.0 2.1E-09 7E-14 117.5 14.5 285 544-906 24-328 (329)
140 4b8c_D Glucose-repressible alc 99.0 5.4E-11 1.8E-15 143.8 2.0 120 538-666 217-336 (727)
141 2xot_A Amphoterin-induced prot 99.0 7.8E-10 2.7E-14 122.5 10.7 130 545-682 39-175 (361)
142 2wfh_A SLIT homolog 2 protein 99.0 1E-09 3.4E-14 109.4 10.1 105 575-681 31-137 (193)
143 1a9n_A U2A', U2A'; complex (nu 99.0 4.2E-10 1.4E-14 110.6 6.1 107 571-682 15-125 (176)
144 1hqc_A RUVB; extended AAA-ATPa 99.0 2.1E-09 7.3E-14 117.2 11.9 268 164-478 12-324 (324)
145 1sxj_B Activator 1 37 kDa subu 98.9 4.9E-09 1.7E-13 114.3 14.2 186 164-375 21-211 (323)
146 2wfh_A SLIT homolog 2 protein 98.9 3.9E-09 1.3E-13 105.1 11.8 102 578-683 13-115 (193)
147 1w8a_A SLIT protein; signaling 98.9 3.1E-09 1E-13 105.9 10.9 103 578-683 11-115 (192)
148 1ds9_A Outer arm dynein; leuci 98.9 3.1E-11 1.1E-15 121.3 -5.0 108 568-680 41-150 (198)
149 2r9u_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 103.7 8.6 102 578-683 15-118 (174)
150 1ds9_A Outer arm dynein; leuci 98.8 5.6E-11 1.9E-15 119.4 -5.5 130 537-677 40-181 (198)
151 3g39_A Variable lymphocyte rec 98.8 9.4E-09 3.2E-13 100.0 9.7 104 576-683 10-115 (170)
152 2o6r_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 99.2 10.4 105 575-682 28-136 (177)
153 2o6r_A Variable lymphocyte rec 98.8 1.7E-08 5.6E-13 99.1 10.1 108 544-659 27-137 (177)
154 3sb4_A Hypothetical leucine ri 98.8 1.6E-08 5.5E-13 110.3 10.3 285 574-930 24-328 (329)
155 1iqp_A RFCS; clamp loader, ext 98.7 4.9E-08 1.7E-12 106.5 13.0 185 164-377 25-215 (327)
156 3te6_A Regulatory protein SIR3 98.7 1.1E-07 3.7E-12 100.8 14.3 173 165-342 21-213 (318)
157 2r9u_A Variable lymphocyte rec 98.7 5.7E-08 2E-12 94.7 9.6 87 575-664 33-122 (174)
158 1jr3_A DNA polymerase III subu 98.6 3.5E-07 1.2E-11 101.7 15.8 196 164-375 16-222 (373)
159 3g39_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 92.2 9.4 82 574-657 29-113 (170)
160 2ifg_A High affinity nerve gro 98.5 1.7E-07 5.7E-12 103.2 9.4 98 580-680 13-113 (347)
161 2chq_A Replication factor C sm 98.5 5.1E-07 1.7E-11 98.0 12.6 183 164-375 17-205 (319)
162 4fdw_A Leucine rich hypothetic 98.4 9.2E-06 3.1E-10 90.4 21.3 58 872-934 298-356 (401)
163 3pfi_A Holliday junction ATP-d 98.4 6.7E-06 2.3E-10 89.8 19.9 178 164-374 29-227 (338)
164 3bos_A Putative DNA replicatio 98.4 5.6E-07 1.9E-11 93.1 10.3 174 165-375 29-218 (242)
165 1jbk_A CLPB protein; beta barr 98.4 7.7E-07 2.6E-11 88.4 10.6 45 164-214 22-66 (195)
166 1sxj_D Activator 1 41 kDa subu 98.4 4.5E-06 1.5E-10 91.9 16.1 192 164-374 37-235 (353)
167 4fdw_A Leucine rich hypothetic 98.3 2.4E-05 8E-10 87.1 20.5 59 870-932 319-379 (401)
168 4fs7_A Uncharacterized protein 98.3 1.9E-05 6.4E-10 88.2 19.9 125 539-677 65-192 (394)
169 2ifg_A High affinity nerve gro 98.3 9E-07 3.1E-11 97.3 8.7 88 568-657 25-114 (347)
170 2z4s_A Chromosomal replication 98.2 1.1E-05 3.7E-10 90.9 15.6 161 191-372 130-304 (440)
171 3h4m_A Proteasome-activating n 98.2 1.1E-05 3.8E-10 85.7 14.7 185 164-373 17-230 (285)
172 1sxj_E Activator 1 40 kDa subu 98.2 9.2E-06 3.2E-10 89.4 13.6 197 164-375 14-238 (354)
173 3uk6_A RUVB-like 2; hexameric 98.2 1.3E-05 4.3E-10 88.8 14.3 195 164-373 44-302 (368)
174 1sxj_A Activator 1 95 kDa subu 98.1 8.5E-06 2.9E-10 94.1 12.6 196 164-375 39-254 (516)
175 3syl_A Protein CBBX; photosynt 98.1 1.7E-05 5.7E-10 85.4 13.8 162 165-342 32-219 (309)
176 3un9_A NLR family member X1; l 98.1 4E-07 1.4E-11 100.5 0.3 133 545-683 101-252 (372)
177 1d2n_A N-ethylmaleimide-sensit 98.1 9E-05 3.1E-09 77.9 18.5 171 164-365 33-228 (272)
178 3pvs_A Replication-associated 98.1 2.1E-05 7.1E-10 88.4 14.2 180 164-374 26-215 (447)
179 1a5t_A Delta prime, HOLB; zinc 98.1 8E-05 2.7E-09 80.7 17.6 184 170-374 8-205 (334)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.5E-05 1.2E-09 80.5 14.3 187 164-373 6-221 (262)
181 3n70_A Transport activator; si 98.1 7.4E-06 2.5E-10 76.8 8.0 114 165-309 2-115 (145)
182 3u61_B DNA polymerase accessor 98.0 2.5E-05 8.4E-10 84.7 13.1 175 164-371 26-213 (324)
183 1l8q_A Chromosomal replication 98.0 6.5E-05 2.2E-09 81.3 16.1 154 191-368 37-202 (324)
184 2p65_A Hypothetical protein PF 98.0 8.6E-06 3E-10 80.2 8.4 45 164-214 22-66 (187)
185 2ra8_A Uncharacterized protein 98.0 7.6E-07 2.6E-11 97.3 -0.0 146 764-934 164-318 (362)
186 3eie_A Vacuolar protein sortin 98.0 8.1E-05 2.8E-09 80.3 15.5 183 164-374 18-228 (322)
187 2qp9_X Vacuolar protein sortin 98.0 7.6E-05 2.6E-09 81.5 15.1 185 164-374 51-261 (355)
188 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00035 1.2E-08 75.1 19.4 187 164-375 12-224 (322)
189 3e4g_A ATP synthase subunit S, 97.9 3.4E-06 1.2E-10 80.5 3.0 85 874-959 61-155 (176)
190 1sxj_C Activator 1 40 kDa subu 97.9 0.00011 3.6E-09 80.1 15.1 175 164-370 25-208 (340)
191 3ec2_A DNA replication protein 97.9 1.9E-05 6.6E-10 77.2 8.1 121 169-309 19-142 (180)
192 3d8b_A Fidgetin-like protein 1 97.9 0.00013 4.5E-09 79.8 15.5 188 164-375 84-296 (357)
193 4fs7_A Uncharacterized protein 97.9 0.00023 8E-09 79.3 17.7 102 568-677 64-169 (394)
194 3e4g_A ATP synthase subunit S, 97.9 5.8E-06 2E-10 78.9 3.5 38 900-937 115-153 (176)
195 4gt6_A Cell surface protein; l 97.9 0.00025 8.7E-09 79.0 17.5 105 540-655 58-169 (394)
196 3cf0_A Transitional endoplasmi 97.8 0.00018 6E-09 76.8 14.3 181 164-369 15-223 (301)
197 3un9_A NLR family member X1; l 97.8 2.7E-06 9.4E-11 93.7 -0.3 136 544-681 71-222 (372)
198 1in4_A RUVB, holliday junction 97.8 0.0017 5.7E-08 70.2 21.5 177 164-373 25-222 (334)
199 3b9p_A CG5977-PA, isoform A; A 97.8 0.00045 1.5E-08 73.6 16.8 184 164-374 21-233 (297)
200 3co5_A Putative two-component 97.8 1.9E-05 6.5E-10 73.8 5.0 111 164-309 4-115 (143)
201 2gno_A DNA polymerase III, gam 97.8 0.00023 7.8E-09 75.5 13.9 149 168-340 1-152 (305)
202 2w58_A DNAI, primosome compone 97.8 1.9E-05 6.3E-10 79.0 5.2 118 172-309 37-158 (202)
203 1io0_A Tropomodulin; LRR prote 97.8 2.6E-05 8.9E-10 76.5 6.0 113 541-656 32-161 (185)
204 2ra8_A Uncharacterized protein 97.7 1.2E-05 4E-10 87.8 3.8 138 541-680 135-289 (362)
205 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.6E-10 78.0 3.6 114 567-681 28-162 (185)
206 4h09_A Hypothetical leucine ri 97.7 0.0015 5E-08 72.3 19.8 59 870-931 282-341 (379)
207 3rw6_A Nuclear RNA export fact 97.7 4.5E-05 1.5E-09 78.7 6.3 79 572-652 167-257 (267)
208 3vfd_A Spastin; ATPase, microt 97.6 0.00073 2.5E-08 74.9 16.5 187 164-374 115-326 (389)
209 3hu3_A Transitional endoplasmi 97.6 0.00017 5.9E-09 81.8 11.3 185 164-373 204-414 (489)
210 4fcw_A Chaperone protein CLPB; 97.6 0.00026 9E-09 76.0 12.0 138 165-309 18-169 (311)
211 4b4t_J 26S protease regulatory 97.6 0.00084 2.9E-08 72.8 15.5 179 164-367 148-354 (405)
212 2zan_A Vacuolar protein sortin 97.6 0.00051 1.7E-08 77.4 14.5 188 164-374 134-345 (444)
213 1qvr_A CLPB protein; coiled co 97.6 0.00013 4.4E-09 89.8 10.1 154 164-339 170-344 (854)
214 2bjv_A PSP operon transcriptio 97.6 0.00027 9.3E-09 73.8 10.8 132 165-309 7-150 (265)
215 3rw6_A Nuclear RNA export fact 97.5 1.9E-05 6.6E-10 81.4 1.3 104 573-678 139-259 (267)
216 3pxg_A Negative regulator of g 97.5 0.00016 5.6E-09 82.1 8.4 45 164-214 180-224 (468)
217 4gt6_A Cell surface protein; l 97.5 0.011 3.8E-07 65.5 23.3 104 569-677 57-167 (394)
218 4b4t_K 26S protease regulatory 97.5 0.00099 3.4E-08 73.4 14.2 179 164-367 172-379 (428)
219 1ojl_A Transcriptional regulat 97.4 0.00027 9.1E-09 75.3 9.1 132 164-309 2-146 (304)
220 1lv7_A FTSH; alpha/beta domain 97.4 0.0029 9.9E-08 65.6 16.5 183 164-371 12-222 (257)
221 2kjq_A DNAA-related protein; s 97.4 0.00015 5.2E-09 67.9 5.4 86 192-309 37-124 (149)
222 4b4t_H 26S protease regulatory 97.4 0.0023 7.8E-08 70.4 15.4 179 164-367 209-415 (467)
223 4b4t_L 26S protease subunit RP 97.4 0.0017 5.9E-08 71.6 14.2 179 164-367 181-387 (437)
224 1ofh_A ATP-dependent HSL prote 97.3 0.0006 2.1E-08 73.1 10.5 153 164-338 15-213 (310)
225 3pxi_A Negative regulator of g 97.3 0.00048 1.6E-08 83.7 10.5 155 164-339 491-674 (758)
226 2c9o_A RUVB-like 1; hexameric 97.3 0.0015 5.2E-08 73.9 13.3 94 272-373 297-409 (456)
227 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0014 4.8E-08 79.7 12.9 156 164-340 186-362 (758)
228 4b4t_M 26S protease regulatory 97.2 0.0016 5.5E-08 71.8 11.9 178 164-367 181-387 (434)
229 2ce7_A Cell division protein F 97.2 0.0025 8.5E-08 71.5 13.6 179 164-367 16-221 (476)
230 4b4t_I 26S protease regulatory 97.1 0.0045 1.5E-07 67.4 13.9 178 164-367 182-388 (437)
231 3pxi_A Negative regulator of g 97.0 0.00082 2.8E-08 81.6 8.2 149 164-340 180-338 (758)
232 2r44_A Uncharacterized protein 97.0 0.002 6.8E-08 69.7 9.9 152 165-342 28-200 (331)
233 2r62_A Cell division protease 96.9 0.00013 4.5E-09 76.4 -0.2 180 164-368 11-219 (268)
234 3t15_A Ribulose bisphosphate c 96.9 0.002 6.8E-08 68.1 8.8 25 190-214 35-59 (293)
235 4h09_A Hypothetical leucine ri 96.9 0.046 1.6E-06 60.1 20.2 68 870-942 259-327 (379)
236 1qvr_A CLPB protein; coiled co 96.8 0.0036 1.2E-07 76.9 11.5 135 165-309 559-710 (854)
237 3cf2_A TER ATPase, transitiona 96.8 0.0045 1.6E-07 73.7 11.6 179 164-367 204-407 (806)
238 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0007 2.4E-08 70.8 4.1 70 190-281 122-193 (331)
239 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0042 1.4E-07 75.5 11.7 133 164-309 458-607 (758)
240 2cvh_A DNA repair and recombin 96.7 0.0051 1.8E-07 61.9 10.1 86 190-281 19-116 (220)
241 2qgz_A Helicase loader, putati 96.7 0.0015 5E-08 69.6 5.5 56 170-229 134-189 (308)
242 1ypw_A Transitional endoplasmi 96.5 0.0063 2.2E-07 73.7 10.7 179 164-367 204-407 (806)
243 2b8t_A Thymidine kinase; deoxy 96.5 0.0035 1.2E-07 62.5 6.7 113 190-310 11-126 (223)
244 3m6a_A ATP-dependent protease 96.5 0.0026 9E-08 73.4 6.6 162 164-340 81-266 (543)
245 2dhr_A FTSH; AAA+ protein, hex 96.3 0.022 7.6E-07 64.2 12.3 175 164-367 31-236 (499)
246 1ixz_A ATP-dependent metallopr 96.2 0.023 7.7E-07 58.6 11.5 178 164-367 16-221 (254)
247 1um8_A ATP-dependent CLP prote 96.1 0.022 7.6E-07 62.6 11.2 22 192-213 73-94 (376)
248 1g5t_A COB(I)alamin adenosyltr 96.1 0.011 3.7E-07 57.1 7.2 117 192-310 29-163 (196)
249 1jr3_D DNA polymerase III, del 96.0 0.063 2.2E-06 58.0 14.1 157 191-373 18-184 (343)
250 2x8a_A Nuclear valosin-contain 96.0 0.033 1.1E-06 58.0 11.3 154 165-340 11-191 (274)
251 1iy2_A ATP-dependent metallopr 96.0 0.036 1.2E-06 57.9 11.7 178 164-367 40-245 (278)
252 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.023 8E-07 57.5 9.7 114 192-310 24-168 (235)
253 1ye8_A Protein THEP1, hypothet 95.9 0.071 2.4E-06 51.2 12.1 22 193-214 2-23 (178)
254 3lw7_A Adenylate kinase relate 95.8 0.083 2.8E-06 50.5 12.8 19 193-211 3-21 (179)
255 3hr8_A Protein RECA; alpha and 95.8 0.019 6.4E-07 61.7 8.6 85 190-281 60-150 (356)
256 1g8p_A Magnesium-chelatase 38 95.8 0.022 7.6E-07 61.9 9.2 45 164-214 24-68 (350)
257 4gp7_A Metallophosphoesterase; 95.6 0.01 3.6E-07 56.8 5.0 24 190-213 8-31 (171)
258 2z43_A DNA repair and recombin 95.5 0.038 1.3E-06 59.1 9.5 57 190-247 106-166 (324)
259 1n0w_A DNA repair protein RAD5 95.4 0.027 9.3E-07 57.4 7.8 91 190-281 23-130 (243)
260 1xp8_A RECA protein, recombina 95.4 0.041 1.4E-06 59.6 9.2 84 190-280 73-162 (366)
261 2i1q_A DNA repair and recombin 95.4 0.029 1E-06 60.1 8.1 57 190-247 97-167 (322)
262 3io5_A Recombination and repai 95.4 0.038 1.3E-06 57.5 8.4 82 193-281 30-122 (333)
263 2pze_A Cystic fibrosis transme 95.3 0.19 6.7E-06 50.4 13.6 54 262-315 140-195 (229)
264 1v5w_A DMC1, meiotic recombina 95.3 0.048 1.6E-06 58.8 9.5 57 190-247 121-181 (343)
265 2cbz_A Multidrug resistance-as 95.3 0.095 3.2E-06 53.0 11.1 52 263-314 138-193 (237)
266 2zr9_A Protein RECA, recombina 95.2 0.045 1.6E-06 58.9 9.1 85 190-281 60-150 (349)
267 1rz3_A Hypothetical protein rb 95.2 0.019 6.5E-07 56.7 5.6 42 169-213 3-44 (201)
268 1cr0_A DNA primase/helicase; R 95.1 0.079 2.7E-06 55.9 10.3 24 191-214 35-58 (296)
269 2px0_A Flagellar biosynthesis 94.9 0.048 1.6E-06 57.3 7.8 86 190-278 104-190 (296)
270 3tqc_A Pantothenate kinase; bi 94.9 0.067 2.3E-06 56.5 8.8 101 167-270 70-171 (321)
271 1u94_A RECA protein, recombina 94.7 0.062 2.1E-06 57.9 8.4 85 190-281 62-152 (356)
272 2orw_A Thymidine kinase; TMTK, 94.6 0.012 4.2E-07 57.0 2.3 107 192-309 4-112 (184)
273 4eun_A Thermoresistant glucoki 94.6 0.073 2.5E-06 52.3 8.0 24 190-213 28-51 (200)
274 2p5t_B PEZT; postsegregational 94.6 0.063 2.1E-06 55.1 7.7 41 172-213 14-54 (253)
275 3ice_A Transcription terminati 94.3 0.026 8.9E-07 60.2 4.0 34 175-213 163-196 (422)
276 1odf_A YGR205W, hypothetical 3 94.3 0.21 7.2E-06 52.1 11.0 80 190-269 30-117 (290)
277 2nq2_C Hypothetical ABC transp 94.2 0.27 9.1E-06 50.2 11.5 23 192-214 32-54 (253)
278 3c8u_A Fructokinase; YP_612366 94.2 0.03 1E-06 55.6 4.3 37 173-213 8-44 (208)
279 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.025 8.5E-07 64.0 3.9 42 165-214 23-64 (500)
280 1qhx_A CPT, protein (chloramph 94.2 0.02 7E-07 55.1 2.8 22 192-213 4-25 (178)
281 3bh0_A DNAB-like replicative h 94.2 0.26 8.8E-06 52.3 11.7 53 190-246 67-119 (315)
282 1sky_E F1-ATPase, F1-ATP synth 94.2 0.057 1.9E-06 59.7 6.5 51 192-243 152-203 (473)
283 1zp6_A Hypothetical protein AT 94.1 0.028 9.5E-07 54.9 3.7 25 190-214 8-32 (191)
284 2dr3_A UPF0273 protein PH0284; 94.1 0.2 7E-06 50.9 10.4 39 191-231 23-61 (247)
285 2pjz_A Hypothetical protein ST 94.0 0.3 1E-05 50.1 11.3 119 193-314 32-189 (263)
286 3cf2_A TER ATPase, transitiona 94.0 0.076 2.6E-06 63.2 7.7 157 164-340 477-661 (806)
287 3tui_C Methionine import ATP-b 94.0 0.43 1.5E-05 51.2 12.8 57 260-316 171-230 (366)
288 1vma_A Cell division protein F 94.0 0.13 4.4E-06 54.1 8.6 88 190-280 103-196 (306)
289 1ly1_A Polynucleotide kinase; 93.9 0.03 1E-06 54.0 3.4 22 192-213 3-24 (181)
290 3kb2_A SPBC2 prophage-derived 93.9 0.028 9.5E-07 53.8 3.1 22 192-213 2-23 (173)
291 1pzn_A RAD51, DNA repair and r 93.9 0.11 3.8E-06 55.9 8.2 48 190-237 130-181 (349)
292 3lda_A DNA repair protein RAD5 93.8 0.15 5E-06 55.9 9.0 57 190-247 177-237 (400)
293 2bbs_A Cystic fibrosis transme 93.8 0.52 1.8E-05 49.0 12.9 54 262-315 169-224 (290)
294 3rfe_A Platelet glycoprotein I 93.8 0.088 3E-06 47.5 6.0 53 578-633 11-66 (130)
295 3hws_A ATP-dependent CLP prote 93.8 0.035 1.2E-06 60.6 4.0 50 165-214 16-74 (363)
296 3vaa_A Shikimate kinase, SK; s 93.7 0.029 9.8E-07 55.3 2.9 23 191-213 25-47 (199)
297 1zuh_A Shikimate kinase; alpha 93.6 0.027 9.2E-07 53.7 2.4 24 190-213 6-29 (168)
298 1kag_A SKI, shikimate kinase I 93.6 0.029 9.8E-07 53.8 2.6 22 192-213 5-26 (173)
299 3uie_A Adenylyl-sulfate kinase 93.6 0.041 1.4E-06 54.2 3.8 25 190-214 24-48 (200)
300 1fx0_B ATP synthase beta chain 93.5 0.2 6.9E-06 55.4 9.4 99 175-279 154-275 (498)
301 4akg_A Glutathione S-transfera 93.5 0.51 1.7E-05 63.8 14.9 138 192-340 1268-1431(2695)
302 3trf_A Shikimate kinase, SK; a 93.5 0.03 1E-06 54.3 2.5 23 191-213 5-27 (185)
303 2rhm_A Putative kinase; P-loop 93.5 0.045 1.5E-06 53.4 3.8 24 190-213 4-27 (193)
304 1kgd_A CASK, peripheral plasma 93.4 0.034 1.2E-06 53.7 2.8 23 191-213 5-27 (180)
305 1nks_A Adenylate kinase; therm 93.4 0.038 1.3E-06 54.0 3.2 22 192-213 2-23 (194)
306 1knq_A Gluconate kinase; ALFA/ 93.4 0.048 1.6E-06 52.3 3.8 24 190-213 7-30 (175)
307 1gvn_B Zeta; postsegregational 93.4 0.07 2.4E-06 55.8 5.3 41 172-213 15-55 (287)
308 1z47_A CYSA, putative ABC-tran 93.3 0.6 2E-05 50.0 12.4 57 261-317 154-213 (355)
309 2qt1_A Nicotinamide riboside k 93.1 0.055 1.9E-06 53.6 3.9 25 190-214 20-44 (207)
310 2it1_A 362AA long hypothetical 93.1 0.74 2.5E-05 49.4 12.8 23 192-214 30-52 (362)
311 2ga8_A Hypothetical 39.9 kDa p 93.1 0.076 2.6E-06 56.4 5.0 44 168-213 3-46 (359)
312 2bdt_A BH3686; alpha-beta prot 93.1 0.05 1.7E-06 52.9 3.4 22 192-213 3-24 (189)
313 1uf9_A TT1252 protein; P-loop, 93.1 0.049 1.7E-06 53.7 3.4 24 190-213 7-30 (203)
314 3dm5_A SRP54, signal recogniti 93.0 0.52 1.8E-05 51.9 11.7 24 190-213 99-122 (443)
315 3jvv_A Twitching mobility prot 93.0 0.069 2.4E-06 57.6 4.6 112 191-313 123-234 (356)
316 1kht_A Adenylate kinase; phosp 93.0 0.043 1.5E-06 53.5 2.8 22 192-213 4-25 (192)
317 4a1f_A DNAB helicase, replicat 93.0 0.19 6.4E-06 53.5 7.9 52 191-246 46-97 (338)
318 1y63_A LMAJ004144AAA protein; 93.0 0.042 1.4E-06 53.3 2.7 24 190-213 9-32 (184)
319 3asz_A Uridine kinase; cytidin 93.0 0.056 1.9E-06 53.7 3.7 24 190-213 5-28 (211)
320 3t61_A Gluconokinase; PSI-biol 92.9 0.041 1.4E-06 54.2 2.6 23 191-213 18-40 (202)
321 3upu_A ATP-dependent DNA helic 92.9 0.19 6.5E-06 56.6 8.4 37 171-214 32-68 (459)
322 3fwy_A Light-independent proto 92.9 0.054 1.8E-06 57.3 3.5 40 189-230 46-85 (314)
323 1ukz_A Uridylate kinase; trans 92.9 0.06 2.1E-06 53.1 3.7 24 190-213 14-37 (203)
324 2grj_A Dephospho-COA kinase; T 92.9 0.057 2E-06 52.5 3.5 25 189-213 10-34 (192)
325 1jjv_A Dephospho-COA kinase; P 92.9 0.057 1.9E-06 53.4 3.5 22 192-213 3-24 (206)
326 3iij_A Coilin-interacting nucl 92.8 0.042 1.4E-06 53.0 2.5 23 191-213 11-33 (180)
327 2ze6_A Isopentenyl transferase 92.8 0.055 1.9E-06 55.5 3.4 22 192-213 2-23 (253)
328 1tev_A UMP-CMP kinase; ploop, 92.8 0.051 1.7E-06 53.1 3.1 23 191-213 3-25 (196)
329 1uj2_A Uridine-cytidine kinase 92.8 0.051 1.7E-06 55.8 3.2 24 190-213 21-44 (252)
330 3tr0_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 53.6 3.2 22 192-213 8-29 (205)
331 2if2_A Dephospho-COA kinase; a 92.7 0.057 1.9E-06 53.3 3.3 21 193-213 3-23 (204)
332 2c95_A Adenylate kinase 1; tra 92.7 0.048 1.6E-06 53.4 2.8 23 191-213 9-31 (196)
333 3d31_A Sulfate/molybdate ABC t 92.7 0.62 2.1E-05 49.8 11.6 125 192-316 27-194 (348)
334 3tau_A Guanylate kinase, GMP k 92.7 0.053 1.8E-06 53.8 3.0 25 190-214 7-31 (208)
335 3umf_A Adenylate kinase; rossm 92.7 0.058 2E-06 53.5 3.2 25 189-213 27-51 (217)
336 1via_A Shikimate kinase; struc 92.7 0.047 1.6E-06 52.4 2.6 21 193-213 6-26 (175)
337 2yyz_A Sugar ABC transporter, 92.6 0.81 2.8E-05 49.1 12.3 23 192-214 30-52 (359)
338 2jaq_A Deoxyguanosine kinase; 92.6 0.053 1.8E-06 53.5 2.8 21 193-213 2-22 (205)
339 2yvu_A Probable adenylyl-sulfa 92.6 0.073 2.5E-06 51.6 3.8 25 190-214 12-36 (186)
340 3zvl_A Bifunctional polynucleo 92.5 0.24 8.1E-06 54.9 8.4 25 190-214 257-281 (416)
341 3cm0_A Adenylate kinase; ATP-b 92.5 0.072 2.5E-06 51.6 3.7 23 191-213 4-26 (186)
342 3a00_A Guanylate kinase, GMP k 92.5 0.046 1.6E-06 53.1 2.2 22 192-213 2-23 (186)
343 1cke_A CK, MSSA, protein (cyti 92.5 0.061 2.1E-06 54.2 3.2 22 192-213 6-27 (227)
344 2j41_A Guanylate kinase; GMP, 92.5 0.059 2E-06 53.3 3.0 24 191-214 6-29 (207)
345 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.068 2.3E-06 55.1 3.5 23 191-213 4-26 (260)
346 3l0o_A Transcription terminati 92.4 0.43 1.5E-05 50.9 9.5 36 174-214 163-198 (427)
347 2iyv_A Shikimate kinase, SK; t 92.4 0.05 1.7E-06 52.7 2.4 21 193-213 4-24 (184)
348 1qf9_A UMP/CMP kinase, protein 92.4 0.066 2.2E-06 52.2 3.2 24 190-213 5-28 (194)
349 2qor_A Guanylate kinase; phosp 92.4 0.05 1.7E-06 53.7 2.3 24 190-213 11-34 (204)
350 1ex7_A Guanylate kinase; subst 92.3 0.048 1.6E-06 52.6 2.1 22 192-213 2-23 (186)
351 2bwj_A Adenylate kinase 5; pho 92.3 0.063 2.1E-06 52.7 3.0 23 191-213 12-34 (199)
352 2ck3_D ATP synthase subunit be 92.3 0.46 1.6E-05 52.3 10.0 65 175-245 142-207 (482)
353 1xjc_A MOBB protein homolog; s 92.3 0.064 2.2E-06 50.6 2.8 24 190-213 3-26 (169)
354 2ffh_A Protein (FFH); SRP54, s 92.3 0.34 1.2E-05 53.3 9.0 24 191-214 98-121 (425)
355 1pgv_A TMD-1, tropomodulin TMD 92.3 0.18 6.2E-06 48.8 6.1 38 572-609 67-109 (197)
356 2pt5_A Shikimate kinase, SK; a 92.3 0.062 2.1E-06 51.1 2.8 21 193-213 2-22 (168)
357 2plr_A DTMP kinase, probable t 92.2 0.066 2.3E-06 53.2 3.1 23 192-214 5-27 (213)
358 3rlf_A Maltose/maltodextrin im 92.2 0.47 1.6E-05 51.2 9.7 23 192-214 30-52 (381)
359 1e6c_A Shikimate kinase; phosp 92.1 0.054 1.9E-06 51.7 2.2 22 192-213 3-24 (173)
360 3tlx_A Adenylate kinase 2; str 92.1 0.087 3E-06 53.6 3.7 24 190-213 28-51 (243)
361 2cdn_A Adenylate kinase; phosp 92.0 0.076 2.6E-06 52.3 3.2 24 190-213 19-42 (201)
362 2pbr_A DTMP kinase, thymidylat 92.0 0.069 2.4E-06 52.1 2.8 21 193-213 2-22 (195)
363 2f6r_A COA synthase, bifunctio 92.0 0.095 3.2E-06 54.7 4.0 24 190-213 74-97 (281)
364 3e70_C DPA, signal recognition 92.0 0.42 1.4E-05 50.7 9.1 25 190-214 128-152 (328)
365 3vr4_D V-type sodium ATPase su 92.0 0.14 4.8E-06 56.1 5.3 88 192-279 152-257 (465)
366 3aez_A Pantothenate kinase; tr 92.0 0.085 2.9E-06 55.8 3.6 24 190-213 89-112 (312)
367 2bbw_A Adenylate kinase 4, AK4 91.9 0.076 2.6E-06 54.2 3.2 23 191-213 27-49 (246)
368 1lvg_A Guanylate kinase, GMP k 91.9 0.06 2.1E-06 52.8 2.3 22 192-213 5-26 (198)
369 3llm_A ATP-dependent RNA helic 91.9 0.51 1.8E-05 47.5 9.4 89 192-281 77-187 (235)
370 1tue_A Replication protein E1; 91.9 0.087 3E-06 51.0 3.2 37 173-214 45-81 (212)
371 2jeo_A Uridine-cytidine kinase 91.8 0.092 3.1E-06 53.6 3.6 24 190-213 24-47 (245)
372 3kl4_A SRP54, signal recogniti 91.8 0.6 2.1E-05 51.4 10.2 25 190-214 96-120 (433)
373 2vli_A Antibiotic resistance p 91.7 0.06 2E-06 52.0 2.0 23 191-213 5-27 (183)
374 3ney_A 55 kDa erythrocyte memb 91.7 0.081 2.8E-06 51.4 2.8 24 190-213 18-41 (197)
375 2yhs_A FTSY, cell division pro 91.7 0.42 1.4E-05 53.2 8.9 42 190-234 292-333 (503)
376 1zu4_A FTSY; GTPase, signal re 91.7 0.36 1.2E-05 51.1 8.1 24 190-213 104-127 (320)
377 1nn5_A Similar to deoxythymidy 91.7 0.079 2.7E-06 52.7 2.8 23 191-213 9-31 (215)
378 1ls1_A Signal recognition part 91.6 0.41 1.4E-05 50.1 8.4 24 191-214 98-121 (295)
379 1aky_A Adenylate kinase; ATP:A 91.6 0.074 2.5E-06 53.2 2.6 23 191-213 4-26 (220)
380 4e22_A Cytidylate kinase; P-lo 91.6 0.088 3E-06 53.9 3.2 23 191-213 27-49 (252)
381 1sq5_A Pantothenate kinase; P- 91.5 0.19 6.5E-06 53.2 5.8 24 190-213 79-102 (308)
382 1htw_A HI0065; nucleotide-bind 91.5 0.12 4E-06 48.5 3.7 24 190-213 32-55 (158)
383 2wwf_A Thymidilate kinase, put 91.5 0.086 2.9E-06 52.3 3.0 23 191-213 10-32 (212)
384 3gqb_B V-type ATP synthase bet 91.5 0.17 5.8E-06 55.4 5.4 88 192-279 148-260 (464)
385 1znw_A Guanylate kinase, GMP k 91.5 0.095 3.2E-06 51.9 3.2 24 190-213 19-42 (207)
386 1q57_A DNA primase/helicase; d 91.4 0.45 1.5E-05 54.3 9.2 55 190-247 241-295 (503)
387 3e1s_A Exodeoxyribonuclease V, 91.4 0.2 6.9E-06 57.8 6.3 102 192-306 205-312 (574)
388 2xxa_A Signal recognition part 91.4 0.41 1.4E-05 52.9 8.5 24 190-213 99-122 (433)
389 1pgv_A TMD-1, tropomodulin TMD 91.4 0.25 8.6E-06 47.8 5.9 89 567-656 33-136 (197)
390 3vkw_A Replicase large subunit 91.4 0.54 1.9E-05 51.6 9.2 26 188-213 158-183 (446)
391 3fb4_A Adenylate kinase; psych 91.3 0.088 3E-06 52.5 2.8 21 193-213 2-22 (216)
392 2pez_A Bifunctional 3'-phospho 91.3 0.11 3.9E-06 49.8 3.5 24 190-213 4-27 (179)
393 2z0h_A DTMP kinase, thymidylat 91.3 0.092 3.1E-06 51.4 2.8 21 193-213 2-22 (197)
394 1zd8_A GTP:AMP phosphotransfer 91.3 0.11 3.6E-06 52.4 3.3 23 191-213 7-29 (227)
395 1oxx_K GLCV, glucose, ABC tran 91.2 1.1 3.6E-05 48.1 11.3 23 192-214 32-54 (353)
396 1j8m_F SRP54, signal recogniti 91.1 0.39 1.3E-05 50.3 7.6 23 191-213 98-120 (297)
397 3dl0_A Adenylate kinase; phosp 91.1 0.11 3.7E-06 51.8 3.2 21 193-213 2-22 (216)
398 1m7g_A Adenylylsulfate kinase; 91.0 0.13 4.4E-06 51.1 3.7 24 190-213 24-47 (211)
399 1vht_A Dephospho-COA kinase; s 90.9 0.13 4.4E-06 51.3 3.6 23 191-213 4-26 (218)
400 1z6g_A Guanylate kinase; struc 90.9 0.096 3.3E-06 52.3 2.6 23 191-213 23-45 (218)
401 1s96_A Guanylate kinase, GMP k 90.9 0.11 3.7E-06 51.8 2.9 24 190-213 15-38 (219)
402 2ewv_A Twitching motility prot 90.9 0.23 8E-06 53.9 5.8 111 190-312 135-246 (372)
403 2v54_A DTMP kinase, thymidylat 90.9 0.11 3.6E-06 51.3 2.8 23 192-214 5-27 (204)
404 2pt7_A CAG-ALFA; ATPase, prote 90.8 0.32 1.1E-05 51.8 6.7 105 192-311 172-276 (330)
405 3bgw_A DNAB-like replicative h 90.8 1.1 3.8E-05 49.8 11.3 53 190-246 196-248 (444)
406 1zak_A Adenylate kinase; ATP:A 90.7 0.091 3.1E-06 52.7 2.2 23 191-213 5-27 (222)
407 2f1r_A Molybdopterin-guanine d 90.7 0.085 2.9E-06 50.2 1.8 23 192-214 3-25 (171)
408 4a74_A DNA repair and recombin 90.7 0.14 4.7E-06 51.6 3.6 45 190-234 24-72 (231)
409 2c61_A A-type ATP synthase non 90.7 0.23 8E-06 54.7 5.5 88 192-279 153-258 (469)
410 2i3b_A HCR-ntpase, human cance 90.7 0.11 3.6E-06 50.5 2.5 22 193-214 3-24 (189)
411 3ake_A Cytidylate kinase; CMP 90.6 0.13 4.3E-06 50.9 3.2 21 193-213 4-24 (208)
412 1rj9_A FTSY, signal recognitio 90.6 0.12 4E-06 54.5 3.0 24 190-213 101-124 (304)
413 1tf7_A KAIC; homohexamer, hexa 90.6 0.23 7.9E-06 57.0 5.8 116 190-310 280-417 (525)
414 1gtv_A TMK, thymidylate kinase 90.5 0.083 2.8E-06 52.5 1.7 22 193-214 2-23 (214)
415 2r9v_A ATP synthase subunit al 90.5 0.39 1.3E-05 53.2 7.1 85 192-280 176-277 (515)
416 3b5x_A Lipid A export ATP-bind 90.5 1.2 4.2E-05 51.6 11.8 24 191-214 369-392 (582)
417 2hf9_A Probable hydrogenase ni 90.3 0.21 7.2E-06 50.0 4.6 25 190-214 37-61 (226)
418 3r20_A Cytidylate kinase; stru 90.3 0.14 4.9E-06 51.2 3.2 23 191-213 9-31 (233)
419 2pcj_A ABC transporter, lipopr 90.3 0.14 4.8E-06 51.2 3.2 22 192-213 31-52 (224)
420 2ehv_A Hypothetical protein PH 90.3 0.14 4.7E-06 52.3 3.2 24 190-213 29-52 (251)
421 1e4v_A Adenylate kinase; trans 90.3 0.13 4.6E-06 51.1 3.0 21 193-213 2-22 (214)
422 3nwj_A ATSK2; P loop, shikimat 90.3 0.12 4.1E-06 52.6 2.6 22 192-213 49-70 (250)
423 2q6t_A DNAB replication FORK h 90.2 0.69 2.4E-05 51.7 9.2 54 190-246 199-252 (444)
424 3ozx_A RNAse L inhibitor; ATP 90.2 1.3 4.3E-05 50.7 11.3 25 190-214 24-48 (538)
425 2onk_A Molybdate/tungstate ABC 90.2 0.13 4.4E-06 52.1 2.8 23 192-214 25-47 (240)
426 2qe7_A ATP synthase subunit al 90.2 0.44 1.5E-05 52.8 7.2 96 175-279 151-263 (502)
427 3b9q_A Chloroplast SRP recepto 90.2 0.16 5.5E-06 53.4 3.6 25 190-214 99-123 (302)
428 3d3q_A TRNA delta(2)-isopenten 90.2 0.15 5.2E-06 54.0 3.4 22 192-213 8-29 (340)
429 3be4_A Adenylate kinase; malar 90.1 0.14 4.7E-06 51.1 3.0 22 192-213 6-27 (217)
430 3cmu_A Protein RECA, recombina 90.1 0.3 1E-05 63.7 6.6 84 190-280 1426-1515(2050)
431 3tif_A Uncharacterized ABC tra 90.0 0.15 5E-06 51.5 3.1 22 192-213 32-53 (235)
432 2wsm_A Hydrogenase expression/ 90.0 0.2 6.7E-06 50.0 4.0 25 190-214 29-53 (221)
433 1g41_A Heat shock protein HSLU 90.0 0.22 7.4E-06 55.0 4.6 50 164-213 15-72 (444)
434 3hjn_A DTMP kinase, thymidylat 89.9 0.55 1.9E-05 45.8 7.0 22 193-214 2-23 (197)
435 3p32_A Probable GTPase RV1496/ 89.9 0.25 8.5E-06 53.5 5.0 37 173-213 65-101 (355)
436 3lnc_A Guanylate kinase, GMP k 89.9 0.11 3.7E-06 52.4 2.0 23 191-213 27-50 (231)
437 2j37_W Signal recognition part 89.9 1.5 5E-05 49.4 11.3 25 189-213 99-123 (504)
438 2xb4_A Adenylate kinase; ATP-b 89.9 0.16 5.4E-06 50.9 3.2 21 193-213 2-22 (223)
439 3sr0_A Adenylate kinase; phosp 89.8 0.15 5.1E-06 50.2 2.8 21 193-213 2-22 (206)
440 3j16_B RLI1P; ribosome recycli 89.8 1.5 5E-05 50.8 11.5 125 192-316 379-534 (608)
441 3a8t_A Adenylate isopentenyltr 89.7 0.19 6.6E-06 53.0 3.7 25 190-214 39-63 (339)
442 1np6_A Molybdopterin-guanine d 89.7 0.16 5.4E-06 48.4 2.8 25 190-214 5-29 (174)
443 3bk7_A ABC transporter ATP-bin 89.6 2 6.8E-05 49.8 12.5 126 192-317 383-539 (607)
444 2xau_A PRE-mRNA-splicing facto 89.5 2.1 7.3E-05 51.3 13.1 33 172-212 98-130 (773)
445 3gfo_A Cobalt import ATP-bindi 89.4 0.17 5.9E-06 52.2 3.1 22 192-213 35-56 (275)
446 3b85_A Phosphate starvation-in 89.4 0.13 4.6E-06 50.6 2.1 23 192-214 23-45 (208)
447 1yrb_A ATP(GTP)binding protein 89.4 0.22 7.4E-06 51.3 3.9 25 189-213 12-36 (262)
448 3crm_A TRNA delta(2)-isopenten 89.4 0.19 6.6E-06 52.8 3.4 23 191-213 5-27 (323)
449 1b0u_A Histidine permease; ABC 89.3 0.18 6.1E-06 51.8 3.1 23 192-214 33-55 (262)
450 1ak2_A Adenylate kinase isoenz 89.3 0.17 5.7E-06 51.1 2.8 23 191-213 16-38 (233)
451 1ji0_A ABC transporter; ATP bi 89.2 0.19 6.3E-06 51.0 3.1 23 192-214 33-55 (240)
452 1sgw_A Putative ABC transporte 89.2 0.16 5.4E-06 50.3 2.5 23 192-214 36-58 (214)
453 1mv5_A LMRA, multidrug resista 89.1 0.2 6.9E-06 50.8 3.3 24 191-214 28-51 (243)
454 3k1j_A LON protease, ATP-depen 89.1 0.26 9E-06 57.6 4.7 43 164-214 41-83 (604)
455 1ltq_A Polynucleotide kinase; 89.1 0.2 6.9E-06 52.8 3.4 22 192-213 3-24 (301)
456 2olj_A Amino acid ABC transpor 89.1 0.19 6.5E-06 51.5 3.1 23 192-214 51-73 (263)
457 1g6h_A High-affinity branched- 89.1 0.19 6.5E-06 51.5 3.1 23 192-214 34-56 (257)
458 2ged_A SR-beta, signal recogni 89.0 0.24 8.3E-06 48.0 3.7 25 190-214 47-71 (193)
459 4g1u_C Hemin import ATP-bindin 89.0 0.19 6.5E-06 51.7 3.0 23 192-214 38-60 (266)
460 2og2_A Putative signal recogni 89.0 0.22 7.5E-06 53.5 3.6 25 190-214 156-180 (359)
461 3exa_A TRNA delta(2)-isopenten 89.0 0.23 7.7E-06 51.7 3.5 24 191-214 3-26 (322)
462 2d2e_A SUFC protein; ABC-ATPas 88.9 0.21 7E-06 51.0 3.2 22 192-213 30-51 (250)
463 3j16_B RLI1P; ribosome recycli 88.9 3 0.0001 48.2 13.3 24 191-214 103-126 (608)
464 2ff7_A Alpha-hemolysin translo 88.8 0.2 6.9E-06 50.9 3.1 23 192-214 36-58 (247)
465 1vpl_A ABC transporter, ATP-bi 88.8 0.2 7E-06 51.1 3.1 23 192-214 42-64 (256)
466 2iw3_A Elongation factor 3A; a 88.7 2.8 9.6E-05 51.0 13.2 121 192-316 462-611 (986)
467 2zu0_C Probable ATP-dependent 88.7 0.22 7.4E-06 51.4 3.2 23 192-214 47-69 (267)
468 1a7j_A Phosphoribulokinase; tr 88.6 0.094 3.2E-06 54.9 0.4 24 190-213 4-27 (290)
469 1fx0_A ATP synthase alpha chai 88.6 0.41 1.4E-05 53.1 5.5 83 192-280 164-265 (507)
470 1oix_A RAS-related protein RAB 88.6 0.24 8.3E-06 48.1 3.3 25 190-214 28-52 (191)
471 2wji_A Ferrous iron transport 88.5 0.29 9.9E-06 46.1 3.8 23 192-214 4-26 (165)
472 2qi9_C Vitamin B12 import ATP- 88.5 0.22 7.5E-06 50.6 3.1 23 192-214 27-49 (249)
473 4eaq_A DTMP kinase, thymidylat 88.5 0.36 1.2E-05 48.4 4.6 25 190-214 25-49 (229)
474 2ixe_A Antigen peptide transpo 88.5 0.22 7.5E-06 51.4 3.1 23 192-214 46-68 (271)
475 2ghi_A Transport protein; mult 88.5 0.22 7.6E-06 51.1 3.1 23 192-214 47-69 (260)
476 3foz_A TRNA delta(2)-isopenten 88.5 0.27 9.4E-06 51.0 3.7 24 190-213 9-32 (316)
477 2eyu_A Twitching motility prot 88.4 0.26 9E-06 50.5 3.6 110 190-313 24-136 (261)
478 3dzd_A Transcriptional regulat 88.4 0.4 1.4E-05 52.1 5.2 131 164-309 129-272 (368)
479 3oaa_A ATP synthase subunit al 88.3 0.69 2.4E-05 51.1 6.9 83 192-280 163-264 (513)
480 2j9r_A Thymidine kinase; TK1, 88.3 0.67 2.3E-05 45.3 6.2 110 190-310 27-138 (214)
481 2yz2_A Putative ABC transporte 88.3 0.23 7.9E-06 51.1 3.1 23 192-214 34-56 (266)
482 2zej_A Dardarin, leucine-rich 88.3 0.23 7.8E-06 47.9 2.9 22 193-214 4-25 (184)
483 3vr4_A V-type sodium ATPase ca 88.2 1.1 3.8E-05 50.3 8.6 59 175-242 221-280 (600)
484 2ihy_A ABC transporter, ATP-bi 88.2 0.23 8E-06 51.4 3.1 23 192-214 48-70 (279)
485 2qmh_A HPR kinase/phosphorylas 88.2 0.26 8.9E-06 47.5 3.1 23 192-214 35-57 (205)
486 1xx6_A Thymidine kinase; NESG, 88.1 0.26 8.8E-06 47.7 3.1 110 190-310 7-118 (191)
487 2v9p_A Replication protein E1; 88.1 0.24 8.4E-06 51.7 3.1 24 190-213 125-148 (305)
488 1q3t_A Cytidylate kinase; nucl 88.1 0.24 8.3E-06 50.0 3.1 24 190-213 15-38 (236)
489 1nlf_A Regulatory protein REPA 88.0 0.26 9E-06 51.3 3.3 22 192-213 31-52 (279)
490 2vp4_A Deoxynucleoside kinase; 87.9 0.27 9.2E-06 49.4 3.3 24 190-213 19-42 (230)
491 1u0j_A DNA replication protein 87.8 0.41 1.4E-05 48.7 4.5 36 174-213 91-126 (267)
492 1svm_A Large T antigen; AAA+ f 87.8 0.25 8.4E-06 53.6 3.0 24 190-213 168-191 (377)
493 2ck3_A ATP synthase subunit al 87.7 0.65 2.2E-05 51.6 6.3 101 175-280 151-272 (510)
494 3end_A Light-independent proto 87.7 0.51 1.7E-05 49.8 5.4 44 189-234 39-82 (307)
495 2ocp_A DGK, deoxyguanosine kin 87.5 0.29 1E-05 49.6 3.3 23 191-213 2-24 (241)
496 2f9l_A RAB11B, member RAS onco 87.4 0.27 9.4E-06 48.0 2.9 24 191-214 5-28 (199)
497 3cmu_A Protein RECA, recombina 87.2 0.95 3.2E-05 59.1 8.3 85 190-281 382-472 (2050)
498 3qf4_A ABC transporter, ATP-bi 87.2 2.1 7.3E-05 49.6 10.7 23 192-214 370-392 (587)
499 3mfy_A V-type ATP synthase alp 87.2 0.84 2.9E-05 51.0 6.8 59 175-242 216-275 (588)
500 4edh_A DTMP kinase, thymidylat 87.2 0.75 2.5E-05 45.4 5.9 24 191-214 6-29 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-47 Score=450.97 Aligned_cols=317 Identities=16% Similarity=0.228 Sum_probs=256.4
Q ss_pred eecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC--CccccccccceEEEEecCCC--ChHHHHHHH
Q 001955 167 IGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN--DEDVKTHFNLRMWVCVSDIF--DVTTIVEKM 242 (991)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i 242 (991)
+||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 5999999999999975422 3679999999999999999999998 67899999999999999885 889999999
Q ss_pred HHHccCCCC-------cccCHHHHHHHHHhHhCCc-eeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHH
Q 001955 243 IRSATNRES-------EKLDLDQLQERLRGEIDGK-RYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 243 ~~~l~~~~~-------~~~~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~ 314 (991)
+.+++.... +..+.+++...+++.|+++ ||||||||||+.+...|.. .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999975421 2235677889999999996 9999999999864323432 17999999999999998
Q ss_pred HhC-CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHHhhhh
Q 001955 315 ITS-KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHFRDDE 393 (991)
Q Consensus 315 ~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~~~~~ 393 (991)
.++ ....|++++|+.++||+||.++||.... .+++.+++++|+++|+|+||||+++|+.|+.+ .. +|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 775 3357999999999999999999886532 36788899999999999999999999999766 33 233333333
Q ss_pred ccCCCCCccchhhhhhhhccCCChhhHHHHh-----------HhccCCCCceecHHHHHHHHHHc--CCCcCCCCCCChH
Q 001955 394 LSKVPQEESDILPKLKLSYDHLPSPLKQCFA-----------YCALFPKDYLIVKEQLVLLWMAQ--GFLGLSIDNQCPE 460 (991)
Q Consensus 394 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~ 460 (991)
.+... ...+.+++.+||++||.++|.||+ |||+||+++.|+ +++|+|+ ||+.........+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 33222 346899999999999999999999 999999999999 8899999 9998766346677
Q ss_pred hhHHHHHHHHHhcccccccccCCCCCEEEEEechhHHHHHHHhhcccce
Q 001955 461 DVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECA 509 (991)
Q Consensus 461 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~e~~ 509 (991)
++++ ||++|+++||++....+ ...+|+|||+||+||++++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8877 99999999999976543 334699999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.6e-39 Score=375.21 Aligned_cols=285 Identities=21% Similarity=0.233 Sum_probs=228.0
Q ss_pred eeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccc-eEEEEecCCCChHHHHHHHHH
Q 001955 166 IIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNL-RMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~ 244 (991)
.|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999998521 4689999999999999999999987788999986 899999999998888888777
Q ss_pred HccC---C---CC-----cccCHHHHHHHHHhHh---CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 245 SATN---R---ES-----EKLDLDQLQERLRGEI---DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 245 ~l~~---~---~~-----~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
.++. . .. ...+.+.+...+++.| .+||+||||||||+. +.|..+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 5431 1 00 1123455667777765 689999999999984 555543 2 799999999999
Q ss_pred HHHHHhCCCCceecC------CCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCC-Ch
Q 001955 311 RVARITSKLPFHALR------GLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNN-TE 383 (991)
Q Consensus 311 ~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~-~~ 383 (991)
.++..+.....|.++ +|+.+|||+||++.. +.. . .++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 988655443456677 999999999999984 221 1 1233444 9999999999999999885 57
Q ss_pred HHHHHHhhhhccCCCCCccchhhhhhhhccCCChhh-HHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHhh
Q 001955 384 TYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPL-KQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDV 462 (991)
Q Consensus 384 ~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 462 (991)
++|... ....+..++.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 788653 13469999999999999999 99999999999999999999999998876 235
Q ss_pred HHHHHHHHHhcccccccccCCCCCEEEEEechhHHHHHH
Q 001955 463 GHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAE 501 (991)
Q Consensus 463 ~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~ 501 (991)
++.++++|+++||++... ...+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 888999999999998732 1236999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-37 Score=404.25 Aligned_cols=311 Identities=19% Similarity=0.293 Sum_probs=247.1
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc-cccc-cceEEEEecCCCC--hHH
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV-KTHF-NLRMWVCVSDIFD--VTT 237 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~~ 237 (991)
.++.||||++++++|.++|..... ..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~----~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNG----EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTT----SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccC----CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 456799999999999999975533 6899999999999999999999997543 4445 6778999988543 344
Q ss_pred HHHHHHHHccCCC----CcccCHHHHHHHHHhHhCCc--eeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 238 IVEKMIRSATNRE----SEKLDLDQLQERLRGEIDGK--RYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 238 ~~~~i~~~l~~~~----~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
.+..++..+.... ....+.+++.+.++..+.++ |+||||||||+. ..|. ...+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHH
Confidence 4666777665432 23456788999999999887 999999999975 3332 2368999999999998
Q ss_pred HHHH-hCCCCceecCC-CChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHHH
Q 001955 312 VARI-TSKLPFHALRG-LPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLHF 389 (991)
Q Consensus 312 v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~~ 389 (991)
++.. +.....+++++ |++++|++||...++... +++.+++++|+++|+|+||||+++|++|+.+.. .|..+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--HHHHH
Confidence 8854 45556888986 999999999999885432 334567899999999999999999999988762 46655
Q ss_pred hhhhccCC----CC----CccchhhhhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChHh
Q 001955 390 RDDELSKV----PQ----EESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPED 461 (991)
Q Consensus 390 ~~~~~~~~----~~----~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 461 (991)
++...... .. ....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 54332211 11 113588999999999999999999999999999999999999999433 56
Q ss_pred hHHHHHHHHHhcccccccccCCCCCEEEEEechhHHHHHHHhhccc
Q 001955 462 VGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTE 507 (991)
Q Consensus 462 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~~e 507 (991)
.++.++++|+++||++.... +...+|+||++||+|++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999999986542 44567999999999999988766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=341.16 Aligned_cols=306 Identities=21% Similarity=0.324 Sum_probs=233.8
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc-cccc-cceEEEEecCCCChHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV-KTHF-NLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~ 240 (991)
++.||||+.++++|.++|.... .+.++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4569999999999999998543 26789999999999999999999997665 7889 58999999775 3333333
Q ss_pred HH---HHHccCC----CCcccCHHHHHHHHHhHhCC--ceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 241 KM---IRSATNR----ESEKLDLDQLQERLRGEIDG--KRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 241 ~i---~~~l~~~----~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
.+ +..++.. .....+.+.+...+...+.+ +++||||||||+. .. + . ...+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~---l-~---~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WV---L-K---AFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HH---H-H---TTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HH---H-H---HhcCCCeEEEECCCcH
Confidence 33 3344321 12345667788888888776 7899999999874 22 2 2 2357899999999998
Q ss_pred HHHHhCCCCceec---CCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHH
Q 001955 312 VARITSKLPFHAL---RGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLH 388 (991)
Q Consensus 312 v~~~~~~~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~ 388 (991)
++..+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||+++|+.++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 776543 234444 58999999999999986421 22345689999999999999999999998765 35766
Q ss_pred HhhhhccC----CC----CCccchhhhhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCCCCChH
Q 001955 389 FRDDELSK----VP----QEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPE 460 (991)
Q Consensus 389 ~~~~~~~~----~~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 460 (991)
++...... +. .....+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 55432211 11 1223688899999999999999999999999999999999999999432 3
Q ss_pred hhHHHHHHHHHhcccccccccCCCCCEEEEEechhHHHHHHHhhc
Q 001955 461 DVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAG 505 (991)
Q Consensus 461 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~Hdlv~~~a~~~~~ 505 (991)
+.+..++++|+++||++.... +...+|+||+++|++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 457889999999999985432 445679999999999998743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=8.8e-30 Score=313.05 Aligned_cols=415 Identities=19% Similarity=0.195 Sum_probs=200.4
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcc-ccCcc-ccCCCCccEEEccCCCCccccchhhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE-TVPSL-IGKLKHLRYFNLSHNADIKSLPDSVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~-~lp~~-~~~l~~L~~L~L~~~~~~~~lP~~i~~L~ 622 (991)
++|+.|.+.++..... .+..+.++++|++|+|++|.+. .+|.. +.++++|++|++++|.+.+.+|..+.++.
T Consensus 294 ~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp TTCSEEECCSSEEEEC------CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred CcCCEEECcCCcCCCc------cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 5555555555433221 2334455555555555555554 44443 55555555555555554445555555554
Q ss_pred -CCCEEeCCCCCCCccccccccc--cccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc-CCcccccCcccCCce
Q 001955 623 -NLQTLDLSCCDDLVELPRDIGK--MVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK-TQLSQLNGLNKLRGS 698 (991)
Q Consensus 623 -~L~~L~L~~~~~~~~lp~~i~~--L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~-~~~~~l~~l~~L~~~ 698 (991)
+|++|++++|...+.+|..+.. +++|++|++++|.....+|..++++++|++|++..+... .....+..+.+|+ .
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~ 446 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR-D 446 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC-E
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCC-E
Confidence 5555555555444445555444 555555555555444455555555555555555554433 2222333333333 3
Q ss_pred eEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCC-ccCcccccccccCce
Q 001955 699 LRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGI-RLSSWLSSVTNLTMI 777 (991)
Q Consensus 699 l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L 777 (991)
+.+....-. ......+..+++|+.|+++.+..... ....+..+++|+.|.+.++... .+|.|++.+++|+.|
T Consensus 447 L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 447 LKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGE------IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp EECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred EECCCCccc-CcCCHHHcCCCCceEEEecCCcccCc------CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 333322110 01111233344555555554432110 1112233455555555555443 445555555566666
Q ss_pred eeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccc---------------------
Q 001955 778 DISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPE--------------------- 835 (991)
Q Consensus 778 ~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~--------------------- 835 (991)
+|++|...+.+| .++.+++|++|++++ +.+.+.+|..+.....+..+.+.....
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~----N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNT----NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCS----SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCC----CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 666555554444 355555566665555 222222222221111111111000000
Q ss_pred --------ccccccc------CCCccccCCCCCC--CCccceeecccC------CCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 836 --------LKGWWRT------DGSTTQTAEPPFS--HPLQQTMMRTTN------TAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 836 --------L~~~~~~------~~~~~~~~~~~l~--~~~~~l~~~~~~------~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
+..+... .........+.+. ..++.+.++... ..+..+++|+.|++++|.-...+|.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~- 674 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD- 674 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-
Confidence 0000000 0000000000000 111222222222 2356788899999999854446665
Q ss_pred cCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC---cCeEEEecCcchh----hhhcCCCCC
Q 001955 894 MMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ---LQSLEIIQCPQLS----ERCGNNMAV 966 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~---L~~L~i~~c~~L~----~~~~~~~~~ 966 (991)
.++.+++|+.|++++|...+.+|..+..+++|+.|++++|+..+.+|...+ +..+.+.+||.|- ..|....+.
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~ 754 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccC
Confidence 578889999999999976678898899999999999999987788888765 4444455554432 378889999
Q ss_pred CCCCCCCCCeEE
Q 001955 967 DWPKIAHIPNIR 978 (991)
Q Consensus 967 ~~~~i~~i~~~~ 978 (991)
+|++|+|+|++.
T Consensus 755 ~~~~~~~~~~~~ 766 (768)
T 3rgz_A 755 GYAHHQRSHHHH 766 (768)
T ss_dssp ------------
T ss_pred CCCCCCCccccC
Confidence 999999999875
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2e-28 Score=297.82 Aligned_cols=340 Identities=16% Similarity=0.166 Sum_probs=224.5
Q ss_pred hhhhhccCCcccEEEccCCCccc------------------cCcccc--CCCCccEEEccCCCCccccchhhhcccCCCE
Q 001955 567 CNKIVSSFKCLRTLNLSNSEIET------------------VPSLIG--KLKHLRYFNLSHNADIKSLPDSVSRLLNLQT 626 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~~i~~------------------lp~~~~--~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 626 (991)
+|..+.++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 34567899999999999999998 899988 9999999999999988999999999999999
Q ss_pred EeCCCCC-CCc-cccccccccc-------cCcEEeeccccccCcCCc--CCCCCCCCCcCCccccCCcCCcccccCcccC
Q 001955 627 LDLSCCD-DLV-ELPRDIGKMV-------SLRHLAIESCLSLTDMPN--GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKL 695 (991)
Q Consensus 627 L~L~~~~-~~~-~lp~~i~~L~-------~L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L 695 (991)
|+|++|. ..+ .+|..+++++ +|++|++++|. +..+|. .++++++|++|++..+... .++.+..+.+|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence 9999987 444 6998888777 99999999994 558998 8999999999999887665 33355555544
Q ss_pred CceeEEcccCCchhhHhhhcccCCC-CCceEEEecCCCCccchhHhhhccCCCC--CCcceEEEeeeCCCcc-C---ccc
Q 001955 696 RGSLRIENLGEKQNSRLANLEAKEG-LQSLVLQWDANKTVIYIDDALLEGLKPH--QNLKELTIIRFGGIRL-S---SWL 768 (991)
Q Consensus 696 ~~~l~i~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~~--~~L~~L~l~~~~~~~l-p---~~l 768 (991)
+ .+.+.+..-. .....+..+++ |+.|+++.+... .+ ...+... ++|+.|.+.++..... | ..+
T Consensus 598 ~-~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~l------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 598 T-DLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YI------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp S-EEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SC------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred e-EEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cC------chhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 4 4444322211 11112334444 555555554321 00 0111111 2355555555443222 1 112
Q ss_pred c--cccccCceeeccccccccCCC--CCCCCccceeeccccccceeccCCCCCC--------CCCCCCccEEeecccccc
Q 001955 769 S--SVTNLTMIDISICIKCQYIPE--LDQLPSLKRLRLFKLSALEYISSSSPPS--------TTIFPSLEELRIFACPEL 836 (991)
Q Consensus 769 ~--~l~~L~~L~L~~~~~~~~lp~--l~~l~~L~~L~l~~~~~l~~i~~~~~~~--------~~~~~~L~~L~l~~~~~L 836 (991)
. .+++|+.|+|++|... .+|. +..+++|+.|++++ +.+. .++.. ..++++|+.|++++| .+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~----N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN----NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS----CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC----CcCC-ccChHHhccccccccccCCccEEECCCC-CC
Confidence 2 2335566666655443 3331 22455566666655 2222 11111 112235666666555 22
Q ss_pred ccccccCCCccccCCCCCCCCccceeecccCCCCC--CCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEec------
Q 001955 837 KGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEP--PFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIEL------ 908 (991)
Q Consensus 837 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~------ 908 (991)
..++ ..+. .+++|+.|++++| .++.+|. .+..+++|+.|+|++
T Consensus 741 ~~lp---------------------------~~l~~~~l~~L~~L~Ls~N-~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 741 TSLS---------------------------DDFRATTLPYLSNMDVSYN-CFSSFPT-QPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CCCC---------------------------GGGSTTTCTTCCEEECCSS-CCSSCCC-GGGGCTTCCEEECCCCBCTTC
T ss_pred ccch---------------------------HHhhhccCCCcCEEEeCCC-CCCccch-hhhcCCCCCEEECCCCCCccc
Confidence 2221 1233 7889999999998 6666776 466899999999977
Q ss_pred CCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC--cCeEEEecCcc
Q 001955 909 CPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ--LQSLEIIQCPQ 955 (991)
Q Consensus 909 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~--L~~L~i~~c~~ 955 (991)
|...+.+|..+.++++|+.|++++|+ ++.+|..+. |+.|++++||-
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCSCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCCCCC
Confidence 54567788888999999999999998 489998765 99999999864
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8.9e-27 Score=279.99 Aligned_cols=275 Identities=18% Similarity=0.123 Sum_probs=155.6
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~ 596 (991)
.+..++++.+ ..+......+..+.++++|++|.+.++..... .+..|.++++|++|+|++|.++.+ |..|++
T Consensus 30 ~~~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDL-SFNPLKILKSYSFSNFSELQWLDLSRCEIETI------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEEC-CCCCcCEeChhhccCCccCcEEeCCCCccccc------CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4456777777 44444443445677788888888777655432 245567788888888888888766 667888
Q ss_pred CCCccEEEccCCCCccccc-hhhhcccCCCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCCcCCCCCCCCC-
Q 001955 597 LKHLRYFNLSHNADIKSLP-DSVSRLLNLQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLR- 673 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~- 673 (991)
+++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+
T Consensus 103 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 103 LTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 8888888888887 44444 567888888888888865443 5677788888888888887744443455566665554
Q ss_pred ---cCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc--c-------------
Q 001955 674 ---TLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV--I------------- 735 (991)
Q Consensus 674 ---~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~------------- 735 (991)
+|++..+.............+|+ .+.+.+...........+..+.+++.+.+........ +
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred ccceeeccCCCcceeCcccccCceee-eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 46665554431111111111232 3333332221122222333444444444432211000 0
Q ss_pred ------------chhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeecc
Q 001955 736 ------------YIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLF 803 (991)
Q Consensus 736 ------------~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~ 803 (991)
.... ....+..+++|+.|.+.++....+| ++..+++|+.|++++|.. +.+|.+ .+++|+.|+++
T Consensus 261 l~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSD-DIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLT 336 (606)
T ss_dssp SEEEEEEECCCTTCCG-GGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEE
T ss_pred ccHhheeccccccccc-cccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeecc
Confidence 0000 0111333456666666666665555 555666666666666654 555555 56666666665
Q ss_pred cc
Q 001955 804 KL 805 (991)
Q Consensus 804 ~~ 805 (991)
++
T Consensus 337 ~n 338 (606)
T 3vq2_A 337 MN 338 (606)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=7.2e-28 Score=288.97 Aligned_cols=386 Identities=16% Similarity=0.181 Sum_probs=262.0
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCC------Cc----------------------------------
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSS------SD---------------------------------- 559 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~------~~---------------------------------- 559 (991)
.++.++.+ .+......+|..+.++++|++|.+.++.. ..
T Consensus 81 ~~V~~L~L-~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSL-EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEEC-TTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEe-cCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 46777777 55566667889999999999999988742 00
Q ss_pred ---------------------------------ccchhhHhhhhhccCCcccEEEccCCCccc-----------------
Q 001955 560 ---------------------------------RQLNESYCNKIVSSFKCLRTLNLSNSEIET----------------- 589 (991)
Q Consensus 560 ---------------------------------~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~----------------- 589 (991)
..+ ..++..++++++|++|+|++|.++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l--~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEE--EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCC--ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 000 0145567899999999999999998
Q ss_pred -cCcccc--CCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCC-CCc-ccccccccc------ccCcEEeeccccc
Q 001955 590 -VPSLIG--KLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCD-DLV-ELPRDIGKM------VSLRHLAIESCLS 658 (991)
Q Consensus 590 -lp~~~~--~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~-~~~-~lp~~i~~L------~~L~~L~l~~~~~ 658 (991)
+|+.++ ++++|++|+|++|.+.+.+|..++++++|++|++++|. ..+ .+|..++++ ++|++|++++| .
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-N 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-C
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-c
Confidence 999999 99999999999999889999999999999999999987 444 699999887 99999999999 4
Q ss_pred cCcCCc--CCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCC-CCceEEEecCCCCcc
Q 001955 659 LTDMPN--GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEG-LQSLVLQWDANKTVI 735 (991)
Q Consensus 659 ~~~lp~--~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 735 (991)
+..+|. .++++++|++|++..+.....++.+..+.+|+ .+.+.+..-. .....+..+++ |+.|+++.+... .
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~-~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~- 391 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA-SLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-Y- 391 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES-EEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-S-
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC-EEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-c-
Confidence 559998 89999999999998876652333555555554 4443322111 11122444455 666666655421 0
Q ss_pred chhHhhhccCCC--CCCcceEEEeeeCCCc-cCcccc-------cccccCceeeccccccccCCC--CCCCCccceeecc
Q 001955 736 YIDDALLEGLKP--HQNLKELTIIRFGGIR-LSSWLS-------SVTNLTMIDISICIKCQYIPE--LDQLPSLKRLRLF 803 (991)
Q Consensus 736 ~~~~~~l~~l~~--~~~L~~L~l~~~~~~~-lp~~l~-------~l~~L~~L~L~~~~~~~~lp~--l~~l~~L~~L~l~ 803 (991)
....+.. .++|+.|.+.++.... .|.++. .+++|+.|+|++|... .+|. +..+++|++|+++
T Consensus 392 -----lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 392 -----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp -----CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred -----cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence 0111111 2256666666554432 344444 4556666666666444 3442 3345666666666
Q ss_pred ccccceeccCCCCCCC--------CCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCC--CC
Q 001955 804 KLSALEYISSSSPPST--------TIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEP--PF 873 (991)
Q Consensus 804 ~~~~l~~i~~~~~~~~--------~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~l 873 (991)
+ +.+. .++... ..+++|+.|++++|. +..++ ..+. .+
T Consensus 466 ~----N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp---------------------------~~~~~~~l 512 (636)
T 4eco_A 466 G----NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS---------------------------DDFRATTL 512 (636)
T ss_dssp S----SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCC---------------------------GGGSTTTC
T ss_pred C----CCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccC---------------------------hhhhhccC
Confidence 6 3332 112111 112266666666652 22221 1233 78
Q ss_pred CccCeeeeccCCCCCCCCCccCCCCCCccEEEEec------CCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC--c
Q 001955 874 SKLKSLTIESIDDLETWPEEMMPNFPSIQNISIEL------CPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ--L 945 (991)
Q Consensus 874 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~--L 945 (991)
++|+.|++++| .++.+|. .+..+++|+.|++++ |...+.+|..+..+++|+.|++++|. ++.+|..+. |
T Consensus 513 ~~L~~L~Ls~N-~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~~~L 589 (636)
T 4eco_A 513 PYLVGIDLSYN-SFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKITPNI 589 (636)
T ss_dssp TTCCEEECCSS-CCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCTTC
T ss_pred CCcCEEECCCC-CCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHhCcC
Confidence 89999999998 5666776 466789999999954 54567788888889999999999988 488888765 9
Q ss_pred CeEEEecCcch
Q 001955 946 QSLEIIQCPQL 956 (991)
Q Consensus 946 ~~L~i~~c~~L 956 (991)
+.|++++||-.
T Consensus 590 ~~L~Ls~N~l~ 600 (636)
T 4eco_A 590 SVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECcCCCCc
Confidence 99999988643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.9e-26 Score=275.51 Aligned_cols=413 Identities=15% Similarity=0.055 Sum_probs=265.2
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~ 598 (991)
...+++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.+..+| ..+++++
T Consensus 56 ~~L~~L~L-s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 56 SELQWLDL-SRCEIETIEDKAWHGLHHLSNLILTGNPIQSF------SPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTCCCCCC------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCcEEeC-CCCcccccCHHHhhchhhcCEeECCCCccccc------ChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 45677777 44444444466788999999999988876543 3566789999999999999998876 6799999
Q ss_pred CccEEEccCCCCcc-ccchhhhcccCCCEEeCCCCCCCccccccccccccCc----EEeeccccccCcCCcCCCCCCCCC
Q 001955 599 HLRYFNLSHNADIK-SLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLR----HLAIESCLSLTDMPNGLGQLTNLR 673 (991)
Q Consensus 599 ~L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~----~L~l~~~~~~~~lp~~l~~L~~L~ 673 (991)
+|++|++++|.+.+ .+|..++++++|++|++++|......|..++.+.+|+ +|++++| .+..+|.......+|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-CcceeCcccccCceee
Confidence 99999999998443 6899999999999999999765555566677777665 7888887 4556665555555677
Q ss_pred cCCccccCCc----------------------------------------------------------CCcccccCcccC
Q 001955 674 TLPLFMVGRK----------------------------------------------------------TQLSQLNGLNKL 695 (991)
Q Consensus 674 ~L~l~~~~~~----------------------------------------------------------~~~~~l~~l~~L 695 (991)
.|++..+... ..+..+..+.++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 7766554321 000001112222
Q ss_pred CceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCcc----------chhHh-h--hccCCCCCCcceEEEeeeCCC
Q 001955 696 RGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVI----------YIDDA-L--LEGLKPHQNLKELTIIRFGGI 762 (991)
Q Consensus 696 ~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------~~~~~-~--l~~l~~~~~L~~L~l~~~~~~ 762 (991)
+ .+.+.+.... ....+..+.+|+.|+++.+.....- ....+ . ...+..+++|+.|.+.++...
T Consensus 288 ~-~L~l~~~~~~---~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 288 S-AMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp S-EEEEESCCCC---CCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred C-EEEecCccch---hhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 2 2222211110 0112334445555555554321000 00000 0 002223456666666655443
Q ss_pred cc---CcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCC-CCCCCCCCccEEeecccccccc
Q 001955 763 RL---SSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSP-PSTTIFPSLEELRIFACPELKG 838 (991)
Q Consensus 763 ~l---p~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~~L~~L~l~~~~~L~~ 838 (991)
.. |..+..+++|+.|++++|......+.+..+++|+.|++++ +.+....+ ..+..+++|+.|++++|.-...
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH----STLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTT----SEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCC----CccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 33 4555677777777777776544344677777888888877 44444433 4556778888888877743221
Q ss_pred ccccCCCccccCCCCCC-CCccceeecc--cCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcc
Q 001955 839 WWRTDGSTTQTAEPPFS-HPLQQTMMRT--TNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISL 915 (991)
Q Consensus 839 ~~~~~~~~~~~~~~~l~-~~~~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 915 (991)
.+ .....++.+. +.+....+.. ....+..+++|+.|++++| .++.++...+..+++|++|++++|+.....
T Consensus 440 ~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 440 FD-----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp CT-----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred ch-----hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 11 1122334444 3332222222 3345678899999999999 677776667889999999999999555555
Q ss_pred cccCCCCCCCCeEeeecCCCCCcCCCCCC-----cCeEEEecCcc
Q 001955 916 PQRLNKATTLKTVGIYDCPNMAILPEGLQ-----LQSLEIIQCPQ 955 (991)
Q Consensus 916 p~~l~~l~~L~~L~l~~c~~l~~lp~~~~-----L~~L~i~~c~~ 955 (991)
|..+..+++|+.|++++|+ +..+|..+. |+.|++.++|-
T Consensus 514 ~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp GGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred HHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 8889999999999999998 788888642 89999988754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.2e-27 Score=289.24 Aligned_cols=205 Identities=15% Similarity=0.049 Sum_probs=143.6
Q ss_pred CCCCCcceEEEeeeCCC-ccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCC
Q 001955 746 KPHQNLKELTIIRFGGI-RLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFP 823 (991)
Q Consensus 746 ~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 823 (991)
..+++|+.|.+.++... .+|.++..+++|+.|+|++|...+.+| .++.+++|++|++++ +.+.+..+..+..++
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~----N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN----NSFSGNIPAELGDCR 538 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS----SCCEEECCGGGGGCT
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC----CcccCcCCHHHcCCC
Confidence 34567888888777665 567778888888888888887776666 577888888888888 455555666677888
Q ss_pred CccEEeeccccccccccccCCCccc--------------------cCCCCCC---------CC-------------cc-c
Q 001955 824 SLEELRIFACPELKGWWRTDGSTTQ--------------------TAEPPFS---------HP-------------LQ-Q 860 (991)
Q Consensus 824 ~L~~L~l~~~~~L~~~~~~~~~~~~--------------------~~~~~l~---------~~-------------~~-~ 860 (991)
+|+.|++++|+-...++........ ..+.... .| +. .
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 8888888887544333321110000 0000000 00 00 0
Q ss_pred eeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCC
Q 001955 861 TMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILP 940 (991)
Q Consensus 861 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 940 (991)
...+.....+..+++|+.|++++|.-...+|. .++++++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 11111222456789999999999954456665 68899999999999997777999999999999999999999777899
Q ss_pred CCCC----cCeEEEecCcc
Q 001955 941 EGLQ----LQSLEIIQCPQ 955 (991)
Q Consensus 941 ~~~~----L~~L~i~~c~~ 955 (991)
..+. |+.|++++|+-
T Consensus 698 ~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGGGCCCCSEEECCSSEE
T ss_pred hHHhCCCCCCEEECcCCcc
Confidence 8765 99999999853
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=267.04 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=109.2
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~ 596 (991)
.+..++++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.++.+| ..|++
T Consensus 26 l~~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 26 LPFSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCSSCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCcc------CcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 4456777777 44444433455677888888888887755432 2455678888888888888887664 57888
Q ss_pred CCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCCcCCCCCCCC--
Q 001955 597 LKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNL-- 672 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L-- 672 (991)
+++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 8888888888887 666654 57888888888888865433 468888888888888888874433344556666666
Q ss_pred --CcCCccccCC
Q 001955 673 --RTLPLFMVGR 682 (991)
Q Consensus 673 --~~L~l~~~~~ 682 (991)
+.|++..+..
T Consensus 178 ~~~~L~l~~n~l 189 (570)
T 2z63_A 178 LNLSLDLSLNPM 189 (570)
T ss_dssp CCCEEECTTCCC
T ss_pred hhhhcccCCCCc
Confidence 5566655543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.7e-26 Score=278.02 Aligned_cols=352 Identities=18% Similarity=0.195 Sum_probs=259.2
Q ss_pred chhhhhcCCCCcEEEecccCCCcccch-----------hhHhhhhhc--cCCcccEEEccCCCcc-ccCccccCCCCccE
Q 001955 537 FPTALLRAKNLRTFLSTVYSSSDRQLN-----------ESYCNKIVS--SFKCLRTLNLSNSEIE-TVPSLIGKLKHLRY 602 (991)
Q Consensus 537 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~ 602 (991)
+|..+.++++|+.|.+..+......+. ...++..+. ++++|++|+|++|.+. .+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 577899999999999998876651000 001344444 9999999999999865 78999999999999
Q ss_pred EEccCCC-Ccc-ccchhhhccc-------CCCEEeCCCCCCCccccc--cccccccCcEEeeccccccCcCCcCCCCCCC
Q 001955 603 FNLSHNA-DIK-SLPDSVSRLL-------NLQTLDLSCCDDLVELPR--DIGKMVSLRHLAIESCLSLTDMPNGLGQLTN 671 (991)
Q Consensus 603 L~L~~~~-~~~-~lP~~i~~L~-------~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~ 671 (991)
|+|++|. +.+ .+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCc
Confidence 9999997 666 7999888887 99999999976 459998 89999999999999995 55888 8999999
Q ss_pred CCcCCccccCCcCCcccccCccc-CCceeEEcccCCchhhHhhhcccC--CCCCceEEEecCCCCccchhHhhhccCC--
Q 001955 672 LRTLPLFMVGRKTQLSQLNGLNK-LRGSLRIENLGEKQNSRLANLEAK--EGLQSLVLQWDANKTVIYIDDALLEGLK-- 746 (991)
Q Consensus 672 L~~L~l~~~~~~~~~~~l~~l~~-L~~~l~i~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~l~-- 746 (991)
|+.|++..+........+..+.+ |+ .+.+.+..-.. ....+... .+|+.|+++++....... .....+.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~-~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip---~l~~~l~~~ 670 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVE-GLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGR---NISCSMDDY 670 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCC-EEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSS---SCSSCTTTC
T ss_pred ceEEECcCCccccchHHHhhccccCC-EEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccc---cchhhhccc
Confidence 99999988877644445666666 66 56555432111 11122222 348888888775321100 0001111
Q ss_pred CCCCcceEEEeeeCCCccCcccc-cccccCceeeccccccccCCC-C--------CCCCccceeeccccccceeccCCCC
Q 001955 747 PHQNLKELTIIRFGGIRLSSWLS-SVTNLTMIDISICIKCQYIPE-L--------DQLPSLKRLRLFKLSALEYISSSSP 816 (991)
Q Consensus 747 ~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~-l--------~~l~~L~~L~l~~~~~l~~i~~~~~ 816 (991)
..++|+.|.+.++....+|.++. .+++|+.|+|++|... .+|. + .++++|+.|+|++ +.+. .++
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~----N~L~-~lp 744 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF----NKLT-SLS 744 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS----SCCC-CCC
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC----CCCc-cch
Confidence 23589999999999889998776 7999999999999765 5552 2 2345999999999 4444 445
Q ss_pred CCCC--CCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCC------CCC
Q 001955 817 PSTT--IFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESID------DLE 888 (991)
Q Consensus 817 ~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~------~l~ 888 (991)
..+. .+++|+.|++++|. +..++. .+..+++|+.|++++|+ ...
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~lp~---------------------------~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSSFPT---------------------------QPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSSCCC---------------------------GGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred HHhhhccCCCcCEEEeCCCC-CCccch---------------------------hhhcCCCCCEEECCCCCCcccccccc
Confidence 5555 89999999999883 222211 24578999999998732 344
Q ss_pred CCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCC
Q 001955 889 TWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPN 935 (991)
Q Consensus 889 ~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 935 (991)
.+|. .+.++++|+.|+|++| .++.+|..+. ++|+.|+|++|+.
T Consensus 797 ~ip~-~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 797 QWPT-GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCCT-TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred cChH-HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 5554 5788999999999999 5599998765 7999999999994
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.3e-26 Score=275.87 Aligned_cols=371 Identities=16% Similarity=0.195 Sum_probs=267.0
Q ss_pred chhhhhcCCCCcEEEecccCCCcccch-----------hhHhhhhhc--cCCcccEEEccCCCcc-ccCccccCCCCccE
Q 001955 537 FPTALLRAKNLRTFLSTVYSSSDRQLN-----------ESYCNKIVS--SFKCLRTLNLSNSEIE-TVPSLIGKLKHLRY 602 (991)
Q Consensus 537 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~L~~L~L~~~~i~-~lp~~~~~l~~L~~ 602 (991)
+|..+.++++|++|.+..+........ .+.++..+. ++++|++|+|++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 477788999999999988876542000 001344556 8999999999999866 67888999999999
Q ss_pred EEccCCC-Ccc-ccchhhhcc------cCCCEEeCCCCCCCccccc--cccccccCcEEeeccccccCcCCcCCCCCCCC
Q 001955 603 FNLSHNA-DIK-SLPDSVSRL------LNLQTLDLSCCDDLVELPR--DIGKMVSLRHLAIESCLSLTDMPNGLGQLTNL 672 (991)
Q Consensus 603 L~L~~~~-~~~-~lP~~i~~L------~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L 672 (991)
|++++|. +.+ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999997 666 799988887 899999999965 458998 89999999999999986555888 88899999
Q ss_pred CcCCccccCCcCCcccccCccc-CCceeEEcccCCchhhHhhhccc--CCCCCceEEEecCCCCccchhHhhhccCC---
Q 001955 673 RTLPLFMVGRKTQLSQLNGLNK-LRGSLRIENLGEKQNSRLANLEA--KEGLQSLVLQWDANKTVIYIDDALLEGLK--- 746 (991)
Q Consensus 673 ~~L~l~~~~~~~~~~~l~~l~~-L~~~l~i~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~l~--- 746 (991)
++|++..+........+..+.+ |+ .+.+.+..-.. ....+.. +.+|+.|+++.+.... .....+.
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~-~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~~~ 426 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVE-NLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGS------VDGKNFDPLD 426 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCC-EEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTT------TTTCSSCTTC
T ss_pred CEEECCCCccccccHhhhhhcccCc-EEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCC------cchhhhcccc
Confidence 9999887766544444555555 55 55554332111 0111222 3378888888765321 1112233
Q ss_pred ----CCCCcceEEEeeeCCCccCcccc-cccccCceeeccccccccCCC-C--------CCCCccceeeccccccceecc
Q 001955 747 ----PHQNLKELTIIRFGGIRLSSWLS-SVTNLTMIDISICIKCQYIPE-L--------DQLPSLKRLRLFKLSALEYIS 812 (991)
Q Consensus 747 ----~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~lp~-l--------~~l~~L~~L~l~~~~~l~~i~ 812 (991)
...+|+.|.+.++....+|..+. .+++|+.|+|++|... .+|. . .++++|+.|++++ +.+.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~----N~l~ 501 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF----NKLT 501 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS----SCCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC----CcCC
Confidence 34689999999998888887765 5999999999999766 5552 2 2234999999998 4554
Q ss_pred CCCCCCCC--CCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeecc------C
Q 001955 813 SSSPPSTT--IFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIES------I 884 (991)
Q Consensus 813 ~~~~~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~------~ 884 (991)
.++..+. .+++|+.|++++|. +..++. .+..+++|+.|++++ +
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~---------------------------~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNS-FSKFPT---------------------------QPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSC-CSSCCC---------------------------GGGGCSSCCEEECCSCBCTTCC
T ss_pred -ccChhhhhccCCCcCEEECCCCC-CCCcCh---------------------------hhhcCCCCCEEECCCCcccccC
Confidence 4555555 89999999999983 222211 245789999999965 4
Q ss_pred CCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC-------------cCeEEEe
Q 001955 885 DDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ-------------LQSLEII 951 (991)
Q Consensus 885 ~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~-------------L~~L~i~ 951 (991)
.....+|. .+..+++|+.|++++| .++.+|..+. ++|+.|++++|+ +..++.... .+..+|.
T Consensus 553 ~l~~~~p~-~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 627 (636)
T 4eco_A 553 RTLREWPE-GITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIR 627 (636)
T ss_dssp BCCCCCCT-TGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEE
T ss_pred cccccChH-HHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccC
Confidence 33455665 5778999999999999 5699998765 899999999998 443332111 4566888
Q ss_pred cCcchh
Q 001955 952 QCPQLS 957 (991)
Q Consensus 952 ~c~~L~ 957 (991)
+||.|.
T Consensus 628 ~C~~L~ 633 (636)
T 4eco_A 628 GCDALD 633 (636)
T ss_dssp SCGGGC
T ss_pred CCcccc
Confidence 898774
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=5.1e-25 Score=273.58 Aligned_cols=417 Identities=16% Similarity=0.139 Sum_probs=237.3
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~ 596 (991)
.+..++++.+ ..+......+..+..+++|++|.+.++...... .+..|.++++|++|+|++|.+..+ |..|++
T Consensus 22 lp~~l~~LdL-s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLL-SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEE-ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEEC-CCCcCCccChhHCcccccCeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 5677888888 555555445677889999999999887443321 255678999999999999999866 788999
Q ss_pred CCCccEEEccCCCCccccchh--hhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeeccccccCcCCcCCCCC--CC
Q 001955 597 LKHLRYFNLSHNADIKSLPDS--VSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIESCLSLTDMPNGLGQL--TN 671 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L--~~ 671 (991)
+++|++|+|++|.+.+.+|.. ++++++|++|+|++|...+..| ..+++|++|++|++++|......|..++.+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 999999999999855556765 8899999999999976544433 568999999999999886555556666655 67
Q ss_pred CCcCCccccCCcCC-cccccCccc------CCceeEEcccC--C---------------------------------chh
Q 001955 672 LRTLPLFMVGRKTQ-LSQLNGLNK------LRGSLRIENLG--E---------------------------------KQN 709 (991)
Q Consensus 672 L~~L~l~~~~~~~~-~~~l~~l~~------L~~~l~i~~~~--~---------------------------------~~~ 709 (991)
|+.|++..+..... ...+..+.+ |+ .+.+.+.. . ...
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred cceEECCCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 77777665544311 111111110 11 22221110 0 000
Q ss_pred hHhhhccc--CCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccc
Q 001955 710 SRLANLEA--KEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQ 786 (991)
Q Consensus 710 ~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~ 786 (991)
.....+.. ..+|+.|+++.+.... .....+..+++|+.|.+.++....+ |..+..+++|+.|+|++|....
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFS------LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCE------ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred CChhhhhccccCCccEEECCCCcccc------cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 00001111 1344555544432110 0111223345566666655554443 3345556666666666664433
Q ss_pred cCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeecccc--------ccccccccCCCcc----------
Q 001955 787 YIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACP--------ELKGWWRTDGSTT---------- 847 (991)
Q Consensus 787 ~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~--------~L~~~~~~~~~~~---------- 847 (991)
..| .+..+++|++|++++ +.+....+..+..+++|+.|++++|. +|+.+........
T Consensus 329 ~~~~~~~~l~~L~~L~L~~----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQK----NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp CCSCSCSSCTTCCEEECCS----CCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred cCHHHhcCCCCCCEEECCC----CCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccc
Confidence 323 455556666666655 33333333334445555555555432 1111110000000
Q ss_pred -----------------ccCCCCCC---------------------CCccceeecccC-----------CCCCCCCccCe
Q 001955 848 -----------------QTAEPPFS---------------------HPLQQTMMRTTN-----------TAEPPFSKLKS 878 (991)
Q Consensus 848 -----------------~~~~~~l~---------------------~~~~~l~~~~~~-----------~~~~~l~~L~~ 878 (991)
...++.+. ..++.+.+..+. ..+..+++|+.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 00111111 011222222211 12445677777
Q ss_pred eeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC-cCeEEEecCc
Q 001955 879 LTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ-LQSLEIIQCP 954 (991)
Q Consensus 879 L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~-L~~L~i~~c~ 954 (991)
|++++| .++.++...+..+++|+.|+|++| .++.+|..... ++|+.|++++|......|..+. |+.|++.++|
T Consensus 485 L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 485 LYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp CCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred EECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCC
Confidence 777777 666777666777888888888888 66666654433 7888888888875444454444 8888887644
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.3e-25 Score=267.76 Aligned_cols=407 Identities=15% Similarity=0.125 Sum_probs=219.3
Q ss_pred ceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCC
Q 001955 521 RTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKH 599 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~ 599 (991)
..+++.+ ..+......+..+..+++|++|.+.++..... .+..+.++++|++|+|++|.+..++ +.+..+++
T Consensus 82 ~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 82 RLDTLVL-TANPLIFMAETALSGPKALKHLFFIQTGISSI------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp TCCEEEC-TTCCCSEECTTTTSSCTTCCEEECTTSCCSCG------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred ccCeeeC-CCCcccccChhhhcccccccEeeccccCcccC------CcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 3445554 33333333344556666666666665544331 1233566666777777776666542 23333667
Q ss_pred ccEEEccCCCCccccchhhhcccCCC--EEeCCCCCCCccccccccccc-------------------------------
Q 001955 600 LRYFNLSHNADIKSLPDSVSRLLNLQ--TLDLSCCDDLVELPRDIGKMV------------------------------- 646 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~i~~L~~L~--~L~L~~~~~~~~lp~~i~~L~------------------------------- 646 (991)
|++|++++|.+.+..|..++.+++|+ .|++++|...+..|..+ ...
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccccccCCchhHHHHhhhccccchhheech
Confidence 77777777663333355566666666 66666654322222111 111
Q ss_pred ---------------------cCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEccc
Q 001955 647 ---------------------SLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENL 704 (991)
Q Consensus 647 ---------------------~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~ 704 (991)
+|+.|++++|. +..+| ..++.+++|++|++..+........+..+.+|+ .+.+.+.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~-~L~l~~n 311 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLK-KLVLSAN 311 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCC-EEECTTC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCC-EEECccC
Confidence 34444444442 22333 336666777777776665553334445555555 4544432
Q ss_pred CCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc---CcccccccccCceeecc
Q 001955 705 GEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL---SSWLSSVTNLTMIDISI 781 (991)
Q Consensus 705 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~ 781 (991)
.-. ......+..+++|+.|+++.+.....+. ...+..+++|+.|.+.++..... |..+..+++|+.|++++
T Consensus 312 ~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 312 KFE-NLCQISASNFPSLTHLSIKGNTKRLELG-----TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp CCS-BGGGGCGGGCTTCSEEECCSCSSCCBCC-----SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred CcC-cCchhhhhccCcCCEEECCCCCcccccc-----hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 211 1112334455666666666553210000 01133345666666665544433 34455666666666666
Q ss_pred ccccccCC-CCCCCCccceeeccccccceeccCCCC-CCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCc
Q 001955 782 CIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSP-PSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPL 858 (991)
Q Consensus 782 ~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~ 858 (991)
|......| .+..+++|++|++++ +.+....+ ..+..+++|+.|++++|.- .... ......++.+. +.+
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~----~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAF----TRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISS----EQLFDGLPALQHLNL 456 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTT----CCEECCTTCCTTTTCTTCCEEECTTCCC-BTTC----TTTTTTCTTCCEEEC
T ss_pred CcCCcCCHHHhcCCccCCeEECCC----CcCCCcccchhhhCcccCCEEECCCCcc-CCcC----HHHHhCCCCCCEEEC
Confidence 65444333 355566666666665 33322222 2244556666666665521 1110 00111222222 111
Q ss_pred cceeecc----cCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 859 QQTMMRT----TNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 859 ~~l~~~~----~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
....+.. ....+..+++|+.|++++| .++.++...+..+++|+.|++++|......|..+.++++| .|++++|.
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 1111110 0113567899999999999 6777766678999999999999996666677889999999 99999998
Q ss_pred CCCcCCCC-CC----cCeEEEecCcc
Q 001955 935 NMAILPEG-LQ----LQSLEIIQCPQ 955 (991)
Q Consensus 935 ~l~~lp~~-~~----L~~L~i~~c~~ 955 (991)
+..+|.. +. |+.|++.+||-
T Consensus 535 -l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 535 -ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp -CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred -ccccCHhhcccCCCCCEEeCCCCCc
Confidence 5555543 22 99999998763
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.7e-25 Score=267.09 Aligned_cols=441 Identities=14% Similarity=0.007 Sum_probs=256.7
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~ 596 (991)
++..++++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.+..+ |..|++
T Consensus 31 l~~~l~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 31 LPNSTECLEF-SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI------HEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCTTCCEEEC-TTCCCSEECTTTSTTCTTCSEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCcCcEEEc-cCCccCcCChhHhccCccceEEECCCCcccee------ChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4556777777 44444444456677788888888777655432 245567778888888888877755 567778
Q ss_pred CCCccEEEccCCCCcccc-chhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCC--
Q 001955 597 LKHLRYFNLSHNADIKSL-PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLR-- 673 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~-- 673 (991)
+++|++|++++|. +..+ |..++++++|++|++++|.....-+..+..+++|++|++++|......|..++.+++|+
T Consensus 104 l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 8888888888877 4444 56677788888888887653331212333477888888877744333345567777777
Q ss_pred cCCccccCCcCCcccccCcccCCceeEEcccCCch----------------------------hhHhhhcccCCCCCceE
Q 001955 674 TLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQ----------------------------NSRLANLEAKEGLQSLV 725 (991)
Q Consensus 674 ~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~----------------------------~~~~~~l~~~~~L~~L~ 725 (991)
.|++..+.........-....++ .+.+.+..... ...+..+.. ..++.|+
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~ 260 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQ-SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESIN 260 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEE-EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEE
T ss_pred EEecCCCccCccChhHhhhcccc-ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-CceeEEE
Confidence 55555554432111111111222 22222221111 000000100 0233333
Q ss_pred EEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccc
Q 001955 726 LQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFK 804 (991)
Q Consensus 726 l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~ 804 (991)
++.+.... .....+..+++|+.|.+.++....+|.++..+++|++|++++|......| .+..+++|++|++++
T Consensus 261 l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 261 LQKHYFFN------ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp CTTCCCSS------CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eecCccCc------cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 33322100 00111334577888888888777888888888888888888886655544 577788888888887
Q ss_pred cccceeccCCCC-CCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCccceeec-ccCCCCCCCCccCeeee
Q 001955 805 LSALEYISSSSP-PSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPLQQTMMR-TTNTAEPPFSKLKSLTI 881 (991)
Q Consensus 805 ~~~l~~i~~~~~-~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~~~l~~~-~~~~~~~~l~~L~~L~l 881 (991)
+ .+....+ ..+..+++|+.|++++|.- ...... ......++.+. +.+....+. .....+..+++|+.|++
T Consensus 335 n----~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 335 N----TKRLELGTGCLENLENLRELDLSHDDI-ETSDCC--NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp C----SSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEES--TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred C----CcccccchhhhhccCcCCEEECCCCcc-ccccCc--chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 3 3332222 3356788888888887732 221100 01122333333 222111111 11224567788888888
Q ss_pred ccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCc-CCC--CC----CcCeEEEecCc
Q 001955 882 ESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAI-LPE--GL----QLQSLEIIQCP 954 (991)
Q Consensus 882 ~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~--~~----~L~~L~i~~c~ 954 (991)
++|......+...+..+++|+.|++++|......|..+..+++|++|++++|+.-.. +|. .+ .|+.|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 888443344444577888899999998855455567788888999999988874321 221 12 28888888874
Q ss_pred chhhhhcCCCCCCCCCCCCCCeEEEcCccccc
Q 001955 955 QLSERCGNNMAVDWPKIAHIPNIRIDNDLIQL 986 (991)
Q Consensus 955 ~L~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 986 (991)
++.. ....+....++..+.+.++.+..
T Consensus 488 -l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 488 -LSSI----DQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp -CCEE----CTTTTTTCTTCCEEECCSSCCCG
T ss_pred -cCcc----ChhhhccccCCCEEECCCCccCc
Confidence 2221 12234556778888888776653
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.1e-24 Score=265.34 Aligned_cols=416 Identities=14% Similarity=0.118 Sum_probs=234.7
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~ 596 (991)
.+..++++.+ ..+......+..+.++++|++|.+..+..... .+..+.++++|++|+|++|.++.+|. .|++
T Consensus 23 ~~~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 23 LPTNITVLNL-THNQLRRLPAANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCTTCSEEEC-CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCcEEEC-CCCCCCCcCHHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 4567888888 45554444456688999999999988765543 35667889999999999999998876 5999
Q ss_pred CCCccEEEccCCCCccccc-hhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCc-CC--CCCCCC
Q 001955 597 LKHLRYFNLSHNADIKSLP-DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPN-GL--GQLTNL 672 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l--~~L~~L 672 (991)
+++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..+++|
T Consensus 96 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 96 CTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp CTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred CCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 9999999999998 55555 678999999999999987666677778999999999999984 444443 33 356889
Q ss_pred CcCCccccCCcC-CcccccCcccCCceeEEcccCCchhh--HhhhcccCCCCCceEEEecCCCC---------------c
Q 001955 673 RTLPLFMVGRKT-QLSQLNGLNKLRGSLRIENLGEKQNS--RLANLEAKEGLQSLVLQWDANKT---------------V 734 (991)
Q Consensus 673 ~~L~l~~~~~~~-~~~~l~~l~~L~~~l~i~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~---------------~ 734 (991)
++|++..+.... ....+..+.++. .+.+......... .........+|+.|+++++.... .
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred cEEECCCCcccccChhhhhhhhhhh-hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 999988775542 222233343333 3333322211100 00000122445555554432110 0
Q ss_pred cchhHhhh-----ccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccc-----cCC-----CCCCCCccc
Q 001955 735 IYIDDALL-----EGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQ-----YIP-----ELDQLPSLK 798 (991)
Q Consensus 735 ~~~~~~~l-----~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-----~lp-----~l~~l~~L~ 798 (991)
++.+.+.+ ..+..+++|+.|.+.++....+ |.++..+++|+.|++++|.... .+| .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 00011111 1122334555555555443332 3344555555555555443221 122 344556666
Q ss_pred eeeccccccceeccCCCCCCCCCCCCccEEeecccc-----------------ccccccccCCCc------cccCCCCCC
Q 001955 799 RLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACP-----------------ELKGWWRTDGST------TQTAEPPFS 855 (991)
Q Consensus 799 ~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~-----------------~L~~~~~~~~~~------~~~~~~~l~ 855 (991)
+|++++ +.+....+..+..+++|++|++++|. .|+.+....... ....++.+
T Consensus 333 ~L~l~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L- 407 (680)
T 1ziw_A 333 HLNMED----NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL- 407 (680)
T ss_dssp EEECCS----CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC-
T ss_pred EEECCC----CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC-
Confidence 666665 44444444455667777777777653 111111111000 01112221
Q ss_pred CCccceeecccC-------CCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCC--CCcccccCCCCCCCC
Q 001955 856 HPLQQTMMRTTN-------TAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPK--LISLPQRLNKATTLK 926 (991)
Q Consensus 856 ~~~~~l~~~~~~-------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~--l~~lp~~l~~l~~L~ 926 (991)
+.+.+..+. ..+..+++|++|++++| .+..++...+..+++|+.|++++|.. +..+|..+..+++|+
T Consensus 408 ---~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 408 ---EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp ---CEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred ---CEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 222222111 12345566666666666 34444444455556666666665532 234566666677777
Q ss_pred eEeeecCCCCCcCCCCC-C----cCeEEEecC
Q 001955 927 TVGIYDCPNMAILPEGL-Q----LQSLEIIQC 953 (991)
Q Consensus 927 ~L~l~~c~~l~~lp~~~-~----L~~L~i~~c 953 (991)
.|++++|. +..+|... . |+.|++++|
T Consensus 484 ~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 484 ILDLSNNN-IANINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCC-CCcCChhhhccccccCEEeCCCC
Confidence 77777765 45555432 1 666666665
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=259.05 Aligned_cols=402 Identities=16% Similarity=0.143 Sum_probs=193.1
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKH 599 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 599 (991)
..++++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.++.+|.. .+++
T Consensus 21 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQYL------DISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE------EGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEEC-CCCcccccChhhccccccccEEecCCCccCCc------ChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 45556655 33333333344566666666666666554332 234556666666666666666666554 5666
Q ss_pred ccEEEccCCCCcc-ccchhhhcccCCCEEeCCCCCCCccccccccccccC--cEEeeccccc--cCcCCcCCCC------
Q 001955 600 LRYFNLSHNADIK-SLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSL--RHLAIESCLS--LTDMPNGLGQ------ 668 (991)
Q Consensus 600 L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~--~~~lp~~l~~------ 668 (991)
|++|++++|.+.+ .+|..++++++|++|++++|.... ..+..+++| ++|++++|.. ....|..+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 6666666666332 355666666666666666644322 234555555 6666666644 3344444433
Q ss_pred --------------------CCCCCcCCccccC-------CcCCcccccCcccCCceeEEcccCCchh--hHhhhcccCC
Q 001955 669 --------------------LTNLRTLPLFMVG-------RKTQLSQLNGLNKLRGSLRIENLGEKQN--SRLANLEAKE 719 (991)
Q Consensus 669 --------------------L~~L~~L~l~~~~-------~~~~~~~l~~l~~L~~~l~i~~~~~~~~--~~~~~l~~~~ 719 (991)
+++|+.|++..+. ....+..+..+.+++ .+.+....-... ..........
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC-EEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh-hccccccccCHHHHHHHHHHhhhC
Confidence 2233333332221 001111122222222 222211110000 0000000122
Q ss_pred CCCceEEEecCCCCccchhHhhhccC-----CCCCCcceEEEeeeCCCccC-cccccc---cccCceeeccccccccCCC
Q 001955 720 GLQSLVLQWDANKTVIYIDDALLEGL-----KPHQNLKELTIIRFGGIRLS-SWLSSV---TNLTMIDISICIKCQYIPE 790 (991)
Q Consensus 720 ~L~~L~l~~~~~~~~~~~~~~~l~~l-----~~~~~L~~L~l~~~~~~~lp-~~l~~l---~~L~~L~L~~~~~~~~lp~ 790 (991)
+|+.|+++.+... +.....+ ...++|+.+.+.++.. .+| .++..+ .+|+.|++++|... ..+.
T Consensus 248 ~L~~L~l~~n~l~------~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~ 319 (520)
T 2z7x_B 248 TVWYFSISNVKLQ------GQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC 319 (520)
T ss_dssp SCSEEEEEEEEEE------SCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC
T ss_pred cccEEEeeccccc------CccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc-cccc
Confidence 4444444433210 0001111 2233444444444333 344 233322 44566666655432 2222
Q ss_pred CCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCccceeecc-cC-
Q 001955 791 LDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPLQQTMMRT-TN- 867 (991)
Q Consensus 791 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~-~~- 867 (991)
...+++|++|++++ +.+....+..+..+++|+.|++++|. +..+.... .....++.+. +.+....+.. ..
T Consensus 320 ~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 320 PSKISPFLHLDFSN----NLLTDTVFENCGHLTELETLILQMNQ-LKELSKIA--EMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CSSCCCCCEEECCS----SCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHH--HHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred hhhCCcccEEEeEC----CccChhhhhhhccCCCCCEEEccCCc-cCccccch--HHHhhCCCCCEEECCCCcCCccccc
Confidence 25677777777777 45555555666677777777777663 22110000 0011122222 1111111111 11
Q ss_pred CCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCC-CC--
Q 001955 868 TAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEG-LQ-- 944 (991)
Q Consensus 868 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~-- 944 (991)
..+..+++|+.|++++|.-...++. .+. ++|+.|++++| .++.+|..+..+++|+.|++++|+ ++.+|.. +.
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 467 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRL 467 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred chhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccC
Confidence 1234567777777777732233332 121 57888888877 566777777778888888888875 6677765 22
Q ss_pred --cCeEEEecCc
Q 001955 945 --LQSLEIIQCP 954 (991)
Q Consensus 945 --L~~L~i~~c~ 954 (991)
|+.|++.++|
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 7778877764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=8.2e-26 Score=268.22 Aligned_cols=407 Identities=18% Similarity=0.183 Sum_probs=253.4
Q ss_pred CCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCcc-ccCC
Q 001955 519 NERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSL-IGKL 597 (991)
Q Consensus 519 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~l 597 (991)
+..++++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.+..+|.. |+++
T Consensus 25 ~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 25 TAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSRINTI------EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CTTCCEEEC-CSSCCCEECSSTTSSCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCccEEEC-cCCccCccChhhhhcCCcccEEECCCCCcCcc------ChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 356777777 44444444456778888899998888765543 345678888899999998888877654 8888
Q ss_pred CCccEEEccCCCCcc-ccchhhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeeccccccCcCCcCCCCCCCCCcC
Q 001955 598 KHLRYFNLSHNADIK-SLPDSVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTL 675 (991)
Q Consensus 598 ~~L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L 675 (991)
++|++|++++|.+.+ ..|..++++++|++|++++|..++.+| ..+.++++|++|++++|......|..++.+++|++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 899999998888332 456678888889999998877667776 468888888899888886655677778777777777
Q ss_pred CccccCCcCCccc-ccCcccCCc--------------------------eeEEcccCCch---hhHhhhcccCCCCCceE
Q 001955 676 PLFMVGRKTQLSQ-LNGLNKLRG--------------------------SLRIENLGEKQ---NSRLANLEAKEGLQSLV 725 (991)
Q Consensus 676 ~l~~~~~~~~~~~-l~~l~~L~~--------------------------~l~i~~~~~~~---~~~~~~l~~~~~L~~L~ 725 (991)
++..+........ +..+.+|+. .+.+.+..-.. ......+..+.+|+.+.
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 6655443210000 011122220 12221111000 01111223344555555
Q ss_pred EEecCCCCc-------------------cchhHhh------hccC----CCCCCcceEEEeeeCCCccCcccc-cccccC
Q 001955 726 LQWDANKTV-------------------IYIDDAL------LEGL----KPHQNLKELTIIRFGGIRLSSWLS-SVTNLT 775 (991)
Q Consensus 726 l~~~~~~~~-------------------~~~~~~~------l~~l----~~~~~L~~L~l~~~~~~~lp~~l~-~l~~L~ 775 (991)
++.+..... +...... ...+ ...++|+.|.+.++....+|.++. .+++|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence 554321000 0000000 0000 012467788888877777887764 789999
Q ss_pred ceeeccccccccCC----CCCCCCccceeeccccccceeccCCCC--CCCCCCCCccEEeeccccccccccccCCCcccc
Q 001955 776 MIDISICIKCQYIP----ELDQLPSLKRLRLFKLSALEYISSSSP--PSTTIFPSLEELRIFACPELKGWWRTDGSTTQT 849 (991)
Q Consensus 776 ~L~L~~~~~~~~lp----~l~~l~~L~~L~l~~~~~l~~i~~~~~--~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 849 (991)
.|++++|...+.+| .++.+++|++|++++ +.+..... ..+..+++|++|++++| .++.++.. ..
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-----~~ 407 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ----NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS-----CQ 407 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT----SCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC-----CC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccC----CcccccccchhhhhcCCCCCEEECCCC-CCccCChh-----hc
Confidence 99999987765442 367888999999988 33322110 22457889999999888 44433221 11
Q ss_pred CCCCCCCCccceeecccCCC---CCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCC
Q 001955 850 AEPPFSHPLQQTMMRTTNTA---EPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLK 926 (991)
Q Consensus 850 ~~~~l~~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 926 (991)
.++.+ +.+.+..+... ...+++|+.|++++| .++.++ ..+++|++|++++| .++.+|. ...+++|+
T Consensus 408 ~~~~L----~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N-~l~~~~----~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~ 476 (549)
T 2z81_A 408 WPEKM----RFLNLSSTGIRVVKTCIPQTLEVLDVSNN-NLDSFS----LFLPRLQELYISRN-KLKTLPD-ASLFPVLL 476 (549)
T ss_dssp CCTTC----CEEECTTSCCSCCCTTSCTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSSCCC-GGGCTTCC
T ss_pred ccccc----cEEECCCCCcccccchhcCCceEEECCCC-Chhhhc----ccCChhcEEECCCC-ccCcCCC-cccCccCC
Confidence 12222 22333222221 112368888888888 566554 46889999999999 6778887 46789999
Q ss_pred eEeeecCCCCCcCCCC-CC----cCeEEEecCc
Q 001955 927 TVGIYDCPNMAILPEG-LQ----LQSLEIIQCP 954 (991)
Q Consensus 927 ~L~l~~c~~l~~lp~~-~~----L~~L~i~~c~ 954 (991)
.|++++|+ +..+|.. +. |+.|++.+||
T Consensus 477 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 477 VMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence 99999987 5555543 32 8999998765
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=258.01 Aligned_cols=390 Identities=18% Similarity=0.130 Sum_probs=228.0
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~ 598 (991)
...+++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|++++|.++.+|. .+++++
T Consensus 52 ~~L~~L~L-s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEEC-CCCcCCccCcccccCchhCCEEeCcCCcCCcc------CHhhhcCccccccccccccccccCCCccccccc
Confidence 45677777 44444433456688999999999998875543 34667899999999999999998875 699999
Q ss_pred CccEEEccCCCCcc-ccchhhhcccCCCEEeCCCCCCCccccccccccccC----cEEeeccccccCcCCcCCCCCCCCC
Q 001955 599 HLRYFNLSHNADIK-SLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSL----RHLAIESCLSLTDMPNGLGQLTNLR 673 (991)
Q Consensus 599 ~L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L----~~L~l~~~~~~~~lp~~l~~L~~L~ 673 (991)
+|++|++++|.+.. .+|..++++++|++|++++|......|..++.+++| +.|++++|. +..+++......+|+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLH 203 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccCcce
Confidence 99999999998443 479999999999999999976555556778888888 889998884 334433322223555
Q ss_pred cCCccccCCc-----------------------------------------------------------CCcccccCccc
Q 001955 674 TLPLFMVGRK-----------------------------------------------------------TQLSQLNGLNK 694 (991)
Q Consensus 674 ~L~l~~~~~~-----------------------------------------------------------~~~~~l~~l~~ 694 (991)
.|++..+... .....+..+.+
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 5544332100 00111223344
Q ss_pred CCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccc----------hhHhhhc---cCCCCCCcceEEEeeeCC
Q 001955 695 LRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIY----------IDDALLE---GLKPHQNLKELTIIRFGG 761 (991)
Q Consensus 695 L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----------~~~~~l~---~l~~~~~L~~L~l~~~~~ 761 (991)
++ .+.+.+.... .....+..+ +|+.|+++.+....... ...+... ....+++|+.|.+.++..
T Consensus 284 L~-~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 284 VS-SFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp CS-EEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred cc-EEEecCccch--hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 44 4444332111 011112333 66666666554210000 0000000 001234444444444433
Q ss_pred Ccc---CcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCC-CCCCCCCCccEEeeccccccc
Q 001955 762 IRL---SSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSP-PSTTIFPSLEELRIFACPELK 837 (991)
Q Consensus 762 ~~l---p~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~~L~~L~l~~~~~L~ 837 (991)
... |..+..+++|+.|++++|......+.+..+++|+.|++.+ +.+....+ ..+..+++|+.|++++|.-..
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT----SEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccC----CccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 322 2334445555555555554333333344555555555555 23322222 233445555555555552111
Q ss_pred cccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCC-CCCCCccCCCCCCccEEEEecCCCCCccc
Q 001955 838 GWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDL-ETWPEEMMPNFPSIQNISIELCPKLISLP 916 (991)
Q Consensus 838 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 916 (991)
. ....+..+++|+.|++++|... ..+|. .+..+++|+.|++++|......|
T Consensus 436 ~---------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 436 A---------------------------FNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp C---------------------------CTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECT
T ss_pred c---------------------------chhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCCh
Confidence 0 1112456788888888888433 24553 57788888888888884333347
Q ss_pred ccCCCCCCCCeEeeecCCCCCcCCCC-CC----cCeEEEecCc
Q 001955 917 QRLNKATTLKTVGIYDCPNMAILPEG-LQ----LQSLEIIQCP 954 (991)
Q Consensus 917 ~~l~~l~~L~~L~l~~c~~l~~lp~~-~~----L~~L~i~~c~ 954 (991)
..+..+++|+.|++++|. +..+|.. +. |+.|++.+||
T Consensus 488 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 778888888888888886 5555543 22 8888888754
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.5e-23 Score=253.49 Aligned_cols=149 Identities=20% Similarity=0.114 Sum_probs=104.1
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~ 598 (991)
...+++.+ ..+......+..+..+++|++|.+.++..... ++..|.++++|++|+|++|.+..+| ..|++++
T Consensus 49 ~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 49 SQLTSLDV-GFNTISKLEPELCQKLPMLKVLNLQHNELSQL------SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp TTCSEEEC-CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred CcCcEEEC-CCCccCccCHHHHhcccCcCEEECCCCccCcc------ChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 34666776 44444444566788899999999888765432 3445788899999999999888775 5788899
Q ss_pred CccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccccc--ccccCcEEeeccccccCcCCcCCCCCCCCCcC
Q 001955 599 HLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIG--KMVSLRHLAIESCLSLTDMPNGLGQLTNLRTL 675 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~--~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L 675 (991)
+|++|++++|.+.+..|..++++++|++|++++|...+..|..+. .+++|++|++++|......|..++.+.+|+.|
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 999999999886566677788899999999988654333344333 45788888888884444444445444444333
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.8e-24 Score=253.00 Aligned_cols=409 Identities=15% Similarity=0.144 Sum_probs=244.5
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-hhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD-SVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~ 622 (991)
++|++|.+.++..... .+..+.++++|++|+|++|.++.++ ..|.++++|++|++++|. +..+|. .+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI------GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEE------CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCT
T ss_pred CCccEEECcCCccCcc------ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCC
Confidence 7899999998876543 2456789999999999999999775 689999999999999999 555554 599999
Q ss_pred CCCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCcC-CcccccCcccCCcee
Q 001955 623 NLQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRKT-QLSQLNGLNKLRGSL 699 (991)
Q Consensus 623 ~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~-~~~~l~~l~~L~~~l 699 (991)
+|++|++++|.... ..|..++++++|++|++++|..+..+| ..++.+++|++|++..+.... ....+..+.+|+ .+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH-HL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-EE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc-eE
Confidence 99999999976443 467889999999999999997677777 579999999999998887652 334455555555 45
Q ss_pred EEcccCCchhhHhhhcccCCCCCceEEEecCCCCcc----------------ch-----hH----hhhccCCCCCCcceE
Q 001955 700 RIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVI----------------YI-----DD----ALLEGLKPHQNLKEL 754 (991)
Q Consensus 700 ~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------~~-----~~----~~l~~l~~~~~L~~L 754 (991)
.+....... ........+++|+.|+++.+...... .. .+ .....+...++|+.|
T Consensus 178 ~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 178 TLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred ecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 544332211 11111234677888888776432110 00 00 000111112233333
Q ss_pred EEeeeCCCc---------------------------cCcc---------cccccccCceeeccccccccCCC-C-CCCCc
Q 001955 755 TIIRFGGIR---------------------------LSSW---------LSSVTNLTMIDISICIKCQYIPE-L-DQLPS 796 (991)
Q Consensus 755 ~l~~~~~~~---------------------------lp~~---------l~~l~~L~~L~L~~~~~~~~lp~-l-~~l~~ 796 (991)
.+.++.... +|.+ ...+++|+.|++++|.. ..+|. + ..+++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCcc
Confidence 333322111 1111 11235666677766643 34442 2 35777
Q ss_pred cceeeccccccceeccCCC---CCCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCccceeecccCCCCCC
Q 001955 797 LKRLRLFKLSALEYISSSS---PPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPLQQTMMRTTNTAEPP 872 (991)
Q Consensus 797 L~~L~l~~~~~l~~i~~~~---~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~ 872 (991)
|++|++++ +.+.... ...++.+++|+.|++++|. ++.++... .....++.+. +.+....+......+..
T Consensus 336 L~~L~Ls~----N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 408 (549)
T 2z81_A 336 LEFLDLSE----NLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTG--EILLTLKNLTSLDISRNTFHPMPDSCQW 408 (549)
T ss_dssp CCEEECCS----SCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHH--HHGGGCTTCCEEECTTCCCCCCCSCCCC
T ss_pred ccEEEccC----CccccccccchhhhhccccCcEEEccCCc-ccccccch--hhhhcCCCCCEEECCCCCCccCChhhcc
Confidence 88888877 3333222 1234567888888887772 32221100 0011222222 11111112222223445
Q ss_pred CCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC---cCeEE
Q 001955 873 FSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ---LQSLE 949 (991)
Q Consensus 873 l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~---L~~L~ 949 (991)
+++|++|++++| .++.++... .++|+.|++++| .++.++ ..+++|++|++++|. ++.+|.... |+.|+
T Consensus 409 ~~~L~~L~Ls~N-~l~~l~~~~---~~~L~~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 409 PEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVSNN-NLDSFS---LFLPRLQELYISRNK-LKTLPDASLFPVLLVMK 479 (549)
T ss_dssp CTTCCEEECTTS-CCSCCCTTS---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEE
T ss_pred cccccEEECCCC-Ccccccchh---cCCceEEECCCC-Chhhhc---ccCChhcEEECCCCc-cCcCCCcccCccCCEEe
Confidence 566666666666 455554421 246777777776 454443 467888888888886 678887433 88888
Q ss_pred EecCcchhhhhcCCCCCCCCCCCCCCeEEEcCccc
Q 001955 950 IIQCPQLSERCGNNMAVDWPKIAHIPNIRIDNDLI 984 (991)
Q Consensus 950 i~~c~~L~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 984 (991)
+++|. ++... ...+....++..+.+.++.+
T Consensus 480 Ls~N~-l~~~~----~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 480 ISRNQ-LKSVP----DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCSSC-CCCCC----TTGGGGCTTCCEEECCSSCB
T ss_pred cCCCc-cCCcC----HHHHhcCcccCEEEecCCCc
Confidence 88873 32211 11133456677777777665
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.8e-23 Score=248.09 Aligned_cols=377 Identities=17% Similarity=0.167 Sum_probs=211.0
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchhhhcccC
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLN 623 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~ 623 (991)
++|+.|.+.++..... .+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTT
T ss_pred CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--cccc
Confidence 7888888888766543 345678888899999999888876 5678888999999999888 6788876 7888
Q ss_pred CCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCCcCCCCCCCC--CcCCccccCC--c-CCcccccCc-----
Q 001955 624 LQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNL--RTLPLFMVGR--K-TQLSQLNGL----- 692 (991)
Q Consensus 624 L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L--~~L~l~~~~~--~-~~~~~l~~l----- 692 (991)
|++|++++|.... .+|..++++++|++|++++|.... ..+..+++| ++|++..+.. . .....+..+
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 9999998865433 245788888999999988874332 234455555 8887776654 2 111222221
Q ss_pred ---------------------ccCCceeEEcccCC-c--hhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccC---
Q 001955 693 ---------------------NKLRGSLRIENLGE-K--QNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGL--- 745 (991)
Q Consensus 693 ---------------------~~L~~~l~i~~~~~-~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l--- 745 (991)
.+|+ .+.+..-.. . -......+..++.|+.+.+..+.. ..+.+..+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l------~~~~~~~~~~~ 272 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET------TWKCSVKLFQF 272 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE------CHHHHHHHHHH
T ss_pred EEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcC------cHHHHHHHHHh
Confidence 1111 111111100 0 011122233444444444443211 00000000
Q ss_pred CCCCCcceEEEeeeCCC-ccCccc----------------------------cc---ccccCceeeccccccccCCCCCC
Q 001955 746 KPHQNLKELTIIRFGGI-RLSSWL----------------------------SS---VTNLTMIDISICIKCQYIPELDQ 793 (991)
Q Consensus 746 ~~~~~L~~L~l~~~~~~-~lp~~l----------------------------~~---l~~L~~L~L~~~~~~~~lp~l~~ 793 (991)
...++|+.|.+.++... .+|.++ .. ..+|+.|++++|... ..+..+.
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~ 351 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMVCPPS 351 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCCCCSS
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-cccCccC
Confidence 01124444444444322 233322 11 133555555555332 1222255
Q ss_pred CCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCccceeecc-c-CCCC
Q 001955 794 LPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPLQQTMMRT-T-NTAE 870 (991)
Q Consensus 794 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~-~-~~~~ 870 (991)
+++|++|++++ +.+....+..+..+++|+.|++++| .+..+.... .....++.+. +.+....+.. . ...+
T Consensus 352 l~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 352 PSSFTFLNFTQ----NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVA--LMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCCCEEECCS----SCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHH--HTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCceEEECCC----CccccchhhhhcccCCCCEEECCCC-CcCCcccch--hhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 66677777766 4454445555566667777776665 222211000 0011122222 1111111111 1 1124
Q ss_pred CCCCccCeeeeccCCCCCCCCCccCCCC-CCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCC-CC----
Q 001955 871 PPFSKLKSLTIESIDDLETWPEEMMPNF-PSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEG-LQ---- 944 (991)
Q Consensus 871 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~---- 944 (991)
..+++|+.|++++|.-...++. .+ ++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+|.. +.
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTT
T ss_pred cCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCC
Confidence 5678888888888842222222 33 68899999888 778888888888899999998887 7788876 32
Q ss_pred cCeEEEecCc
Q 001955 945 LQSLEIIQCP 954 (991)
Q Consensus 945 L~~L~i~~c~ 954 (991)
|+.|++.++|
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 8888888764
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=258.55 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=197.0
Q ss_pred cCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCC-cccc-CccccCCCCccEEEccCCCCccccchhhhc
Q 001955 543 RAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSE-IETV-PSLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 543 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
-.++|+.|.+..+..... .+..|.++++|++|+|++|. +..+ |..|.++++|++|+|++|.+.+..|..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i------~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV------TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEE------CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCcCCcc------ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 457899999998876543 24567899999999999994 4466 778999999999999999955566889999
Q ss_pred ccCCCEEeCCCCCCCcccccc--ccccccCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCcC-CcccccCc--cc
Q 001955 621 LLNLQTLDLSCCDDLVELPRD--IGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRKT-QLSQLNGL--NK 694 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~-~~~~l~~l--~~ 694 (991)
+++|++|+|++|...+.+|.. ++++++|++|++++|......| ..++++++|++|++..+.... ....+..+ .+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 999999999998766666765 8999999999999995544333 568999999999998876542 22333333 33
Q ss_pred CCceeEEcccCCchhhHhhhcccC------CCCCceEEEecCCCCcc---------------------------------
Q 001955 695 LRGSLRIENLGEKQNSRLANLEAK------EGLQSLVLQWDANKTVI--------------------------------- 735 (991)
Q Consensus 695 L~~~l~i~~~~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~--------------------------------- 735 (991)
|+ .+.+....-.. .....+..+ ..|+.|+++.+......
T Consensus 176 L~-~L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 176 LS-FFSLAANSLYS-RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SC-CCEECCSBSCC-CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred cc-eEECCCCcccc-ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 43 33333221110 000011111 13777777665211000
Q ss_pred chhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccC
Q 001955 736 YIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 736 ~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
......+.++ ..++|+.|.+.++....+ |.++..+++|+.|+|++|......| .+..+++|++|++++ +.+..
T Consensus 254 ~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~----N~l~~ 328 (844)
T 3j0a_A 254 DPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY----NLLGE 328 (844)
T ss_dssp TGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES----CCCSC
T ss_pred CCChhhhhcc-ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC----CCCCc
Confidence 0011111111 136899999988776555 5667899999999999998766655 588999999999998 66666
Q ss_pred CCCCCCCCCCCccEEeeccc
Q 001955 814 SSPPSTTIFPSLEELRIFAC 833 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~ 833 (991)
..+..+..+++|+.|++++|
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSC
T ss_pred cCHHHhcCCCCCCEEECCCC
Confidence 66777889999999999876
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2e-23 Score=241.56 Aligned_cols=324 Identities=21% Similarity=0.269 Sum_probs=152.3
Q ss_pred hhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhh
Q 001955 540 ALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVS 619 (991)
Q Consensus 540 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~ 619 (991)
.+..+++|++|.+.++..... +. +.++++|++|++++|.+..++. +.++++|++|++++|. +..+|. ++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~-------~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~ 131 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDI-------TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LK 131 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GT
T ss_pred chhhhcCCCEEECCCCccCCc-------hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-Hc
Confidence 355566666666665543321 11 4566666666666666665554 6666666666666665 455544 56
Q ss_pred cccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCcee
Q 001955 620 RLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSL 699 (991)
Q Consensus 620 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l 699 (991)
++++|++|++++|. +..+| .++.+++|++|+++++ ...++. ++++++|++|++..+... .+..+..+.+|+ .+
T Consensus 132 ~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~-~L 204 (466)
T 1o6v_A 132 NLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVS-DISVLAKLTNLE-SL 204 (466)
T ss_dssp TCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCC-CCGGGGGCTTCS-EE
T ss_pred CCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCC-CChhhccCCCCC-EE
Confidence 66666666666643 33443 3566666666666432 222322 556666666666554432 112233333333 33
Q ss_pred EEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceee
Q 001955 700 RIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDI 779 (991)
Q Consensus 700 ~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 779 (991)
.+.+..-.. ...+..+++|+.|+++.+.... +..+..+++|+.|.+.++....++. +..+++|+.|++
T Consensus 205 ~l~~n~l~~---~~~~~~l~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 205 IATNNQISD---ITPLGILTNLDELSLNGNQLKD--------IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp ECCSSCCCC---CGGGGGCTTCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred EecCCcccc---cccccccCCCCEEECCCCCccc--------chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 332221110 0012233444444444432111 0112223444444444444333333 344444555555
Q ss_pred ccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCcc
Q 001955 780 SICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQ 859 (991)
Q Consensus 780 ~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~ 859 (991)
++|.... ++.+..+++|+.|++++ +.+.... .+..+++|+.|++++|. +..+.
T Consensus 273 ~~n~l~~-~~~~~~l~~L~~L~L~~----n~l~~~~--~~~~l~~L~~L~L~~n~-l~~~~------------------- 325 (466)
T 1o6v_A 273 GANQISN-ISPLAGLTALTNLELNE----NQLEDIS--PISNLKNLTYLTLYFNN-ISDIS------------------- 325 (466)
T ss_dssp CSSCCCC-CGGGTTCTTCSEEECCS----SCCSCCG--GGGGCTTCSEEECCSSC-CSCCG-------------------
T ss_pred CCCccCc-cccccCCCccCeEEcCC----CcccCch--hhcCCCCCCEEECcCCc-CCCch-------------------
Confidence 4443222 22244444555555544 2221111 13344445555554441 11110
Q ss_pred ceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 860 QTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 860 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
.+..+++|+.|++++| .++.++ .+..+++|+.|++++|+ +..++. +..+++|+.|++++|+
T Consensus 326 ---------~~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 ---------PVSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp ---------GGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred ---------hhccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 0234566666666666 444443 25566666666666663 333332 5566666666666665
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.3e-23 Score=242.95 Aligned_cols=351 Identities=14% Similarity=0.135 Sum_probs=194.0
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcc-cc-CccccCCCCccEEEccCCCCccccchhhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE-TV-PSLIGKLKHLRYFNLSHNADIKSLPDSVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~-~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~ 622 (991)
++|++|.+.++..... .+..+.++++|++|+|++|.+. .+ |..|.++++|++|+|++|.+.+..|..+++++
T Consensus 30 ~~l~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL------NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEE------CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccCcC------ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 5666666666554332 2344566666777777666664 33 34566666677777766664344466666666
Q ss_pred CCCEEeCCCCCCCcccccc--ccccccCcEEeeccccccCcCCcC-CCCCCCCCcCCccccCCcCC-cccccCc--ccCC
Q 001955 623 NLQTLDLSCCDDLVELPRD--IGKMVSLRHLAIESCLSLTDMPNG-LGQLTNLRTLPLFMVGRKTQ-LSQLNGL--NKLR 696 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~-~~~l~~l--~~L~ 696 (991)
+|++|+|++|...+.+|.. +.++++|++|++++|......|.. ++++++|++|++..+..... ...+..+ .++.
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 7777777665544334443 666666777776666433333443 56666666666665544311 1112111 1111
Q ss_pred ceeEEcccCCc--h-----hhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCc------
Q 001955 697 GSLRIENLGEK--Q-----NSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIR------ 763 (991)
Q Consensus 697 ~~l~i~~~~~~--~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~------ 763 (991)
.+.+...... . ......+...++|+.|+++.+.... .....+.......+|+.|.+.++....
T Consensus 184 -~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 184 -LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE---SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp -EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH---HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred -ccccccCcccccchhhccccccccccccceeeeEecCCCcccc---cchhhhhccccccceeeEeeccccccccccchh
Confidence 1111111100 0 0111122334556666666553211 011111111223566666665542211
Q ss_pred -cC----cccc--cccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccc
Q 001955 764 -LS----SWLS--SVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPE 835 (991)
Q Consensus 764 -lp----~~l~--~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~ 835 (991)
++ ..+. ..++|+.|++++|...+.+| .++.+++|++|++++ +.+....+..+..+++|+.|++++|.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ----NEINKIDDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC----CcccccChhHhcCcccCCEEECCCCc-
Confidence 11 1111 23578888888877666555 467778888888877 44544445566677888888887772
Q ss_pred cccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcc
Q 001955 836 LKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISL 915 (991)
Q Consensus 836 L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 915 (991)
+..+.. ..+..+++|+.|++++| .++.++...+..+++|++|++++| .++.+
T Consensus 335 l~~~~~--------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 335 LGSIDS--------------------------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp CCEECG--------------------------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred cCCcCh--------------------------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccC
Confidence 222211 01346778888888887 566665556777888888888887 56666
Q ss_pred cc-cCCCCCCCCeEeeecCCCCCc
Q 001955 916 PQ-RLNKATTLKTVGIYDCPNMAI 938 (991)
Q Consensus 916 p~-~l~~l~~L~~L~l~~c~~l~~ 938 (991)
|. .+..+++|+.|++++|+.-..
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHhHhccCCcccEEEccCCCcccC
Confidence 64 357788888888888874433
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.6e-23 Score=242.17 Aligned_cols=345 Identities=15% Similarity=0.131 Sum_probs=241.6
Q ss_pred CcccEEEccCCCcccc-CccccCCCCccEEEccCCCCcccc-chhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSL-PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
++|++|+|++|.++.+ |..|.++++|++|++++|...+.+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999976 778999999999999999855566 45789999999999999876666688999999999999
Q ss_pred eccccccCcCCcC--CCCCCCCCcCCccccCCcCCcc-c-ccCcccCCceeEEcccCC--chhhHhhhcccCCCCCceEE
Q 001955 653 IESCLSLTDMPNG--LGQLTNLRTLPLFMVGRKTQLS-Q-LNGLNKLRGSLRIENLGE--KQNSRLANLEAKEGLQSLVL 726 (991)
Q Consensus 653 l~~~~~~~~lp~~--l~~L~~L~~L~l~~~~~~~~~~-~-l~~l~~L~~~l~i~~~~~--~~~~~~~~l~~~~~L~~L~l 726 (991)
+++|......|.. ++.+++|++|++..+....... . +..+.+|+ .+.+.+..- ........+. ..+++.|.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~-~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH-VLDLTFNKVKSICEEDLLNFQ-GKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC-EEECTTCCBSCCCTTTSGGGT-TCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc-EEeCCCCcccccChhhhhccc-ccccccccc
Confidence 9999654445554 8999999999998887664322 2 55666666 555543321 1111111111 135556665
Q ss_pred EecCCCCc--cchhHhhhccCCCCCCcceEEEeeeCCCc-cCccccc---ccccCceeeccccccccCC-----------
Q 001955 727 QWDANKTV--IYIDDALLEGLKPHQNLKELTIIRFGGIR-LSSWLSS---VTNLTMIDISICIKCQYIP----------- 789 (991)
Q Consensus 727 ~~~~~~~~--~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-lp~~l~~---l~~L~~L~L~~~~~~~~lp----------- 789 (991)
+.+..... ..........+...++|+.|.+.++.... .|.++.. .++|+.|++++|.......
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 55432111 11111222233344677888877765432 3444443 3788888888875443211
Q ss_pred CCC--CCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccC
Q 001955 790 ELD--QLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTN 867 (991)
Q Consensus 790 ~l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 867 (991)
.+. ..++|+.|++++ +.+....+..+..+++|+.|++++|. +.... .
T Consensus 268 ~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------------------------~ 316 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSK----SKIFALLKSVFSHFTDLEQLTLAQNE-INKID--------------------------D 316 (455)
T ss_dssp TTGGGTTSCCCEEECCS----SCCCEECTTTTTTCTTCCEEECTTSC-CCEEC--------------------------T
T ss_pred ccccccccCceEEEecC----ccccccchhhcccCCCCCEEECCCCc-ccccC--------------------------h
Confidence 111 236899999988 55555556667788999999998883 22111 1
Q ss_pred CCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC---
Q 001955 868 TAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ--- 944 (991)
Q Consensus 868 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~--- 944 (991)
..+..+++|++|++++| .++.++...+..+++|++|++++|......|..+..+++|++|++++|. ++.+|....
T Consensus 317 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 394 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccC
Confidence 12457899999999999 7788877778999999999999995433447889999999999999987 777876432
Q ss_pred --cCeEEEecCc
Q 001955 945 --LQSLEIIQCP 954 (991)
Q Consensus 945 --L~~L~i~~c~ 954 (991)
|+.|++.++|
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 9999998753
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.2e-23 Score=233.70 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=198.4
Q ss_pred hhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhh
Q 001955 540 ALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVS 619 (991)
Q Consensus 540 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~ 619 (991)
.+..+++|+.|.+.++..... +. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-------~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-------QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-------TT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGT
T ss_pred cchhcccccEEEEeCCccccc-------hh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHc
Confidence 355678888888877655431 22 5778889999999888888776 8888899999998887 66666 488
Q ss_pred cccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCcee
Q 001955 620 RLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSL 699 (991)
Q Consensus 620 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l 699 (991)
++++|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|++|++..+......
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~------------- 171 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT------------- 171 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-------------
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch-------------
Confidence 88899999998854 556665 8888889999988886555544 4778888888877554322110
Q ss_pred EEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceee
Q 001955 700 RIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDI 779 (991)
Q Consensus 700 ~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 779 (991)
.+..+++|+.|+++++.... +..+..+++|+.|.+.++....++. +..+++|+.|++
T Consensus 172 --------------~~~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l 228 (347)
T 4fmz_A 172 --------------PIANLTDLYSLSLNYNQIED--------ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKI 228 (347)
T ss_dssp --------------GGGGCTTCSEEECTTSCCCC--------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred --------------hhccCCCCCEEEccCCcccc--------cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEc
Confidence 02334556666665543211 0113344566777776665555544 567777777777
Q ss_pred ccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCcc
Q 001955 780 SICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQ 859 (991)
Q Consensus 780 ~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~ 859 (991)
++|... .++.+..+++|++|+++++ .+.. ...+..+++|+.|++++| .+..+.
T Consensus 229 ~~n~l~-~~~~~~~l~~L~~L~l~~n----~l~~--~~~~~~l~~L~~L~l~~n-~l~~~~------------------- 281 (347)
T 4fmz_A 229 GNNKIT-DLSPLANLSQLTWLEIGTN----QISD--INAVKDLTKLKMLNVGSN-QISDIS------------------- 281 (347)
T ss_dssp CSSCCC-CCGGGTTCTTCCEEECCSS----CCCC--CGGGTTCTTCCEEECCSS-CCCCCG-------------------
T ss_pred cCCccC-CCcchhcCCCCCEEECCCC----ccCC--ChhHhcCCCcCEEEccCC-ccCCCh-------------------
Confidence 777543 3344677777777777763 2222 123456777777777766 222221
Q ss_pred ceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 860 QTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 860 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
.+..+++|+.|++++| .+...+...+..+++|+.|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 282 ---------~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 ---------VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred ---------hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 1235677777777777 4554444456667777777777774 555544 6667777777777776
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=244.75 Aligned_cols=402 Identities=15% Similarity=0.142 Sum_probs=264.9
Q ss_pred chhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccc
Q 001955 537 FPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLP 615 (991)
Q Consensus 537 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP 615 (991)
+|..+. ++|+.|.+.++..... .+..+.++++|++|+|++|.++.+ |..|+++++|++|+|++|. +..+|
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 85 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISEL------WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS 85 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCC------CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEE
T ss_pred cccccc--ccccEEECCCCccccc------ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecC
Confidence 454444 8999999998876543 345678999999999999999977 7789999999999999999 77899
Q ss_pred hhhhcccCCCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCCcCCCCCCCC--CcCCccccCC--c-CCcccc
Q 001955 616 DSVSRLLNLQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNL--RTLPLFMVGR--K-TQLSQL 689 (991)
Q Consensus 616 ~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L--~~L~l~~~~~--~-~~~~~l 689 (991)
.. .+++|++|+|++|...+ .+|..++++++|++|++++|... . ..++.+++| ++|++..+.. . .....+
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h--hhccccccceeeEEEeecccccccccccccc
Confidence 87 89999999999976554 47899999999999999998533 2 346677777 8998887765 2 222223
Q ss_pred cCccc-----------------------CCceeEEcccCCc--------hhhHhhhcccCCCCCceEEEecCCCCccchh
Q 001955 690 NGLNK-----------------------LRGSLRIENLGEK--------QNSRLANLEAKEGLQSLVLQWDANKTVIYID 738 (991)
Q Consensus 690 ~~l~~-----------------------L~~~l~i~~~~~~--------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 738 (991)
..+.. +. .+....+... .......+..+++|+.|+++.+.. .
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l------~ 233 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVA-NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET------T 233 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCS-EEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE------E
T ss_pred cccccceEEEEeccCcchhhhhhhhhhccc-ceeeccccccccccccceeecchhhhccccchhhcccccccc------C
Confidence 22221 11 1111111110 111223455566666666665421 1
Q ss_pred HhhhccCC---CCCCcceEEEeeeCCC-ccCccc-----ccccccCceeeccccccccCC--CCCCC---Cccceeeccc
Q 001955 739 DALLEGLK---PHQNLKELTIIRFGGI-RLSSWL-----SSVTNLTMIDISICIKCQYIP--ELDQL---PSLKRLRLFK 804 (991)
Q Consensus 739 ~~~l~~l~---~~~~L~~L~l~~~~~~-~lp~~l-----~~l~~L~~L~L~~~~~~~~lp--~l~~l---~~L~~L~l~~ 804 (991)
...+.++. ..++|+.|.+.++... .+|.++ ..+++|+.+++++|.. .+| .+..+ ++|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 11111111 1247778888777655 677776 6778888888887755 444 12222 4688888877
Q ss_pred cccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCC--------CCCCCCcc
Q 001955 805 LSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNT--------AEPPFSKL 876 (991)
Q Consensus 805 ~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--------~~~~l~~L 876 (991)
+ .+.... ....+++|++|++++|.--...+. .+..++.+ +.+.+..+.. .+..+++|
T Consensus 312 n----~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L----~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 312 T----RMVHML--CPSKISPFLHLDFSNNLLTDTVFE-----NCGHLTEL----ETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp S----CCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-----TCCCCSSC----CEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred C----cccccc--chhhCCcccEEEeECCccChhhhh-----hhccCCCC----CEEEccCCccCccccchHHHhhCCCC
Confidence 3 232211 125789999999998842221111 11223332 2333332222 25678899
Q ss_pred CeeeeccCCCCCC-CCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCCCC----cCeEEEe
Q 001955 877 KSLTIESIDDLET-WPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEGLQ----LQSLEII 951 (991)
Q Consensus 877 ~~L~l~~~~~l~~-l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~----L~~L~i~ 951 (991)
++|++++| .+.. +|...+..+++|+.|++++|...+.+|..+. ++|+.|++++|. ++.+|..+. |+.|+++
T Consensus 377 ~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 377 QQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECC
Confidence 99999998 4554 7776678889999999999965566666554 789999999986 778887653 9999999
Q ss_pred cCcchhhhhcCCCCCCCCCCCCCCeEEEcCcccc
Q 001955 952 QCPQLSERCGNNMAVDWPKIAHIPNIRIDNDLIQ 985 (991)
Q Consensus 952 ~c~~L~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 985 (991)
+|. ++... ...+....++..+.+.++.+.
T Consensus 453 ~N~-l~~l~----~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 453 SNQ-LKSVP----DGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp SSC-CCCCC----TTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-CCccC----HHHhccCCcccEEECcCCCCc
Confidence 883 43221 112455677888888887765
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.5e-24 Score=238.89 Aligned_cols=307 Identities=18% Similarity=0.147 Sum_probs=215.7
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhc
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
..+.+++.+.+.++..... ++.++..+++|++|+|++|.++.++ ..|..+++|++|++++|.+.+..|..+++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL------PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESCEESEE------CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCCchhhC------ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 4568899998887654432 3556788999999999999999875 48999999999999999944444566899
Q ss_pred ccCCCEEeCCCCCCCcccccc-ccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCcee
Q 001955 621 LLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSL 699 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l 699 (991)
+++|++|++++| .+..+|.. +.++++|++|++++|......|..++.+++|++|++..+.....
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------- 180 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-------------- 180 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--------------
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--------------
Confidence 999999999996 46778876 48999999999999854444456689999999999866543210
Q ss_pred EEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceee
Q 001955 700 RIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDI 779 (991)
Q Consensus 700 ~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 779 (991)
.+..+++|+.|+++.+. +..+..+++|+.|.+.++....+|.. .+++|+.|++
T Consensus 181 --------------~~~~l~~L~~L~l~~n~-----------l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l 233 (390)
T 3o6n_A 181 --------------DLSLIPSLFHANVSYNL-----------LSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKL 233 (390)
T ss_dssp --------------CGGGCTTCSEEECCSSC-----------CSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEEC
T ss_pred --------------ccccccccceeeccccc-----------ccccCCCCcceEEECCCCeeeecccc--ccccccEEEC
Confidence 01223455566555442 22333456788888887776666543 3578888888
Q ss_pred ccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCcc
Q 001955 780 SICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQ 859 (991)
Q Consensus 780 ~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~ 859 (991)
++|... ..+.++.+++|++|++++ +.+....+..+..+++|+.|++++| .+..++.
T Consensus 234 ~~n~l~-~~~~l~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------------ 289 (390)
T 3o6n_A 234 QHNNLT-DTAWLLNYPGLVEVDLSY----NELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------------ 289 (390)
T ss_dssp CSSCCC-CCGGGGGCTTCSEEECCS----SCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC------------------
T ss_pred CCCCCc-ccHHHcCCCCccEEECCC----CcCCCcChhHccccccCCEEECCCC-cCcccCc------------------
Confidence 888544 346777888888888887 4444444555667788888888776 2322211
Q ss_pred ceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 860 QTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 860 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
....+++|+.|++++| .+..+|.. +..+++|+.|++++| .++.+| +..+++|+.|++++|+
T Consensus 290 ---------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 290 ---------YGQPIPTLKVLDLSHN-HLLHVERN-QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ---------SSSCCTTCCEEECCSS-CCCCCGGG-HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ---------ccCCCCCCCEEECCCC-cceecCcc-ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 1235677777777777 56666552 455777777777777 455554 5667777777777776
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=8.1e-23 Score=236.42 Aligned_cols=341 Identities=20% Similarity=0.229 Sum_probs=258.2
Q ss_pred cCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhccc
Q 001955 543 RAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLL 622 (991)
Q Consensus 543 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~ 622 (991)
.++++++|.+.++.... ++. +..+++|++|+|++|.++.+|. +.++++|++|++++|. +..+|. +++++
T Consensus 44 ~l~~l~~L~l~~~~i~~-------l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-------IDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSCCCC-------CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCT
T ss_pred HhccccEEecCCCCCcc-------Ccc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCC
Confidence 35678888877765432 222 5789999999999999999877 9999999999999998 677776 99999
Q ss_pred CCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEc
Q 001955 623 NLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIE 702 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~ 702 (991)
+|++|++++|. +..+|. +.++++|++|++++| .+..+| .++.+++|++|++... . ..+..+..+.+|+ .+.+.
T Consensus 113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~~-~-~~~~~~~~l~~L~-~L~l~ 185 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQ-V-TDLKPLANLTTLE-RLDIS 185 (466)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEES-C-CCCGGGTTCTTCC-EEECC
T ss_pred CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCCc-c-cCchhhccCCCCC-EEECc
Confidence 99999999964 666665 899999999999998 455665 4889999999998532 2 2334466666666 66665
Q ss_pred ccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccc
Q 001955 703 NLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISIC 782 (991)
Q Consensus 703 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~ 782 (991)
+..-.. ...+..+++|+.|+++.+...... .+..+++|+.|.+.++....++ .+..+++|+.|++++|
T Consensus 186 ~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 186 SNKVSD---ISVLAKLTNLESLIATNNQISDIT--------PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 253 (466)
T ss_dssp SSCCCC---CGGGGGCTTCSEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred CCcCCC---ChhhccCCCCCEEEecCCcccccc--------cccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCC
Confidence 443211 234667889999999877532211 1334678999999998777664 5778999999999999
Q ss_pred cccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCcccee
Q 001955 783 IKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTM 862 (991)
Q Consensus 783 ~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~ 862 (991)
..... +.+..+++|+.|++++ +.+.... .+..+++|+.|++++|. +..+..
T Consensus 254 ~l~~~-~~~~~l~~L~~L~l~~----n~l~~~~--~~~~l~~L~~L~L~~n~-l~~~~~--------------------- 304 (466)
T 1o6v_A 254 QISNL-APLSGLTKLTELKLGA----NQISNIS--PLAGLTALTNLELNENQ-LEDISP--------------------- 304 (466)
T ss_dssp CCCCC-GGGTTCTTCSEEECCS----SCCCCCG--GGTTCTTCSEEECCSSC-CSCCGG---------------------
T ss_pred ccccc-hhhhcCCCCCEEECCC----CccCccc--cccCCCccCeEEcCCCc-ccCchh---------------------
Confidence 76544 4488999999999998 4443322 26689999999999883 222211
Q ss_pred ecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCCCC
Q 001955 863 MRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILPEG 942 (991)
Q Consensus 863 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 942 (991)
+..+++|+.|++++| .+..++. +..+++|+.|++++| .++.++ .+..+++|+.|++++|+.....|..
T Consensus 305 -------~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 372 (466)
T 1o6v_A 305 -------ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTPLA 372 (466)
T ss_dssp -------GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred -------hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccchhh
Confidence 347899999999999 5666654 678999999999999 677775 6889999999999999854444421
Q ss_pred C-C-cCeEEEecCc
Q 001955 943 L-Q-LQSLEIIQCP 954 (991)
Q Consensus 943 ~-~-L~~L~i~~c~ 954 (991)
. . |+.|++.+|+
T Consensus 373 ~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 373 NLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCCEE
T ss_pred cCCCCCEEeccCCc
Confidence 1 1 9999998874
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1e-23 Score=251.53 Aligned_cols=307 Identities=18% Similarity=0.154 Sum_probs=228.7
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhc
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
..+.+++.+.+.++..... ++.++.++++|++|+|++|.++.+| ..|+.+++|++|+|++|.+.+..|..+++
T Consensus 48 l~l~~l~~l~l~~~~l~~l------p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL------PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGGCCCSEEEESSCEESEE------CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCceEEEeeCCCCCCc------CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 3567899998887655432 4567789999999999999999875 48999999999999999944444556799
Q ss_pred ccCCCEEeCCCCCCCcccccc-ccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCcee
Q 001955 621 LLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSL 699 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l 699 (991)
+++|++|+|++|. +..+|.. ++++++|++|++++|......|..++.+++|++|+++.+.....
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------- 186 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-------------- 186 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--------------
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--------------
Confidence 9999999999964 6677766 58999999999999965555556799999999999976643210
Q ss_pred EEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceee
Q 001955 700 RIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDI 779 (991)
Q Consensus 700 ~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L 779 (991)
.+..+++|+.|+++.+. +.++..+.+|+.|.+.++....+|..+ .++|+.|+|
T Consensus 187 --------------~~~~l~~L~~L~l~~n~-----------l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L 239 (597)
T 3oja_B 187 --------------DLSLIPSLFHANVSYNL-----------LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKL 239 (597)
T ss_dssp --------------CGGGCTTCSEEECCSSC-----------CSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEEC
T ss_pred --------------ChhhhhhhhhhhcccCc-----------cccccCCchhheeeccCCccccccccc--CCCCCEEEC
Confidence 01223455666655442 233445567888888887776666543 468999999
Q ss_pred ccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCcc
Q 001955 780 SICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQ 859 (991)
Q Consensus 780 ~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~ 859 (991)
++|...+ ++.++.+++|+.|++++ +.+....+..++.+++|+.|++++| .+..++.
T Consensus 240 ~~n~l~~-~~~l~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------------ 295 (597)
T 3oja_B 240 QHNNLTD-TAWLLNYPGLVEVDLSY----NELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------------ 295 (597)
T ss_dssp CSSCCCC-CGGGGGCTTCSEEECCS----SCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC------------------
T ss_pred CCCCCCC-ChhhccCCCCCEEECCC----CccCCCCHHHhcCccCCCEEECCCC-CCCCCCc------------------
Confidence 9986544 57788889999999988 5555555666778899999999887 2332221
Q ss_pred ceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 860 QTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 860 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
....+++|+.|++++| .+..+|.. +..+++|+.|+|++| .+..+| +..+++|+.|++++|+
T Consensus 296 ---------~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 296 ---------YGQPIPTLKVLDLSHN-HLLHVERN-QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---------SSSCCTTCCEEECCSS-CCCCCGGG-HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ---------ccccCCCCcEEECCCC-CCCccCcc-cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 1245788899999888 56677753 567888999999988 466665 6678889999998888
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.2e-22 Score=238.87 Aligned_cols=359 Identities=16% Similarity=0.119 Sum_probs=219.1
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKL 597 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l 597 (991)
.+..++++.+ ..+......+..+..+++|++|.+.++..... .+..|.++++|++|+|++|.++.+|.. .+
T Consensus 50 ~~~~L~~L~L-s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 50 LPPRTKALSL-SQNSISELRMPDISFLSELRVLRLSHNRIRSL------DFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp SCTTCCEEEC-CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE------CTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCCCcCEEEC-CCCCccccChhhhccCCCccEEECCCCCCCcC------CHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 3467888888 55555544567889999999999998876543 356688999999999999999999887 89
Q ss_pred CCccEEEccCCCCcccc--chhhhcccCCCEEeCCCCCCCccccccccccccC--cEEeeccccc--cCcCCcCCCC---
Q 001955 598 KHLRYFNLSHNADIKSL--PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSL--RHLAIESCLS--LTDMPNGLGQ--- 668 (991)
Q Consensus 598 ~~L~~L~L~~~~~~~~l--P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L--~~L~l~~~~~--~~~lp~~l~~--- 668 (991)
++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| ++|++++|.. ....|..+..
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 999999999999 5554 5789999999999999965433 345666666 9999999855 3444544433
Q ss_pred -----------------------CCCCCcCCccccCCc-----CCcccccCcc---------------------------
Q 001955 669 -----------------------LTNLRTLPLFMVGRK-----TQLSQLNGLN--------------------------- 693 (991)
Q Consensus 669 -----------------------L~~L~~L~l~~~~~~-----~~~~~l~~l~--------------------------- 693 (991)
+++|+.|++..+... ..+..+..+.
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 334555554433200 0000111111
Q ss_pred cCCceeEEcccC---CchhhHh-hhcccCC--------------------------CCCceEEEecCCCCccchhHhhhc
Q 001955 694 KLRGSLRIENLG---EKQNSRL-ANLEAKE--------------------------GLQSLVLQWDANKTVIYIDDALLE 743 (991)
Q Consensus 694 ~L~~~l~i~~~~---~~~~~~~-~~l~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~l~ 743 (991)
+++ .+.+.+.. ....... .....+. +|+.|+++.+..... .
T Consensus 277 ~L~-~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~--------~ 347 (562)
T 3a79_B 277 PVE-YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM--------V 347 (562)
T ss_dssp SEE-EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC--------C
T ss_pred ccc-EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc--------c
Confidence 111 12221111 0000000 0001122 233333333221000 0
Q ss_pred cCCCCCCcceEEEeeeCCCc-cCcccccccccCceeecccccccc--CC-CCCCCCccceeeccccccceeccCCCC-CC
Q 001955 744 GLKPHQNLKELTIIRFGGIR-LSSWLSSVTNLTMIDISICIKCQY--IP-ELDQLPSLKRLRLFKLSALEYISSSSP-PS 818 (991)
Q Consensus 744 ~l~~~~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~~~~~~~--lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~-~~ 818 (991)
....+++|+.|.+.++.... .|.++..+++|+.|++++|...+. +| .++.+++|++|++++ +.+....+ ..
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~----N~l~~~~~~~~ 423 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL----NSLNSHAYDRT 423 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT----SCCBSCCSSCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC----CcCCCccChhh
Confidence 00233455566665554433 445555566666666666543321 11 355556666666665 33333222 22
Q ss_pred CCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCC-CccCeeeeccCCCCCCCCCccCCC
Q 001955 819 TTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPF-SKLKSLTIESIDDLETWPEEMMPN 897 (991)
Q Consensus 819 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~ 897 (991)
+..+++|+.|++++|.--.. ....+ ++|+.|++++| .++.+|...+ .
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~------------------------------~~~~l~~~L~~L~L~~N-~l~~ip~~~~-~ 471 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGS------------------------------VFRCLPPKVKVLDLHNN-RIMSIPKDVT-H 471 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGG------------------------------GGSSCCTTCSEEECCSS-CCCCCCTTTT-S
T ss_pred hcCcccCCEEECCCCCCCcc------------------------------hhhhhcCcCCEEECCCC-cCcccChhhc-C
Confidence 34556666666665521110 11233 69999999999 8889988655 8
Q ss_pred CCCccEEEEecCCCCCccccc-CCCCCCCCeEeeecCCC
Q 001955 898 FPSIQNISIELCPKLISLPQR-LNKATTLKTVGIYDCPN 935 (991)
Q Consensus 898 l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~ 935 (991)
+++|+.|++++| .++.+|.. +..+++|+.|++++|+.
T Consensus 472 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 472 LQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999999999 68899987 89999999999999983
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=4.2e-22 Score=228.29 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=101.0
Q ss_pred hhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchh
Q 001955 538 PTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS 617 (991)
Q Consensus 538 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~ 617 (991)
+..+.++++|++|.+.++..... + .+..+++|++|+|++|.++.+| ++.+++|++|++++|. +..+|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-------~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-------T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-- 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-------T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--
T ss_pred ccChhHcCCCCEEEccCCCcccC-------h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--
Confidence 44577889999999888765432 2 3578899999999999998886 8899999999999998 66665
Q ss_pred hhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCC
Q 001955 618 VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 618 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~ 682 (991)
++++++|++|++++|. +..+| ++.+++|++|++++| .+..+| ++.+++|++|++..+..
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCc
Confidence 8899999999999964 55665 889999999999988 455554 78888999998877643
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=7.3e-22 Score=238.90 Aligned_cols=419 Identities=16% Similarity=0.082 Sum_probs=215.4
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~ 596 (991)
+|..++++.+ ..+......+..|..+++|++|.+..+....- .+..|.++++|++|+|++|.++.+|. .|.+
T Consensus 50 lp~~~~~LdL-s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 50 LPFSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCcCCCEEEe-eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc------ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4556677776 44444433345567777777777777654432 24456777777777777777777654 4677
Q ss_pred CCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCc-cccccccccccCcEEeeccccccCcCCcCCCCCCCCCc
Q 001955 597 LKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLV-ELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRT 674 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~ 674 (991)
+++|++|+|++|. +..+|. .++++++|++|+|++|.... .+|..++.+++|++|++++|......|..+..+.+++.
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 7777777777777 555554 46777777777777754322 35666777777777777776433333344444433332
Q ss_pred CC----ccccCCc----CCcc---------------------cccCcccCCc-eeEEcccCC---ch-------------
Q 001955 675 LP----LFMVGRK----TQLS---------------------QLNGLNKLRG-SLRIENLGE---KQ------------- 708 (991)
Q Consensus 675 L~----l~~~~~~----~~~~---------------------~l~~l~~L~~-~l~i~~~~~---~~------------- 708 (991)
+. +..+... .... .+..+..+.. .+....... ..
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 22 1111110 0000 0000010000 000000000 00
Q ss_pred --------------hh----------------------HhhhcccCCCCCceEEEecCCCC----------ccchhHhhh
Q 001955 709 --------------NS----------------------RLANLEAKEGLQSLVLQWDANKT----------VIYIDDALL 742 (991)
Q Consensus 709 --------------~~----------------------~~~~l~~~~~L~~L~l~~~~~~~----------~~~~~~~~l 742 (991)
.. ....+.....++.|.+..+.... ......+..
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 00 00001112223333333221100 000000000
Q ss_pred ---ccCCCCCCcceEEEeeeCCCc---cCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCC
Q 001955 743 ---EGLKPHQNLKELTIIRFGGIR---LSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSP 816 (991)
Q Consensus 743 ---~~l~~~~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~ 816 (991)
......++|+.|.+.++.... .+.....+.+|+.|++..+......+.+..+++|+.+++..+. .......
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~---~~~~~~~ 438 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN---LKQMSEF 438 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE---EESTTSS
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc---ccccccc
Confidence 001122345555544433221 1222335667777777777655555566667777777776532 1111122
Q ss_pred CCCCCCCCccEEeeccccccccccccCCCccccCCCCCC-CCccce--eecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 817 PSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFS-HPLQQT--MMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 817 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~-~~~~~l--~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
..+..+++|+.++++.+.--. .... ....++.+. +.+... ........+..+++|+.|++++| .++.++..
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~-~~~~----~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRV-AFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEE-CCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred ccccccccccccccccccccc-cccc----ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChH
Confidence 333455666666665542111 1000 000111111 111000 00111224567899999999999 78888877
Q ss_pred cCCCCCCccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCCCCCcCCCCCC-----cCeEEEecCc
Q 001955 894 MMPNFPSIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCPNMAILPEGLQ-----LQSLEIIQCP 954 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~~~-----L~~L~i~~c~ 954 (991)
.+.++++|++|+|++| .++.+| ..+..+++|++|++++|......|..+. |+.|++.++|
T Consensus 513 ~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8999999999999999 676665 5688999999999999984444444332 8999998643
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.8e-21 Score=222.94 Aligned_cols=302 Identities=17% Similarity=0.178 Sum_probs=183.5
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKH 599 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 599 (991)
...+++.+ ..+.... . +.+..+++|+.|.+..+..... + +..+++|++|+|++|.++.+| ++++++
T Consensus 42 ~~L~~L~L-s~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~-------~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDC-HNSSITD-M-TGIEKLTGLTKLICTSNNITTL-------D--LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp TTCCEEEC-CSSCCCC-C-TTGGGCTTCSEEECCSSCCSCC-------C--CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred CCCCEEEc-cCCCccc-C-hhhcccCCCCEEEccCCcCCeE-------c--cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 45666766 3333332 2 3577888888888887765431 2 567888888888888888775 778888
Q ss_pred ccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 600 LRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
|++|++++|. +..+| ++++++|++|++++|. +..+| ++.+++|++|++++|..++.+ .++.+++|++|++..
T Consensus 108 L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 8888888887 55565 7788888888888854 44454 778888888888888666665 367778888887765
Q ss_pred cCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeee
Q 001955 680 VGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRF 759 (991)
Q Consensus 680 ~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 759 (991)
+.... +. +..+++|+.|+++.+..... .+..+++|+.|.+.++
T Consensus 180 n~l~~-l~---------------------------l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 180 NKITE-LD---------------------------VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp SCCCC-CC---------------------------CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSS
T ss_pred Cccce-ec---------------------------cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCC
Confidence 53221 00 12334555555555432110 1344567777777777
Q ss_pred CCCccCcccccccccCceeeccccccccCCCCCCCCccceeecc----------ccccceeccCCCCCCCCCCCCccEEe
Q 001955 760 GGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLF----------KLSALEYISSSSPPSTTIFPSLEELR 829 (991)
Q Consensus 760 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~----------~~~~l~~i~~~~~~~~~~~~~L~~L~ 829 (991)
....+| +..+++|+.|++++|...+ +| ++.+++|+.|++. ++..+..+ ..+.+++|+.|+
T Consensus 223 ~l~~ip--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ 292 (457)
T 3bz5_A 223 KLTEID--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF------QAEGCRKIKELD 292 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE------ECTTCTTCCCCC
T ss_pred cccccC--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCcc------cccccccCCEEE
Confidence 666666 5667777777777775443 23 3444555444433 32211111 123567777777
Q ss_pred eccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecC
Q 001955 830 IFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELC 909 (991)
Q Consensus 830 l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 909 (991)
+++|+.+..++.... .+. . ..+..+++|+.|++++| .++.++ +..+++|+.|++++|
T Consensus 293 Ls~n~~l~~l~~~~~--------~L~----~-------L~l~~~~~L~~L~L~~N-~l~~l~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAA--------GIT----E-------LDLSQNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCTTCCEEECTTC--------CCS----C-------CCCTTCTTCCEEECTTC-CCSCCC---CTTCTTCSEEECCSS
T ss_pred CCCCcccceeccCCC--------cce----E-------echhhcccCCEEECCCC-cccccc---cccCCcCcEEECCCC
Confidence 777766655543111 000 0 01334567777777776 455552 566777777777776
Q ss_pred CCCCc
Q 001955 910 PKLIS 914 (991)
Q Consensus 910 ~~l~~ 914 (991)
.++.
T Consensus 350 -~l~~ 353 (457)
T 3bz5_A 350 -HIQD 353 (457)
T ss_dssp -CCCB
T ss_pred -CCCC
Confidence 3443
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=228.27 Aligned_cols=246 Identities=21% Similarity=0.186 Sum_probs=137.0
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccch-hhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPD-SVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~ 622 (991)
++++.|.+.++..... .+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+|. .+++++
T Consensus 32 ~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL------NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCT
T ss_pred CCCcEEECCCCccceE------CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCC
Confidence 4677777776655432 234567777777777777777765 5677777777777777777 556665 357777
Q ss_pred CCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEc
Q 001955 623 NLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIE 702 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~ 702 (991)
+|++|+|++|......|..+.++++|++|++++|......|..++.+++|++|++..+.....
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 167 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI----------------- 167 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-----------------
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-----------------
Confidence 777777777665555566677777777777777744444455677777777776654422110
Q ss_pred ccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCC-CccCcccccccccCceeecc
Q 001955 703 NLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGG-IRLSSWLSSVTNLTMIDISI 781 (991)
Q Consensus 703 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~lp~~l~~l~~L~~L~L~~ 781 (991)
....+..+++|+.|+++.+..... ....+..+++|+.|.+.++.. ..+|.......+|+.|+|++
T Consensus 168 --------~~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 168 --------PTEALSHLHGLIVLRLRHLNINAI------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp --------CHHHHTTCTTCCEEEEESCCCCEE------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred --------ChhHhcccCCCcEEeCCCCcCcEe------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 011123344555666655432110 011223345555555555432 22333333344556666655
Q ss_pred ccccccCC--CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccc
Q 001955 782 CIKCQYIP--ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFAC 833 (991)
Q Consensus 782 ~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~ 833 (991)
|... .+| .+..+++|+.|++++ +.+....+..+..+++|+.|++++|
T Consensus 234 n~l~-~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 234 CNLT-AVPYLAVRHLVYLRFLNLSY----NPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp SCCC-SCCHHHHTTCTTCCEEECCS----SCCCEECTTSCTTCTTCCEEECCSS
T ss_pred Cccc-ccCHHHhcCccccCeeECCC----CcCCccChhhccccccCCEEECCCC
Confidence 5332 333 345555555555555 2232222233444555555555554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.1e-21 Score=217.96 Aligned_cols=301 Identities=17% Similarity=0.192 Sum_probs=226.1
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKH 599 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~ 599 (991)
..++++.+ .+.... ..+.+..+++|++|.+.++..... +. +..+++|++|++++|.++.+| .+..+++
T Consensus 44 ~~L~~L~l-~~~~i~--~~~~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVV-AGEKVA--SIQGIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp TTCSEEEC-CSSCCC--CCTTGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred ccccEEEE-eCCccc--cchhhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 45677877 333322 134588899999999998865542 22 789999999999999999886 5999999
Q ss_pred ccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 600 LRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
|++|++++|. +..+|. +.++++|++|++++|.....++. +..+++|++|++++| .+..++. ++.+++|++|++..
T Consensus 112 L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTT
T ss_pred CCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccC
Confidence 9999999999 777877 99999999999999877766654 899999999999998 4555554 78899999999876
Q ss_pred cCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeee
Q 001955 680 VGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRF 759 (991)
Q Consensus 680 ~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 759 (991)
+.... +.. +..+++|+.+.++.+..... ..+..+++|+.|.+.++
T Consensus 187 n~l~~-~~~--------------------------~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 187 NQIED-ISP--------------------------LASLTSLHYFTAYVNQITDI--------TPVANMTRLNSLKIGNN 231 (347)
T ss_dssp SCCCC-CGG--------------------------GGGCTTCCEEECCSSCCCCC--------GGGGGCTTCCEEECCSS
T ss_pred Ccccc-ccc--------------------------ccCCCccceeecccCCCCCC--------chhhcCCcCCEEEccCC
Confidence 54321 111 23345666666665532111 11345678999999988
Q ss_pred CCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccc
Q 001955 760 GGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGW 839 (991)
Q Consensus 760 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 839 (991)
....++. +..+++|+.|++++|.. ..++.+..+++|++|+++++ .+... ..+..+++|+.|++++|+- ...
T Consensus 232 ~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n----~l~~~--~~~~~l~~L~~L~L~~n~l-~~~ 302 (347)
T 4fmz_A 232 KITDLSP-LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSN----QISDI--SVLNNLSQLNSLFLNNNQL-GNE 302 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS----CCCCC--GGGGGCTTCSEEECCSSCC-CGG
T ss_pred ccCCCcc-hhcCCCCCEEECCCCcc-CCChhHhcCCCcCEEEccCC----ccCCC--hhhcCCCCCCEEECcCCcC-CCc
Confidence 8777776 78899999999999954 44677889999999999984 33322 3466789999999999842 211
Q ss_pred cccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCC
Q 001955 840 WRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCP 910 (991)
Q Consensus 840 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 910 (991)
... .+..+++|+.|++++|+ ++.++. +..+++|++|++++|+
T Consensus 303 ~~~--------------------------~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 DME--------------------------VIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp GHH--------------------------HHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSSCC-
T ss_pred Chh--------------------------HhhccccCCEEEccCCc-cccccC--hhhhhccceeehhhhc
Confidence 110 13468999999999994 676655 6789999999999994
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=227.75 Aligned_cols=295 Identities=16% Similarity=0.148 Sum_probs=198.6
Q ss_pred CcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccc-cccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 652 (991)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.+.+..|..++++++|++|+|++|. +..+|. .+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 5789999999999977 5689999999999999998444557889999999999999964 666665 478999999999
Q ss_pred eccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 653 IESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
+++|......|..+..+++|++|++..+.... + ....+..+++|+.|+++.+...
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~-----------~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--------------I-----------SHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--------------E-----------CTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCccccCChhHccccccCCEEECCCCccce--------------e-----------ChhhccCCCCCCEEECCCCcCc
Confidence 99986555566778889999999886543220 0 0112334556777777766431
Q ss_pred CccchhHhhhccCCCCCCcceEEEeeeCCCccCc-ccccccccCceeeccccccccCC-CCCCCCccceeecccccccee
Q 001955 733 TVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSS-WLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEY 810 (991)
Q Consensus 733 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~ 810 (991)
. ... ..+..+++|+.|.+.++....++. .+..+++|+.|++++|...+.+| ......+|+.|++++ +.
T Consensus 166 ~---~~~---~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----n~ 235 (477)
T 2id5_A 166 S---IPT---EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH----CN 235 (477)
T ss_dssp S---CCH---HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES----SC
T ss_pred c---cCh---hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcC----Cc
Confidence 1 111 112345677777777766655543 45577777778877776665554 334445777777777 33
Q ss_pred ccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCC
Q 001955 811 ISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETW 890 (991)
Q Consensus 811 i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 890 (991)
+.......+..+++|+.|++++|. +..+.. ..+..+++|+.|++++| .+..+
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------------------~~~~~l~~L~~L~L~~n-~l~~~ 287 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG--------------------------SMLHELLRLQEIQLVGG-QLAVV 287 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSC-CCEECT--------------------------TSCTTCTTCCEEECCSS-CCSEE
T ss_pred ccccCHHHhcCccccCeeECCCCc-CCccCh--------------------------hhccccccCCEEECCCC-ccceE
Confidence 332222234567777777777763 222111 12346677778888777 56666
Q ss_pred CCccCCCCCCccEEEEecCCCCCcccc-cCCCCCCCCeEeeecCC
Q 001955 891 PEEMMPNFPSIQNISIELCPKLISLPQ-RLNKATTLKTVGIYDCP 934 (991)
Q Consensus 891 ~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 934 (991)
+...+..+++|+.|+|++| .++.+|. .+..+++|+.|++++|+
T Consensus 288 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 5556777778888888877 5666654 45677778888887777
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.8e-21 Score=213.15 Aligned_cols=234 Identities=22% Similarity=0.314 Sum_probs=172.1
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
..+.++.|+|++|.++.+|..+.++++|++|+|++|. +..+|..++++++|++|+|++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 4688999999999999999999999999999999999 66999999999999999999965 569999999999999999
Q ss_pred eccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 653 IESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
+++|...+.+|..++... + .
T Consensus 157 L~~n~~~~~~p~~~~~~~------~------------------~------------------------------------ 176 (328)
T 4fcg_A 157 IRACPELTELPEPLASTD------A------------------S------------------------------------ 176 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-------------------------C------------------------------------
T ss_pred CCCCCCccccChhHhhcc------c------------------h------------------------------------
Confidence 999877777776543210 0 0
Q ss_pred CccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceecc
Q 001955 733 TVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYIS 812 (991)
Q Consensus 733 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~ 812 (991)
..+..+++|+.|.+.++....+|.++..+++|+.|+|++|...+..+.++.+++|++|++++| .+.
T Consensus 177 ----------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n----~~~ 242 (328)
T 4fcg_A 177 ----------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC----TAL 242 (328)
T ss_dssp ----------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC----TTC
T ss_pred ----------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC----cch
Confidence 001123456666666666667888888888899999988866544445666666666666663 222
Q ss_pred CCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCC
Q 001955 813 SSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPE 892 (991)
Q Consensus 813 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 892 (991)
...+..++ .+++|+.|++++|..+..+|.
T Consensus 243 ~~~p~~~~---------------------------------------------------~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 243 RNYPPIFG---------------------------------------------------GRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CBCCCCTT---------------------------------------------------CCCCCCEEECTTCTTCCBCCT
T ss_pred hhhHHHhc---------------------------------------------------CCCCCCEEECCCCCchhhcch
Confidence 22233333 345555555555555555555
Q ss_pred ccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 893 EMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 893 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
.+..+++|+.|+|++|+.++.+|..+.++++|+.+++..+.
T Consensus 272 -~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 272 -DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred -hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 36678888888888888888888888888888888876543
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.7e-21 Score=217.21 Aligned_cols=303 Identities=15% Similarity=0.139 Sum_probs=222.9
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~ 598 (991)
...+.+.+ .........+..+..+++|++|.+.++..... .+..+..+++|++|+|++|.+..+| ..+++++
T Consensus 45 ~~l~~l~l-~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEE-ESCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEe-cCCchhhCChhHhcccccCcEEECCCCccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 45677777 33333222233468899999999998866543 3456789999999999999999875 5689999
Q ss_pred CccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCc
Q 001955 599 HLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l 677 (991)
+|++|++++|. +..+|.. ++++++|++|++++|......|..+.++++|++|++++| .+..++ ++.+++|+.|++
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANV 193 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCTTCSEEEC
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc--cccccccceeec
Confidence 99999999999 7788886 489999999999997655555667999999999999998 444543 566788888887
Q ss_pred cccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEe
Q 001955 678 FMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTII 757 (991)
Q Consensus 678 ~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 757 (991)
..+... . +....+|+.|+++.+..... .....++|+.|.+.
T Consensus 194 ~~n~l~----~--------------------------~~~~~~L~~L~l~~n~l~~~---------~~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 194 SYNLLS----T--------------------------LAIPIAVEELDASHNSINVV---------RGPVNVELTILKLQ 234 (390)
T ss_dssp CSSCCS----E--------------------------EECCSSCSEEECCSSCCCEE---------ECCCCSSCCEEECC
T ss_pred cccccc----c--------------------------cCCCCcceEEECCCCeeeec---------cccccccccEEECC
Confidence 554221 1 11123566666665532110 01124689999999
Q ss_pred eeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeecccccc
Q 001955 758 RFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPEL 836 (991)
Q Consensus 758 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L 836 (991)
++..... .++..+++|+.|++++|...+..| .+..+++|++|+++++ .+.. .+.....+|+|+.|++++| .+
T Consensus 235 ~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~~l~~L~~L~L~~n-~l 307 (390)
T 3o6n_A 235 HNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN----RLVA-LNLYGQPIPTLKVLDLSHN-HL 307 (390)
T ss_dssp SSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS----CCCE-EECSSSCCTTCCEEECCSS-CC
T ss_pred CCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC----cCcc-cCcccCCCCCCCEEECCCC-cc
Confidence 8877665 578899999999999997766545 6888999999999983 3322 2334467899999999998 34
Q ss_pred ccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCC
Q 001955 837 KGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCP 910 (991)
Q Consensus 837 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 910 (991)
..++. .+..+++|+.|++++| .++.++ +..+++|+.|++++|+
T Consensus 308 ~~~~~---------------------------~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 308 LHVER---------------------------NQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCGG---------------------------GHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSC
T ss_pred eecCc---------------------------cccccCcCCEEECCCC-ccceeC---chhhccCCEEEcCCCC
Confidence 33321 1236789999999999 566665 5678999999999995
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.7e-21 Score=229.45 Aligned_cols=303 Identities=16% Similarity=0.154 Sum_probs=223.2
Q ss_pred ceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCC
Q 001955 521 RTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKH 599 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~ 599 (991)
..+.+.+ .+.......+..+..+++|++|.+.++..... .+..|..+++|++|+|++|.++.+|+ .|+++++
T Consensus 52 ~l~~l~l-~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 52 NQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCSEEEE-SSCEESEECTHHHHHCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CceEEEe-eCCCCCCcCHHHHccCCCCcEEECCCCCCCCC------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 4455655 33322222233467899999999998876543 34567899999999999999998754 6799999
Q ss_pred ccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCcc
Q 001955 600 LRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLF 678 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~ 678 (991)
|++|+|++|. +..+|.. ++++++|++|+|++|......|..++++++|++|++++| .+..+| ++.+++|+.|++.
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVS 200 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECC
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcc
Confidence 9999999999 7788876 589999999999998765556667999999999999998 455554 5667888888875
Q ss_pred ccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEee
Q 001955 679 MVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIR 758 (991)
Q Consensus 679 ~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 758 (991)
.+... . +....+|+.|+++.+..... .. ..+++|+.|.+.+
T Consensus 201 ~n~l~----~--------------------------l~~~~~L~~L~ls~n~l~~~--------~~-~~~~~L~~L~L~~ 241 (597)
T 3oja_B 201 YNLLS----T--------------------------LAIPIAVEELDASHNSINVV--------RG-PVNVELTILKLQH 241 (597)
T ss_dssp SSCCS----E--------------------------EECCTTCSEEECCSSCCCEE--------EC-SCCSCCCEEECCS
T ss_pred cCccc----c--------------------------ccCCchhheeeccCCccccc--------cc-ccCCCCCEEECCC
Confidence 54221 1 11223566666665542110 11 1236899999998
Q ss_pred eCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccc
Q 001955 759 FGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELK 837 (991)
Q Consensus 759 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~ 837 (991)
+.... +.++..+++|+.|+|++|...+..| .++.+++|+.|++++ +.+.. .+.....+|+|+.|++++|. +.
T Consensus 242 n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~----N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~ 314 (597)
T 3oja_B 242 NNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN----NRLVA-LNLYGQPIPTLKVLDLSHNH-LL 314 (597)
T ss_dssp SCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT----SCCCE-EECSSSCCTTCCEEECCSSC-CC
T ss_pred CCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC----CCCCC-CCcccccCCCCcEEECCCCC-CC
Confidence 87665 4678899999999999998776655 688999999999998 33332 24445679999999999983 22
Q ss_pred cccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCC
Q 001955 838 GWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPK 911 (991)
Q Consensus 838 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~ 911 (991)
.++. .+..+++|+.|++++| .+..++ +..+++|+.|+|++|+.
T Consensus 315 ~i~~---------------------------~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 315 HVER---------------------------NQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCGG---------------------------GHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSCE
T ss_pred ccCc---------------------------ccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEEEeeCCCC
Confidence 2221 1346799999999999 566665 56789999999999963
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=1.5e-20 Score=215.10 Aligned_cols=341 Identities=18% Similarity=0.161 Sum_probs=190.2
Q ss_pred eEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCc-------------ccEEEccCCCcc
Q 001955 522 THHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKC-------------LRTLNLSNSEIE 588 (991)
Q Consensus 522 ~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------------L~~L~L~~~~i~ 588 (991)
.+.+.+ .++.. ..+|..+.++++|+.|.+..+...+. .+..++++++ ++.|++++|.++
T Consensus 13 L~~L~l-~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~------~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 13 LQEPLR-HSSNL-TEMPVEAENVKSKTEYYNAWSEWERN------APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHT------SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred chhhhc-ccCch-hhCChhHhcccchhhhhccCCccccc------CCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 444554 33333 45678888999999988876643322 2333444444 588999999888
Q ss_pred ccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCC
Q 001955 589 TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQ 668 (991)
Q Consensus 589 ~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~ 668 (991)
.+|.. .++|++|++++|. +..+|.. +.+|++|++++|. +..+|... ++|++|++++| .+..+| .+++
T Consensus 85 ~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n-~l~~lp-~~~~ 151 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNN-QLEKLP-ELQN 151 (454)
T ss_dssp CCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSS-CCSSCC-CCTT
T ss_pred cCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCC-CCCCCc-ccCC
Confidence 88763 3688999999888 5568763 4788888988854 45555321 68888898888 455677 5888
Q ss_pred CCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCC-C
Q 001955 669 LTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLK-P 747 (991)
Q Consensus 669 L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~ 747 (991)
+++|++|++..+.......... +|+ .+.+.+..-.. ...+..+++|+.|+++.+... ++. .
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~---~L~-~L~L~~n~l~~---l~~~~~l~~L~~L~l~~N~l~-----------~l~~~ 213 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPP---SLE-FIAAGNNQLEE---LPELQNLPFLTAIYADNNSLK-----------KLPDL 213 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCT---TCC-EEECCSSCCSS---CCCCTTCTTCCEEECCSSCCS-----------SCCCC
T ss_pred CCCCCEEECCCCcCcccCCCcc---ccc-EEECcCCcCCc---CccccCCCCCCEEECCCCcCC-----------cCCCC
Confidence 8888888887775543212222 233 33333221111 123566677777777765421 111 1
Q ss_pred CCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccE
Q 001955 748 HQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEE 827 (991)
Q Consensus 748 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~ 827 (991)
+++|+.|.+.++....+|. +..+++|+.|++++|... .+|.. +++|+.|++++ +.+.. .+. .+++|+.
T Consensus 214 ~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~----N~l~~-l~~---~~~~L~~ 281 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPDL--PPSLEALNVRD----NYLTD-LPE---LPQSLTF 281 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCSC--CTTCCEEECCS----SCCSC-CCC---CCTTCCE
T ss_pred cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC-ccccc--ccccCEEECCC----Ccccc-cCc---ccCcCCE
Confidence 2478888888877777774 677888888888887544 35532 37788888877 33322 111 2467788
Q ss_pred EeeccccccccccccCCCccccCCCCCCCCccceeecccCCC-CCCC-CccCeeeeccCCCCCCCCCccCCCCCCccEEE
Q 001955 828 LRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTA-EPPF-SKLKSLTIESIDDLETWPEEMMPNFPSIQNIS 905 (991)
Q Consensus 828 L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~l-~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 905 (991)
|++++|. +..++.. ...++.+.+..+... +..+ ++|+.|++++| .++.+|. .+++|+.|+
T Consensus 282 L~ls~N~-l~~l~~~------------~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~ 343 (454)
T 1jl5_A 282 LDVSENI-FSGLSEL------------PPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA----LPPRLERLI 343 (454)
T ss_dssp EECCSSC-CSEESCC------------CTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEE
T ss_pred EECcCCc-cCcccCc------------CCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc----cCCcCCEEE
Confidence 8877763 2222110 001112222211110 1122 36666666665 4555554 246666777
Q ss_pred EecCCCCCcccccCCCCCCCCeEeeecCCC
Q 001955 906 IELCPKLISLPQRLNKATTLKTVGIYDCPN 935 (991)
Q Consensus 906 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 935 (991)
+++| .++.+|. .+++|++|++++|+.
T Consensus 344 L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 344 ASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CCCC-ccccccc---hhhhccEEECCCCCC
Confidence 7666 4556665 356666777766663
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=9e-20 Score=220.53 Aligned_cols=416 Identities=18% Similarity=0.146 Sum_probs=254.3
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccch-hhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPD-SVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~ 622 (991)
.+++.|.+..+....- .+..|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|. +..+|. .+.+++
T Consensus 52 ~~~~~LdLs~N~i~~l------~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCT
T ss_pred cCCCEEEeeCCCCCCC------CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCC
Confidence 4799999999876543 35568999999999999999998865 69999999999999999 777775 589999
Q ss_pred CCCEEeCCCCCCCccccc-cccccccCcEEeeccccccC-cCCcCCCCCCCCCcCCccccCCcC----CcccccCcccCC
Q 001955 623 NLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLT-DMPNGLGQLTNLRTLPLFMVGRKT----QLSQLNGLNKLR 696 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~l~~L~~L~~L~l~~~~~~~----~~~~l~~l~~L~ 696 (991)
+|++|+|++|. +..+|. .+++|++|++|++++|.... .+|..++.+++|++|++..+.... .+..+..+..+.
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 99999999975 556664 58999999999999985432 457788999999999998876541 222222222111
Q ss_pred ceeEEcc---------------------cCCc--hhhHhhhcccCCCCCceEEEecCCC---------------------
Q 001955 697 GSLRIEN---------------------LGEK--QNSRLANLEAKEGLQSLVLQWDANK--------------------- 732 (991)
Q Consensus 697 ~~l~i~~---------------------~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~--------------------- 732 (991)
..+.+.. ..+. .......+..+..++...+......
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 0111000 0000 0111111222333332222211000
Q ss_pred -------------------------CccchhHh---hhccCCCCCCcceEEEeeeCCCccCc------------------
Q 001955 733 -------------------------TVIYIDDA---LLEGLKPHQNLKELTIIRFGGIRLSS------------------ 766 (991)
Q Consensus 733 -------------------------~~~~~~~~---~l~~l~~~~~L~~L~l~~~~~~~lp~------------------ 766 (991)
..+..... ....+....+++.|.+.++....++.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 00000000 00111222355566655543322221
Q ss_pred --ccccccccCceeecccccccc--CC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccc
Q 001955 767 --WLSSVTNLTMIDISICIKCQY--IP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWR 841 (991)
Q Consensus 767 --~l~~l~~L~~L~L~~~~~~~~--lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 841 (991)
....+++|+.|++++|..... .+ ....+.+|++|++..+... . ....+..+++|+.+++..+........
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~----~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-T----MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-E----ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-c----ccccccccccccchhhhhccccccccc
Confidence 122567888888888754322 22 2445688999998874321 1 223455789999999987754443221
Q ss_pred cCCCccccCCCCCC-CCccceeec-ccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcc-ccc
Q 001955 842 TDGSTTQTAEPPFS-HPLQQTMMR-TTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISL-PQR 918 (991)
Q Consensus 842 ~~~~~~~~~~~~l~-~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l-p~~ 918 (991)
.. ...+..+. ..+....+. .....+..+++|+.|++++|.....++...+..+++|+.|+|++| .++.+ |..
T Consensus 439 ~~----~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~ 513 (635)
T 4g8a_A 439 SV----FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 513 (635)
T ss_dssp CT----TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred cc----cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHH
Confidence 11 01111111 111111111 112235678999999999997777666667899999999999999 56665 677
Q ss_pred CCCCCCCCeEeeecCCCCCcCCCCC-C----cCeEEEecCcchhhhhcCCCCCCCCCC-CCCCeEEEcCccc
Q 001955 919 LNKATTLKTVGIYDCPNMAILPEGL-Q----LQSLEIIQCPQLSERCGNNMAVDWPKI-AHIPNIRIDNDLI 984 (991)
Q Consensus 919 l~~l~~L~~L~l~~c~~l~~lp~~~-~----L~~L~i~~c~~L~~~~~~~~~~~~~~i-~~i~~~~~~~~~~ 984 (991)
+..+++|++|++++|. +..+|... . |+.|+++++. ++.... .....+ .++..+.+.++.+
T Consensus 514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK----QELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC-CCBCCS----SCTTCCCTTCCEEECTTCCB
T ss_pred HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc-CCCCCH----HHHHhhhCcCCEEEeeCCCC
Confidence 8999999999999996 77776542 2 9999999874 221111 111222 4566677766554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.6e-21 Score=212.35 Aligned_cols=252 Identities=14% Similarity=0.174 Sum_probs=143.6
Q ss_pred CcccEEEccCCCcc---ccCccccCCCCccEEEccC-CCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 575 KCLRTLNLSNSEIE---TVPSLIGKLKHLRYFNLSH-NADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 575 ~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
.+++.|+|++|.+. .+|..+.++++|++|++++ |.+.+.+|..++++++|++|+|++|...+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45677777777776 4677777777777777774 6655567777777777777777776554567777777777777
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecC
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDA 730 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 730 (991)
|++++|.....+|..++.+++|++|++..+... +
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-------------~--------------------------------- 163 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-------------G--------------------------------- 163 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-------------E---------------------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCccc-------------C---------------------------------
Confidence 777777544456666666666666655332211 0
Q ss_pred CCCccchhHhhhccCCCCCCcceEEEeeeCCCccCccccccc-ccCceeeccccccccCC-CCCCCCccceeeccccccc
Q 001955 731 NKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVT-NLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSAL 808 (991)
Q Consensus 731 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l 808 (991)
.+|..+..++ +|+.|++++|...+.+| .++.++ |++|++++
T Consensus 164 --------------------------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~---- 206 (313)
T 1ogq_A 164 --------------------------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR---- 206 (313)
T ss_dssp --------------------------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS----
T ss_pred --------------------------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC----
Confidence 1122222222 33444444433332222 222222 44444444
Q ss_pred eeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCC
Q 001955 809 EYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLE 888 (991)
Q Consensus 809 ~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 888 (991)
+.+....+..+..+++|+.|++++|.--...+ .+..+++|++|++++| .++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------~~~~l~~L~~L~Ls~N-~l~ 257 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----------------------------KVGLSKNLNGLDLRNN-RIY 257 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGG----------------------------GCCCCTTCCEEECCSS-CCE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecC----------------------------cccccCCCCEEECcCC-ccc
Confidence 23322233333444555555554442110000 0224566677777766 344
Q ss_pred -CCCCccCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcCC
Q 001955 889 -TWPEEMMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAILP 940 (991)
Q Consensus 889 -~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 940 (991)
.+|. .+..+++|+.|++++|+..+.+|.. ..+++|+.|++++|+.+...|
T Consensus 258 ~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 258 GTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCh-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 4444 5677888888888888555577765 778888888888888554433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=5.6e-20 Score=202.48 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=152.6
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCcccc-chhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSL-PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
++++++++++.++.+|..+. ++|++|++++|. +..+ |..++++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 35555555555555554442 455555555555 3333 3345555555555555543333334455555555555555
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+|..+. ++|++|++..+....... ..+..+++|+.|+++.+....
T Consensus 111 ~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~- 161 (332)
T 2ft3_A 111 KN-HLVEIPPNLP--SSLVELRIHDNRIRKVPK-------------------------GVFSGLRNMNCIEMGGNPLEN- 161 (332)
T ss_dssp SS-CCCSCCSSCC--TTCCEEECCSSCCCCCCS-------------------------GGGSSCSSCCEEECCSCCCBG-
T ss_pred CC-cCCccCcccc--ccCCEEECCCCccCccCH-------------------------hHhCCCccCCEEECCCCcccc-
Confidence 54 3344454443 455555543332210000 001122333333333322100
Q ss_pred cchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccC
Q 001955 735 IYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 735 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
.......+... +|+.|.+.++....+|..+. ++|+.|++++|......+ .+..+++|+.|++++ +.+..
T Consensus 162 ---~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~----N~l~~ 231 (332)
T 2ft3_A 162 ---SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH----NQIRM 231 (332)
T ss_dssp ---GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS----SCCCC
T ss_pred ---CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC----CcCCc
Confidence 00000111122 56666666666666665543 678888888886555443 577788888888887 45544
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
..+..+..+++|+.|++++| .+..++. .+..+++|+.|++++| .++.++..
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~---------------------------~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNN-KLSRVPA---------------------------GLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSS-CCCBCCT---------------------------TGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred CChhHhhCCCCCCEEECCCC-cCeecCh---------------------------hhhcCccCCEEECCCC-CCCccChh
Confidence 44445667788888888777 2222211 1346777888888877 56666655
Q ss_pred cCCC------CCCccEEEEecCCCC--CcccccCCCCCCCCeEeeecCC
Q 001955 894 MMPN------FPSIQNISIELCPKL--ISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 894 ~~~~------l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
.+.. +++|+.|++++|+.. ...|..+..+++|+.|++++|.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4443 467888888888644 3445667778888888887775
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.2e-19 Score=199.82 Aligned_cols=288 Identities=17% Similarity=0.146 Sum_probs=137.2
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
++++++++++.++.+|..+. ++|++|++++|. +..+|. .++++++|++|+|++|......|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45566666666655555443 455666666665 333333 45566666666666544333335556666666666665
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+|..+. ++|++|++..+..... ....+..+++|+.|+++.+....
T Consensus 109 ~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~-------------------------~~~~~~~l~~L~~L~l~~n~l~~- 159 (330)
T 1xku_A 109 KN-QLKELPEKMP--KTLQELRVHENEITKV-------------------------RKSVFNGLNQMIVVELGTNPLKS- 159 (330)
T ss_dssp SS-CCSBCCSSCC--TTCCEEECCSSCCCBB-------------------------CHHHHTTCTTCCEEECCSSCCCG-
T ss_pred CC-cCCccChhhc--ccccEEECCCCccccc-------------------------CHhHhcCCccccEEECCCCcCCc-
Confidence 55 3445554443 4555555533321100 00011222333444443332100
Q ss_pred cchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccC
Q 001955 735 IYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 735 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
.......+...++|+.|.+.++....+|..+. ++|+.|++++|......| .+..+++|++|++++ +.+..
T Consensus 160 ---~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~ 230 (330)
T 1xku_A 160 ---SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF----NSISA 230 (330)
T ss_dssp ---GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS----SCCCE
T ss_pred ---cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC----CcCce
Confidence 00001112223455555555555555554432 566666666665443322 455666666666665 33333
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
..+..+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.++..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~---------------------------~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNN-KLVKVPG---------------------------GLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSS-CCSSCCT---------------------------TTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred eChhhccCCCCCCEEECCCC-cCccCCh---------------------------hhccCCCcCEEECCCC-cCCccChh
Confidence 23334445666666666655 2221111 1234566666666665 45555544
Q ss_pred cCCC------CCCccEEEEecCCCCC--cccccCCCCCCCCeEeeecC
Q 001955 894 MMPN------FPSIQNISIELCPKLI--SLPQRLNKATTLKTVGIYDC 933 (991)
Q Consensus 894 ~~~~------l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 933 (991)
.+.. .++|+.|++++|+... ..|..+..+++|+.+++++|
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3321 3556666666665321 22345555666666666655
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.3e-19 Score=205.29 Aligned_cols=297 Identities=23% Similarity=0.243 Sum_probs=147.7
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
++|++|++++|.++.+|... ++|++|++++|. +..+| +++++++|++|++++|. +..+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCCC---CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECc
Confidence 55566666666555544321 456666666665 44455 35566666666666543 33455432 355666665
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+| .++++++|++|++..+......... .+|+ .+.+.+..-. ....+..+++|+.|+++.+...
T Consensus 182 ~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~-~L~l~~n~l~---~lp~~~~l~~L~~L~l~~N~l~-- 250 (454)
T 1jl5_A 182 NN-QLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE-SIVAGNNILE---ELPELQNLPFLTTIYADNNLLK-- 250 (454)
T ss_dssp SS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC-EEECCSSCCS---SCCCCTTCTTCCEEECCSSCCS--
T ss_pred CC-cCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc-EEECcCCcCC---cccccCCCCCCCEEECCCCcCC--
Confidence 55 334444 4555666666655544332110000 1111 2222211100 0112344556666666655321
Q ss_pred cchhHhhhccCC-CCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccC
Q 001955 735 IYIDDALLEGLK-PHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 735 ~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
++. .+++|+.|.+.++....+|.+ +++|+.|++++|...+ +|.+. ++|++|++++ +.+..
T Consensus 251 ---------~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~~--~~L~~L~l~~----N~l~~ 311 (454)
T 1jl5_A 251 ---------TLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSELP--PNLYYLNASS----NEIRS 311 (454)
T ss_dssp ---------SCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCCC--TTCCEEECCS----SCCSE
T ss_pred ---------cccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCcC--CcCCEEECcC----CcCCc
Confidence 111 135777777777766666654 3677888888775433 33222 5778888876 33321
Q ss_pred CCCCCCCCC-CCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCC
Q 001955 814 SSPPSTTIF-PSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPE 892 (991)
Q Consensus 814 ~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 892 (991)
+..+ ++|+.|++++|. +..++ ..+++|+.|++++| .++.+|.
T Consensus 312 -----i~~~~~~L~~L~Ls~N~-l~~lp------------------------------~~~~~L~~L~L~~N-~l~~lp~ 354 (454)
T 1jl5_A 312 -----LCDLPPSLEELNVSNNK-LIELP------------------------------ALPPRLERLIASFN-HLAEVPE 354 (454)
T ss_dssp -----ECCCCTTCCEEECCSSC-CSCCC------------------------------CCCTTCCEEECCSS-CCSCCCC
T ss_pred -----ccCCcCcCCEEECCCCc-ccccc------------------------------ccCCcCCEEECCCC-ccccccc
Confidence 1122 478888887762 22211 13588999999998 6778876
Q ss_pred ccCCCCCCccEEEEecCCCCC--cccccCCCC-------------CCCCeEeeecCCCCC--cCCCCCCcCeEEEecC
Q 001955 893 EMMPNFPSIQNISIELCPKLI--SLPQRLNKA-------------TTLKTVGIYDCPNMA--ILPEGLQLQSLEIIQC 953 (991)
Q Consensus 893 ~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~~l~--~lp~~~~L~~L~i~~c 953 (991)
.+++|+.|++++|+..+ .+|..+..+ ++|+.|++++|+..+ .+|.. ++.|.+.+|
T Consensus 355 ----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s--l~~L~~~~~ 426 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES--VEDLRMNSE 426 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred ----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh--HhheeCcCc
Confidence 47899999999996555 577777777 889999999988433 55544 566677665
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.5e-19 Score=198.05 Aligned_cols=125 Identities=20% Similarity=0.420 Sum_probs=101.3
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccC
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLN 623 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~ 623 (991)
..+++.|.+.++.... ++..+.++++|++|+|++|.+..+|..++++++|++|+|++|. +..+|..++++++
T Consensus 80 ~~~l~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSS-------CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTT
T ss_pred ccceeEEEccCCCchh-------cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcC
Confidence 4667777777765542 2344567999999999999999999999999999999999998 6699999999999
Q ss_pred CCEEeCCCCCCCccccccccc---------cccCcEEeeccccccCcCCcCCCCCCCCCcCCc
Q 001955 624 LQTLDLSCCDDLVELPRDIGK---------MVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 624 L~~L~L~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l 677 (991)
|++|++++|+..+.+|..++. +++|++|++++| .+..+|..++.+++|++|++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEE
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEc
Confidence 999999999999999988765 888888888887 44466666666655555554
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=5.6e-20 Score=200.18 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=97.1
Q ss_pred CceEEEEEEecCCCCC--cchhhhhcCCCCcEEEecc-cCCCcccchhhHhhhhhccCCcccEEEccCCCcc-ccCcccc
Q 001955 520 ERTHHISCVSGFDSSL--EFPTALLRAKNLRTFLSTV-YSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE-TVPSLIG 595 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~--~~~~~~~~~~~Lr~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~-~lp~~~~ 595 (991)
.+++++.+ ....... ..|..+..+++|++|.+.+ +..... .+..+.++++|++|+|++|.+. .+|..+.
T Consensus 50 ~~l~~L~L-~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP------IPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEE-ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC------CCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEEC-CCCCccCCcccChhHhCCCCCCeeeCCCCCccccc------CChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 45666666 4444443 4566677777777777663 433222 2344566777777777777776 5666677
Q ss_pred CCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccc-cCcEEeeccccccCcCCcCCCCCCCCCc
Q 001955 596 KLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMV-SLRHLAIESCLSLTDMPNGLGQLTNLRT 674 (991)
Q Consensus 596 ~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~lp~~l~~L~~L~~ 674 (991)
++++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..++.++ +|++|++++|.....+|..++.++ |++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 777777777777764446777777777777777777654446777777776 777777777655446666666665 666
Q ss_pred CCcccc
Q 001955 675 LPLFMV 680 (991)
Q Consensus 675 L~l~~~ 680 (991)
|++..+
T Consensus 202 L~Ls~N 207 (313)
T 1ogq_A 202 VDLSRN 207 (313)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 666443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4e-18 Score=200.81 Aligned_cols=260 Identities=23% Similarity=0.230 Sum_probs=185.3
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
.++++|++++|.++.+|..+. ++|++|+|++|. +..+|. .+++|++|+|++|. +..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 357888888888888887665 788888888887 677777 57788888888854 667776 67888888888
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+|. .+++|+.|++..+.... +. ..+++|+.|+++.+...
T Consensus 110 ~N-~l~~l~~---~l~~L~~L~L~~N~l~~----------lp-------------------~~l~~L~~L~Ls~N~l~-- 154 (622)
T 3g06_A 110 SN-PLTHLPA---LPSGLCKLWIFGNQLTS----------LP-------------------VLPPGLQELSVSDNQLA-- 154 (622)
T ss_dssp SC-CCCCCCC---CCTTCCEEECCSSCCSC----------CC-------------------CCCTTCCEEECCSSCCS--
T ss_pred CC-cCCCCCC---CCCCcCEEECCCCCCCc----------CC-------------------CCCCCCCEEECcCCcCC--
Confidence 87 5566666 46677777775543221 10 01245666666655321
Q ss_pred cchhHhhhccC-CCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccC
Q 001955 735 IYIDDALLEGL-KPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 735 ~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
.+ ..+++|+.|.+.++....+| ..+++|+.|++++|... .+|. .+++|+.|++++ +.+..
T Consensus 155 ---------~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~l~~--~~~~L~~L~L~~----N~l~~ 215 (622)
T 3g06_A 155 ---------SLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-SLPT--LPSELYKLWAYN----NRLTS 215 (622)
T ss_dssp ---------CCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCS----SCCSS
T ss_pred ---------CcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-CCCC--ccchhhEEECcC----Ccccc
Confidence 11 12367888888888877777 45788999999998654 4554 247899999988 33332
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
++ ..+++|+.|++++| .+..++ ..+++|+.|++++| .++.+|.
T Consensus 216 -l~---~~~~~L~~L~Ls~N-~L~~lp------------------------------~~l~~L~~L~Ls~N-~L~~lp~- 258 (622)
T 3g06_A 216 -LP---ALPSGLKELIVSGN-RLTSLP------------------------------VLPSELKELMVSGN-RLTSLPM- 258 (622)
T ss_dssp -CC---CCCTTCCEEECCSS-CCSCCC------------------------------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred -cC---CCCCCCCEEEccCC-ccCcCC------------------------------CCCCcCcEEECCCC-CCCcCCc-
Confidence 12 13588999999887 333221 24688999999998 7888876
Q ss_pred cCCCCCCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCCCCcC
Q 001955 894 MMPNFPSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPNMAIL 939 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 939 (991)
.+++|+.|++++| .++.+|..+.++++|+.|++++|+..+..
T Consensus 259 ---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 259 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp ---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred ---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 5789999999999 77899998999999999999999854433
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=8e-18 Score=185.08 Aligned_cols=273 Identities=17% Similarity=0.147 Sum_probs=173.6
Q ss_pred CcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 575 KCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
+.|++|+|++|.++.++. .|.++++|++|+|++|.+.+..|..++++++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 567777777777776654 6777777777777777733334667777777777777774 3556776554 67777777
Q ss_pred ccccccCcCC-cCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 654 ESCLSLTDMP-NGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 654 ~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
++|. +..++ ..+.++++|++|++..+..... ......+..+++|+.|+++.+...
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-----------------------GIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-----------------------GBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcCCcc-----------------------CcChhhccCCCCcCEEECCCCccc
Confidence 7773 33443 3467777777777755432200 000112233445556665554321
Q ss_pred CccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccccCC-CCCCCCccceeecccccccee
Q 001955 733 TVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEY 810 (991)
Q Consensus 733 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~ 810 (991)
.. ... ..++|+.|.+.++....+ |.++..+++|+.|+|++|......+ .+..+++|++|++++ +.
T Consensus 185 ~l-------~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----N~ 251 (330)
T 1xku_A 185 TI-------PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN----NK 251 (330)
T ss_dssp SC-------CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS----SC
T ss_pred cC-------Ccc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC----Cc
Confidence 10 001 126788888888776655 5678889999999999997665544 588889999999998 44
Q ss_pred ccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCC-CC
Q 001955 811 ISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDL-ET 889 (991)
Q Consensus 811 i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l-~~ 889 (991)
+. ..+..+..+++|+.|++++|+ +..+..... |+. .....++.|+.|++.+++-. ..
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f------~~~--------------~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDF------CPP--------------GYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSS------SCS--------------SCCTTSCCCSEEECCSSSSCGGG
T ss_pred Cc-cCChhhccCCCcCEEECCCCc-CCccChhhc------CCc--------------ccccccccccceEeecCcccccc
Confidence 43 445567788999999999873 333221110 000 00124578899999998642 23
Q ss_pred CCCccCCCCCCccEEEEecC
Q 001955 890 WPEEMMPNFPSIQNISIELC 909 (991)
Q Consensus 890 l~~~~~~~l~~L~~L~l~~c 909 (991)
++...+..+++|+.+++++|
T Consensus 310 i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGGGEEC---
T ss_pred cCccccccccceeEEEeccc
Confidence 55567888999999999987
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=6.6e-18 Score=183.63 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=52.6
Q ss_pred CcccEEEccCCCccccCcc-ccCCCCccEEEccCCCCcccc---chhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 575 KCLRTLNLSNSEIETVPSL-IGKLKHLRYFNLSHNADIKSL---PDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~~l---P~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
++|++|+|++|.++.+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 4667777777777766653 5677777777777776 3332 556666777777777764 34566666667777777
Q ss_pred Eeeccc
Q 001955 651 LAIESC 656 (991)
Q Consensus 651 L~l~~~ 656 (991)
|++++|
T Consensus 106 L~l~~n 111 (306)
T 2z66_A 106 LDFQHS 111 (306)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 777666
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=1.1e-17 Score=184.03 Aligned_cols=273 Identities=16% Similarity=0.098 Sum_probs=160.5
Q ss_pred CcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 575 KCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
++|++|+|++|.+..++ ..|.++++|++|++++|.+.+..|..++++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 45666777776666553 35666677777777766633333556666777777777664 3456665554 56777777
Q ss_pred ccccccCcCCc-CCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 654 ESCLSLTDMPN-GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 654 ~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
++| .+..+|. .++.+++|++|++..+..... + .....+..+ +|+.|+++.+...
T Consensus 131 ~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~-------------------~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 131 HDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS----G-------------------FEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG----G-------------------SCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCC-ccCccCHhHhCCCccCCEEECCCCccccC----C-------------------CCcccccCC-ccCEEECcCCCCC
Confidence 666 3344443 356666676666654432100 0 000001111 3344444333211
Q ss_pred CccchhHhhhccCCCCCCcceEEEeeeCCCccC-cccccccccCceeeccccccccCC-CCCCCCccceeecccccccee
Q 001955 733 TVIYIDDALLEGLKPHQNLKELTIIRFGGIRLS-SWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEY 810 (991)
Q Consensus 733 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~ 810 (991)
. .... ..++|+.|.+.++....++ ..+..+++|+.|+|++|......+ .+..+++|++|++++ +.
T Consensus 186 ~-------l~~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~----N~ 252 (332)
T 2ft3_A 186 G-------IPKD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN----NK 252 (332)
T ss_dssp S-------CCSS--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS----SC
T ss_pred c-------cCcc--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC----Cc
Confidence 0 0000 1256777777777666655 567788999999999987655544 578889999999988 44
Q ss_pred ccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCC-CC
Q 001955 811 ISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDL-ET 889 (991)
Q Consensus 811 i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l-~~ 889 (991)
+. ..+..+..+++|+.|++++++ +..+........ .....+++|+.|++.+++.. ..
T Consensus 253 l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~--------------------~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 253 LS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV--------------------GFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS--------------------SCCSSSCCBSEEECCSSSSCGGG
T ss_pred Ce-ecChhhhcCccCCEEECCCCC-CCccChhHcccc--------------------ccccccccccceEeecCcccccc
Confidence 43 445556788999999998873 333322111000 00123678999999998632 14
Q ss_pred CCCccCCCCCCccEEEEecCC
Q 001955 890 WPEEMMPNFPSIQNISIELCP 910 (991)
Q Consensus 890 l~~~~~~~l~~L~~L~l~~c~ 910 (991)
++...+..+++|+.|++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 566678889999999999885
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.9e-17 Score=190.46 Aligned_cols=243 Identities=20% Similarity=0.239 Sum_probs=130.5
Q ss_pred ccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccc
Q 001955 577 LRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 577 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 656 (991)
.+.++.++..++.+|..+. ++|++|+|++|.+.+..|..++++++|++|+|++|......|..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3556666666666665543 46677777766633333556666777777777665433333455666677777777666
Q ss_pred cccCcCCcC-CCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCcc
Q 001955 657 LSLTDMPNG-LGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVI 735 (991)
Q Consensus 657 ~~~~~lp~~-l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 735 (991)
.+..+|.. ++.+++|++|++..+.... +. ...+..+
T Consensus 134 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~---------------~~~~~~l----------------- 170 (452)
T 3zyi_A 134 -WLTVIPSGAFEYLSKLRELWLRNNPIES----------IP---------------SYAFNRV----------------- 170 (452)
T ss_dssp -CCSBCCTTTSSSCTTCCEEECCSCCCCE----------EC---------------TTTTTTC-----------------
T ss_pred -cCCccChhhhcccCCCCEEECCCCCcce----------eC---------------HhHHhcC-----------------
Confidence 34444433 5556666666654432110 00 0001111
Q ss_pred chhHhhhccCCCCCCcceEEEeee-CCCccC-cccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccC
Q 001955 736 YIDDALLEGLKPHQNLKELTIIRF-GGIRLS-SWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 736 ~~~~~~l~~l~~~~~L~~L~l~~~-~~~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
++|+.|.+.++ ....+| ..+..+++|+.|+|++|.. ..+|.+..+++|+.|++++ +.+..
T Consensus 171 -------------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~----N~l~~ 232 (452)
T 3zyi_A 171 -------------PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSG----NHFPE 232 (452)
T ss_dssp -------------TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTT----SCCSE
T ss_pred -------------CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcC----CcCcc
Confidence 22222222221 111122 2345677777777777743 4456677777777777777 44444
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
..+..+..+++|+.|++++|. +..+.. ..+..+++|+.|++++| .++.++..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------------------------~~~~~l~~L~~L~L~~N-~l~~~~~~ 284 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQ-VSLIER--------------------------NAFDGLASLVELNLAHN-NLSSLPHD 284 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSC-CCEECT--------------------------TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCcccccCccCCCEEEeCCCc-CceECH--------------------------HHhcCCCCCCEEECCCC-cCCccChH
Confidence 444455566677777776652 111110 01334566666666666 55566555
Q ss_pred cCCCCCCccEEEEecCC
Q 001955 894 MMPNFPSIQNISIELCP 910 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~ 910 (991)
.+..+++|+.|+|++|+
T Consensus 285 ~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEccCCC
Confidence 55666666666666664
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=189.71 Aligned_cols=243 Identities=20% Similarity=0.241 Sum_probs=140.2
Q ss_pred ccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccc
Q 001955 577 LRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 577 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 656 (991)
.+.++.++..++.+|..+. .++++|+|++|.+....|..+.++++|++|+|++|......|..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566666666666666554 56677777777633333355667777777777765433333355666777777777766
Q ss_pred cccCcCCc-CCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCcc
Q 001955 657 LSLTDMPN-GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVI 735 (991)
Q Consensus 657 ~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 735 (991)
.+..+|. .+..+++|++|++..+.... +. ...+..+
T Consensus 123 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~----------~~---------------~~~~~~l----------------- 159 (440)
T 3zyj_A 123 -RLTTIPNGAFVYLSKLKELWLRNNPIES----------IP---------------SYAFNRI----------------- 159 (440)
T ss_dssp -CCSSCCTTTSCSCSSCCEEECCSCCCCE----------EC---------------TTTTTTC-----------------
T ss_pred -cCCeeCHhHhhccccCceeeCCCCcccc----------cC---------------HHHhhhC-----------------
Confidence 4444543 46666666666664432110 00 0001111
Q ss_pred chhHhhhccCCCCCCcceEEEeeeC-CCccC-cccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccC
Q 001955 736 YIDDALLEGLKPHQNLKELTIIRFG-GIRLS-SWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISS 813 (991)
Q Consensus 736 ~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lp-~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~ 813 (991)
++|+.|.+.++. ...++ ..+..+++|+.|+|++|. ...+|.+..+++|+.|++++ +.+..
T Consensus 160 -------------~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~----N~l~~ 221 (440)
T 3zyj_A 160 -------------PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSG----NHLSA 221 (440)
T ss_dssp -------------TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTT----SCCCE
T ss_pred -------------cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCC----CccCc
Confidence 223333333211 11222 245567788888888874 44667777888888888887 44444
Q ss_pred CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc
Q 001955 814 SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE 893 (991)
Q Consensus 814 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 893 (991)
..+..+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| .++.++..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------------------------~~~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQ-IQVIER--------------------------NAFDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCC-CCEECT--------------------------TSSTTCTTCCEEECTTS-CCCCCCTT
T ss_pred cChhhhccCccCCEEECCCCc-eeEECh--------------------------hhhcCCCCCCEEECCCC-CCCccChh
Confidence 445566677777777777662 221111 12345677777777776 66667666
Q ss_pred cCCCCCCccEEEEecCC
Q 001955 894 MMPNFPSIQNISIELCP 910 (991)
Q Consensus 894 ~~~~l~~L~~L~l~~c~ 910 (991)
.+..+++|+.|+|++|+
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 66777777777777765
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=3.4e-21 Score=223.15 Aligned_cols=377 Identities=15% Similarity=0.073 Sum_probs=187.7
Q ss_pred ceEEEEEEecCCCCCc-chhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-Cc-cccCC
Q 001955 521 RTHHISCVSGFDSSLE-FPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PS-LIGKL 597 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~-~~~~l 597 (991)
..+++.+ .+...... ....+..+++|++|.+.++...... ...++..+..+++|++|+|++|.+... +. ....+
T Consensus 4 ~l~~L~L-s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhh-hhcccCchhHHHHHhhcCCccEEEccCCCCCHHH--HHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 4556666 33333221 1222566777777777776543321 112345566777788888887777632 22 22234
Q ss_pred C----CccEEEccCCCCc----cccchhhhcccCCCEEeCCCCCCCcccccccc-----ccccCcEEeeccccccCc---
Q 001955 598 K----HLRYFNLSHNADI----KSLPDSVSRLLNLQTLDLSCCDDLVELPRDIG-----KMVSLRHLAIESCLSLTD--- 661 (991)
Q Consensus 598 ~----~L~~L~L~~~~~~----~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~-----~L~~L~~L~l~~~~~~~~--- 661 (991)
. +|++|+|++|.+. ..+|..+.++++|++|++++|......+..+. .+++|++|++++|.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 5778888777733 14567777777788888877653222232222 245677777777733221
Q ss_pred -CCcCCCCCCCCCcCCccccCCcC-CcccccCcccCCceeEEcccCCchhhHhhhcc-cCCCCCceEEEecCCCCccchh
Q 001955 662 -MPNGLGQLTNLRTLPLFMVGRKT-QLSQLNGLNKLRGSLRIENLGEKQNSRLANLE-AKEGLQSLVLQWDANKTVIYID 738 (991)
Q Consensus 662 -lp~~l~~L~~L~~L~l~~~~~~~-~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~ 738 (991)
++..+..+++|++|++..+.... .+..+ ...+. ..++|+.|+++++..... ..
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l----------------------~~~l~~~~~~L~~L~L~~n~l~~~--~~ 216 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVL----------------------CQGLKDSPCQLEALKLESCGVTSD--NC 216 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHH----------------------HHHHHHSCCCCCEEECTTSCCBTT--HH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHH----------------------HHHHhcCCCCceEEEccCCCCcHH--HH
Confidence 23445556677777665443210 00000 00011 123555555554432100 00
Q ss_pred HhhhccCCCCCCcceEEEeeeCCCcc------CcccccccccCceeecccccccc----CC-CCCCCCccceeecccccc
Q 001955 739 DALLEGLKPHQNLKELTIIRFGGIRL------SSWLSSVTNLTMIDISICIKCQY----IP-ELDQLPSLKRLRLFKLSA 807 (991)
Q Consensus 739 ~~~l~~l~~~~~L~~L~l~~~~~~~l------p~~l~~l~~L~~L~L~~~~~~~~----lp-~l~~l~~L~~L~l~~~~~ 807 (991)
......+..+++|+.|.+.++..... +.+...+++|+.|++++|..... ++ .+..+++|++|+++++
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-- 294 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-- 294 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC--
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC--
Confidence 00111222345555665555432221 11122356666666666643321 22 2344566666666652
Q ss_pred ceeccCCCCCCC-----CCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeec
Q 001955 808 LEYISSSSPPST-----TIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIE 882 (991)
Q Consensus 808 l~~i~~~~~~~~-----~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~ 882 (991)
.+.......+ ...++|+.|++++|. +..... ......+..+++|++|+++
T Consensus 295 --~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~----------------------~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 295 --ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC----------------------SHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp --CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH----------------------HHHHHHHHHCSSCCEEECC
T ss_pred --CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH----------------------HHHHHHHhhCCCccEEEcc
Confidence 2211100000 123567777776663 111000 0000012245777888887
Q ss_pred cCCCCCCCCCcc----CC-CCCCccEEEEecCCCCC-----cccccCCCCCCCCeEeeecCCCCC--------cCCCCCC
Q 001955 883 SIDDLETWPEEM----MP-NFPSIQNISIELCPKLI-----SLPQRLNKATTLKTVGIYDCPNMA--------ILPEGLQ 944 (991)
Q Consensus 883 ~~~~l~~l~~~~----~~-~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~c~~l~--------~lp~~~~ 944 (991)
+| .++...... +. ..++|++|++++| .++ .+|..+..+++|++|++++|+.-. .+|....
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~ 427 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCc
Confidence 77 443322111 11 2568888888888 455 567777778888888888886321 2444332
Q ss_pred -cCeEEEecC
Q 001955 945 -LQSLEIIQC 953 (991)
Q Consensus 945 -L~~L~i~~c 953 (991)
|+.|++.++
T Consensus 428 ~L~~L~~~~~ 437 (461)
T 1z7x_W 428 LLEQLVLYDI 437 (461)
T ss_dssp CCCEEECTTC
T ss_pred chhheeeccc
Confidence 666666654
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.4e-19 Score=213.36 Aligned_cols=372 Identities=15% Similarity=0.090 Sum_probs=222.6
Q ss_pred ceEEEEEEecCCCCCcchhhhhc-CC-CCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc-----cCcc
Q 001955 521 RTHHISCVSGFDSSLEFPTALLR-AK-NLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET-----VPSL 593 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~~~~~~~~-~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-----lp~~ 593 (991)
..+++.+. ........+..+.. ++ +|+.|.+..+... ....+..+..++++|++|+|++|.+.. ++..
T Consensus 113 ~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 113 QLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGF----TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp TCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEE----EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCc----CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 35566663 22232222333433 33 4888888765421 112244556688899999999887653 3334
Q ss_pred ccCCCCccEEEccCCCCc----cccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeecccccc---CcCCcCC
Q 001955 594 IGKLKHLRYFNLSHNADI----KSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSL---TDMPNGL 666 (991)
Q Consensus 594 ~~~l~~L~~L~L~~~~~~----~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~---~~lp~~l 666 (991)
+..+++|++|++++|... ..++..+.++++|++|++++|. +..+|..+.++++|++|+++.+... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 567888999999888743 3566667788999999999864 5568888888999999998754332 2344567
Q ss_pred CCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhH-hhhcccCCCCCceEEEecCCCCccchhHhhhcc-
Q 001955 667 GQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSR-LANLEAKEGLQSLVLQWDANKTVIYIDDALLEG- 744 (991)
Q Consensus 667 ~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~- 744 (991)
..+++|+.|++..+........+..+.+|+ .+.+.... ..... ...+..+++|+.|.++.+ ..+..+..
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~-~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-------~~~~~l~~~ 337 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIR-KLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-------IGDRGLEVL 337 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCC-EEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-------GHHHHHHHH
T ss_pred hccccccccCccccchhHHHHHHhhcCCCc-EEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-------cCHHHHHHH
Confidence 777888888776543333333344555666 66776655 33222 233567788888888732 11122211
Q ss_pred CCCCCCcceEEEee----------eCCCc---cCcccccccccCceeecccccccc-CCCCCC-CCccceeeccccccce
Q 001955 745 LKPHQNLKELTIIR----------FGGIR---LSSWLSSVTNLTMIDISICIKCQY-IPELDQ-LPSLKRLRLFKLSALE 809 (991)
Q Consensus 745 l~~~~~L~~L~l~~----------~~~~~---lp~~l~~l~~L~~L~L~~~~~~~~-lp~l~~-l~~L~~L~l~~~~~l~ 809 (991)
...+++|+.|.+.+ +.... ++.....+++|++|+++.+..... +..++. +++|+.|++.+|..-+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 13356788888883 22211 222334678888888865544332 123333 6788888887543223
Q ss_pred eccCC-----CCCCCCCCCCccEEeeccccc-cccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeecc
Q 001955 810 YISSS-----SPPSTTIFPSLEELRIFACPE-LKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIES 883 (991)
Q Consensus 810 ~i~~~-----~~~~~~~~~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 883 (991)
.+... +......+++|+.|+++.|.+ +..-.... ....+++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~-------------------------~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY-------------------------IGQYSPNVRWMLLGY 472 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH-------------------------HHHSCTTCCEEEECS
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH-------------------------HHHhCccceEeeccC
Confidence 33221 111123578888888877643 11100000 012467889999988
Q ss_pred CCCCCCCC-CccCCCCCCccEEEEecCCCCCc--ccccCCCCCCCCeEeeecCC
Q 001955 884 IDDLETWP-EEMMPNFPSIQNISIELCPKLIS--LPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 884 ~~~l~~l~-~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~ 934 (991)
|. ++... ...+.++++|++|+|++|+ ++. ++..+..+++|+.|++++|+
T Consensus 473 n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 473 VG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 84 43311 1134678889999999996 442 44445578889999999988
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.6e-17 Score=178.96 Aligned_cols=242 Identities=21% Similarity=0.195 Sum_probs=169.1
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCC--ccccccccccccCcEEeec
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDL--VELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~--~~lp~~i~~L~~L~~L~l~ 654 (991)
+.++++++.++.+|..+. ++|++|++++|. +..+|.. +.++++|++|+|++|... +..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578999999999998664 699999999999 7788875 689999999999996533 2236777889999999999
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+|..+..+++|++|++..+...
T Consensus 87 ~n-~i~~l~~~~~~l~~L~~L~l~~n~l~--------------------------------------------------- 114 (306)
T 2z66_A 87 FN-GVITMSSNFLGLEQLEHLDFQHSNLK--------------------------------------------------- 114 (306)
T ss_dssp SC-SEEEEEEEEETCTTCCEEECTTSEEE---------------------------------------------------
T ss_pred CC-ccccChhhcCCCCCCCEEECCCCccc---------------------------------------------------
Confidence 98 55567777777777777766432110
Q ss_pred cchhHhhhccCCCCCCcceEEEeeeCCCccC--cccccccccCceeeccccccccCC-CCCCCCccceeeccccccceec
Q 001955 735 IYIDDALLEGLKPHQNLKELTIIRFGGIRLS--SWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYI 811 (991)
Q Consensus 735 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i 811 (991)
.++ ..+..+++|+.|++++|......+ .+..+++|++|++++ +.+
T Consensus 115 ----------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----n~l 162 (306)
T 2z66_A 115 ----------------------------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG----NSF 162 (306)
T ss_dssp ----------------------------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT----CEE
T ss_pred ----------------------------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC----Ccc
Confidence 011 123345566666666665444333 355666666666666 333
Q ss_pred cC-CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCC
Q 001955 812 SS-SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETW 890 (991)
Q Consensus 812 ~~-~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 890 (991)
.. ..+..+..+++|+.|++++|. +..... ..+..+++|+.|++++| .++.+
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------------------------~~~~~l~~L~~L~L~~N-~l~~~ 214 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQ-LEQLSP--------------------------TAFNSLSSLQVLNMSHN-NFFSL 214 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSC-CCEECT--------------------------TTTTTCTTCCEEECTTS-CCSBC
T ss_pred ccccchhHHhhCcCCCEEECCCCC-cCCcCH--------------------------HHhcCCCCCCEEECCCC-ccCcc
Confidence 32 234445566777777777662 221110 12346678888888887 67777
Q ss_pred CCccCCCCCCccEEEEecCCCCCcccccCCCCC-CCCeEeeecCC
Q 001955 891 PEEMMPNFPSIQNISIELCPKLISLPQRLNKAT-TLKTVGIYDCP 934 (991)
Q Consensus 891 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 934 (991)
+...+..+++|+.|++++|+..+..|..+..++ +|+.|++++|+
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 766688899999999999966566677788885 99999999998
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=186.33 Aligned_cols=250 Identities=19% Similarity=0.200 Sum_probs=134.6
Q ss_pred CcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc-ccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 652 (991)
++|++|+|++|.++.+|. .+.++++|++|++++|.+.+..|..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 466777777777666654 56667777777777766333334456667777777777643 4455544 56667777777
Q ss_pred eccccccCcCCc--CCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecC
Q 001955 653 IESCLSLTDMPN--GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDA 730 (991)
Q Consensus 653 l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 730 (991)
+++| .+..+|. .++.+++|++|++..+...
T Consensus 131 L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~----------------------------------------------- 162 (353)
T 2z80_A 131 LLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF----------------------------------------------- 162 (353)
T ss_dssp CTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------------------------
T ss_pred CCCC-CCcccCchhhhccCCCCcEEECCCCccc-----------------------------------------------
Confidence 7666 4445554 4556666666655443110
Q ss_pred CCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccccCCC--CCCCCccceeecccccc
Q 001955 731 NKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIPE--LDQLPSLKRLRLFKLSA 807 (991)
Q Consensus 731 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp~--l~~l~~L~~L~l~~~~~ 807 (991)
... ....+...++|+.|.+.++....+ |.++..+++|+.|++++|.. ..+|. +..+++|+.|++++
T Consensus 163 --~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~--- 231 (353)
T 2z80_A 163 --TKI-----QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRD--- 231 (353)
T ss_dssp --CEE-----CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEES---
T ss_pred --ccc-----CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCC---
Confidence 000 001122234555555555544433 55566677777777777653 23331 23456777777776
Q ss_pred ceeccCCCCCC---CCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccC
Q 001955 808 LEYISSSSPPS---TTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESI 884 (991)
Q Consensus 808 l~~i~~~~~~~---~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 884 (991)
+.+....+.. ....+.++.+++.++. +.++
T Consensus 232 -n~l~~~~~~~l~~~~~~~~l~~l~L~~~~----------------------------------------------l~~~ 264 (353)
T 2z80_A 232 -TDLDTFHFSELSTGETNSLIKKFTFRNVK----------------------------------------------ITDE 264 (353)
T ss_dssp -CBCTTCCCC------CCCCCCEEEEESCB----------------------------------------------CCHH
T ss_pred -Cccccccccccccccccchhhcccccccc----------------------------------------------ccCc
Confidence 3333221111 1234556666655441 1111
Q ss_pred CCCCCCCCccCCCCCCccEEEEecCCCCCcccccC-CCCCCCCeEeeecCC
Q 001955 885 DDLETWPEEMMPNFPSIQNISIELCPKLISLPQRL-NKATTLKTVGIYDCP 934 (991)
Q Consensus 885 ~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 934 (991)
.+..+|. .+..+++|+.|++++| .++.+|..+ ..+++|+.|++++|+
T Consensus 265 -~l~~l~~-~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 265 -SLFQVMK-LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -HHHHHHH-HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -chhhhHH-HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1112222 2445666777777776 556666653 667777777777776
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=3.5e-17 Score=192.83 Aligned_cols=125 Identities=22% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCccE
Q 001955 748 HQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEE 827 (991)
Q Consensus 748 ~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~ 827 (991)
+++|+.|.+.++....+|.. +++|+.|++++|.. ..+|. .+++|+.|++++ +.+.. ++ ..+++|+.
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l-~~l~~--~~~~L~~L~Ls~----N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPA--LPSGLKELIVSG----NRLTS-LP---VLPSELKE 245 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCS----SCCSC-CC---CCCTTCCE
T ss_pred CCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcc-cccCC--CCCCCCEEEccC----CccCc-CC---CCCCcCcE
Confidence 35677777777776666653 47888889988854 35553 347899999988 44432 22 45788999
Q ss_pred EeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEe
Q 001955 828 LRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIE 907 (991)
Q Consensus 828 L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~ 907 (991)
|++++| .+..++. .+++|+.|++++| .++.+|. .+.++++|+.|+|+
T Consensus 246 L~Ls~N-~L~~lp~------------------------------~~~~L~~L~Ls~N-~L~~lp~-~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 246 LMVSGN-RLTSLPM------------------------------LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTVNLE 292 (622)
T ss_dssp EECCSS-CCSCCCC------------------------------CCTTCCEEECCSS-CCCSCCG-GGGGSCTTCEEECC
T ss_pred EECCCC-CCCcCCc------------------------------ccccCcEEeCCCC-CCCcCCH-HHhhccccCEEEec
Confidence 999887 3332211 4578999999998 7788886 48889999999999
Q ss_pred cCCCCCcccccC
Q 001955 908 LCPKLISLPQRL 919 (991)
Q Consensus 908 ~c~~l~~lp~~l 919 (991)
+|+..+..|..+
T Consensus 293 ~N~l~~~~~~~l 304 (622)
T 3g06_A 293 GNPLSERTLQAL 304 (622)
T ss_dssp SCCCCHHHHHHH
T ss_pred CCCCCCcCHHHH
Confidence 997655555433
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=183.20 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=56.3
Q ss_pred CcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccc-cccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 652 (991)
+++++|+|++|.++.++ ..|.++++|++|+|++|.+....|..+.++++|++|+|++|. +..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceee
Confidence 45566666666666543 456666666666666666222223455666666666666643 344443 456666666666
Q ss_pred eccccccCcCC-cCCCCCCCCCcCCcc
Q 001955 653 IESCLSLTDMP-NGLGQLTNLRTLPLF 678 (991)
Q Consensus 653 l~~~~~~~~lp-~~l~~L~~L~~L~l~ 678 (991)
+++|. +..+| ..+..+++|++|++.
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCC
Confidence 66653 33333 245556666666553
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.7e-16 Score=170.43 Aligned_cols=97 Identities=23% Similarity=0.179 Sum_probs=64.8
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccc-hhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccc
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLP-DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 656 (991)
++++.+++.++.+|..+ .++|++|++++|. +..+| ..+.++++|++|++++|......|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777644 4678888888877 45454 45777888888888876543334667777888888888777
Q ss_pred cccCcC-CcCCCCCCCCCcCCc
Q 001955 657 LSLTDM-PNGLGQLTNLRTLPL 677 (991)
Q Consensus 657 ~~~~~l-p~~l~~L~~L~~L~l 677 (991)
..+..+ |..+..+++|++|++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCccccCHHHhcCCcCCCEEEC
Confidence 534444 445555555555554
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=4.6e-19 Score=212.19 Aligned_cols=375 Identities=13% Similarity=0.101 Sum_probs=240.1
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCc-ccEEEccCCC-cc--ccCccccCCCCccEEEccCCCCccc----
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKC-LRTLNLSNSE-IE--TVPSLIGKLKHLRYFNLSHNADIKS---- 613 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~-i~--~lp~~~~~l~~L~~L~L~~~~~~~~---- 613 (991)
..+++|+.|.+.++...+.. +..+...++. |++|+|++|. +. .++..+.++++|++|+|++|.+.+.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~-----~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLD-----LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHH-----HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hhCCCCCeEEeeccEecHHH-----HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 37899999999887544321 2222222444 9999999986 22 2344456899999999999974333
Q ss_pred cchhhhcccCCCEEeCCCCCCC----ccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc----CC
Q 001955 614 LPDSVSRLLNLQTLDLSCCDDL----VELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK----TQ 685 (991)
Q Consensus 614 lP~~i~~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~----~~ 685 (991)
++....++++|++|++++|... ..++..+.++++|++|++++| .+..+|..++.+++|++|++...... ..
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 5556678999999999987643 356666788999999999998 45568888889999999988643221 23
Q ss_pred cccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCC-Ccc
Q 001955 686 LSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGG-IRL 764 (991)
Q Consensus 686 ~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~l 764 (991)
...+..+.+|. .+.+..... ......+..+++|+.|+++++.. . +......+..+++|+.|.+.++.. ..+
T Consensus 263 ~~~l~~~~~L~-~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~~l-~----~~~~~~~~~~~~~L~~L~L~~~~~~~~l 334 (592)
T 3ogk_B 263 YMNLVFPRKLC-RLGLSYMGP--NEMPILFPFAAQIRKLDLLYALL-E----TEDHCTLIQKCPNLEVLETRNVIGDRGL 334 (592)
T ss_dssp SSCCCCCTTCC-EEEETTCCT--TTGGGGGGGGGGCCEEEETTCCC-C----HHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred HHHhhcccccc-ccCccccch--hHHHHHHhhcCCCcEEecCCCcC-C----HHHHHHHHHhCcCCCEEeccCccCHHHH
Confidence 33445555555 555554321 11222345677899999988752 1 111112245678999999984322 223
Q ss_pred CcccccccccCceeecc----------cccccc--CCC-CCCCCccceeeccccccceeccCCCCCCCC-CCCCccEEee
Q 001955 765 SSWLSSVTNLTMIDISI----------CIKCQY--IPE-LDQLPSLKRLRLFKLSALEYISSSSPPSTT-IFPSLEELRI 830 (991)
Q Consensus 765 p~~l~~l~~L~~L~L~~----------~~~~~~--lp~-l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~~L~~L~l 830 (991)
+.....+++|++|+|++ |...+. ++. ...+++|++|++.. +.+.......+. .+++|+.|++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~----~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV----SDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE----SCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec----CCccHHHHHHHHhhCCCCcEEEE
Confidence 44445789999999994 544332 222 33578999999943 333222222222 3889999999
Q ss_pred ccc---cccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCC-CCCCCCc-cCCCCCCccEEE
Q 001955 831 FAC---PELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDD-LETWPEE-MMPNFPSIQNIS 905 (991)
Q Consensus 831 ~~~---~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~-~~~~l~~L~~L~ 905 (991)
++| +.++..+...+ ....+..+++|++|++++|.. ++..... ....+++|+.|+
T Consensus 411 ~~~~~~n~l~~~p~~~~---------------------~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 411 VLLDREERITDLPLDNG---------------------VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp EECSCCSCCSSCCCHHH---------------------HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred eecCCCccccCchHHHH---------------------HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 854 33332211000 000123578999999988754 2221111 123589999999
Q ss_pred EecCCCCCc--ccccCCCCCCCCeEeeecCCCCCc--CCCC---C-CcCeEEEecCcchhh
Q 001955 906 IELCPKLIS--LPQRLNKATTLKTVGIYDCPNMAI--LPEG---L-QLQSLEIIQCPQLSE 958 (991)
Q Consensus 906 l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~--lp~~---~-~L~~L~i~~c~~L~~ 958 (991)
|++|. ++. ++..+..+++|+.|+|++|+ ++. ++.. . .|+.|++++|+ ++.
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 99995 543 45556788999999999999 542 2221 2 29999999998 543
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.8e-16 Score=182.35 Aligned_cols=221 Identities=21% Similarity=0.202 Sum_probs=141.0
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-hhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD-SVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~ 622 (991)
++++.|.+.++..... .+..|.++++|++|+|++|.+..++ ..|.++++|++|+|++|. +..+|. .+.+++
T Consensus 75 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCT
T ss_pred CCccEEECcCCcCceE------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccC
Confidence 4667776666654432 2344566777777777777776553 566677777777777776 444544 366677
Q ss_pred CCCEEeCCCCCCCccccc-cccccccCcEEeeccccccCcCCc-CCCCCCCCCcCCccccCCcCCcccccCcccCCceeE
Q 001955 623 NLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMPN-GLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLR 700 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~ 700 (991)
+|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|++|++..+....
T Consensus 148 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------------- 210 (452)
T 3zyi_A 148 KLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------------- 210 (452)
T ss_dssp TCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----------------
T ss_pred CCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----------------
Confidence 77777777754 344443 466677777777776656666554 35666666666664432110
Q ss_pred EcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceee
Q 001955 701 IENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDI 779 (991)
Q Consensus 701 i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L 779 (991)
+..+..+++|+.|.+.++....+ |.++..+++|+.|+|
T Consensus 211 -----------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 211 -----------------------------------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp -----------------------------------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred -----------------------------------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 01123345666666666655555 566778888999999
Q ss_pred ccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeecccc
Q 001955 780 SICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACP 834 (991)
Q Consensus 780 ~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~ 834 (991)
++|......| .+..+++|+.|+|++ +.+....+..+..+++|+.|++++||
T Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNSQVSLIERNAFDGLASLVELNLAH----NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCS----SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCcCceECHHHhcCCCCCCEEECCC----CcCCccChHHhccccCCCEEEccCCC
Confidence 8887665544 577888899999988 55554444556678889999988775
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=2.8e-17 Score=176.62 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=81.1
Q ss_pred CCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccc-cccccccccCcEE
Q 001955 574 FKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVEL-PRDIGKMVSLRHL 651 (991)
Q Consensus 574 ~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L 651 (991)
.++|++|+|++|.++.+| ..|..+++|++|++++|.+.+..|..+.++++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 467899999999998876 46889999999999999844444778899999999999997656665 6778899999999
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCcc
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPLF 678 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l~ 678 (991)
++++|......|..+..+++|++|++.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 999885443335556666666666653
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=4e-19 Score=205.65 Aligned_cols=356 Identities=16% Similarity=0.118 Sum_probs=225.9
Q ss_pred CceEEEEEEecCCCCC----cchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCC----cccEEEccCCCcc---
Q 001955 520 ERTHHISCVSGFDSSL----EFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFK----CLRTLNLSNSEIE--- 588 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~----~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~i~--- 588 (991)
...+.+.+ ....... .++..+..+++|++|.+.++...+.. +..++..++ +|++|+|++|.++
T Consensus 28 ~~L~~L~L-~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRL-DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-----VHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp TTCSEEEE-ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-----HHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred CCccEEEc-cCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH-----HHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 35677888 3443332 34566788899999999887654321 334445555 7999999999998
Q ss_pred --ccCccccCCCCccEEEccCCCCccccchhhhc-----ccCCCEEeCCCCCCCc----cccccccccccCcEEeecccc
Q 001955 589 --TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSR-----LLNLQTLDLSCCDDLV----ELPRDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 589 --~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~-----L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~ 657 (991)
.+|..+..+++|++|++++|.+....+..+.. .++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 45788999999999999999844333444433 5679999999986443 356677888999999999985
Q ss_pred ccCcCCcCCC-----CCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCC
Q 001955 658 SLTDMPNGLG-----QLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANK 732 (991)
Q Consensus 658 ~~~~lp~~l~-----~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 732 (991)
.....+..+. .+++|++|++..+..... ........+..+++|+.|+++.+...
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---------------------~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---------------------NCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---------------------HHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---------------------HHHHHHHHHHhCCCccEEeccCCcCC
Confidence 3322222222 356888888865532210 00111223445677888888776421
Q ss_pred CccchhHhhhcc-CCCCCCcceEEEeeeCCCc-----cCcccccccccCceeeccccccccCC-C-----CCCCCcccee
Q 001955 733 TVIYIDDALLEG-LKPHQNLKELTIIRFGGIR-----LSSWLSSVTNLTMIDISICIKCQYIP-E-----LDQLPSLKRL 800 (991)
Q Consensus 733 ~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~~lp-~-----l~~l~~L~~L 800 (991)
.... ...... ....++|+.|.+.++.... ++..+..+++|+.|++++|......+ . ....++|++|
T Consensus 241 -~~~~-~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 241 -DVGM-AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp -HHHH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred -hHHH-HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 0000 001111 2246789999998887655 56777789999999999996543211 1 1233699999
Q ss_pred eccccccceeccCC----CCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCC-CCCCc
Q 001955 801 RLFKLSALEYISSS----SPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAE-PPFSK 875 (991)
Q Consensus 801 ~l~~~~~l~~i~~~----~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~l~~ 875 (991)
++++|. +... ++..+..+++|+.|++++| .+........ ...+ ...++
T Consensus 319 ~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l----------------------~~~l~~~~~~ 371 (461)
T 1z7x_W 319 WVKSCS----FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL----------------------CQGLGQPGSV 371 (461)
T ss_dssp ECTTSC----CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH----------------------HHHHTSTTCC
T ss_pred EcCCCC----CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHH----------------------HHHHcCCCCc
Confidence 999853 3222 1223345799999999988 3332110000 0001 12679
Q ss_pred cCeeeeccCCCCC-----CCCCccCCCCCCccEEEEecCCCCCcc-----cccC-CCCCCCCeEeeecCC
Q 001955 876 LKSLTIESIDDLE-----TWPEEMMPNFPSIQNISIELCPKLISL-----PQRL-NKATTLKTVGIYDCP 934 (991)
Q Consensus 876 L~~L~l~~~~~l~-----~l~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l-~~l~~L~~L~l~~c~ 934 (991)
|++|++++| .++ .++. .+..+++|++|++++|+ ++.. ...+ ...++|+.|.+.++.
T Consensus 372 L~~L~L~~n-~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 372 LRVLWLADC-DVSDSSCSSLAA-TLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCEEECTTS-CCCHHHHHHHHH-HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred eEEEECCCC-CCChhhHHHHHH-HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999999999 555 3443 35668999999999994 4431 1111 234578888888776
No 68
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=4e-18 Score=151.70 Aligned_cols=82 Identities=20% Similarity=0.433 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHhhhcc-cCCchhHHHHHHHHHHHhhchhhHHHHhhHH
Q 001955 9 TVGKILEVLASQIFHEIGLAYGVQDDISNLRDTVDTIQAVLLDAEDKH-SRKDHAVTIWLRRLKDAVYAAEDLLDDFSTE 87 (991)
Q Consensus 9 ~v~~~~~~l~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~ 87 (991)
+|+++++||.+++.+|+.++.||++++++|+++|++|++||.+|+.+. ...+++++.|+++|||++||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999873 1578999999999999999999999999988
Q ss_pred HHH
Q 001955 88 FLR 90 (991)
Q Consensus 88 ~~~ 90 (991)
...
T Consensus 82 ~~~ 84 (115)
T 3qfl_A 82 VDG 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 743
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=5.1e-17 Score=177.23 Aligned_cols=150 Identities=13% Similarity=0.048 Sum_probs=77.8
Q ss_pred CCcceEEEeeeCCCccC-cccccccccCceeeccccccccCC-CC-CCCCccceeeccccccceeccCCCCCCCCCCCCc
Q 001955 749 QNLKELTIIRFGGIRLS-SWLSSVTNLTMIDISICIKCQYIP-EL-DQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSL 825 (991)
Q Consensus 749 ~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~lp-~l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L 825 (991)
++|+.|.+.++....++ ..+..+++|+.|++++|......+ .+ ..+++|++|+++++ .+... .....+++|
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N----~l~~~--~~~~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----FIYDV--KGQVVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS----CCCEE--ECCCCCTTC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC----cCccc--ccccccccC
Confidence 34556666666555553 356677888888888876554333 23 35677777777763 22211 112235666
Q ss_pred cEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEE
Q 001955 826 EELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNIS 905 (991)
Q Consensus 826 ~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 905 (991)
+.|++++| .+..++. .+..+++|+.|++++| .++.+|. .+..+++|+.|+
T Consensus 194 ~~L~Ls~N-~l~~l~~---------------------------~~~~l~~L~~L~L~~N-~l~~l~~-~~~~l~~L~~L~ 243 (317)
T 3o53_A 194 KTLDLSSN-KLAFMGP---------------------------EFQSAAGVTWISLRNN-KLVLIEK-ALRFSQNLEHFD 243 (317)
T ss_dssp CEEECCSS-CCCEECG---------------------------GGGGGTTCSEEECTTS-CCCEECT-TCCCCTTCCEEE
T ss_pred CEEECCCC-cCCcchh---------------------------hhcccCcccEEECcCC-cccchhh-HhhcCCCCCEEE
Confidence 66666655 1211111 1224455555555555 4444444 244555555555
Q ss_pred EecCCCC-CcccccCCCCCCCCeEeeecCC
Q 001955 906 IELCPKL-ISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 906 l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
+++|+.. ..+|..+..+++|+.|++.+|+
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECCCch
Confidence 5555433 2444445555555555555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.1e-16 Score=184.86 Aligned_cols=234 Identities=17% Similarity=0.131 Sum_probs=135.8
Q ss_pred cCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 573 SFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
.+++|++|+|++|.+..++ ..|+.+++|++|+|++|. +...+. ++.+++|++|+|++|. +..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEE
Confidence 3447888888888777664 567778888888888777 443333 7777777777777753 444442 2566666
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCC
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDAN 731 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 731 (991)
++++|. +..+|..
T Consensus 105 ~L~~N~-l~~~~~~------------------------------------------------------------------ 117 (487)
T 3oja_A 105 HAANNN-ISRVSCS------------------------------------------------------------------ 117 (487)
T ss_dssp ECCSSC-CCCEEEC------------------------------------------------------------------
T ss_pred ECcCCc-CCCCCcc------------------------------------------------------------------
Confidence 666652 1111100
Q ss_pred CCccchhHhhhccCCCCCCcceEEEeeeCCCcc-CcccccccccCceeeccccccccCC-CCC-CCCccceeeccccccc
Q 001955 732 KTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSVTNLTMIDISICIKCQYIP-ELD-QLPSLKRLRLFKLSAL 808 (991)
Q Consensus 732 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~lp-~l~-~l~~L~~L~l~~~~~l 808 (991)
.+++|+.|.+.++....+ |..++.+++|+.|+|++|...+..| .+. .+++|+.|++++
T Consensus 118 ---------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~---- 178 (487)
T 3oja_A 118 ---------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY---- 178 (487)
T ss_dssp ---------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT----
T ss_pred ---------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC----
Confidence 113455566666555544 4466778888888888887665444 343 577888888877
Q ss_pred eeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCC
Q 001955 809 EYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLE 888 (991)
Q Consensus 809 ~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 888 (991)
+.+... .....+++|+.|++++|. +..++. .+..+++|+.|++++| .++
T Consensus 179 N~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~---------------------------~~~~l~~L~~L~Ls~N-~l~ 227 (487)
T 3oja_A 179 NFIYDV--KGQVVFAKLKTLDLSSNK-LAFMGP---------------------------EFQSAAGVTWISLRNN-KLV 227 (487)
T ss_dssp SCCCEE--ECCCCCTTCCEEECCSSC-CCEECG---------------------------GGGGGTTCSEEECTTS-CCC
T ss_pred Cccccc--cccccCCCCCEEECCCCC-CCCCCH---------------------------hHcCCCCccEEEecCC-cCc
Confidence 333221 122246677777776662 221111 1234556666666665 455
Q ss_pred CCCCccCCCCCCccEEEEecCCCC-CcccccCCCCCCCCeEeee
Q 001955 889 TWPEEMMPNFPSIQNISIELCPKL-ISLPQRLNKATTLKTVGIY 931 (991)
Q Consensus 889 ~l~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 931 (991)
.+|. .+..+++|+.|++++|+.. ..+|..+..+++|+.|++.
T Consensus 228 ~lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECT-TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccch-hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5554 2555666666666666433 2445555555556655554
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=2.4e-15 Score=161.17 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=71.4
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
+.++++++.++++++.++.+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4677888999999998888887664 688899999988444445678888888888888854 5556554 67777888
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCC
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLP 676 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~ 676 (991)
|++++| .+..+|..+..+++|++|+
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEE
T ss_pred EECCCC-cCCcCchhhccCCCCCEEE
Confidence 887776 4445554444444444443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=1.8e-17 Score=180.30 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=98.1
Q ss_pred CCcceEEEeeeCCCccC-cccccccccCceeecccccccc---CCC--CCCCCccceeeccccccceeccC---CCCCCC
Q 001955 749 QNLKELTIIRFGGIRLS-SWLSSVTNLTMIDISICIKCQY---IPE--LDQLPSLKRLRLFKLSALEYISS---SSPPST 819 (991)
Q Consensus 749 ~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~---lp~--l~~l~~L~~L~l~~~~~l~~i~~---~~~~~~ 819 (991)
++|+.|.+.++....++ ..+..+++|+.|++++|...+. ++. ++.+++|++|++++ +.+.. .....+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN----AGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT----SCCCCHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC----CcCcchHHHHHHHH
Confidence 34455555555444454 5667788888888888875543 222 37778888888887 33321 111112
Q ss_pred CCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCC
Q 001955 820 TIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFP 899 (991)
Q Consensus 820 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~ 899 (991)
..+++|+.|++++|. +...... .....+++|+.|++++| .++.+|... . +
T Consensus 225 ~~l~~L~~L~Ls~N~-l~~~~~~-------------------------~~~~~l~~L~~L~Ls~N-~l~~ip~~~-~--~ 274 (312)
T 1wwl_A 225 AARVQLQGLDLSHNS-LRDAAGA-------------------------PSCDWPSQLNSLNLSFT-GLKQVPKGL-P--A 274 (312)
T ss_dssp HTTCCCSEEECTTSC-CCSSCCC-------------------------SCCCCCTTCCEEECTTS-CCSSCCSSC-C--S
T ss_pred hcCCCCCEEECCCCc-CCcccch-------------------------hhhhhcCCCCEEECCCC-ccChhhhhc-c--C
Confidence 356788888888773 2221100 01234688888999888 677777643 2 7
Q ss_pred CccEEEEecCCCCCcccccCCCCCCCCeEeeecCC
Q 001955 900 SIQNISIELCPKLISLPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 900 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 934 (991)
+|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 275 ~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 275 KLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 8999999998 6777776 8889999999999887
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=172.07 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=147.3
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchh-hhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~ 622 (991)
++|+.|.+.++..... .+..+.++++|++|+|++|.++.+ |..|.++++|++|++++|. +..+|.. +++++
T Consensus 52 ~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCc
Confidence 4788888887765432 244568888999999999988876 4568888999999999888 6667765 78889
Q ss_pred CCCEEeCCCCCCCccccc--cccccccCcEEeeccccccCcC-CcCCCCCCCCCcCCccccCCcC-CcccccCcccCCce
Q 001955 623 NLQTLDLSCCDDLVELPR--DIGKMVSLRHLAIESCLSLTDM-PNGLGQLTNLRTLPLFMVGRKT-QLSQLNGLNKLRGS 698 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l~~~~~~~-~~~~l~~l~~L~~~ 698 (991)
+|++|++++| .+..+|. .+.++++|++|++++|..+..+ |..++.+++|++|++..+.... ....+..+.+|+ .
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~ 202 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-H 202 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-E
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC-e
Confidence 9999999885 4567776 6788899999999888555555 4568888888888887765542 123333344333 3
Q ss_pred eEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCC-----ccCcccccccc
Q 001955 699 LRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGI-----RLSSWLSSVTN 773 (991)
Q Consensus 699 l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~lp~~l~~l~~ 773 (991)
+.+..... .......+..+++|+.|+++.+....... ..+........++.+.+.++... .+|.++..+++
T Consensus 203 L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 203 LILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHF---SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCC---C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ecCCCCcc-ccchhhhhhhcccccEEECCCCccccccc---cccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 33332221 11111112234566666666553211100 00111112234444444443221 24455556666
Q ss_pred cCceeeccccccccCCC--CCCCCccceeeccc
Q 001955 774 LTMIDISICIKCQYIPE--LDQLPSLKRLRLFK 804 (991)
Q Consensus 774 L~~L~L~~~~~~~~lp~--l~~l~~L~~L~l~~ 804 (991)
|+.|+|++|... .+|. ++.+++|++|++++
T Consensus 279 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC
Confidence 666666666443 3332 35555666666655
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=2.1e-15 Score=171.45 Aligned_cols=303 Identities=11% Similarity=-0.006 Sum_probs=181.6
Q ss_pred CCceeecchhHHHHHHHH-hCCCCCCCCceEEEEE--EecCCChHHHHHHHHhCCcccc---cccc-ceEEEEecCCCCh
Q 001955 163 KEDIIGRDGDKNEIIDRL-LDSSESEIESVAVIPI--VGIGGLGKTAVAQLVYNDEDVK---THFN-LRMWVCVSDIFDV 235 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~~~ 235 (991)
+..++||+.+++++.+++ ...........+.+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4211000013345666 9999999999999999742211 0122 3578887777788
Q ss_pred HHHHHHHHHHccCCCC-cccCHHHHHHHHHhHhC--CceeEEEeccccccC------hHHHHHHHHHhcCC---C--CCc
Q 001955 236 TTIVEKMIRSATNRES-EKLDLDQLQERLRGEID--GKRYLLVLDDVWNEN------RDKWLELEALLMNG---V--SGS 301 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 301 (991)
..++..++.+++...+ ...+.+++...+.+.+. +++++|||||+|... ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999998865432 12345566666666664 679999999998742 23344343333321 2 345
Q ss_pred EEEEecCcHHHHHHh--------C-CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcC------Cc
Q 001955 302 KIVVTTRSERVARIT--------S-KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCA------GV 366 (991)
Q Consensus 302 ~iivTTR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~------Gl 366 (991)
.+|+||+...+.... . ....+.+++++.++++++|...+........ --.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCc
Confidence 588888866543211 1 1223889999999999999765421111000 11355678888999 99
Q ss_pred hHHHHHHHHHh-h-----cC--CChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCC--CCceec
Q 001955 367 PLAIRTIGRLL-Y-----YN--NTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFP--KDYLIV 436 (991)
Q Consensus 367 PLal~~~~~~L-~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~ 436 (991)
|..+..+.... . .. -+.+.+..+...... ...+.-++..||.+.+.++..++.+. .+..+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 97655554321 1 11 122333333221100 23345577889999999999898753 223455
Q ss_pred HHHHHHHHH--H-cCCCcCCCCCCChHhhHHHHHHHHHhcccccccc
Q 001955 437 KEQLVLLWM--A-QGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAE 480 (991)
Q Consensus 437 ~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 480 (991)
...+...+. + . ..... .........+++.|.+.+++....
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLT-MYNVK---PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHH-HSCCC---CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHh-hcCCC---CCCHHHHHHHHHHHHhCCCEEeec
Confidence 555554442 2 1 11100 122345678899999999997654
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=4.3e-18 Score=203.92 Aligned_cols=373 Identities=17% Similarity=0.151 Sum_probs=189.1
Q ss_pred ceEEEEEEecCCCCCcchhhhh-cCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc-----cCccc
Q 001955 521 RTHHISCVSGFDSSLEFPTALL-RAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET-----VPSLI 594 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~~~~~~~-~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-----lp~~~ 594 (991)
..+++.+. ........+..+. .+++|++|.+..+.... ...++.++.++++|++|+|++|.++. ++...
T Consensus 106 ~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~----~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 106 WLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS----TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEE----HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC----HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 35566663 3223322333443 67889988887663211 12245566688899999999887653 33334
Q ss_pred cCCCCccEEEccCCC-Cc--cccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccc------cCcCCcC
Q 001955 595 GKLKHLRYFNLSHNA-DI--KSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLS------LTDMPNG 665 (991)
Q Consensus 595 ~~l~~L~~L~L~~~~-~~--~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~------~~~lp~~ 665 (991)
..+++|++|++++|. .+ ..++.-+.++++|++|++++|..+..+|..+.++++|++|+++.+.. +..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 477789999998875 11 12333345678899999988877777888888888999998766532 2233445
Q ss_pred CCCCCCCCcC-CccccCCcCCcccccCcccCCceeEEcccCCchhhH-hhhcccCCCCCceEEEecCCCCccchhHhhhc
Q 001955 666 LGQLTNLRTL-PLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSR-LANLEAKEGLQSLVLQWDANKTVIYIDDALLE 743 (991)
Q Consensus 666 l~~L~~L~~L-~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 743 (991)
++++++|+.| .+...........+..+.+|+ .+.+.... ..... ...+..+++|+.|.++.+. .+..+.
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~-------~~~~l~ 331 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT-TLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI-------EDAGLE 331 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCC-EEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGG-------HHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCC-EEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCcc-------CHHHHH
Confidence 6667777776 332221111111111333444 45554444 22222 2223455666666666541 111111
Q ss_pred cC-CCCCCcceEEEeee------CCCccC-----cccccccccCceeecccccccc-CCCCC-CCCccceeecc-----c
Q 001955 744 GL-KPHQNLKELTIIRF------GGIRLS-----SWLSSVTNLTMIDISICIKCQY-IPELD-QLPSLKRLRLF-----K 804 (991)
Q Consensus 744 ~l-~~~~~L~~L~l~~~------~~~~lp-----~~l~~l~~L~~L~L~~~~~~~~-lp~l~-~l~~L~~L~l~-----~ 804 (991)
.+ ..+++|+.|.+.++ ....+. .....+++|+.|.+..+..... +..+. .+++|+.|++. +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 11 12456666666432 111111 1112356666665544432221 11121 35666666666 2
Q ss_pred cccceeccC--CCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeec
Q 001955 805 LSALEYISS--SSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIE 882 (991)
Q Consensus 805 ~~~l~~i~~--~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~ 882 (991)
|..+..... .+...+..+++|+.|++++ .+....... ....+++|+.|+++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~-------------------------l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY-------------------------IGTYAKKMEMLSVA 464 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH-------------------------HHHHCTTCCEEEEE
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH-------------------------HHHhchhccEeecc
Confidence 322221100 0000022455666666644 221100000 00125677778877
Q ss_pred cCCCCCCCCCccC-CCCCCccEEEEecCCCCCc-ccccCCCCCCCCeEeeecCCC
Q 001955 883 SIDDLETWPEEMM-PNFPSIQNISIELCPKLIS-LPQRLNKATTLKTVGIYDCPN 935 (991)
Q Consensus 883 ~~~~l~~l~~~~~-~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~ 935 (991)
+|. ++......+ .++++|++|+|++|+.... ++..+..+++|+.|++++|+.
T Consensus 465 ~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 465 FAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 774 322111111 3467788888887754211 112344567788888888774
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=1.5e-14 Score=160.45 Aligned_cols=291 Identities=13% Similarity=0.145 Sum_probs=180.6
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC------Ch
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF------DV 235 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~ 235 (991)
.+..|+||+++++.+.+++.. + +++.|+|++|+|||||++++++.. + .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 456799999999999998864 1 589999999999999999998732 1 6777765432 55
Q ss_pred HHHHHHHHHHccC-----------------C-CCcccCHHHHHHHHHhHhCC-ceeEEEeccccccCh-------HHHHH
Q 001955 236 TTIVEKMIRSATN-----------------R-ESEKLDLDQLQERLRGEIDG-KRYLLVLDDVWNENR-------DKWLE 289 (991)
Q Consensus 236 ~~~~~~i~~~l~~-----------------~-~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~~~~-------~~~~~ 289 (991)
..++..+...+.. . .....+.+++.+.+.+..+. ++++|||||++..+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665432 0 00123556666667665543 389999999987432 22333
Q ss_pred HHHHhcCCCCCcEEEEecCcHHHHHHh-----------CC-CCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHH
Q 001955 290 LEALLMNGVSGSKIVVTTRSERVARIT-----------SK-LPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGK 357 (991)
Q Consensus 290 l~~~l~~~~~gs~iivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~ 357 (991)
+...+.. .++.++|+|++........ +. ...+.+.+|+.+|+.+++.......+... . .+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~---~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-P---ENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-C---HHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHH
Confidence 3333322 2577899998876542211 11 13688999999999999987543222111 1 24678
Q ss_pred HHHhhcCCchHHHHHHHHHhhcCCChHHHH-HHhhhhccCCCCCccchhhhhhhhccCC---ChhhHHHHhHhccCCCCc
Q 001955 358 DVVGKCAGVPLAIRTIGRLLYYNNTETYWL-HFRDDELSKVPQEESDILPKLKLSYDHL---PSPLKQCFAYCALFPKDY 433 (991)
Q Consensus 358 ~I~~~c~GlPLal~~~~~~L~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~ 433 (991)
.|++.|+|+|+++..++..+........+. .+.+ .+...+.-.+..+ ++..+..+..+|. +
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 999999999999999987643222121111 1111 0111111112222 7888999999998 2
Q ss_pred eecHHHHHHHHHHcCCCcCCCCCCChHhhHHHHHHHHHhcccccccccCCCCCEEEEEe-chhHHHHHH
Q 001955 434 LIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKI-HDLMHDLAE 501 (991)
Q Consensus 434 ~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~-Hdlv~~~a~ 501 (991)
.++...+.....+.. - .........+++.|.+.+++.... + .|.+ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~-~------~~~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG-T------KIPEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT-C------CCCHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-C------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 134455544432211 0 112345678999999999997542 1 2444 778887653
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=5.6e-19 Score=211.60 Aligned_cols=373 Identities=17% Similarity=0.182 Sum_probs=222.4
Q ss_pred hhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCC-Cccc--cCccccCCCCccEEEccCCCCccc----
Q 001955 541 LLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNS-EIET--VPSLIGKLKHLRYFNLSHNADIKS---- 613 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~--lp~~~~~l~~L~~L~L~~~~~~~~---- 613 (991)
...+++|+.|.+.++...+.. +..+...+++|++|+|++| .+.. ++..+.++++|++|+|++|.+...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~-----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDC-----LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHH-----HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHH-----HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 357889999999887544332 3344446899999999998 5553 555566899999999999973332
Q ss_pred cchhhhcccCCCEEeCCCCC-CC--ccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc-------
Q 001955 614 LPDSVSRLLNLQTLDLSCCD-DL--VELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK------- 683 (991)
Q Consensus 614 lP~~i~~L~~L~~L~L~~~~-~~--~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~------- 683 (991)
++.....+++|+.|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|++..+...
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 23323367799999999875 11 123333456799999999998666667777888899999986544321
Q ss_pred CCcccccCcccCCceeEEcccCCchhhHh-hhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCC
Q 001955 684 TQLSQLNGLNKLRGSLRIENLGEKQNSRL-ANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGI 762 (991)
Q Consensus 684 ~~~~~l~~l~~L~~~l~i~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~ 762 (991)
.....+.++.+|+ .+. .+........ ..+..+++|+.|+++++.. . +......+..+++|+.|.+.++...
T Consensus 256 ~l~~~l~~~~~L~-~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l-~----~~~l~~~~~~~~~L~~L~l~~~~~~ 327 (594)
T 2p1m_B 256 GLSVALSGCKELR-CLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYATV-Q----SYDLVKLLCQCPKLQRLWVLDYIED 327 (594)
T ss_dssp HHHHHHHTCTTCC-EEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCCC-C----HHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred HHHHHHhcCCCcc-ccc--CCcccchhhHHHHHHhhCCCCEEEccCCCC-C----HHHHHHHHhcCCCcCEEeCcCccCH
Confidence 1111233444444 221 1211111111 1223567888888887752 1 1112222345688999998876221
Q ss_pred -ccCcccccccccCceeeccc--------ccccc--CCCC-CCCCccceeeccccccceeccCCCCCCCC-CCCCccEEe
Q 001955 763 -RLSSWLSSVTNLTMIDISIC--------IKCQY--IPEL-DQLPSLKRLRLFKLSALEYISSSSPPSTT-IFPSLEELR 829 (991)
Q Consensus 763 -~lp~~l~~l~~L~~L~L~~~--------~~~~~--lp~l-~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~~L~~L~ 829 (991)
.++.....+++|+.|+|.+| ...+. +..+ ..+++|++|.+.. . .+.......+. .+|+|+.|+
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~---~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-R---QMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-S---CCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-C---CcCHHHHHHHHhhCCCcceeE
Confidence 12233336888999998543 11111 1112 2367888885543 2 22221111222 478999999
Q ss_pred ec-----cccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCC-CCCCccE
Q 001955 830 IF-----ACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMP-NFPSIQN 903 (991)
Q Consensus 830 l~-----~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~ 903 (991)
++ +|..+...+...+. ...+..+++|+.|++++ .++......+. .+++|+.
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~---------------------~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGF---------------------GAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHH---------------------HHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCE
T ss_pred eecccCCCcccccCCchhhHH---------------------HHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccE
Confidence 98 45444422111000 00023578999999966 33332211222 3889999
Q ss_pred EEEecCCCCCc-ccccC-CCCCCCCeEeeecCCCCCc-----CCCCCC-cCeEEEecCcc
Q 001955 904 ISIELCPKLIS-LPQRL-NKATTLKTVGIYDCPNMAI-----LPEGLQ-LQSLEIIQCPQ 955 (991)
Q Consensus 904 L~l~~c~~l~~-lp~~l-~~l~~L~~L~l~~c~~l~~-----lp~~~~-L~~L~i~~c~~ 955 (991)
|++++|. ++. .+..+ ..+++|+.|++++|+. .. +..... |+.|++++|+.
T Consensus 461 L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 461 LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999995 432 22222 5689999999999995 32 111122 99999999976
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.5e-16 Score=183.78 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=98.7
Q ss_pred chhhhhcC----CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCcc
Q 001955 537 FPTALLRA----KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIK 612 (991)
Q Consensus 537 ~~~~~~~~----~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 612 (991)
+|..+..+ ++|+.|.+.++..... .+..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|. +.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~ 93 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQ 93 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CC
Confidence 34444444 3899999999876553 35677999999999999999997665 9999999999999998 77
Q ss_pred ccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 613 SLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 613 ~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
.+|. .++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|+++.
T Consensus 94 ~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 94 ELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp EEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred CCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 7764 3899999999975 444443 3568999999999955444456677777777776644
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.7e-16 Score=173.12 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=150.4
Q ss_pred hcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcc
Q 001955 542 LRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRL 621 (991)
Q Consensus 542 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L 621 (991)
..+++|+.|.+.++..... .+..+.++++|++|+|++|.++.+++ +..+++|++|++++|. +..+|. .
T Consensus 31 ~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~ 98 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----G 98 (317)
T ss_dssp TTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----C
T ss_pred ccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----C
Confidence 3445666766666654432 23455666677777777776665544 6666777777777666 554442 3
Q ss_pred cCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEE
Q 001955 622 LNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRI 701 (991)
Q Consensus 622 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i 701 (991)
++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|++|++..+.... +
T Consensus 99 ~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------~-- 159 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------------V-- 159 (317)
T ss_dssp TTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------------E--
T ss_pred CCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------------c--
Confidence 667777776643 3333322 25667777776663333233455666666666665443220 0
Q ss_pred cccCCchhhHhhhc-ccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeec
Q 001955 702 ENLGEKQNSRLANL-EAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDIS 780 (991)
Q Consensus 702 ~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 780 (991)
....+ ..+++|+.|+++++.... +.....+++|+.|.+.++....+|..+..+++|+.|+|+
T Consensus 160 ---------~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 160 ---------NFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp ---------EGGGGGGGTTTCCEEECTTSCCCE--------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred ---------cHHHHhhccCcCCEEECCCCcCcc--------cccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 01111 234677777777664311 122334678899999888888888888888999999999
Q ss_pred cccccccCCCCCCCCccceeeccccccceecc-CCCCCCCCCCCCccEEeeccccccccc
Q 001955 781 ICIKCQYIPELDQLPSLKRLRLFKLSALEYIS-SSSPPSTTIFPSLEELRIFACPELKGW 839 (991)
Q Consensus 781 ~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~~L~~L~l~~~~~L~~~ 839 (991)
+|......+.+..+++|+.|++++ +.+. ...+..+..+++|+.|++.+++.++..
T Consensus 223 ~N~l~~l~~~~~~l~~L~~L~l~~----N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 223 NNKLVLIEKALRFSQNLEHFDLRG----NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTT----CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCcccchhhHhhcCCCCCEEEccC----CCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 986654444678888999999988 4333 222334456788888888877666543
No 80
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=6.9e-14 Score=155.54 Aligned_cols=291 Identities=11% Similarity=0.141 Sum_probs=174.4
Q ss_pred cCCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-----CChH
Q 001955 162 HKEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-----FDVT 236 (991)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~ 236 (991)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45679999999999998 642 489999999999999999998742 21 2578887643 3444
Q ss_pred HHHHHHHHHccC-------------C-------C--C-------cccCHHHHHHHHHhHhCCceeEEEeccccccCh---
Q 001955 237 TIVEKMIRSATN-------------R-------E--S-------EKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR--- 284 (991)
Q Consensus 237 ~~~~~i~~~l~~-------------~-------~--~-------~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--- 284 (991)
.+...+.+.+.. . . . .....+.+.+.+.+.-+ ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444333210 0 0 0 12345556666655433 499999999977431
Q ss_pred HHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh-----------CC-CCceecCCCChHHHHHHHHHHHccCCCCCCChhH
Q 001955 285 DKWLELEALLMNGVSGSKIVVTTRSERVARIT-----------SK-LPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKL 352 (991)
Q Consensus 285 ~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~ 352 (991)
..|..+...+....++.++|+|++........ +. ...+.+.+|+.+++.+++.......+.... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-
Confidence 22333333332222467899999986543221 11 236889999999999999875422121111 1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHhhcCCChHHHHH-HhhhhccCCCCCccchhhhhh-hhcc--CCChhhHHHHhHhcc
Q 001955 353 VQIGKDVVGKCAGVPLAIRTIGRLLYYNNTETYWLH-FRDDELSKVPQEESDILPKLK-LSYD--HLPSPLKQCFAYCAL 428 (991)
Q Consensus 353 ~~~~~~I~~~c~GlPLal~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~s~ 428 (991)
...|++.|+|+|+++..++..+........|.. +.+.. ...+...+. +.++ .|++..+..+..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 178999999999999999887643332323321 11100 000111111 2221 688899999999998
Q ss_pred CCCCceecHHHHHHHHH-HcCCCcCCCCCCChHhhHHHHHHHHHhcccccccccCCCCCEEEEE-echhHHHHH
Q 001955 429 FPKDYLIVKEQLVLLWM-AQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCK-IHDLMHDLA 500 (991)
Q Consensus 429 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~-~Hdlv~~~a 500 (991)
+. +...+....- ..|. .........+++.|++.+++.... + .|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 4444443211 1121 012345678899999999997543 2 255 478888763
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=8.8e-16 Score=167.00 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred cCCcccEEEccCCCcc-ccCccc--cCCCCccEEEccCCCCccccchhhhcc-----cCCCEEeCCCCCCCccccccccc
Q 001955 573 SFKCLRTLNLSNSEIE-TVPSLI--GKLKHLRYFNLSHNADIKSLPDSVSRL-----LNLQTLDLSCCDDLVELPRDIGK 644 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~-~lp~~~--~~l~~L~~L~L~~~~~~~~lP~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~ 644 (991)
++++|++|+|++|.++ .+|..+ ..+++|++|+|++|. +..+|..++.+ ++|++|++++|......|..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5667777777777766 456554 667777777777776 44446666666 67777777765543333456667
Q ss_pred cccCcEEeeccccccCc--CCcCC--CCCCCCCcCCcccc
Q 001955 645 MVSLRHLAIESCLSLTD--MPNGL--GQLTNLRTLPLFMV 680 (991)
Q Consensus 645 L~~L~~L~l~~~~~~~~--lp~~l--~~L~~L~~L~l~~~ 680 (991)
+++|++|++++|...+. +|..+ +.+++|++|++..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 77777777776643322 23333 56666666666443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=4.5e-14 Score=149.99 Aligned_cols=98 Identities=28% Similarity=0.403 Sum_probs=69.3
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCcccccc-ccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 652 (991)
...+.++++++.++.+|..+. ++|++|+|++|. +..+|. .+.++++|++|+|++|. +..+|.. +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 357789999999998887665 678999999988 556654 68888999999998854 5566655 47788888888
Q ss_pred eccccccCcCCc-CCCCCCCCCcCCc
Q 001955 653 IESCLSLTDMPN-GLGQLTNLRTLPL 677 (991)
Q Consensus 653 l~~~~~~~~lp~-~l~~L~~L~~L~l 677 (991)
+++| .+..+|. .+..+++|++|++
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCC-cCCcCCHhHcccccCCCEEEC
Confidence 8877 3344443 2344444444443
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=6.1e-15 Score=159.79 Aligned_cols=100 Identities=26% Similarity=0.365 Sum_probs=61.6
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
.+++|+.|++++|.+..+| .+..+++|++|++++|. +..+|. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEE
Confidence 4556666666666666665 46666667777776666 555555 6666667777776643 44444 466666677777
Q ss_pred eccccccCcCCcCCCCCCCCCcCCccc
Q 001955 653 IESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
+++| .+..+|. +..+++|++|++..
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCC-CCCCchh-hcCCCCCCEEECCC
Confidence 6666 3444443 56666666666544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=1.4e-14 Score=150.86 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=36.8
Q ss_pred CccCeeeeccCCCCCCCCCccCCCC-CCccEEEEecCCCCCcccccCCCCCCCCeEeeecCCC
Q 001955 874 SKLKSLTIESIDDLETWPEEMMPNF-PSIQNISIELCPKLISLPQRLNKATTLKTVGIYDCPN 935 (991)
Q Consensus 874 ~~L~~L~l~~~~~l~~l~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 935 (991)
++|+.|++++|+.++.++...+..+ ++|+.|++++| .++.+|.. .+++|+.|++++|..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 4555555555544556655556666 77777777776 56666654 567777777776653
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=6.7e-14 Score=148.63 Aligned_cols=74 Identities=26% Similarity=0.476 Sum_probs=51.6
Q ss_pred CccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeeccccccCcCCcC-CCCCCCCCcCC
Q 001955 599 HLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIESCLSLTDMPNG-LGQLTNLRTLP 676 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~ 676 (991)
++++++++++. +..+|..+. .+|+.|+|++|. +..+| ..+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 57788888887 777887654 578888888865 44554 46888888888888887 44455544 35555565555
Q ss_pred c
Q 001955 677 L 677 (991)
Q Consensus 677 l 677 (991)
+
T Consensus 92 l 92 (270)
T 2o6q_A 92 V 92 (270)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=2.6e-14 Score=152.53 Aligned_cols=107 Identities=29% Similarity=0.297 Sum_probs=44.2
Q ss_pred hccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCc
Q 001955 571 VSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLR 649 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 649 (991)
+.++++|++|+|++|.+..++. .+.++++|++|++++|.+.+..|..+.++++|++|++++|......+..++.+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 3444444444444444444332 344444444444444442222223344444444444444332221222344444444
Q ss_pred EEeeccccccC-cCCcCCCCCCCCCcCCc
Q 001955 650 HLAIESCLSLT-DMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 650 ~L~l~~~~~~~-~lp~~l~~L~~L~~L~l 677 (991)
+|++++|.... .+|..++.+++|++|++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred EEECcCCccceecCchhhccCCCCCEEEC
Confidence 44444442211 13344444444444443
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.6e-14 Score=153.64 Aligned_cols=101 Identities=29% Similarity=0.444 Sum_probs=61.8
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccc-ccccccccCcE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRH 650 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~ 650 (991)
..+++|+.|++++|.+..++ .+..+++|++|++++|. +..+| .++++++|++|++++|. +..+| ..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 34566777777777776654 36677777777777776 44454 46777777777777754 33433 33567777777
Q ss_pred EeeccccccCcCCc-CCCCCCCCCcCCc
Q 001955 651 LAIESCLSLTDMPN-GLGQLTNLRTLPL 677 (991)
Q Consensus 651 L~l~~~~~~~~lp~-~l~~L~~L~~L~l 677 (991)
|++++|. +..+|. .++.+++|++|++
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEEC
Confidence 7777763 333332 2444444544444
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.8e-16 Score=172.26 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccc-cchhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKS-LPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
+.++.|++++|.+...+..+..+++|++|++++|.+... +|..+.++++|++|+|++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 678888888888877666677788888888888874333 7777888888888888887655567777888888888888
Q ss_pred ccccccCc--CCcCCCCCCCCCcCCc
Q 001955 654 ESCLSLTD--MPNGLGQLTNLRTLPL 677 (991)
Q Consensus 654 ~~~~~~~~--lp~~l~~L~~L~~L~l 677 (991)
++|..+.. +|..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 88743331 3333444444544444
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=7.3e-14 Score=149.65 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=134.8
Q ss_pred ccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCC
Q 001955 594 IGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLR 673 (991)
Q Consensus 594 ~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~ 673 (991)
+.++++|+.++++++. +..+|..+. ++|++|+|++|......|..+..+++|++|++++| .+..+|.. +.+++
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~-- 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPV-- 78 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTT--
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCc--
Confidence 5677888888888887 777887654 67888888886644444566778888888888776 33333221 22222
Q ss_pred cCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcce
Q 001955 674 TLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKE 753 (991)
Q Consensus 674 ~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~ 753 (991)
|+.
T Consensus 79 -----------------------------------------------------------------------------L~~ 81 (290)
T 1p9a_G 79 -----------------------------------------------------------------------------LGT 81 (290)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred -----------------------------------------------------------------------------CCE
Confidence 333
Q ss_pred EEEeeeCCCccCcccccccccCceeeccccccccCC-CCCCCCccceeeccccccceeccCCCCCCCCCCCCccEEeecc
Q 001955 754 LTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP-ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFA 832 (991)
Q Consensus 754 L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp-~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~ 832 (991)
|.+.++....+|..+..+++|+.|++++|......| .+..+++|++|++++ +.+....+..
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~----N~l~~~~~~~-------------- 143 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG----NELKTLPPGL-------------- 143 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT----SCCCCCCTTT--------------
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC----CCCCccChhh--------------
Confidence 333333334455555667777888888775543332 355666666666665 3332221222
Q ss_pred ccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCC
Q 001955 833 CPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKL 912 (991)
Q Consensus 833 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l 912 (991)
+..+++|+.|++++| .++.+|...+..+++|+.|++++| .+
T Consensus 144 -------------------------------------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l 184 (290)
T 1p9a_G 144 -------------------------------------LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SL 184 (290)
T ss_dssp -------------------------------------TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -------------------------------------cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cC
Confidence 234566666666666 677888877888999999999999 78
Q ss_pred CcccccCCCCCCCCeEeeecCCC
Q 001955 913 ISLPQRLNKATTLKTVGIYDCPN 935 (991)
Q Consensus 913 ~~lp~~l~~l~~L~~L~l~~c~~ 935 (991)
+.+|..+..+++|+.|++++||.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCCB
T ss_pred CccChhhcccccCCeEEeCCCCc
Confidence 89999999999999999999983
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=3.7e-14 Score=151.32 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=87.1
Q ss_pred CcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccc-hhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 575 KCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLP-DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
++|++|+|++|.++.++. .+.++++|++|++++|. +..+| ..+.++++|++|++++|......|..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 469999999999998765 78999999999999998 55555 4789999999999999765444557789999999999
Q ss_pred eccccccCcCC-cCCCCCCCCCcCCccccCC
Q 001955 653 IESCLSLTDMP-NGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 653 l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~ 682 (991)
+++|. +..++ ..++.+++|++|++..+..
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCcc
Confidence 99984 44444 4689999999999977654
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.9e-14 Score=153.44 Aligned_cols=125 Identities=20% Similarity=0.314 Sum_probs=99.5
Q ss_pred hhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhc
Q 001955 541 LLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
...+++|+.|.+.++.... ++ .+..+++|++|+|++|.+..++. +..+++|++|++++|. +..+| .+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-------IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-------CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HHHcCCcCEEEeeCCCccC-------ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcC
Confidence 3456788999888775543 12 35789999999999999998877 9999999999999998 77776 5899
Q ss_pred ccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCcccc
Q 001955 621 LLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~ 680 (991)
+++|++|++++|. +..+|. +..+++|++|++++| .+..+|. ++.+++|++|++..+
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC
Confidence 9999999999965 566665 899999999999998 4555554 677777777776443
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.2e-13 Score=152.82 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=66.6
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCccccc-cccccccCcEEeecc
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIES 655 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~ 655 (991)
++++.++++++.+|..+ ..++++|+|++|. ++.+|. .+.++++|++|+|++|...+.+|. .+.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56677777777777665 2577888888877 677775 467788888888887665566664 356777776654444
Q ss_pred ccccCcCC-cCCCCCCCCCcCCcccc
Q 001955 656 CLSLTDMP-NGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 656 ~~~~~~lp-~~l~~L~~L~~L~l~~~ 680 (991)
++.+..+| ..+..+++|++|++..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred CCcccccCchhhhhcccccccccccc
Confidence 43555553 44666777777766554
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=4.2e-14 Score=147.29 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=124.7
Q ss_pred cccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEe
Q 001955 576 CLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLA 652 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 652 (991)
+|++|+|++|.++.+|. .|..+++|++|++++|..++.+|. .+.++++|++|++++|+.+..+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888887765 677788888888888753555554 57778888888888744555655 4567788888888
Q ss_pred eccccccCcCCcCCCCCCCCC---cCCcccc-CCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEe
Q 001955 653 IESCLSLTDMPNGLGQLTNLR---TLPLFMV-GRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQW 728 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~---~L~l~~~-~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (991)
+++| .+..+|. ++.+++|+ +|++..+ ...
T Consensus 112 l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~--------------------------------------------- 144 (239)
T 2xwt_C 112 IFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMT--------------------------------------------- 144 (239)
T ss_dssp EEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCC---------------------------------------------
T ss_pred CCCC-CCccccc-cccccccccccEEECCCCcchh---------------------------------------------
Confidence 8877 4455665 55565555 4444322 110
Q ss_pred cCCCCccchhHhhhccCCCCCCcc-eEEEeeeCCCccCcccccccccCceeeccccccccCC--CCCCC-Cccceeeccc
Q 001955 729 DANKTVIYIDDALLEGLKPHQNLK-ELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP--ELDQL-PSLKRLRLFK 804 (991)
Q Consensus 729 ~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp--~l~~l-~~L~~L~l~~ 804 (991)
.+ ....+..+++|+ .|.+.++....+|......++|+.|++++|.....+| .+..+ ++|+.|++++
T Consensus 145 -----~i-----~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 145 -----SI-----PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp -----EE-----CTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred -----hc-----CcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 00 000122334566 6666666666666655444788888888885344443 46777 8899998887
Q ss_pred cccceeccCCCCCCCCCCCCccEEeeccccc
Q 001955 805 LSALEYISSSSPPSTTIFPSLEELRIFACPE 835 (991)
Q Consensus 805 ~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~ 835 (991)
+.+.. .+.. .|++|+.|.+.++..
T Consensus 215 ----N~l~~-l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 ----TSVTA-LPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ----CCCCC-CCCT--TCTTCSEEECTTC--
T ss_pred ----Ccccc-CChh--HhccCceeeccCccC
Confidence 44432 2222 688899998887754
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=8.9e-14 Score=147.81 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=96.6
Q ss_pred hhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccch-hhh
Q 001955 541 LLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD-SVS 619 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~-~i~ 619 (991)
...+++|+.|.+.++..... + .+..+++|++|+|++|.+..++ .+..+++|++|++++|. +..+|. .++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~-------~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV-------Q-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC-------T-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred cccccceeeeeeCCCCcccc-------c-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 45677888888877654321 2 2577899999999999988864 68899999999999998 555554 468
Q ss_pred cccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcC-CCCCCCCCcCCcccc
Q 001955 620 RLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNG-LGQLTNLRTLPLFMV 680 (991)
Q Consensus 620 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~ 680 (991)
++++|++|++++|......|..++.+++|++|++++| .+..+|.. ++.+++|++|++..+
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC
Confidence 8999999999997644333445788999999999988 45555543 577888888877544
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=156.07 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=44.4
Q ss_pred CcccEEEccCCCccc-cCccc--cCCCCccEEEccCCCCccccc----hhhhcccCCCEEeCCCCCCCcccccccccccc
Q 001955 575 KCLRTLNLSNSEIET-VPSLI--GKLKHLRYFNLSHNADIKSLP----DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVS 647 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~-lp~~~--~~l~~L~~L~L~~~~~~~~lP----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 647 (991)
++|++|+|++|.+.. .|..+ ..+++|++|+|++|.+.+..| ..+..+++|++|+|++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666653 34444 566666666666666333322 22344556666666655443333445555666
Q ss_pred CcEEeeccc
Q 001955 648 LRHLAIESC 656 (991)
Q Consensus 648 L~~L~l~~~ 656 (991)
|++|++++|
T Consensus 171 L~~L~Ls~N 179 (310)
T 4glp_A 171 LTSLDLSDN 179 (310)
T ss_dssp CCEEECCSC
T ss_pred CCEEECCCC
Confidence 666666555
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=146.99 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=120.8
Q ss_pred cccEEEccCCCccc--cCc--cccCCCCccEEEccCCCCccccchhh--hcccCCCEEeCCCCCCCcccc----cccccc
Q 001955 576 CLRTLNLSNSEIET--VPS--LIGKLKHLRYFNLSHNADIKSLPDSV--SRLLNLQTLDLSCCDDLVELP----RDIGKM 645 (991)
Q Consensus 576 ~L~~L~L~~~~i~~--lp~--~~~~l~~L~~L~L~~~~~~~~lP~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~~L 645 (991)
.++.|.+.++.+.. +.. .+..+++|++|++++|.+.+..|..+ +++++|++|+|++|......| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35666666666541 111 12234567777777777556666666 777777777777765444333 234567
Q ss_pred ccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceE
Q 001955 646 VSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLV 725 (991)
Q Consensus 646 ~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~ 725 (991)
++|++|++++|......|..++.+++|++|+++.+....... + .....+..+++|+.|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~--------------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-L--------------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-H--------------------HTTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-h--------------------hHHHhhhcCCCCCEEE
Confidence 777777777774444444567777777777775553210000 0 0000012334455555
Q ss_pred EEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCcc-Ccccccc---cccCceeeccccccccCCC-CCCCCcccee
Q 001955 726 LQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRL-SSWLSSV---TNLTMIDISICIKCQYIPE-LDQLPSLKRL 800 (991)
Q Consensus 726 l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-p~~l~~l---~~L~~L~L~~~~~~~~lp~-l~~l~~L~~L 800 (991)
++.+.... .......-+...++|+.|.++++..... |..+..+ ++|++|+|++|... .+|. +. ++|+.|
T Consensus 204 Ls~N~l~~---l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 204 LRNTGMET---PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp CCSSCCCC---HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred CCCCCCCc---hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 55443210 0000000012235666666666655554 5444443 57777777777554 4442 32 677777
Q ss_pred eccccccceeccCCCCCCCCCCCCccEEeecccc
Q 001955 801 RLFKLSALEYISSSSPPSTTIFPSLEELRIFACP 834 (991)
Q Consensus 801 ~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~ 834 (991)
++++ +.+... +....+++|+.|++++++
T Consensus 278 ~Ls~----N~l~~~--~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSS----NRLNRA--PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCS----CCCCSC--CCTTSCCCCSCEECSSTT
T ss_pred ECCC----CcCCCC--chhhhCCCccEEECcCCC
Confidence 7776 444331 123466777777777764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.1e-12 Score=144.93 Aligned_cols=244 Identities=18% Similarity=0.145 Sum_probs=136.7
Q ss_pred cccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccc-cccccccCcEEeeccccccCcCCcC-CCCCC
Q 001955 593 LIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMPNG-LGQLT 670 (991)
Q Consensus 593 ~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~ 670 (991)
.++.|.. +.++-+++. +.++|..+ ..++++|+|++| .+..+|. .+.+|++|++|++++|...+.+|.+ +.+++
T Consensus 5 ~~C~C~~-~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 5 RICHCSN-RVFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp SSSEEET-TEEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CccEeeC-CEEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 3444432 567777777 88899876 468999999995 5778876 4789999999999999666666643 45555
Q ss_pred CCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCC
Q 001955 671 NLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQN 750 (991)
Q Consensus 671 ~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~ 750 (991)
+|+++..... +++. .+ ....+...++
T Consensus 80 ~l~~~l~~~~------------N~l~--------------------------~l----------------~~~~f~~l~~ 105 (350)
T 4ay9_X 80 KLHEIRIEKA------------NNLL--------------------------YI----------------NPEAFQNLPN 105 (350)
T ss_dssp TCCEEEEEEE------------TTCC--------------------------EE----------------CTTSBCCCTT
T ss_pred hhhhhhcccC------------Cccc--------------------------cc----------------Cchhhhhccc
Confidence 5544322110 0010 00 0011223345
Q ss_pred cceEEEeeeCCCccCcc-cccccccCceeeccccccccCC--CCCCC-CccceeeccccccceeccCCCCCCCCCCCCcc
Q 001955 751 LKELTIIRFGGIRLSSW-LSSVTNLTMIDISICIKCQYIP--ELDQL-PSLKRLRLFKLSALEYISSSSPPSTTIFPSLE 826 (991)
Q Consensus 751 L~~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~lp--~l~~l-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~ 826 (991)
|+.|.+.++....+|.. .....++..|++.++.....+| .+..+ ..++.|++++ +.+.. ++......++|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~----N~i~~-i~~~~f~~~~L~ 180 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK----NGIQE-IHNSAFNGTQLD 180 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS----SCCCE-ECTTSSTTEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc----ccccC-CChhhccccchh
Confidence 56666666555555432 2244556666666655444444 23333 3466666665 33321 122222345566
Q ss_pred EEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEE
Q 001955 827 ELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISI 906 (991)
Q Consensus 827 ~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l 906 (991)
.|.+.++..++.++.. .+..+++|+.|+++++ .++.+|... +.+|+.|.+
T Consensus 181 ~l~l~~~n~l~~i~~~--------------------------~f~~l~~L~~LdLs~N-~l~~lp~~~---~~~L~~L~~ 230 (350)
T 4ay9_X 181 ELNLSDNNNLEELPND--------------------------VFHGASGPVILDISRT-RIHSLPSYG---LENLKKLRA 230 (350)
T ss_dssp EEECTTCTTCCCCCTT--------------------------TTTTEECCSEEECTTS-CCCCCCSSS---CTTCCEEEC
T ss_pred HHhhccCCcccCCCHH--------------------------HhccCcccchhhcCCC-CcCccChhh---hccchHhhh
Confidence 6666665555544321 1235566666666666 566666532 445556666
Q ss_pred ecCCCCCcccccCCCCCCCCeEeee
Q 001955 907 ELCPKLISLPQRLNKATTLKTVGIY 931 (991)
Q Consensus 907 ~~c~~l~~lp~~l~~l~~L~~L~l~ 931 (991)
.+|.+++.+|. +..+++|+.+++.
T Consensus 231 l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 231 RSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ccCCCcCcCCC-chhCcChhhCcCC
Confidence 66666666663 5566666666664
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=7.2e-15 Score=165.25 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=83.0
Q ss_pred hhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc----cCccc-------cCCCCccEEEcc
Q 001955 538 PTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET----VPSLI-------GKLKHLRYFNLS 606 (991)
Q Consensus 538 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~----lp~~~-------~~l~~L~~L~L~ 606 (991)
+..+..+++|+.|.+.++....... ..+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4556677778888777765433211 1123345677788888888765542 23333 577888888888
Q ss_pred CCCCcc----ccchhhhcccCCCEEeCCCCCCCcc----cccccccc---------ccCcEEeecccccc-CcCC---cC
Q 001955 607 HNADIK----SLPDSVSRLLNLQTLDLSCCDDLVE----LPRDIGKM---------VSLRHLAIESCLSL-TDMP---NG 665 (991)
Q Consensus 607 ~~~~~~----~lP~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~~-~~lp---~~ 665 (991)
+|.+.. .+|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|... ..+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 877333 3677777788888888887654322 33334444 77777777777332 1222 23
Q ss_pred CCCCCCCCcCCccc
Q 001955 666 LGQLTNLRTLPLFM 679 (991)
Q Consensus 666 l~~L~~L~~L~l~~ 679 (991)
+..+++|++|++..
T Consensus 183 l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHCTTCCEEECCS
T ss_pred HHhCCCcCEEECcC
Confidence 44555566555543
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=2.4e-15 Score=169.17 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=69.6
Q ss_pred hhhhccCCcccEEEccCCCccc-----cCccccCCCCccEEEccCCC---Cccccchhh-------hcccCCCEEeCCCC
Q 001955 568 NKIVSSFKCLRTLNLSNSEIET-----VPSLIGKLKHLRYFNLSHNA---DIKSLPDSV-------SRLLNLQTLDLSCC 632 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~---~~~~lP~~i-------~~L~~L~~L~L~~~ 632 (991)
...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 4456788999999999998874 34557789999999999874 223556555 68899999999987
Q ss_pred CCCc----cccccccccccCcEEeecccc
Q 001955 633 DDLV----ELPRDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 633 ~~~~----~lp~~i~~L~~L~~L~l~~~~ 657 (991)
.... .+|..+.++++|++|++++|.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 6544 377788888999999998883
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.3e-12 Score=136.85 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=77.3
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
...+.++++++.++.+|..+. .+|++|+|++|.+.+..|..++++++|++|+|++|......|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999988765 689999999998544455578899999999999976544455567889999999999
Q ss_pred cccccCcCC-cCCCCCCCCCcCCccc
Q 001955 655 SCLSLTDMP-NGLGQLTNLRTLPLFM 679 (991)
Q Consensus 655 ~~~~~~~lp-~~l~~L~~L~~L~l~~ 679 (991)
+|. +..+| ..++.+++|++|++..
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCc-ccccChhHhcccCCCCEEEcCC
Confidence 884 44444 4456677777776644
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=3e-14 Score=157.05 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=118.8
Q ss_pred hhhhcC--CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc--cCccccCCCCccEEEccCCCCcccc
Q 001955 539 TALLRA--KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET--VPSLIGKLKHLRYFNLSHNADIKSL 614 (991)
Q Consensus 539 ~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~l 614 (991)
..+..+ ++++.|.+.++...... +. +.++++|++|+|++|.+.. +|..+..+++|++|++++|.+....
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~------~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 134 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPL------AE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCC------CS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH
T ss_pred HHHHhhhhccceEEEcCCccccccc------hh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH
Confidence 334444 67777776665443321 11 3457777777777777663 5666777777777777777744566
Q ss_pred chhhhcccCCCEEeCCCCCCCc--cccccccccccCcEEeeccccccCc--CCcCCCCCC-CCCcCCccccCCcCCcccc
Q 001955 615 PDSVSRLLNLQTLDLSCCDDLV--ELPRDIGKMVSLRHLAIESCLSLTD--MPNGLGQLT-NLRTLPLFMVGRKTQLSQL 689 (991)
Q Consensus 615 P~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~-~L~~L~l~~~~~~~~~~~l 689 (991)
|..++++++|++|++++|..+. .+|..+.++++|++|++++|..+.. +|..+..++ +|++|++..+...
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~------ 208 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN------ 208 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG------
T ss_pred HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc------
Confidence 7777777777777777764444 3666677777777777777733332 455566666 7777766544210
Q ss_pred cCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCc---
Q 001955 690 NGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSS--- 766 (991)
Q Consensus 690 ~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~--- 766 (991)
+. .......+..+++|+.|+++.+... .+..+..+...++|+.|.+.++.. ..+.
T Consensus 209 -----~~-----------~~~l~~~~~~~~~L~~L~l~~~~~l-----~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~ 266 (336)
T 2ast_B 209 -----LQ-----------KSDLSTLVRRCPNLVHLDLSDSVML-----KNDCFQEFFQLNYLQHLSLSRCYD-IIPETLL 266 (336)
T ss_dssp -----SC-----------HHHHHHHHHHCTTCSEEECTTCTTC-----CGGGGGGGGGCTTCCEEECTTCTT-CCGGGGG
T ss_pred -----CC-----------HHHHHHHHhhCCCCCEEeCCCCCcC-----CHHHHHHHhCCCCCCEeeCCCCCC-CCHHHHH
Confidence 00 0011112233455555555554321 111222333446666666666541 1122
Q ss_pred ccccccccCceeeccc
Q 001955 767 WLSSVTNLTMIDISIC 782 (991)
Q Consensus 767 ~l~~l~~L~~L~L~~~ 782 (991)
.+..+++|+.|++++|
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 3556777777777766
No 102
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.4e-11 Score=138.63 Aligned_cols=322 Identities=13% Similarity=0.010 Sum_probs=193.6
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~ 241 (991)
++.++||+.+++++..++...........+.+.|+|++|+||||+|+.+++. ..... ..++|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999887521100113348999999999999999999974 22221 24567777777888899999
Q ss_pred HHHHccCCCC-cccCHHHHHHHHHhHhC--CceeEEEeccccccChHHHHHHHHHhcCCC----CCcEEEEecCcHHHHH
Q 001955 242 MIRSATNRES-EKLDLDQLQERLRGEID--GKRYLLVLDDVWNENRDKWLELEALLMNGV----SGSKIVVTTRSERVAR 314 (991)
Q Consensus 242 i~~~l~~~~~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTTR~~~v~~ 314 (991)
++..++.... .......+...+.+.+. +++.+||||+++..+......+...+.... .+..+|+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988864322 12345556666665553 568899999998876556666666553321 4667888887664332
Q ss_pred HhC-------CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhc---------CCchHHHHHHHHHhh
Q 001955 315 ITS-------KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKC---------AGVPLAIRTIGRLLY 378 (991)
Q Consensus 315 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c---------~GlPLal~~~~~~L~ 378 (991)
... ....+.+++++.++..+++...+....... .--.+..+.|++.+ +|.|-.+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 211 113688999999999999988754211000 11134567788888 788754444332211
Q ss_pred ------cCC--ChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCC---CCceecHHHHHHHHHH-
Q 001955 379 ------YNN--TETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFP---KDYLIVKEQLVLLWMA- 446 (991)
Q Consensus 379 ------~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a- 446 (991)
... +.+....+..... ...+.-.+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 111 2222222222111 11234456778888888888777654 2214566666554433
Q ss_pred ---cCCCcCCCCCCChHhhHHHHHHHHHhccccccccc----CCCCCEEEEE----echhHHHHHHHhh
Q 001955 447 ---QGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEY----DEWGNIIRCK----IHDLMHDLAESVA 504 (991)
Q Consensus 447 ---~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~----~~~~~~~~~~----~Hdlv~~~a~~~~ 504 (991)
.|.. .........++++|..++++..... +..|....++ .|+++..+...+.
T Consensus 322 ~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 322 CEEYGER------PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHTTCC------CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHcCCC------CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHH
Confidence 2311 1123456788999999999987543 2223333333 3466665555443
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=5.3e-14 Score=156.43 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=62.9
Q ss_pred hhhhhccCCcccEEEccCCCccccC-----ccccCCC-CccEEEccCCCCccccchhhhcc-----cCCCEEeCCCCCCC
Q 001955 567 CNKIVSSFKCLRTLNLSNSEIETVP-----SLIGKLK-HLRYFNLSHNADIKSLPDSVSRL-----LNLQTLDLSCCDDL 635 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~~~~~lP~~i~~L-----~~L~~L~L~~~~~~ 635 (991)
++.++...++|++|+|++|.++..+ ..+.+++ +|++|+|++|.+....+..+..+ ++|++|+|++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 4556666677888888888887665 5667777 78888888887444446666665 88888888886643
Q ss_pred ccccccccc----c-ccCcEEeecccc
Q 001955 636 VELPRDIGK----M-VSLRHLAIESCL 657 (991)
Q Consensus 636 ~~lp~~i~~----L-~~L~~L~l~~~~ 657 (991)
...+..+.. + ++|++|++++|.
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 344443333 3 778888887773
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.8e-11 Score=137.32 Aligned_cols=295 Identities=13% Similarity=0.006 Sum_probs=179.1
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc----cc--ccceEEEEecCCC-Ch
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK----TH--FNLRMWVCVSDIF-DV 235 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~~-~~ 235 (991)
+..++||+.+++++..++..... ....+.+.|+|++|+||||+|+.+++..... .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988764211 1235689999999999999999999742111 11 2345788877766 88
Q ss_pred HHHHHHHHHHccCCCC--cccCHHHHHHHHHhHhCCceeEEEeccccccChHH-HHH-HHHHhcCCCCCcEEEEecCcHH
Q 001955 236 TTIVEKMIRSATNRES--EKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDK-WLE-LEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iivTTR~~~ 311 (991)
..++..++..+.+... .......+...+.+.+..++.+|||||++...... .+. +...+... .+..+|+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 8888888888743221 12334566777777787766699999997642221 222 22333222 6778999998652
Q ss_pred H----HHH--hCCCCceecCCCChHHHHHHHHHHHcc-CCCCCCChhHHHHHHHHHhhcC---CchH-HHHHHHHHh--h
Q 001955 312 V----ARI--TSKLPFHALRGLPEDMSWSLFTRMAFE-QGSEPKDSKLVQIGKDVVGKCA---GVPL-AIRTIGRLL--Y 378 (991)
Q Consensus 312 v----~~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~~~~I~~~c~---GlPL-al~~~~~~L--~ 378 (991)
. ... ......+.+++++.++..++|...+.. .....-. .+..+.|++.|+ |.|- |+.++-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 111 111237899999999999999987542 1111111 234566777777 8886 444443322 1
Q ss_pred c---CCChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCCCCceecHHHHHHHHHHcCCCcCCCC
Q 001955 379 Y---NNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSID 455 (991)
Q Consensus 379 ~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~ 455 (991)
. .-+.+.+..+.... ....+..+++.|+.+.+..+..++....+..+. +.....--..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 1 12455555554432 113466678899998888887777611101111 11111111222 11
Q ss_pred CCChHhhHHHHHHHHHhcccccccc
Q 001955 456 NQCPEDVGHEYFMSLLSRSFFQDAE 480 (991)
Q Consensus 456 ~~~~~~~~~~~l~~L~~~sll~~~~ 480 (991)
........++++.|..++++....
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 223456778899999999998654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=4.5e-13 Score=143.62 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=61.1
Q ss_pred cCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEe
Q 001955 573 SFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLA 652 (991)
Q Consensus 573 ~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 652 (991)
.+++|+.|++++|.+..++. +..+++|++|++++|. +..+|. ++++++|++|++++|. +..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 45666777777776666643 6666777777777766 555555 6667777777777643 444443 66667777777
Q ss_pred eccccccCcCCcCCCCCCCCCcCCccc
Q 001955 653 IESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 653 l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
+++| .+..+ ..+..+++|++|++..
T Consensus 119 L~~n-~i~~~-~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 119 LEHN-GISDI-NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTS-CCCCC-GGGGGCTTCCEEECCS
T ss_pred CCCC-cCCCC-hhhcCCCCCCEEEccC
Confidence 7666 33333 2455555565555543
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=3.3e-11 Score=135.39 Aligned_cols=295 Identities=14% Similarity=0.042 Sum_probs=179.7
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc---c-ccceEEEEecCCCChHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT---H-FNLRMWVCVSDIFDVTTI 238 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-F~~~~wv~~s~~~~~~~~ 238 (991)
++.++||+.+++++..++..... ....+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854311 12456889999999999999999997421110 0 123567888888888899
Q ss_pred HHHHHHHccCCCC-cccCHHHHHHHHHhHh--CCceeEEEeccccccChH--HHHHHHHHhcCC-----CCCcEEEEecC
Q 001955 239 VEKMIRSATNRES-EKLDLDQLQERLRGEI--DGKRYLLVLDDVWNENRD--KWLELEALLMNG-----VSGSKIVVTTR 308 (991)
Q Consensus 239 ~~~i~~~l~~~~~-~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivTTR 308 (991)
+..++..++...+ ......++...+.+.+ .+++.+|||||++..... ....+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999998864332 2233556666666666 356899999999764322 223333333211 34567888887
Q ss_pred cHH--------HHHHhCCCCceecCCCChHHHHHHHHHHHcc--CCCCCCChhHHHHHHHHHhhcC---Cch-HHHHHHH
Q 001955 309 SER--------VARITSKLPFHALRGLPEDMSWSLFTRMAFE--QGSEPKDSKLVQIGKDVVGKCA---GVP-LAIRTIG 374 (991)
Q Consensus 309 ~~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~--~~~~~~~~~~~~~~~~I~~~c~---GlP-Lal~~~~ 374 (991)
... +...+. ...+.+++++.++..+++...+.. ..... .+ ++.+.|++.++ |.| .++.++.
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVL-DP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 652 221111 136889999999999999887532 11111 11 34566777777 999 3333333
Q ss_pred HHhh-----cC--CChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhc-cCCCCceecHHHHHHHHHH
Q 001955 375 RLLY-----YN--NTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCA-LFPKDYLIVKEQLVLLWMA 446 (991)
Q Consensus 375 ~~L~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~a 446 (991)
.... .. -+.+.+..+.... ....+.-++..|+.+.+..+..++ ++.....+....+.+....
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2221 11 1344554444321 122355677899998888777666 4432234555544443322
Q ss_pred ----cCCCcCCCCCCChHhhHHHHHHHHHhcccccccc
Q 001955 447 ----QGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAE 480 (991)
Q Consensus 447 ----~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 480 (991)
.| +. .........+++.|...+++....
T Consensus 321 ~~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LE-----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 23 11 223456788999999999998753
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=8e-13 Score=155.55 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=59.5
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
..+++|+.|++++|.+..+| .+..|++|++|+|++|. +..+|. ++++++|+.|+|++|. +..+| .+..|++|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 34556666666666666654 36666666666666666 444554 6666666666666643 44444 46666666666
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCcccc
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l~~~ 680 (991)
++++| .+..+ +.+..|++|+.|++..+
T Consensus 115 ~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 115 SLEHN-GISDI-NGLVHLPQLESLYLGNN 141 (605)
T ss_dssp ECTTS-CCCCC-GGGGGCTTCSEEECCSS
T ss_pred EecCC-CCCCC-ccccCCCccCEEECCCC
Confidence 66666 33333 23555566666655443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2.6e-12 Score=149.41 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=64.9
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
.+|+.|+|++|.++.+|..+. ++|++|+|++|. +..+| ..+++|++|+|++|. +..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 478999999999988887663 789999999998 66888 457888899998864 555777 655 88888888
Q ss_pred cccccCcCCcCCCCCCCCCcCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l 677 (991)
+| .+..+|. .+++|++|++
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINA 147 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEEC
T ss_pred CC-cCCCCCC---cCccccEEeC
Confidence 87 3444554 3444444433
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=1.2e-12 Score=131.48 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=61.6
Q ss_pred ccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEE
Q 001955 572 SSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHL 651 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 651 (991)
..+++|+.|++++|.+..+| .+..+++|++|++++|. +..+| .++.+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34556667777777666666 46666777777777664 44443 46666777777776655444456666666666666
Q ss_pred eeccccccCcCCcCCCCCCCCCcCCc
Q 001955 652 AIESCLSLTDMPNGLGQLTNLRTLPL 677 (991)
Q Consensus 652 ~l~~~~~~~~lp~~l~~L~~L~~L~l 677 (991)
++++|......|..++.+++|++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEc
Confidence 66666433334444444444444444
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=5.9e-12 Score=126.44 Aligned_cols=147 Identities=16% Similarity=0.292 Sum_probs=113.4
Q ss_pred ceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccc-cCccccCCCC
Q 001955 521 RTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET-VPSLIGKLKH 599 (991)
Q Consensus 521 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-lp~~~~~l~~ 599 (991)
.++++.+ ..+... .++ .+..+++|++|.+.++.... ...+..+++|++|++++|.++. .|..++.+++
T Consensus 45 ~L~~L~l-~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 45 SLTYITL-ANINVT-DLT-GIEYAHNIKDLTINNIHATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp TCCEEEE-ESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--------CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred CccEEec-cCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--------chhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 4566777 333333 233 67888999999988874332 1246788999999999999885 6778899999
Q ss_pred ccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 600 LRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 600 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
|++|++++|.+....|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|++|++..
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECB
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeC
Confidence 9999999998555678889999999999999976577777 6888999999999988 455666 778888898888866
Q ss_pred cC
Q 001955 680 VG 681 (991)
Q Consensus 680 ~~ 681 (991)
+.
T Consensus 191 N~ 192 (197)
T 4ezg_A 191 QT 192 (197)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.3e-10 Score=130.57 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=174.5
Q ss_pred CCceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc---cceEEEEecCCCChHHHH
Q 001955 163 KEDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF---NLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~ 239 (991)
+..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998874211 124568999999999999999999973 33322 245678777777777888
Q ss_pred HHHHHHccCCCC-cccCHHHHHHHHHhHhC--CceeEEEeccccccC----hHHHHHHHHHhcC-CCCCcEEEEecCcHH
Q 001955 240 EKMIRSATNRES-EKLDLDQLQERLRGEID--GKRYLLVLDDVWNEN----RDKWLELEALLMN-GVSGSKIVVTTRSER 311 (991)
Q Consensus 240 ~~i~~~l~~~~~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTTR~~~ 311 (991)
..++..++.... ...+..++...+.+.+. +++.+||||+++... ......+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888877754322 12234555566665554 458999999997632 2334444444432 234556788887654
Q ss_pred HHHHh------CC-CCceecCCCChHHHHHHHHHHHccCC-CCCCChhHHHHHHHHHhhcC---CchHHHHHH-HHHhh-
Q 001955 312 VARIT------SK-LPFHALRGLPEDMSWSLFTRMAFEQG-SEPKDSKLVQIGKDVVGKCA---GVPLAIRTI-GRLLY- 378 (991)
Q Consensus 312 v~~~~------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~~~~~~~~I~~~c~---GlPLal~~~-~~~L~- 378 (991)
..... .. ...+.+++++.++..+++...+.... ...- ..++.+.|++.++ |.|..+..+ .....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22111 11 13788999999999999988653211 1111 1244566777776 999844333 22211
Q ss_pred ----c--CCChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhccCCC-C-ceecHHHHHHHHH--H--
Q 001955 379 ----Y--NNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPK-D-YLIVKEQLVLLWM--A-- 446 (991)
Q Consensus 379 ----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w~--a-- 446 (991)
. .-+.+.+..+.... ....+.-++..+|...+..+..++...+ + ..+....+.+.+. +
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 11334444333321 1234566778899888888777774322 1 1233433322221 1
Q ss_pred cCCCcCCCCCCChHhhHHHHHHHHHhccccccc
Q 001955 447 QGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDA 479 (991)
Q Consensus 447 ~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 479 (991)
.|. . .........+++.|...+++...
T Consensus 322 ~g~-~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGV-E-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTC-C-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCC-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 121 1 11234567889999999999764
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=1.4e-11 Score=129.15 Aligned_cols=151 Identities=22% Similarity=0.338 Sum_probs=72.6
Q ss_pred CceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCC
Q 001955 520 ERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLK 598 (991)
Q Consensus 520 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~ 598 (991)
..++.+.+ ..+......+..+..+++|+.|.+.++..... .+..+..+++|++|+|++|.++.+| ..+..++
T Consensus 35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------SAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCCcCCcc------CHhHhccCCcCCEEECCCCcccccChhHhcccC
Confidence 34444444 33333322333455555555555555443322 2333455555555555555555443 2345555
Q ss_pred CccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccc-cccccccCcEEeeccccccCcCC-cCCCCCCCCCcC
Q 001955 599 HLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTL 675 (991)
Q Consensus 599 ~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L 675 (991)
+|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|
T Consensus 108 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 108 QLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 55555555555 3344432 3555555555555542 333333 35555555555555552 23333 244555555555
Q ss_pred Ccccc
Q 001955 676 PLFMV 680 (991)
Q Consensus 676 ~l~~~ 680 (991)
++..+
T Consensus 185 ~l~~N 189 (251)
T 3m19_A 185 TLFGN 189 (251)
T ss_dssp ECCSC
T ss_pred EeeCC
Confidence 55443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=1.6e-12 Score=152.95 Aligned_cols=186 Identities=20% Similarity=0.228 Sum_probs=135.3
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeec
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIE 654 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 654 (991)
..+..+.+..+.+..++. +..|.+|++|++++|. +..+|. +..+++|+.|+|++|. +..+|. +..|++|++|+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence 345556677777776543 5788999999999998 788874 9999999999999965 566665 9999999999999
Q ss_pred cccccCcCCcCCCCCCCCCcCCccccCCcCCcccccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCc
Q 001955 655 SCLSLTDMPNGLGQLTNLRTLPLFMVGRKTQLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTV 734 (991)
Q Consensus 655 ~~~~~~~lp~~l~~L~~L~~L~l~~~~~~~~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 734 (991)
+| .+..+| .+..+++|+.|++..+.... + ..+..+++|+.|+++.+....
T Consensus 96 ~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l--------------------------~~l~~l~~L~~L~Ls~N~l~~- 145 (605)
T 1m9s_A 96 EN-KIKDLS-SLKDLKKLKSLSLEHNGISD-I--------------------------NGLVHLPQLESLYLGNNKITD- 145 (605)
T ss_dssp SS-CCCCCT-TSTTCTTCCEEECTTSCCCC-C--------------------------GGGGGCTTCSEEECCSSCCCC-
T ss_pred CC-CCCCCh-hhccCCCCCEEEecCCCCCC-C--------------------------ccccCCCccCEEECCCCccCC-
Confidence 98 555655 78999999999987654321 1 113345667777776654311
Q ss_pred cchhHhhhccCCCCCCcceEEEeeeCCCccCcccccccccCceeeccccccccCCCCCCCCccceeeccc
Q 001955 735 IYIDDALLEGLKPHQNLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFK 804 (991)
Q Consensus 735 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~ 804 (991)
+..+..+++|+.|.+.++....++. +..+++|+.|+|++|... .+|.+..+++|+.|+|++
T Consensus 146 -------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 146 -------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 206 (605)
T ss_dssp -------CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEECCS
T ss_pred -------chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC-CChHHccCCCCCEEEccC
Confidence 1234455778888887777666655 677788888888887543 456777788888888877
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=8.4e-12 Score=133.68 Aligned_cols=124 Identities=19% Similarity=0.304 Sum_probs=95.2
Q ss_pred hhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhc
Q 001955 541 LLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSR 620 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~ 620 (991)
...+++|+.|.+.++..... + .+..+++|++|+|++|.++.++. +..+++|++|++++|. +..+|. +++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-------~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-------Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-------T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTT
T ss_pred hhhcCcccEEEccCCCcccC-------h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hcc
Confidence 34567888888887755432 2 25778999999999999998876 8999999999999998 677765 899
Q ss_pred ccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 621 LLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 621 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
+++|++|++++|. +..+ ..+..+++|++|++++| .+..+ ..++.+++|++|++..
T Consensus 111 l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccC
Confidence 9999999999964 5555 46888999999999988 44444 4556666666666543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=5.1e-12 Score=133.13 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 574 FKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 574 ~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
+..+..++++++.++.++ .+..+++|++|++++|. +..+| .++.+++|++|+|++| .+..+|. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 445566667777776665 46667777777777776 66666 4677777777777764 3455555 677777777777
Q ss_pred ccccccCcCCcCCCCCCCCCcCCcc
Q 001955 654 ESCLSLTDMPNGLGQLTNLRTLPLF 678 (991)
Q Consensus 654 ~~~~~~~~lp~~l~~L~~L~~L~l~ 678 (991)
++| .+..+|.... ++|++|++.
T Consensus 93 ~~N-~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp CSS-CCSCCTTCCC--SSCCEEECC
T ss_pred CCC-ccCCcCcccc--CcccEEEcc
Confidence 776 3444443222 455555543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.8e-13 Score=160.06 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=28.9
Q ss_pred cCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCC
Q 001955 595 GKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCC 632 (991)
Q Consensus 595 ~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~ 632 (991)
..+++|+.|+|++|. ++.+|.+++++++|+.|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccc
Confidence 457788888888887 6788888888888888888664
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=1.8e-11 Score=119.49 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=108.4
Q ss_pred cCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhccc
Q 001955 543 RAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLL 622 (991)
Q Consensus 543 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~ 622 (991)
..++|+.|.+.++...... ++..+..+++|++|+|++|.++.+ ..+..+++|++|++++|.+.+.+|..+.+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~-----i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK-----IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB-----CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhh-----HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3478899988887654211 345568889999999999999988 7889999999999999995444888888899
Q ss_pred CCCEEeCCCCCCCcccc--ccccccccCcEEeeccccccCcCCc----CCCCCCCCCcCCccccCCc
Q 001955 623 NLQTLDLSCCDDLVELP--RDIGKMVSLRHLAIESCLSLTDMPN----GLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~l~~L~~L~~L~l~~~~~~ 683 (991)
+|++|++++| .+..+| ..+..+++|++|++++| .+..+|. .+..+++|++|++..+...
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999996 466665 68899999999999998 5566666 7889999999999776543
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=2.7e-12 Score=142.60 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=95.5
Q ss_pred cchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCC-cccEEEccCCCcccc-CccccCC-----CCccEEEccCC
Q 001955 536 EFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFK-CLRTLNLSNSEIETV-PSLIGKL-----KHLRYFNLSHN 608 (991)
Q Consensus 536 ~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~i~~l-p~~~~~l-----~~L~~L~L~~~ 608 (991)
..+..+...++|+.|.+.++....... ..+...+..++ +|++|+|++|.+... +..+..+ ++|++|+|++|
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 344445556679999999887554321 11235677888 899999999999865 4455554 99999999999
Q ss_pred CCccccchhhhc----c-cCCCEEeCCCCCCCcccccccc----c-cccCcEEeeccccccC----cCCcCCCCCC-CCC
Q 001955 609 ADIKSLPDSVSR----L-LNLQTLDLSCCDDLVELPRDIG----K-MVSLRHLAIESCLSLT----DMPNGLGQLT-NLR 673 (991)
Q Consensus 609 ~~~~~lP~~i~~----L-~~L~~L~L~~~~~~~~lp~~i~----~-L~~L~~L~l~~~~~~~----~lp~~l~~L~-~L~ 673 (991)
.+....+..++. + ++|++|+|++|......+..+. . .++|++|++++|.... .++..+..+. +|+
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 944455554444 4 8999999999764333333333 3 3699999999984332 2233334444 777
Q ss_pred cCCcccc
Q 001955 674 TLPLFMV 680 (991)
Q Consensus 674 ~L~l~~~ 680 (991)
+|++..+
T Consensus 171 ~L~Ls~n 177 (362)
T 3goz_A 171 SLNLRGN 177 (362)
T ss_dssp EEECTTS
T ss_pred EeeecCC
Confidence 7777554
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=3.2e-11 Score=140.24 Aligned_cols=40 Identities=8% Similarity=-0.184 Sum_probs=31.8
Q ss_pred CcceEEEeeeCCCccCcccccccccCceeeccccccccCC
Q 001955 750 NLKELTIIRFGGIRLSSWLSSVTNLTMIDISICIKCQYIP 789 (991)
Q Consensus 750 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~lp 789 (991)
.|+.|.+.++....+|.++..+++|+.|+|++|...+.+|
T Consensus 208 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 208 TEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 3478888888888888888888999999999887765544
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=2.8e-11 Score=123.73 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=103.2
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchh-hhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~ 622 (991)
++|+.|.+.++..... .+..|..+++|++|+|++|.++.+ |..|..+++|++|+|++|. +..+|.. +..++
T Consensus 32 ~~l~~L~l~~n~i~~i------~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI------PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCCCEE------CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCEEECCCCcCCCc------CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCC
Confidence 6788898888765542 344678889999999999999876 7789999999999999998 6777765 57899
Q ss_pred CCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCc-CCCCCCCCCcCCccccC
Q 001955 623 NLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPN-GLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~ 681 (991)
+|++|+|++|......|..+..+++|++|++++| .+..+|. .+..+++|++|++..+.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999997655555677889999999999998 4555554 58888999998886654
No 121
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=1.8e-10 Score=120.29 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=123.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 459999999999999987532 2347899999999999999999874221111100 00000000 01111
Q ss_pred HHccC-----CCCcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHH-
Q 001955 244 RSATN-----RESEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVA- 313 (991)
Q Consensus 244 ~~l~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~- 313 (991)
..... ........+.+...+... ..+++.+||+||++..+...+..+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 000111122222222221 23568999999998876677888888887766778899988764311
Q ss_pred H-HhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 314 R-ITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 314 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
. .......+.+++++.++..+++...+...+... -.+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 122234788999999999999998875433211 12456889999999999988776543
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=3.9e-11 Score=122.59 Aligned_cols=133 Identities=18% Similarity=0.101 Sum_probs=105.6
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchhhhcccC
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDSVSRLLN 623 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~ 623 (991)
..++.|.+..+...... ....|..+++|++|+|++|.++.++. .|..+++|++|+|++|.+.+..|..+.++++
T Consensus 32 ~~~~~L~L~~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLE-----ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSSCCCEEC-----CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCEEEcCCCcCCccC-----chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45788888887665431 13457889999999999999998765 7999999999999999944444456889999
Q ss_pred CCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCCCCCCCCCcCCccccCC
Q 001955 624 LQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 624 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~ 682 (991)
|++|+|++|......|..+..+++|++|++++|......|..+..+++|++|++..+..
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999999765555578899999999999999855444477899999999998876543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.6e-11 Score=117.00 Aligned_cols=127 Identities=20% Similarity=0.313 Sum_probs=101.4
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccC
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLN 623 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~ 623 (991)
.++|+.|.+.++...... .+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..++++++
T Consensus 16 ~~~l~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK-----LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTB-----CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhH-----HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 367888888887654211 345668889999999999999888 77899999999999999944448888888999
Q ss_pred CCEEeCCCCCCCcccc--ccccccccCcEEeeccccccCcCCc----CCCCCCCCCcCCcc
Q 001955 624 LQTLDLSCCDDLVELP--RDIGKMVSLRHLAIESCLSLTDMPN----GLGQLTNLRTLPLF 678 (991)
Q Consensus 624 L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~l~~L~~L~~L~l~ 678 (991)
|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|+++
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999965 55554 78899999999999998 5566665 57888899988774
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=8.1e-11 Score=119.33 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=35.1
Q ss_pred cccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCcccccc-ccccccCcEEe
Q 001955 576 CLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLA 652 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 652 (991)
+|++|+|++|.++.+|. .+..+++|++|++++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 44555555555444432 23445555555555544 3333332 3444555555555432 2233322 34444555555
Q ss_pred eccc
Q 001955 653 IESC 656 (991)
Q Consensus 653 l~~~ 656 (991)
+++|
T Consensus 107 L~~N 110 (208)
T 2o6s_A 107 LNTN 110 (208)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5444
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=7.8e-11 Score=121.24 Aligned_cols=130 Identities=25% Similarity=0.438 Sum_probs=108.2
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccch-hhhccc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPD-SVSRLL 622 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~ 622 (991)
++|+.|.+.++..... .+..+..+++|++|+|++|.+..+|. .|..+++|++|+|++|. +..+|. .+..++
T Consensus 40 ~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCCEEEcCCCccCcc------CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcch
Confidence 7899999988876543 35567889999999999999998875 57899999999999998 666665 468999
Q ss_pred CCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCc
Q 001955 623 NLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 623 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~ 683 (991)
+|++|+|++| .+..+|..+..+++|++|++++| .+..+| ..+..+++|+.|++..+...
T Consensus 113 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 113 HLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999995 56799999999999999999998 556666 45888999999998776543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3e-11 Score=118.76 Aligned_cols=131 Identities=20% Similarity=0.236 Sum_probs=105.7
Q ss_pred hhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhh-
Q 001955 540 ALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSV- 618 (991)
Q Consensus 540 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i- 618 (991)
.+.++.+|+.|.+.++.... ++.+....++|++|+|++|.++.+ ..+..+++|++|++++|. +..+|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-------i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-------IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-------CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCCch-------hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchh
Confidence 35567889999988876543 233333445999999999999988 678999999999999999 77777655
Q ss_pred hcccCCCEEeCCCCCCCccccc--cccccccCcEEeeccccccCcCCcC----CCCCCCCCcCCccccC
Q 001955 619 SRLLNLQTLDLSCCDDLVELPR--DIGKMVSLRHLAIESCLSLTDMPNG----LGQLTNLRTLPLFMVG 681 (991)
Q Consensus 619 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----l~~L~~L~~L~l~~~~ 681 (991)
+.+++|++|++++|. ++.+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+.
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899999999999964 677887 7899999999999998 45677775 8889999999886654
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=7.1e-11 Score=124.33 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=79.0
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcE
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRH 650 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 650 (991)
+..+++|++|++++|.++.+| .+..+++|++|+|++|. +..+|. ++++++|++|++++| .+..+|.... ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 467788999999999998887 68889999999999998 777777 889999999999986 4566765433 88999
Q ss_pred EeeccccccCcCCcCCCCCCCCCcCCccc
Q 001955 651 LAIESCLSLTDMPNGLGQLTNLRTLPLFM 679 (991)
Q Consensus 651 L~l~~~~~~~~lp~~l~~L~~L~~L~l~~ 679 (991)
|++++| .+..+| .++.+++|++|++..
T Consensus 111 L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 111 LFLDNN-ELRDTD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp EECCSS-CCSBSG-GGTTCTTCCEEECTT
T ss_pred EEccCC-ccCCCh-hhcCcccccEEECCC
Confidence 999988 455554 466677777776644
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=4.6e-11 Score=144.39 Aligned_cols=114 Identities=27% Similarity=0.321 Sum_probs=99.5
Q ss_pred hhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccc
Q 001955 567 CNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMV 646 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 646 (991)
++..+..++.|++|+|++|.+..+|..+..+++|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..+++|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 4667789999999999999999999888899999999999999 66999999999999999999965 568999999999
Q ss_pred cCcEEeeccccccCcCCcCCCCCCCCCcCCccccCCc
Q 001955 647 SLRHLAIESCLSLTDMPNGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 647 ~L~~L~l~~~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 683 (991)
+|++|+|++| .+..+|..++.|++|++|++..|...
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 9999999998 66799999999999999999887655
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.7e-10 Score=116.94 Aligned_cols=130 Identities=26% Similarity=0.413 Sum_probs=102.0
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchh-hhcc
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDS-VSRL 621 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L 621 (991)
.++|+.|.+.++..... .+..+..+++|++|+|++|.++.+|. .+..+++|++|++++|. +..+|.. +.++
T Consensus 27 ~~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL------PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCcEEEcCCCccCcC------ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCc
Confidence 45889998888765532 34567889999999999999998865 46889999999999998 5566654 6899
Q ss_pred cCCCEEeCCCCCCCccccc-cccccccCcEEeeccccccCcCCcC-CCCCCCCCcCCccccCC
Q 001955 622 LNLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMPNG-LGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 622 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~ 682 (991)
++|++|++++|. +..+|. .+.++++|++|++++| .+..+|.. +..+++|++|++..+..
T Consensus 100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 999999999965 555555 4788999999999998 45566654 78899999998876643
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.14 E-value=9e-10 Score=113.04 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=118.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|++..++.+.+++.... ...+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 458999999999999997542 22389999999999999999987321 11221 22333333333322221111
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHH--HHhCCCC
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVA--RITSKLP 320 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~--~~~~~~~ 320 (991)
....... ..-.+++.+||+||++.........+...+.....+.++|+||+..... .......
T Consensus 90 -~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 1110000 0012578899999998876666677777776666778899988764311 1112223
Q ss_pred ceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 321 FHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
.+.+.+++.++..+++.+.+...+... -.+..+.|++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 788999999999999998775433211 124567889999999986655444
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=3.2e-10 Score=116.63 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~ 596 (991)
.+..++.+.+ ..+......+..+..+++|+.|.+.++..... .+..|..+++|++|+|++|.++.+|. .|..
T Consensus 38 ~~~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 38 IPTNAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLGAL------PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp CCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCCCc------ChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 4567888888 55555555567788999999999999876432 34567899999999999999998865 4789
Q ss_pred CCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeeccccc
Q 001955 597 LKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIESCLS 658 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~ 658 (991)
+++|++|+|++|. +..+|..+.++++|++|+|++|. +..+| ..+..+++|++|++++|..
T Consensus 111 l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred chhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999999 78999999999999999999964 56666 4588999999999999843
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=8.8e-11 Score=114.48 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=82.8
Q ss_pred CCcceEEEeeeCCC--ccCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCCCCCCCcc
Q 001955 749 QNLKELTIIRFGGI--RLSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLE 826 (991)
Q Consensus 749 ~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~ 826 (991)
++|+.|.+.++... .+|..+..+++|+.|++++|.... ++.++.+++|++|++++ +.+....+..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~------ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSE----NRIFGGLDMLAE------ 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEES----CCCCSCCCHHHH------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcC----CcCchHHHHHHh------
Confidence 55666666666554 566666666666666666665333 25555556666666655 333222221112
Q ss_pred EEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCC-ccCCCCCCccEEE
Q 001955 827 ELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPE-EMMPNFPSIQNIS 905 (991)
Q Consensus 827 ~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~l~~L~~L~ 905 (991)
.+++|+.|++++| .++.++. ..+..+++|+.|+
T Consensus 93 ---------------------------------------------~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 93 ---------------------------------------------KLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp ---------------------------------------------HCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEE
T ss_pred ---------------------------------------------hCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEE
Confidence 2455666666665 5555542 3567788888888
Q ss_pred EecCCCCCcccc----cCCCCCCCCeEeeecCCCCCcCCCC
Q 001955 906 IELCPKLISLPQ----RLNKATTLKTVGIYDCPNMAILPEG 942 (991)
Q Consensus 906 l~~c~~l~~lp~----~l~~l~~L~~L~l~~c~~l~~lp~~ 942 (991)
+++| .++.+|. .+..+++|+.|++++|+ +..+|..
T Consensus 127 l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 127 LFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred eeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8888 5666665 67788888888888887 5556543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=4.8e-11 Score=113.71 Aligned_cols=108 Identities=23% Similarity=0.313 Sum_probs=93.1
Q ss_pred ccCCcccEEEccCCCcc--ccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCc
Q 001955 572 SSFKCLRTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLR 649 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 649 (991)
...++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++++++|++|++++|.....+|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 44588999999999998 889989999999999999998 6666 6689999999999999765555888888899999
Q ss_pred EEeeccccccCcCC--cCCCCCCCCCcCCccccCC
Q 001955 650 HLAIESCLSLTDMP--NGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 650 ~L~l~~~~~~~~lp--~~l~~L~~L~~L~l~~~~~ 682 (991)
+|++++| .+..+| ..++.+++|++|++..+..
T Consensus 92 ~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 9999999 455554 7889999999999977644
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=3.6e-10 Score=115.37 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=106.8
Q ss_pred CCCceEEEEEEecCCCCCcchhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCcc-ccC
Q 001955 518 VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSL-IGK 596 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~-~~~ 596 (991)
++..++.+.+ ..+......+..+..+++|+.|.+.++..... .+..|.++++|++|+|++|.++.+|.. |..
T Consensus 30 l~~~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 30 LPETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------APDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp CCTTCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSSCCCEE------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCcCCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc------CHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 4456788888 45555443455788899999999998876543 356688999999999999999998764 689
Q ss_pred CCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeecccc
Q 001955 597 LKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 597 l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 657 (991)
+++|++|+|++|.+.+..|..+.++++|++|+|++|. +..+| ..+..+++|++|++++|.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999999999544556789999999999999965 45555 458899999999999984
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1.4e-10 Score=128.57 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=62.8
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccchh-hh-cccCCCEEeCCCCCCCcccc-ccccccccCcEEeec
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS-VS-RLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIE 654 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~-i~-~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~ 654 (991)
++++++++.++.+|..+. ..+++|+|++|. +..+|.. +. ++++|++|+|++|. +..+| ..+.++++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence 567777777777776554 357777777777 5555543 44 67777777777754 44443 457777777777777
Q ss_pred cccccCcCCc-CCCCCCCCCcCCcccc
Q 001955 655 SCLSLTDMPN-GLGQLTNLRTLPLFMV 680 (991)
Q Consensus 655 ~~~~~~~lp~-~l~~L~~L~~L~l~~~ 680 (991)
+|. +..+|. .+..+++|++|++..+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCC
Confidence 773 444443 4566666666666443
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=3.5e-10 Score=112.78 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=82.0
Q ss_pred cccEEEccCCCccccCcc--ccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 576 CLRTLNLSNSEIETVPSL--IGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
+|++|+|++|.+..++.. +..+++|++|+|++|.+.+..|..++++++|++|+|++|......|..+.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788888888888877653 788888888888888844445778888888888888886544444455788888888888
Q ss_pred ccccccCcCCcCCCCCCCCCcCCccccCC
Q 001955 654 ESCLSLTDMPNGLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 654 ~~~~~~~~lp~~l~~L~~L~~L~l~~~~~ 682 (991)
++|......|..++.+++|++|++..+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 88855555577788888888888866543
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=4.4e-10 Score=114.75 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=106.5
Q ss_pred CCCceEEEEEEecCCCCCcc-hhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-ccc
Q 001955 518 VNERTHHISCVSGFDSSLEF-PTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIG 595 (991)
Q Consensus 518 ~~~~~r~l~~~~~~~~~~~~-~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~ 595 (991)
++..++.+.+ ..+...... ...+..+++|+.|.+.++..... .+..|.++++|++|+|++|.++.+|. .|.
T Consensus 30 ~~~~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 30 IPQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------EEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp CCTTCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred CCCCCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCCcCCEE------CHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 3445677777 444443322 23478999999999998876543 34567899999999999999998865 589
Q ss_pred CCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccc
Q 001955 596 KLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLS 658 (991)
Q Consensus 596 ~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 658 (991)
.+++|++|+|++|.+.+..|..+.++++|++|+|++|......|..+..+++|++|++++|..
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999999999995555578899999999999999765555588899999999999999854
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=4e-10 Score=131.78 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=40.3
Q ss_pred hccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccc--cccccccccC
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVEL--PRDIGKMVSL 648 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~l--p~~i~~L~~L 648 (991)
+..+++|++|+|++|.++.+|..++.+++|++|+|++|. +..+| .++++++|++|+|++|. +..+ |..++.|++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCC
Confidence 344445555555555555555555555555555555554 33344 44555555555555432 2222 4445555555
Q ss_pred cEEeeccc
Q 001955 649 RHLAIESC 656 (991)
Q Consensus 649 ~~L~l~~~ 656 (991)
++|++++|
T Consensus 536 ~~L~L~~N 543 (567)
T 1dce_A 536 VLLNLQGN 543 (567)
T ss_dssp CEEECTTS
T ss_pred CEEEecCC
Confidence 55555544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=2.1e-09 Score=117.48 Aligned_cols=285 Identities=17% Similarity=0.157 Sum_probs=162.4
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccch-hhhc--
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD-SVSR-- 620 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~-- 620 (991)
+.+++.|.+.+.-.. ..+..+-..+++|++|||++|.+......-+.++.++++.+..+. +|. .+.+
T Consensus 24 ~~~l~~L~l~g~i~~------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEEECH------HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEE
T ss_pred hCceeEEEEeccccH------HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhcccc
Confidence 446777776653111 112222222889999999999988221112233335666665553 333 4556
Q ss_pred ------ccCCCEEeCCCCCCCccccc-cccccccCcEEeeccccccCcCC-cCCCCCCCCCcCCccccCCc---CCcc--
Q 001955 621 ------LLNLQTLDLSCCDDLVELPR-DIGKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPLFMVGRK---TQLS-- 687 (991)
Q Consensus 621 ------L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l~~~~~~---~~~~-- 687 (991)
+.+|+.|+|.+ .+..++. .+.+|++|+.|++.+|. +..++ ..+..+.++..+........ ..+.
T Consensus 94 ~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999987 4566654 57889999999998874 33444 34555555554443221000 0000
Q ss_pred cccCcccCCceeEEcccCCchhhHhhhcccCCCCCceEEEecCCCCccchhHhhhccCCCCCCcceEEEeeeCCCccCcc
Q 001955 688 QLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGLQSLVLQWDANKTVIYIDDALLEGLKPHQNLKELTIIRFGGIRLSSW 767 (991)
Q Consensus 688 ~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~ 767 (991)
.+..+..+...+.+..... ........-..+.++..+.+.+.....-...
T Consensus 171 ~f~~~~~L~~~i~~~~~~~------------------------------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 220 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGK------------------------------LEDEIMKAGLQPRDINFLTIEGKLDNADFKL 220 (329)
T ss_dssp CEEESCCCEEEEEECTTCC------------------------------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHH
T ss_pred ccccccccceeEEecCCCc------------------------------HHHHHhhcccCccccceEEEeeeecHHHHHH
Confidence 0111111211111111111 1111222222334556666655422111111
Q ss_pred cc-cccccCceeeccccccccCC--CCCCCCccceeeccccccceeccCCCCCCCCCCCCcc-EEeeccccccccccccC
Q 001955 768 LS-SVTNLTMIDISICIKCQYIP--ELDQLPSLKRLRLFKLSALEYISSSSPPSTTIFPSLE-ELRIFACPELKGWWRTD 843 (991)
Q Consensus 768 l~-~l~~L~~L~L~~~~~~~~lp--~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~~~~ 843 (991)
+. .+++|+.|+|.+|. ...+| .+..+++|+.|++.+ ++..++ ...+.++++|+ .+.+.+ +++.+...
T Consensus 221 l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~---~~aF~~~~~L~~~l~l~~--~l~~I~~~- 291 (329)
T 3sb4_A 221 IRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIG---QRVFSNCGRLAGTLELPA--SVTAIEFG- 291 (329)
T ss_dssp HHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCEEEEECT--TCCEECTT-
T ss_pred HHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceeh---HHHhhCChhccEEEEEcc--cceEEchh-
Confidence 22 47899999999875 44555 588889999999977 244443 35566788898 898876 44433221
Q ss_pred CCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEE
Q 001955 844 GSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISI 906 (991)
Q Consensus 844 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l 906 (991)
.+..+++|+.|++.++ .++.++...|.++++|+.|+.
T Consensus 292 -------------------------aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 -------------------------AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -------------------------TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred -------------------------hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 2557889999998776 788898888999999998874
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=5.4e-11 Score=143.81 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=93.6
Q ss_pred hhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchh
Q 001955 538 PTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS 617 (991)
Q Consensus 538 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~ 617 (991)
+..+..+++|+.|.+.++.... ++..+.++++|++|+|++|.++.+|..|+.|++|++|+|++|. +..+|..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-------l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-------ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-------CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred hhhhccCCCCcEEECCCCCCCC-------CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 4556778889999888876542 2333347889999999999999889889999999999999998 6688999
Q ss_pred hhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCC
Q 001955 618 VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGL 666 (991)
Q Consensus 618 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l 666 (991)
+++|++|++|+|++| .++.+|..+++|++|++|+|++|.....+|..+
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999999999986 467889889999999999999886555555444
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.00 E-value=7.8e-10 Score=122.51 Aligned_cols=130 Identities=21% Similarity=0.209 Sum_probs=100.6
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhc-cCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-hhhcc
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVS-SFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD-SVSRL 621 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L 621 (991)
..++.|.+.++..... .+..+. ++++|++|+|++|.++.++ ..|..+++|++|+|++|. +..+|. .+.++
T Consensus 39 ~~l~~L~Ls~N~l~~l------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNNLSRL------RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSCCCEE------CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred CCCCEEECCCCCCCcc------ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCC
Confidence 4588888888766543 234455 8899999999999999876 468999999999999998 555554 57889
Q ss_pred cCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCcCC----CCCCCCCcCCccccCC
Q 001955 622 LNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPNGL----GQLTNLRTLPLFMVGR 682 (991)
Q Consensus 622 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l----~~L~~L~~L~l~~~~~ 682 (991)
++|++|+|++|......|..+..+++|++|++++| .+..+|..+ ..+++|+.|++..+..
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 99999999997655455778899999999999988 666777664 5688888888876544
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=109.38 Aligned_cols=105 Identities=28% Similarity=0.371 Sum_probs=77.5
Q ss_pred CcccEEEccCCCccccCccccCCCCccEEEccCCCCccccc-hhhhcccCCCEEeCCCCCCCccccccccccccCcEEee
Q 001955 575 KCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLP-DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAI 653 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 653 (991)
++|++|+|++|.++.+|..|.++++|++|+|++|. +..+| ..+.++++|++|+|++|......|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46888888888888888888888888888888888 44444 46788888888888886543334456788888888888
Q ss_pred ccccccCcCCc-CCCCCCCCCcCCccccC
Q 001955 654 ESCLSLTDMPN-GLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 654 ~~~~~~~~lp~-~l~~L~~L~~L~l~~~~ 681 (991)
++| .+..+|. .+..+++|+.|++..+.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 887 4556665 46778888888776543
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=4.2e-10 Score=110.55 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred hccCCcccEEEccCCCccccCccccCCC-CccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccc-cccccC
Q 001955 571 VSSFKCLRTLNLSNSEIETVPSLIGKLK-HLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDI-GKMVSL 648 (991)
Q Consensus 571 ~~~~~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L 648 (991)
+.++++|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..++++++|++|++++|. +..+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 4678899999999999998865 44554 99999999999 6667 569999999999999965 66777665 899999
Q ss_pred cEEeeccccccCcCCc--CCCCCCCCCcCCccccCC
Q 001955 649 RHLAIESCLSLTDMPN--GLGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 649 ~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~~~ 682 (991)
++|++++| .+..+|. .++.+++|+.|++..+..
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 99999999 5677886 788999999999876643
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=2.1e-09 Score=117.22 Aligned_cols=268 Identities=15% Similarity=0.076 Sum_probs=146.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|++..++.+..++...... ......+.|+|++|+|||++|+.+++. ... ..+++..+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~-------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKP-------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSH--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCCh--------
Confidence 45999999999888877531100 012356889999999999999999873 221 1234433322221
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC------------------CCcEEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV------------------SGSKIVV 305 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 305 (991)
.++...+...+ .++.+|+||++..........+...+.... ++.++|.
T Consensus 78 -------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 78 -------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 12222222211 356799999998765555555655554321 2356777
Q ss_pred ecCcHHHH-H-HhC-CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHhhcC--
Q 001955 306 TTRSERVA-R-ITS-KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLLYYN-- 380 (991)
Q Consensus 306 TTR~~~v~-~-~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L~~~-- 380 (991)
||...... . ... ....+.+.+++.++..+++.+.+...+... -.+....|++.+.|.|-.+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 76643211 0 011 123688999999999999988775433211 13556889999999998877665543211
Q ss_pred ------CChHHHHHHhhhhccCCCCCccchhhhhhhhccCCChhhHHHHhHhc-cCCCC----------ceecHHHHHH-
Q 001955 381 ------NTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCA-LFPKD----------YLIVKEQLVL- 442 (991)
Q Consensus 381 ------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li~- 442 (991)
-+.+....+... +...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 112222222211 12233445554455544433 22211 0123333222
Q ss_pred ---HHHHcCCCcCCCCCCChHhhHHHHHH-HHHhcccccc
Q 001955 443 ---LWMAQGFLGLSIDNQCPEDVGHEYFM-SLLSRSFFQD 478 (991)
Q Consensus 443 ---~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sll~~ 478 (991)
+-+..|++.....+....+.|.+||. ++++|+|+|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34456777654444556677788886 7888888764
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=4.9e-09 Score=114.31 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=117.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++... ...+ ...+++..+....... ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 458999999999999987532 22389999999999999999987421 1111 1233443333222211 1111
Q ss_pred HHHccCCCCcccCHHHHHHHHHhHh-CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHH-H-HHhCCC
Q 001955 243 IRSATNRESEKLDLDQLQERLRGEI-DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERV-A-RITSKL 319 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~-~~~~~~ 319 (991)
+..+... ...+ .+++.++|+||++......+..+...+.....++++|+||+...- . ......
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 1111100 0011 356889999999886666666677777666667888888876431 1 111223
Q ss_pred CceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHHHH
Q 001955 320 PFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTIGR 375 (991)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~~~ 375 (991)
..+.+.+++.++..+++...+...+... -.+....|++.|+|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3788999999999999988764332211 12456889999999995 4444443
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=3.9e-09 Score=105.07 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=86.6
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccccccccccCcEEeecccc
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCL 657 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 657 (991)
++++++++.++.+|..+. ++|++|+|++|. +..+|..+.++++|++|+|++|......|..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998764 689999999999 78999999999999999999976444444669999999999999995
Q ss_pred ccCcCC-cCCCCCCCCCcCCccccCCc
Q 001955 658 SLTDMP-NGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 658 ~~~~lp-~~l~~L~~L~~L~l~~~~~~ 683 (991)
+..+| ..+..+++|++|++..+...
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 55555 56899999999999776543
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=3.1e-09 Score=105.88 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=86.7
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccchh--hhcccCCCEEeCCCCCCCccccccccccccCcEEeecc
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS--VSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIES 655 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 655 (991)
++++++++.++.+|..+.. +|++|++++|. +..+|.. ++++++|++|+|++|...+..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987754 99999999998 7777753 89999999999999766555688899999999999999
Q ss_pred ccccCcCCcCCCCCCCCCcCCccccCCc
Q 001955 656 CLSLTDMPNGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 656 ~~~~~~lp~~l~~L~~L~~L~l~~~~~~ 683 (991)
|......|..++.+++|++|++..+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 9544444456899999999999776543
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=3.1e-11 Score=121.29 Aligned_cols=108 Identities=27% Similarity=0.362 Sum_probs=80.4
Q ss_pred hhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccccccccc
Q 001955 568 NKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKMVS 647 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 647 (991)
+..+..+++|++|+|++|.++.+| .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..+| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCC
Confidence 345677888888888888888777 77888888888888887 6678877777788888888885 455566 5778888
Q ss_pred CcEEeeccccccCcCCc--CCCCCCCCCcCCcccc
Q 001955 648 LRHLAIESCLSLTDMPN--GLGQLTNLRTLPLFMV 680 (991)
Q Consensus 648 L~~L~l~~~~~~~~lp~--~l~~L~~L~~L~l~~~ 680 (991)
|++|++++| .+..+|. .+..+++|++|++..+
T Consensus 117 L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 888888877 4444443 5677777777777544
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=3.1e-09 Score=103.73 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=75.6
Q ss_pred cEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc-ccccccCcEEeeccc
Q 001955 578 RTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAIESC 656 (991)
Q Consensus 578 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 656 (991)
+.++++++.+..+|..+. .+|++|+|++|.+.+..|..++++++|++|+|++| .+..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 678888888888887664 78888888888843334667788888888888885 45666665 478888888888887
Q ss_pred cccCcCCcC-CCCCCCCCcCCccccCCc
Q 001955 657 LSLTDMPNG-LGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 657 ~~~~~lp~~-l~~L~~L~~L~l~~~~~~ 683 (991)
.+..+|.. +..+++|++|++..+...
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55566654 778888888888766544
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=5.6e-11 Score=119.38 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=106.7
Q ss_pred chhhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccch
Q 001955 537 FPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPD 616 (991)
Q Consensus 537 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~ 616 (991)
++..+..+++|+.|.+.++.... ++ .+..+++|++|+|++|.++.+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-------l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~- 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-------IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-------CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-------cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-
Confidence 34578899999999998876544 23 5678899999999999999999988889999999999998 77788
Q ss_pred hhhcccCCCEEeCCCCCCCccccc--cccccccCcEEeeccccccCcCCcC----------CCCCCCCCcCCc
Q 001955 617 SVSRLLNLQTLDLSCCDDLVELPR--DIGKMVSLRHLAIESCLSLTDMPNG----------LGQLTNLRTLPL 677 (991)
Q Consensus 617 ~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----------l~~L~~L~~L~l 677 (991)
.++++++|++|++++|. +..+|. .+..+++|++|++++|......|.. +..+++|+.|+.
T Consensus 110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 59999999999999964 566554 7899999999999999554444432 677888888874
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=9.4e-09 Score=99.98 Aligned_cols=104 Identities=25% Similarity=0.335 Sum_probs=79.8
Q ss_pred cccEEEccCCCccccCccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccc-ccccccCcEEeec
Q 001955 576 CLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAIE 654 (991)
Q Consensus 576 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~ 654 (991)
..++|+++++.++.+|..+. .+|++|+|++|.+.+..|..+.++++|++|+|++|. +..+|.. +.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 35788999998888887664 788999999988333346678889999999999864 5566654 5788999999998
Q ss_pred cccccCcCCc-CCCCCCCCCcCCccccCCc
Q 001955 655 SCLSLTDMPN-GLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 655 ~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~ 683 (991)
+| .+..+|. .+..+++|++|++..+...
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88 5566665 4788888998888776544
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.6e-08 Score=99.24 Aligned_cols=105 Identities=30% Similarity=0.512 Sum_probs=71.6
Q ss_pred CcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccc-cccccccCcEE
Q 001955 575 KCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRHL 651 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L 651 (991)
++|++|++++|.++.+|. .+..+++|++|++++|. +..+|.. ++++++|++|++++|. +..+|. .+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence 567778888777776654 45777788888888777 5555543 5777788888887754 444444 35777788888
Q ss_pred eeccccccCcCCcC-CCCCCCCCcCCccccCC
Q 001955 652 AIESCLSLTDMPNG-LGQLTNLRTLPLFMVGR 682 (991)
Q Consensus 652 ~l~~~~~~~~lp~~-l~~L~~L~~L~l~~~~~ 682 (991)
++++| .+..+|.. +..+++|++|++..+..
T Consensus 106 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 88777 44566654 46677777777765543
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=1.7e-08 Score=99.15 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=88.9
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccCc-cccCCCCccEEEccCCCCccccch-hhhcc
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPS-LIGKLKHLRYFNLSHNADIKSLPD-SVSRL 621 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L 621 (991)
.++|+.|.+.++..... .+..+..+++|++|+|++|.++.+|. .+..+++|++|++++|. +..+|. .+.++
T Consensus 27 ~~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCcccEe------CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCC
Confidence 36899999988765532 34567889999999999999998875 47899999999999999 666665 46899
Q ss_pred cCCCEEeCCCCCCCcccccc-ccccccCcEEeecccccc
Q 001955 622 LNLQTLDLSCCDDLVELPRD-IGKMVSLRHLAIESCLSL 659 (991)
Q Consensus 622 ~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~ 659 (991)
++|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999964 5677766 578999999999998543
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=1.6e-08 Score=110.34 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=159.5
Q ss_pred CCcccEEEccCCCccccCccccC-CCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCccccc-cccc-------
Q 001955 574 FKCLRTLNLSNSEIETVPSLIGK-LKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPR-DIGK------- 644 (991)
Q Consensus 574 ~~~L~~L~L~~~~i~~lp~~~~~-l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~------- 644 (991)
+.+++.|.++++--..-...+.. +++|++|||++|. +......-+.++.+..+.+..+ .+|. .+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcce-eEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 45788888886421110122333 8899999999998 5411111122333455555543 3443 3566
Q ss_pred -cccCcEEeeccccccCcCCc-CCCCCCCCCcCCccccCCcC-CcccccCcccCCceeEEcccCCchhhHhhhcccCCCC
Q 001955 645 -MVSLRHLAIESCLSLTDMPN-GLGQLTNLRTLPLFMVGRKT-QLSQLNGLNKLRGSLRIENLGEKQNSRLANLEAKEGL 721 (991)
Q Consensus 645 -L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l~~~~~~~-~~~~l~~l~~L~~~l~i~~~~~~~~~~~~~l~~~~~L 721 (991)
+++|+.|++.+ .+..++. .+..+++|+.+.+..+.... .-..+....++ ..+.. .. .... .....+
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l---~~l~~-~~--~~~~---~~~~~i 167 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTA---IFIPL-GS--SDAY---RFKNRW 167 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCE---EEECT-TC--THHH---HTSTTT
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCce---EEecC-cc--hhhh---hccccc
Confidence 99999999987 4566664 48889999999886654320 00001111100 00000 00 0000 000001
Q ss_pred CceEEEecCCCCccchhHhhhccCCCCCCcc-eEEEeeeCCCccCcccc----cccccCceeeccccccccCCCC-CCCC
Q 001955 722 QSLVLQWDANKTVIYIDDALLEGLKPHQNLK-ELTIIRFGGIRLSSWLS----SVTNLTMIDISICIKCQYIPEL-DQLP 795 (991)
Q Consensus 722 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~lp~~l~----~l~~L~~L~L~~~~~~~~lp~l-~~l~ 795 (991)
....+ ..+..|+ .+.+.. ...++..+. ...++..+.+.++-.......+ ..++
T Consensus 168 ~~~~f-------------------~~~~~L~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~ 226 (329)
T 3sb4_A 168 EHFAF-------------------IEGEPLETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP 226 (329)
T ss_dssp TTSCE-------------------EESCCCEEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred ccccc-------------------ccccccceeEEecC--CCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC
Confidence 00001 1122333 122211 122332221 3567777777665221111111 1268
Q ss_pred ccceeeccccccceeccCCCCCCCCCCCCccEEeeccccccccccccCCCccccCCCCCCCCccceeecccCCCCCCCCc
Q 001955 796 SLKRLRLFKLSALEYISSSSPPSTTIFPSLEELRIFACPELKGWWRTDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSK 875 (991)
Q Consensus 796 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~ 875 (991)
+|+.|++.+ +.+.......+..+++|+.|.+.++ ++.+... .+..+++
T Consensus 227 ~L~~l~L~~----n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~--------------------------aF~~~~~ 274 (329)
T 3sb4_A 227 NLVSLDISK----TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR--------------------------VFSNCGR 274 (329)
T ss_dssp TCCEEECTT----BCCCEECTTTTTTCTTCCEEECCTT--CCEECTT--------------------------TTTTCTT
T ss_pred CCeEEECCC----CCcceecHhhhhCCCCCCEEECCcc--cceehHH--------------------------HhhCChh
Confidence 999999987 3333333456778999999999875 4443221 2457788
Q ss_pred cC-eeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccc-cCCCCCCCCeEee
Q 001955 876 LK-SLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQ-RLNKATTLKTVGI 930 (991)
Q Consensus 876 L~-~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 930 (991)
|+ .|++.+ .++.++...|.++++|+.|++.++ .++.++. .|.++++|+.++.
T Consensus 275 L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred ccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 98 999987 788888888999999999999887 6888875 6788889988863
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=4.9e-08 Score=106.48 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=116.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccc-cceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF-NLRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+.+..+....... .+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~-- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IR-- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-TH--
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HH--
Confidence 45899999999999988753 223489999999999999999997411 1111 1123333222111000 00
Q ss_pred HHHccCCCCcccCHHHHHHHHHhH--h-CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHH-HH-HhC
Q 001955 243 IRSATNRESEKLDLDQLQERLRGE--I-DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERV-AR-ITS 317 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v-~~-~~~ 317 (991)
......... + .+++.++|+||++......+..+...+.....++++|+||....- .. ...
T Consensus 95 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 95 ---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp ---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred ---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 111111110 1 256889999999887667777787777666677889988876431 11 111
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHHHh
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGRLL 377 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~~L 377 (991)
....+.+.+++.++..+++...+...+... -.+....|++.++|.|-.+..+...+
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 123688999999999999988765433211 13556789999999998765554433
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.1e-07 Score=100.81 Aligned_cols=173 Identities=10% Similarity=0.024 Sum_probs=105.7
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccc---cc--cceEEEEecCCCChHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKT---HF--NLRMWVCVSDIFDVTTIV 239 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F--~~~~wv~~s~~~~~~~~~ 239 (991)
.+.|||+++++|...|...-. ......+.|+|++|+|||++|+.|++...... .. -..+++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988875322 23556889999999999999999998532111 11 135677777778889999
Q ss_pred HHHHHHccCCCCcc-cCHHHHHHHHHhH--hCCceeEEEeccccccChHHHHHHHHHhcC-CCCCc--EEEEecCcHH--
Q 001955 240 EKMIRSATNRESEK-LDLDQLQERLRGE--IDGKRYLLVLDDVWNENRDKWLELEALLMN-GVSGS--KIVVTTRSER-- 311 (991)
Q Consensus 240 ~~i~~~l~~~~~~~-~~~~~l~~~l~~~--L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTTR~~~-- 311 (991)
..|++++.+..... ...+.+...+... -.++++++|||+++.-. .-+.+...+.. ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999996543222 2233344333332 24678999999997642 11222222211 01222 3334443321
Q ss_pred ---H----HHHhCCCCceecCCCChHHHHHHHHHHHcc
Q 001955 312 ---V----ARITSKLPFHALRGLPEDMSWSLFTRMAFE 342 (991)
Q Consensus 312 ---v----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 342 (991)
+ ...+. ...+.+++++.++-.+++.+++-.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11221 136889999999999999887643
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=5.7e-08 Score=94.69 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=72.8
Q ss_pred CcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCcccccc-ccccccCcEE
Q 001955 575 KCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPRD-IGKMVSLRHL 651 (991)
Q Consensus 575 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L 651 (991)
++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+|.. +.++++|++|+|++| .+..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 7899999999999987 5688999999999999998 7777775 589999999999996 46677765 8899999999
Q ss_pred eeccccccCcCCc
Q 001955 652 AIESCLSLTDMPN 664 (991)
Q Consensus 652 ~l~~~~~~~~lp~ 664 (991)
++++| .+...|.
T Consensus 111 ~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 111 YLYNN-PWDCECR 122 (174)
T ss_dssp ECCSS-CBCTTBG
T ss_pred EeCCC-Ccccccc
Confidence 99998 3444443
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.62 E-value=3.5e-07 Score=101.72 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=117.4
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+++.......+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999987532 234788999999999999999986322111110 00000000111111
Q ss_pred HHc-------cCC-CCcccCHHHHHHHHHhH-hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-H-
Q 001955 244 RSA-------TNR-ESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-V- 312 (991)
Q Consensus 244 ~~l-------~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v- 312 (991)
... ... ........++...+... ..+++.++|+||++..+...+..+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 000 01112233333322211 235678999999987766777778877776666777777776432 1
Q ss_pred HHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 313 ARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 313 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
.........+.+.+++.++..+++.+.+...+... -.+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11122234788999999999999987664322211 124567899999999988766543
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.59 E-value=1.2e-07 Score=92.16 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=69.8
Q ss_pred CCcccEEEccCCCcccc-CccccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCCCCccccc-cccccccCcE
Q 001955 574 FKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCDDLVELPR-DIGKMVSLRH 650 (991)
Q Consensus 574 ~~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~ 650 (991)
.++|++|+|++|.++.+ |..|..+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|. .+..+++|++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 37899999999999987 5679999999999999999 6667664 5899999999999964 566665 4889999999
Q ss_pred Eeecccc
Q 001955 651 LAIESCL 657 (991)
Q Consensus 651 L~l~~~~ 657 (991)
|++++|.
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999984
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.7e-07 Score=103.19 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=52.6
Q ss_pred EEccCC-CccccCccccCCCCccEEEccC-CCCccccc-hhhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccc
Q 001955 580 LNLSNS-EIETVPSLIGKLKHLRYFNLSH-NADIKSLP-DSVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 580 L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~~~~~lP-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 656 (991)
++++++ .++.+|. +..+.+|++|+|++ |. +..+| ..|++|++|++|+|++|...+..|..+.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5666666 66666666666664 55 44444 34566666666666664432333334566666666666665
Q ss_pred cccCcCCcCCCCCCCCCcCCcccc
Q 001955 657 LSLTDMPNGLGQLTNLRTLPLFMV 680 (991)
Q Consensus 657 ~~~~~lp~~l~~L~~L~~L~l~~~ 680 (991)
.+..+|..+.....|+.|++..+
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSS
T ss_pred -ccceeCHHHcccCCceEEEeeCC
Confidence 44455544333333555555444
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.50 E-value=5.1e-07 Score=97.96 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=113.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|++..++.+..++... ....+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------ 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH------
Confidence 35899999999998887653 222389999999999999999987311 11111 12333433321110
Q ss_pred HHHccCCCCcccCHHHHHHHHHhH--h-CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HH-HHhC
Q 001955 243 IRSATNRESEKLDLDQLQERLRGE--I-DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VA-RITS 317 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~-~~~~ 317 (991)
........+... + .+++.++|+|+++.........+...+.....+.++|+||.... +. ....
T Consensus 84 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 84 ------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 111111111111 1 25688999999987655555666666655556778888876543 11 1112
Q ss_pred CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 318 KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
....+.+.+++.++..+++...+...+... -.+....|++.++|.+-.+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234788999999999999988765433211 124567889999999986654433
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=9.2e-06 Score=90.44 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=27.3
Q ss_pred CCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCC
Q 001955 872 PFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 872 ~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 934 (991)
.+++|+.+.+.+ .++.++...|.++++|+.|.|..+ ++.++ ..+.++ +|+.|.+.++.
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 334444444442 244444445555555555555332 44443 234444 55555555543
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.45 E-value=6.7e-06 Score=89.79 Aligned_cols=178 Identities=12% Similarity=0.094 Sum_probs=108.7
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|++..++.+..++...... ......|.|+|++|+|||++|+.+++. ....| +.+..+....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 45999999999998888642100 113456899999999999999999863 22222 2233222111
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC------------------CCcEEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV------------------SGSKIVV 305 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 305 (991)
.......+.. ..+..+|+||++..........+...+.... ++..+|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1122222222 2466899999998776555566666655432 1245666
Q ss_pred ecCcHHH-H-HHh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 306 TTRSERV-A-RIT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 306 TTR~~~v-~-~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
||..... . ... .....+.+.+++.++..+++.+.+...+.. --.+....|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6664321 1 111 122478899999999999998876543321 123556788889999995554443
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.43 E-value=5.6e-07 Score=93.14 Aligned_cols=174 Identities=11% Similarity=0.033 Sum_probs=100.8
Q ss_pred ceeecc---hhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 165 DIIGRD---GDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 165 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
+++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+.++...+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 466633 4555566655532 3457889999999999999999873 2222334566665432110
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHH--HHHHHHHhcCC-CCC-cEEEEecCc--------
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDK--WLELEALLMNG-VSG-SKIVVTTRS-------- 309 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTTR~-------- 309 (991)
+. ..+ +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+.
T Consensus 95 ----~~-------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ----ST-------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----CG-------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----HH-------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00 000 011 356799999997653322 23333332211 112 247777763
Q ss_pred -HHHHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 310 -ERVARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 310 -~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
..+...+.....+.+++++.++..+++...+...+... -.+....|++.++|.+-.+..+..
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 22222222225788999999999999988775333211 135567889999998876655433
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=7.7e-07 Score=88.41 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=38.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998753 3346789999999999999999874
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=4.5e-06 Score=91.89 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=114.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.+..+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 458999999999999987542 22389999999999999999997421111121 223333333222222 2222
Q ss_pred HHHccCC-CCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-----HHHHh
Q 001955 243 IRSATNR-ESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-----VARIT 316 (991)
Q Consensus 243 ~~~l~~~-~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-----v~~~~ 316 (991)
+...... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +...+
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2111100 0000000 00011123556999999987666666667777666555667777775432 22222
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
..+.+.+++.++..+.+...+...+... . .+..+.|++.++|.|-.+..+.
T Consensus 185 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i-~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 ---SKFRFKALDASNAIDRLRFISEQENVKC-D---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHTTTCCC-C---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ---ceEEeCCCCHHHHHHHHHHHHHHhCCCC-C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 3678999999999999988764433211 1 3566889999999998655443
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=2.4e-05 Score=87.12 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=38.3
Q ss_pred CCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc-ccCCCCC-CCCeEeeec
Q 001955 870 EPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP-QRLNKAT-TLKTVGIYD 932 (991)
Q Consensus 870 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~-~L~~L~l~~ 932 (991)
+..+++|+.|.+.. +++.+....|.++ +|+.|++.++ .+..++ ..+..++ +++.|++..
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 34556677777744 3667777777778 8888888887 444444 3355553 677777754
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=1.9e-05 Score=88.24 Aligned_cols=125 Identities=11% Similarity=0.077 Sum_probs=61.4
Q ss_pred hhhhcCCCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-
Q 001955 539 TALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD- 616 (991)
Q Consensus 539 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~- 616 (991)
..|..+.+|+++.+... .. . + -...|.+|++|+.++|..+ ++.++ ..|.++.+|+.+.+..+ +..++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~-I----~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~ 134 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-E-I----GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVE 134 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-E-E----CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTT
T ss_pred HHhhCCCCceEEEeCCC-cc-C-c----chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecce
Confidence 34566666666655322 11 0 0 1334566666666666543 44443 34566666666555443 222222
Q ss_pred hhhcccCCCEEeCCCCCCCccccccccccccCcEEeeccccccCcCCc-CCCCCCCCCcCCc
Q 001955 617 SVSRLLNLQTLDLSCCDDLVELPRDIGKMVSLRHLAIESCLSLTDMPN-GLGQLTNLRTLPL 677 (991)
Q Consensus 617 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~lp~-~l~~L~~L~~L~l 677 (991)
.+.++..+......... ..-...+.++++|+.+.+.++ ...++. .+..+.+|+.+.+
T Consensus 135 aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred eeecccccccccCcccc--ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEc
Confidence 33344333333222211 111234667777887777543 233433 3556677777665
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=9e-07 Score=97.26 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=69.0
Q ss_pred hhhhccCCcccEEEccC-CCccccC-ccccCCCCccEEEccCCCCccccchhhhcccCCCEEeCCCCCCCcccccccccc
Q 001955 568 NKIVSSFKCLRTLNLSN-SEIETVP-SLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNLQTLDLSCCDDLVELPRDIGKM 645 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 645 (991)
+. +..+++|+.|+|++ |.+..+| ..|..|++|++|+|++|.+.+..|..|++|++|++|+|++| .+..+|..+...
T Consensus 25 p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 102 (347)
T 2ifg_A 25 HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQG 102 (347)
T ss_dssp TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHccc
Confidence 44 77888899999986 8898876 57889999999999999844445557889999999999985 466777665444
Q ss_pred ccCcEEeecccc
Q 001955 646 VSLRHLAIESCL 657 (991)
Q Consensus 646 ~~L~~L~l~~~~ 657 (991)
.+|+.|++.+|.
T Consensus 103 ~~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LSLQELVLSGNP 114 (347)
T ss_dssp CCCCEEECCSSC
T ss_pred CCceEEEeeCCC
Confidence 449999998873
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.24 E-value=1.1e-05 Score=90.88 Aligned_cols=161 Identities=20% Similarity=0.152 Sum_probs=97.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCcccccccc--ceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN--LRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
...+.|+|++|+||||||+.+++. ....+. .+++++.. .+..++...+... ... .+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 557899999999999999999983 333332 23455433 2344444443321 111 2233333
Q ss_pred CceeEEEeccccccCh--HHHHHHHHHhcC-CCCCcEEEEecCc---------HHHHHHhCCCCceecCCCChHHHHHHH
Q 001955 269 GKRYLLVLDDVWNENR--DKWLELEALLMN-GVSGSKIVVTTRS---------ERVARITSKLPFHALRGLPEDMSWSLF 336 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 336 (991)
.+.-+|+|||++.... .....+...+.. ...|..||+||.+ ..+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999976432 222334333322 1356788888875 233333443456789999999999999
Q ss_pred HHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHH
Q 001955 337 TRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRT 372 (991)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~ 372 (991)
.+.+...+.... + ++...|++.+.|.+-.+.-
T Consensus 273 ~~~~~~~~~~i~-~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHGELP-E---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTCCCC-T---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCCCCC-H---HHHHHHHHhcCCCHHHHHH
Confidence 887753322111 1 3457788899998865443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=1.1e-05 Score=85.67 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=101.0
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++++.+.+...... .....+-+.|+|++|+|||++|+.+++. .... .+.+..+....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH--
Confidence 45899999999998877431000 0013346899999999999999999973 2221 12233222110
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHHh---c--CCCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEALL---M--NGVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~--~~~~g 300 (991)
.. .......+...+......++.+|+|||++.. .......+...+ . ....+
T Consensus 90 ------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 ------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp ------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred ------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 00 0011112222223333356689999999642 111122233222 2 12346
Q ss_pred cEEEEecCcHHHHH--Hh---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC-chHHHHHH
Q 001955 301 SKIVVTTRSERVAR--IT---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG-VPLAIRTI 373 (991)
Q Consensus 301 s~iivTTR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLal~~~ 373 (991)
..||.||....... .. .....+.+++.+.++..++|...+...... ...+ ...+++.+.| .|-.+..+
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCC----HHHHHHHcCCCCHHHHHHH
Confidence 67888887543211 11 122368899999999999998887543321 1112 3567777777 44344433
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=9.2e-06 Score=89.37 Aligned_cols=197 Identities=10% Similarity=0.106 Sum_probs=108.0
Q ss_pred CceeecchhHHHHHHHH-hCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCc---ccc-ccccc---------------
Q 001955 164 EDIIGRDGDKNEIIDRL-LDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDE---DVK-THFNL--------------- 223 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~-~~F~~--------------- 223 (991)
.+++|.+..++.+..++ .... ... +.|+|++|+||||+|+.++... ... -.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899998888888877 3321 223 8999999999999999887621 100 00110
Q ss_pred -----eEEEEecCCC-ChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC
Q 001955 224 -----RMWVCVSDIF-DVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG 297 (991)
Q Consensus 224 -----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (991)
.+.+..+... ......++++..+..... ..... .+.. +.+++-++|||++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 000012222222211000 00000 0000 1236679999999887666667777777655
Q ss_pred CCCcEEEEecCcHH-HH-HHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHHH
Q 001955 298 VSGSKIVVTTRSER-VA-RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIGR 375 (991)
Q Consensus 298 ~~gs~iivTTR~~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~~ 375 (991)
..+..+|++|.+.. +. ........+.+.+++.++..+.+...+...+..... .+....|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778888876532 11 111222578899999999999998876443321110 24567889999999876655543
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=1.3e-05 Score=88.80 Aligned_cols=195 Identities=12% Similarity=0.091 Sum_probs=107.6
Q ss_pred CceeecchhHHH---HHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe----cCCCChH
Q 001955 164 EDIIGRDGDKNE---IIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV----SDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~~~~ 236 (991)
.+++|++..++. +...+..... ..+.+.|+|++|+|||++|+.+++... ... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~l~--~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQALG--PDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHHHC--SSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHHhc--ccC-Ccccccchhhhhcccchh
Confidence 469999988766 4555544321 235789999999999999999997422 111 1122221 1222333
Q ss_pred HHHHHHHHHccCC---------------------C--------C-cccCHHHHHHHHHhHh-----CCc----eeEEEec
Q 001955 237 TIVEKMIRSATNR---------------------E--------S-EKLDLDQLQERLRGEI-----DGK----RYLLVLD 277 (991)
Q Consensus 237 ~~~~~i~~~l~~~---------------------~--------~-~~~~~~~l~~~l~~~L-----~~k----r~LlVlD 277 (991)
..+.+......+. . . .......+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3333333321100 0 0 0000122222222221 133 3599999
Q ss_pred cccccChHHHHHHHHHhcCCCCCcEEEEecC-----------c------HHHHHHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 278 DVWNENRDKWLELEALLMNGVSGSKIVVTTR-----------S------ERVARITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 278 dv~~~~~~~~~~l~~~l~~~~~gs~iivTTR-----------~------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
++..........+...+...... .++++|. + +.+...+ ..+.+++++.++..+++...+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHH
Confidence 99887766677777766554433 3444443 1 2222222 347899999999999999876
Q ss_pred ccCCCCCCChhHHHHHHHHHhhcC-CchHHHHHH
Q 001955 341 FEQGSEPKDSKLVQIGKDVVGKCA-GVPLAIRTI 373 (991)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~I~~~c~-GlPLal~~~ 373 (991)
...+... -.+....|++.+. |.|-.+..+
T Consensus 273 ~~~~~~~----~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 273 EEEDVEM----SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHTTCCB----CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCCCC----CHHHHHHHHHHhcCCCHHHHHHH
Confidence 5433211 1245677888887 777554443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.5e-06 Score=94.08 Aligned_cols=196 Identities=13% Similarity=0.172 Sum_probs=110.2
Q ss_pred CceeecchhHHHHHHHHhCCCC-----------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE-----------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI 232 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 232 (991)
.+++|++..++++..++..... ...+..+.+.|+|++|+||||+|+.+++.. .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 4599999999999999975110 000134689999999999999999999742 11 2334444444
Q ss_pred CChHHHHHHHHHHccCCCCcccCHHHHHHHH--HhHhCCceeEEEeccccccCh---HHHHHHHHHhcCCCCCcEEEEec
Q 001955 233 FDVTTIVEKMIRSATNRESEKLDLDQLQERL--RGEIDGKRYLLVLDDVWNENR---DKWLELEALLMNGVSGSKIVVTT 307 (991)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l--~~~L~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTT 307 (991)
.... +....+....... ......... .....+++.+||+|+++.... ..+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 3332 2222222221110 000000000 001235788999999976422 2234555544432 33455555
Q ss_pred CcHH---HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC-chHHHHHHHH
Q 001955 308 RSER---VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG-VPLAIRTIGR 375 (991)
Q Consensus 308 R~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLal~~~~~ 375 (991)
.+.. +.........+.+++++.++..+.+...+...+..... +....|++.++| ++-++..+..
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 21111223368899999999999988876544332222 345788899999 5555655543
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=1.7e-05 Score=85.41 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred ceeecchhHHHHHHHHhCCC---------CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCCh
Q 001955 165 DIIGRDGDKNEIIDRLLDSS---------ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDV 235 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 235 (991)
.++|.+..++.+.+.+.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776554210 000123457899999999999999988874221111111123333210
Q ss_pred HHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc---------ChHHHHHHHHHhcCCCCCcEEEEe
Q 001955 236 TTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE---------NRDKWLELEALLMNGVSGSKIVVT 306 (991)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 306 (991)
.+.... .......+...+... +.-+|+||+++.. .......+...+.....+..||+|
T Consensus 109 ---------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 010000 011112222223222 3459999999733 445556676667666667788888
Q ss_pred cCcHHHHHHh--C------CCCceecCCCChHHHHHHHHHHHcc
Q 001955 307 TRSERVARIT--S------KLPFHALRGLPEDMSWSLFTRMAFE 342 (991)
Q Consensus 307 TR~~~v~~~~--~------~~~~~~l~~L~~~~~~~Lf~~~a~~ 342 (991)
|......... . ....+.+++++.++-.+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8654321111 1 1246889999999999999887654
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=4e-07 Score=100.47 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCCcccc-----Cccc-cCCCCccEEEccCCCCcc-----c
Q 001955 545 KNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETV-----PSLI-GKLKHLRYFNLSHNADIK-----S 613 (991)
Q Consensus 545 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~l-----p~~~-~~l~~L~~L~L~~~~~~~-----~ 613 (991)
++|+.|.+.++...... ...+...+++|+.|+|++|.++.. ...+ ...++|++|+|++|. ++ .
T Consensus 101 ~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH
T ss_pred CCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH
Confidence 67888888777654322 333444556788888888887632 1222 246778888888887 43 3
Q ss_pred cchhhhcccCCCEEeCCCCCCCc----cccccccccccCcEEeeccccccC----cCCcCCCCCCCCCcCCccccCCc
Q 001955 614 LPDSVSRLLNLQTLDLSCCDDLV----ELPRDIGKMVSLRHLAIESCLSLT----DMPNGLGQLTNLRTLPLFMVGRK 683 (991)
Q Consensus 614 lP~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~l~~L~~L~~L~l~~~~~~ 683 (991)
++..+..+++|++|+|++|.... .++..+...++|++|++++|.... .++..+...++|++|++..|...
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55556778888888888865322 235556677788888888874321 12333445677888887666543
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.11 E-value=9e-05 Score=77.89 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=91.8
Q ss_pred CceeecchhHHHHHH-------HHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIID-------RLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
..++|....++++.. .+.... ....+.+.|+|++|+|||++|+.+++. .... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH----
Confidence 347788777666665 332111 225678999999999999999999973 2111 122222221
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc---------ChHHH-HHHHHHhcC---CCCCcEE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE---------NRDKW-LELEALLMN---GVSGSKI 303 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~-~~l~~~l~~---~~~gs~i 303 (991)
+.+. ........+...+......+..+|+|||++.. ....+ ..+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1100 00011122333333344467889999998642 01222 223333332 2233457
Q ss_pred EEecCcHHHHHHhC---C-CCceecCCCCh-HHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC
Q 001955 304 VVTTRSERVARITS---K-LPFHALRGLPE-DMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG 365 (991)
Q Consensus 304 ivTTR~~~v~~~~~---~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G 365 (991)
|.||.......... . ...+.+++++. ++..+++.+.. . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 77887765544321 1 23578888988 66666655421 1 11 2345778888877
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.11 E-value=2.1e-05 Score=88.37 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=101.4
Q ss_pred CceeecchhH---HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDK---NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. .... ++.++.......-++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHH
Confidence 3588888777 6676766643 3467899999999999999999973 2222 233322211111111
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEE-ecCcHH--H-HHHh
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVV-TTRSER--V-ARIT 316 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TTR~~~--v-~~~~ 316 (991)
.++... ......+++.+|+||+++.-.....+.+...+..+ ...+|. ||.+.. + ....
T Consensus 93 ~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 111110 01112467889999999876555555566666542 233443 555432 1 1122
Q ss_pred CCCCceecCCCChHHHHHHHHHHHccCCCC---CCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 317 SKLPFHALRGLPEDMSWSLFTRMAFEQGSE---PKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
....++.+++++.++..+++.+.+...... ....--.+..+.|++.++|.+-.+.-+-
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 233478899999999999998876542110 0011123556778888999886555443
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.07 E-value=8e-05 Score=80.74 Aligned_cols=184 Identities=14% Similarity=0.078 Sum_probs=104.8
Q ss_pred chhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc---
Q 001955 170 DGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA--- 246 (991)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l--- 246 (991)
+...+.+...+..+. -...+.++|++|+|||++|+.+++...-...-+ ......-..-+.+...-
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCCC
Confidence 345566666665432 345789999999999999998886311100000 00000000011111000
Q ss_pred ----cCCC-CcccCHHHHHHHHHhH----hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHH-H
Q 001955 247 ----TNRE-SEKLDLDQLQERLRGE----IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VAR-I 315 (991)
Q Consensus 247 ----~~~~-~~~~~~~~l~~~l~~~----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~-~ 315 (991)
.... ......+++.+.+... ..+++-++|+|+++.-.......+...+.....++.+|++|.+.+ +.. .
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 0000 0112233333222221 125678899999988776677778888877666778777776643 211 1
Q ss_pred hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHHH
Q 001955 316 TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTIG 374 (991)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~~ 374 (991)
.+....+.+.+++.++..+.+.+.. . . . .+.+..+++.++|.|..+..+.
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~----~-~-~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV----T-M-S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC----C-C-C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc----C-C-C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 2233478899999999999888764 1 1 1 2345779999999997665443
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=3.5e-05 Score=80.55 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=98.6
Q ss_pred CceeecchhHHHHHHHHh---CCCCC---CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLL---DSSES---EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+++. ....- .....+-+.|+|++|+|||++|+.+++. .... .+.+..+...+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 358899888777766543 21100 0023456789999999999999999973 2222 234444332110
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC------------h---HHHHHHHHHhcC--CCCC
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN------------R---DKWLELEALLMN--GVSG 300 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 300 (991)
. .......+...+.......+.+|+||+++... . .....+...+.. ...+
T Consensus 79 --------~-----~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 --------I-----GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp --------S-----TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred --------c-----cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 00111222223333333467899999997531 0 111223333332 1235
Q ss_pred cEEEEecCcHHHHH-H-h---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHH
Q 001955 301 SKIVVTTRSERVAR-I-T---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTI 373 (991)
Q Consensus 301 s~iivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~ 373 (991)
..||.||....... . . .....+.++..+.++-.+++...+....... ........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ---SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB---THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHCCCCCHHHHHHH
Confidence 56777776543211 1 1 1224667889999999999988765433211 112234778888888754 44433
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.06 E-value=7.4e-06 Score=76.83 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=70.5
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 478999999999988754222 1224789999999999999999974211 1112 22 555443222
Q ss_pred HccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc
Q 001955 245 SATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 245 ~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 309 (991)
..... .+... +.-.|+||+++.........+...+.......++|.||..
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01111 11111 3357899999887766666777777555556678887764
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=2.5e-05 Score=84.68 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=103.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. .. ..++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHHHH
Confidence 458999999999999998532 3357888899999999999999873 21 12334443331 11 1111111
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-hHHHHHHHHHhcCCCCCcEEEEecCcHH-----HHHHhC
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-RDKWLELEALLMNGVSGSKIVVTTRSER-----VARITS 317 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTTR~~~-----v~~~~~ 317 (991)
...... ....+++-++++||++.-. ......+...+.....+.++|+||.... +...+
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~- 157 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC- 157 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-
Confidence 111000 0012477899999998765 5555666666554445678888887543 22222
Q ss_pred CCCceecCCCChHHHHHH-------HHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHH
Q 001955 318 KLPFHALRGLPEDMSWSL-------FTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIR 371 (991)
Q Consensus 318 ~~~~~~l~~L~~~~~~~L-------f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~ 371 (991)
..+.+++++.++-.++ +...+...+..... .+....|++.++|.+-.+.
T Consensus 158 --~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 --RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp --EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred --cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 3688999998874333 22222222211111 2456778888888775433
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=6.5e-05 Score=81.30 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=87.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
...+.|+|++|+||||||+.+++..... . ..++++++. .+...+...+.. ...+... ..+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~-----~~~~~~~----~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKK-----GTINEFR----NMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHH-----TCHHHHH----HHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHc-----CcHHHHH----HHh-cC
Confidence 4568999999999999999999742111 1 123455432 233333333321 1112222 222 23
Q ss_pred eeEEEeccccccCh--HHHHHHHHHhcC-CCCCcEEEEecCcH---------HHHHHhCCCCceecCCCChHHHHHHHHH
Q 001955 271 RYLLVLDDVWNENR--DKWLELEALLMN-GVSGSKIVVTTRSE---------RVARITSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 271 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
.-+|+|||+..... .....+...+.. ...|..||+||... .+...+.....+.+++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999976432 222333333321 12455788877532 2333333334688999 99999999988
Q ss_pred HHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 339 MAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
.+...+... . .++...|++.+ |..-
T Consensus 178 ~~~~~~~~l-~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLEL-R---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCC-C---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCC-C---HHHHHHHHHhC-CCHH
Confidence 875433211 1 24557788888 7654
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=8.6e-06 Score=80.17 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=37.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++||+.+++.+.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998753 3345689999999999999999873
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=7.6e-07 Score=97.28 Aligned_cols=146 Identities=23% Similarity=0.255 Sum_probs=75.1
Q ss_pred cCcccccccccCceeeccccccccCCCCCCCCccceeeccccccceeccCCCCCCC--CCCCCccEEeeccccccccccc
Q 001955 764 LSSWLSSVTNLTMIDISICIKCQYIPELDQLPSLKRLRLFKLSALEYISSSSPPST--TIFPSLEELRIFACPELKGWWR 841 (991)
Q Consensus 764 lp~~l~~l~~L~~L~L~~~~~~~~lp~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~--~~~~~L~~L~l~~~~~L~~~~~ 841 (991)
++.++..+|+|+.|.|++|... .++.+. +++|+.|++..|. +.......+ ..+|+|+.|+|+.+.+...-
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~----l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~-- 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGG----LPDSVVEDILGSDLPNLEKLVLYVGVEDYGF-- 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSB----CCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCC----CChHHHHHHHHccCCCCcEEEEecccccccc--
Confidence 3344556667777777666322 233332 6677777776422 111111111 15777777777532111000
Q ss_pred cCCCccccCCCCCCCCccceeecccCCCCCCCCccCeeeeccCCCCCCCCCc--cCCCCCCccEEEEecCCCCCc-----
Q 001955 842 TDGSTTQTAEPPFSHPLQQTMMRTTNTAEPPFSKLKSLTIESIDDLETWPEE--MMPNFPSIQNISIELCPKLIS----- 914 (991)
Q Consensus 842 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~l~~L~~L~l~~c~~l~~----- 914 (991)
... + ..+ .. ......+|+|+.|++.+|......... ..+.+|+|++|+|+.| .++.
T Consensus 236 -~~~--~----------~~l--~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~ 298 (362)
T 2ra8_A 236 -DGD--M----------NVF--RP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARL 298 (362)
T ss_dssp -CSC--G----------GGT--GG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHH
T ss_pred -chh--H----------HHH--HH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHH
Confidence 000 0 000 00 001135788888888877422111100 0135788999999877 4554
Q ss_pred ccccCCCCCCCCeEeeecCC
Q 001955 915 LPQRLNKATTLKTVGIYDCP 934 (991)
Q Consensus 915 lp~~l~~l~~L~~L~l~~c~ 934 (991)
++.++.++++|+.|++++|.
T Consensus 299 L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBB
T ss_pred HHhhcccCCcceEEECCCCc
Confidence 45555678899999998886
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.98 E-value=8.1e-05 Score=80.30 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=103.0
Q ss_pred CceeecchhHHHHHHHHhCC-------CCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS-------SESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++.+.+.+... ... ....+-|.++|++|+|||++|+.+++. ....| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 45899999999998877210 000 123457899999999999999999973 22222 223221
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHH-HhHhCCceeEEEeccccccCh-----------HHHHHHHHHhc---CCCCCc
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERL-RGEIDGKRYLLVLDDVWNENR-----------DKWLELEALLM---NGVSGS 301 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~L~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 301 (991)
.+ ..... ...+.....+ ...-..++.+|+||+++.... .....+...+. ....+.
T Consensus 86 ~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11110 0112222222 222235678999999974311 11233444333 233455
Q ss_pred EEEEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc-hHHHHHHH
Q 001955 302 KIVVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV-PLAIRTIG 374 (991)
Q Consensus 302 ~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLal~~~~ 374 (991)
.||.||.... +.. .....+.++..+.++-.++|..++........ ......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776532 222 23345678888999999999988754332111 13457788888874 44454443
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.97 E-value=7.6e-05 Score=81.54 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=100.6
Q ss_pred CceeecchhHHHHHHHHhCC---C---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS---S---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+... . .......+-|.|+|++|+|||++|+.+++. ....| +.+..+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 45899999999998876311 0 000112345889999999999999999983 22221 222221 1
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChH-----------HHHHHHHHhcC---CCCCcEE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRD-----------KWLELEALLMN---GVSGSKI 303 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 303 (991)
+ ..... ......+...+...-..++.+|+||+++..... ....+...+.. ...+..|
T Consensus 120 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 11111 011122222222222357889999999753211 12233333321 2345566
Q ss_pred EEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc-hHHHHHHH
Q 001955 304 VVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV-PLAIRTIG 374 (991)
Q Consensus 304 ivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLal~~~~ 374 (991)
|.||.... +.. .....+.+...+.++-.+++..+......... ......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776442 222 33346678888999999999887754322111 23347788889884 44454443
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00035 Score=75.06 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=101.5
Q ss_pred CceeecchhHHHHHHHHhCC---C---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS---S---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+... . .......+-|.++|++|+|||++|+.+++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 45889998888888766310 0 00012346788999999999999999997320 111 12333332111
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-------h----HHHHHHHHHhcC---CCCCcEE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-------R----DKWLELEALLMN---GVSGSKI 303 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~gs~i 303 (991)
.. .......+...+...-..++.+|+||+++... . .....+...+.. ...+..|
T Consensus 85 -----------~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------KW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------SS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------hh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00 01111222222222223567899999996530 0 111223333332 2244556
Q ss_pred EEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc-hHHHHHHHH
Q 001955 304 VVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV-PLAIRTIGR 375 (991)
Q Consensus 304 ivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLal~~~~~ 375 (991)
|.||.... +.. .....+.++..+.++-.+++..+......... ......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665432 222 23346778888889999999887643322111 23457889999887 444555543
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.4e-06 Score=80.52 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=64.5
Q ss_pred CccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc-ccCCCC----CCCCeEeeecCCCCCc-----CCCCC
Q 001955 874 SKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP-QRLNKA----TTLKTVGIYDCPNMAI-----LPEGL 943 (991)
Q Consensus 874 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l----~~L~~L~l~~c~~l~~-----lp~~~ 943 (991)
.+|+.|++++|. ++......+..+++|++|+|++|..++.-. ..+..+ ++|++|+|++|++++. +....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 469999999995 666544456789999999999998887521 123332 4799999999998764 44333
Q ss_pred CcCeEEEecCcchhhh
Q 001955 944 QLQSLEIIQCPQLSER 959 (991)
Q Consensus 944 ~L~~L~i~~c~~L~~~ 959 (991)
.|+.|++++||.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 3999999999998864
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=0.00011 Score=80.15 Aligned_cols=175 Identities=11% Similarity=0.136 Sum_probs=104.2
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccccccc-ceEEEEecCCCChHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN-LRMWVCVSDIFDVTTIVEKM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 242 (991)
.+++|.+..++.+...+..+ ....+.++|++|+||||+|+.+++... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 34788888888888888753 222388999999999999999987311 11111 112222222111
Q ss_pred HHHccCCCCcccCHHHHHHHHHhH------hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH-HHH-
Q 001955 243 IRSATNRESEKLDLDQLQERLRGE------IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER-VAR- 314 (991)
Q Consensus 243 ~~~l~~~~~~~~~~~~l~~~l~~~------L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~-v~~- 314 (991)
.+.+.+.+... +.+.+-++|+|+++.-.......+...+......+++|++|.... +..
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222111 123467899999977665666667776665556677777775432 111
Q ss_pred HhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHH
Q 001955 315 ITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAI 370 (991)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal 370 (991)
.......+.+.+++.++..+.+.+.+-..+... -.+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i----~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL----SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB----CHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 112223678999999998888877663222111 1245677888888887644
No 191
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=1.9e-05 Score=77.20 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN 248 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 248 (991)
....++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 34455555555544322 234689999999999999999999742212222 233443 33444444433321
Q ss_pred CCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHH--HHHHHhcCC-CCCcEEEEecCc
Q 001955 249 RESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWL--ELEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 249 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTTR~ 309 (991)
.... .....+. +.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1111 2222222 4678999999743223343 233333222 256788888874
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=0.00013 Score=79.78 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=102.0
Q ss_pred CceeecchhHHHHHHHHhCC----CC--CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS----SE--SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+... .. ......+.|.|+|++|+|||++|+.+++. .... .+.++++.....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 45899999999998877420 00 00123457899999999999999999873 2211 234444322110
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHHhcCC----CCCcE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEALLMNG----VSGSK 302 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~ 302 (991)
.. ......+...+...-..++.+|+||+++.. .......+...+... ..+..
T Consensus 157 ------------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 ------------WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ------------ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ------------cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 00 001111111222222356789999999532 011223344334321 23445
Q ss_pred EEEecCcHHH---HHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC-chHHHHHHHH
Q 001955 303 IVVTTRSERV---ARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG-VPLAIRTIGR 375 (991)
Q Consensus 303 iivTTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLal~~~~~ 375 (991)
||.||..... +-.-.....+.+...+.++..+++...+........ ......|++.+.| .+-.+..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666754321 111122236678888899988888877643322111 2445778888888 5555655544
No 193
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.89 E-value=0.00023 Score=79.29 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=60.8
Q ss_pred hhhhccCCcccEEEccCCCccccC-ccccCCCCccEEEccCCCCccccch-hhhcccCCCEEeCCCCCCCcccc-ccccc
Q 001955 568 NKIVSSFKCLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNADIKSLPD-SVSRLLNLQTLDLSCCDDLVELP-RDIGK 644 (991)
Q Consensus 568 ~~~~~~~~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~ 644 (991)
...|.+|++|+.+.|.. .++.++ ..|.+|.+|+.++|..+ +..++. .+.++.+|+.+.+..+ +..++ ..+.+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecceeeec
Confidence 34678888999999874 477774 46888899999988765 455544 5677788887776642 33333 23444
Q ss_pred cccCcEEeeccccccCcC-CcCCCCCCCCCcCCc
Q 001955 645 MVSLRHLAIESCLSLTDM-PNGLGQLTNLRTLPL 677 (991)
Q Consensus 645 L~~L~~L~l~~~~~~~~l-p~~l~~L~~L~~L~l 677 (991)
+..+........ ..+ ...+.++++|+.+.+
T Consensus 139 ~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l 169 (394)
T 4fs7_A 139 CDFKEITIPEGV---TVIGDEAFATCESLEYVSL 169 (394)
T ss_dssp CCCSEEECCTTC---CEECTTTTTTCTTCCEEEC
T ss_pred ccccccccCccc---cccchhhhcccCCCcEEec
Confidence 433333322221 112 133566667776655
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=5.8e-06 Score=78.90 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred CccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCCCCC
Q 001955 900 SIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCPNMA 937 (991)
Q Consensus 900 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~ 937 (991)
+|++|+|++|++++.-- ..+.++++|+.|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 56666666666555311 123455666666666666554
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.00025 Score=78.97 Aligned_cols=105 Identities=8% Similarity=0.117 Sum_probs=62.9
Q ss_pred hhhcCC-CCcEEEecccCCCcccchhhHhhhhhccCCcccEEEccCCC---ccccC-ccccCCCCccEEEccCCCCcccc
Q 001955 540 ALLRAK-NLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSE---IETVP-SLIGKLKHLRYFNLSHNADIKSL 614 (991)
Q Consensus 540 ~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---i~~lp-~~~~~l~~L~~L~L~~~~~~~~l 614 (991)
.|..++ .|++..+...- . . + -...|.+|++|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ +..+
T Consensus 58 aF~~~~~~L~sI~iP~sv-t-~-I----g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTV-T-E-I----GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTTC-C-E-E----CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEE
T ss_pred hccCCCCcCEEEEECCCe-e-E-E----hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--ccee
Confidence 455553 47777664321 1 1 0 23457788888888887643 55553 35777777877776554 3444
Q ss_pred ch-hhhcccCCCEEeCCCCCCCcccc-ccccccccCcEEeecc
Q 001955 615 PD-SVSRLLNLQTLDLSCCDDLVELP-RDIGKMVSLRHLAIES 655 (991)
Q Consensus 615 P~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 655 (991)
+. .+..+.+|+.+.+... +..++ ..+..+.+|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 43 4567778888887642 33333 3456677777777654
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.81 E-value=0.00018 Score=76.76 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=100.0
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++.+.+++...-.. .....+.|.|+|++|+|||++|+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 35899998888888776521000 0113457899999999999999999973 2222 22222 22
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC--------------hHHHHHHHHHhcC--CCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN--------------RDKWLELEALLMN--GVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~g 300 (991)
.+..... +.. ...+...+.......+.+|+||+++... ......+...+.. ...+
T Consensus 84 ~l~~~~~----g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF----GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH----TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc----Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 3322221 111 1122223333333567899999996421 0112344444432 2245
Q ss_pred cEEEEecCcHHHHH-H-hC---CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHH
Q 001955 301 SKIVVTTRSERVAR-I-TS---KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLA 369 (991)
Q Consensus 301 s~iivTTR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 369 (991)
..||.||....... . .. ....+.++..+.++-.+++.......... ...++ ..+++.+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchH----HHHHHHcCCCCHH
Confidence 67777777553221 1 11 22367788899999888888776433221 11222 4566677777643
No 197
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.79 E-value=2.7e-06 Score=93.72 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=88.5
Q ss_pred CCCCcEEEecccCCCcccchhhHhhhhhc-cCCcccEEEccCCCccc--cCccccCCCCccEEEccCCCCccccchhh--
Q 001955 544 AKNLRTFLSTVYSSSDRQLNESYCNKIVS-SFKCLRTLNLSNSEIET--VPSLIGKLKHLRYFNLSHNADIKSLPDSV-- 618 (991)
Q Consensus 544 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~~lP~~i-- 618 (991)
+++|+.|.+.++....... ..+...+. +.++|+.|+|++|.+.. +......+.+|++|+|++|.+...-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3567888887776543221 11223333 34799999999999863 22233456789999999998433222333
Q ss_pred ---hcccCCCEEeCCCCCCCc----cccccccccccCcEEeeccccccC----cCCcCCCCCCCCCcCCccccC
Q 001955 619 ---SRLLNLQTLDLSCCDDLV----ELPRDIGKMVSLRHLAIESCLSLT----DMPNGLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 619 ---~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~~~~----~lp~~l~~L~~L~~L~l~~~~ 681 (991)
...++|++|+|++|.... .++..+..+++|++|++++|.... .++..+...++|++|++..|.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 246789999999975322 355666788999999999984321 134456667788888886654
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.78 E-value=0.0017 Score=70.24 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=94.1
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
..++|.+..++.+...+...... ......+.++|++|+||||||+.+++. ....|. ... .....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc---------
Confidence 34788887777776666432000 113357899999999999999999973 211111 111 11100
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC------------------CCcEEE-
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV------------------SGSKIV- 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii- 304 (991)
...++...+ ..+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 89 -----------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 011111111 112 234577888886554333333433332211 011222
Q ss_pred EecCcHHHHHHh-C-CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 305 VTTRSERVARIT-S-KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 305 vTTR~~~v~~~~-~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
.|++...+.... + ..-...+++.+.++-.+++.+.+...+.. .-.+.+..|+++++|.|-.+.-+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 344432221111 1 11247799999999999998876433221 12356789999999999655433
No 199
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.78 E-value=0.00045 Score=73.56 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=99.0
Q ss_pred CceeecchhHHHHHHHHhCCCC------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+..... ......+.+.|+|++|+||||+|+.+++. .... .+.+..+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4589999999999887742100 00112457899999999999999999973 2211 22333332111
Q ss_pred HHHHHHHHccCCCCcccCHHHHHH-HHHhHhCCceeEEEeccccccC-----------hHHHHHHHHHhcC---C--CCC
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQE-RLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEALLMN---G--VSG 300 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~-~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~---~--~~g 300 (991)
.. ......... .+......++.+|+||++.... ......+...+.. . +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 001122222 2222223567899999996431 1111122222221 1 134
Q ss_pred cEEEEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHHH
Q 001955 301 SKIVVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTIG 374 (991)
Q Consensus 301 s~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~~ 374 (991)
..||.||.... +... ....+.+...+.++...++...+........ ......|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55677776532 2332 2235667777888888888776643322111 2345778888988875 454443
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.76 E-value=1.9e-05 Score=73.80 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=63.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
..++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++. +....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~------~~~~~- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE------YLIDM- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT------HHHHC-
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh------CChHh-
Confidence 3588999998888887753221 122378999999999999999997422 112222211 10000
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC-CCCcEEEEecCc
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTTR~ 309 (991)
.. .+.+. .+.-.++||++..........+...+... ..+.++|.||..
T Consensus 67 ---------------~~-~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PM-ELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HH-HHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hh-hHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 01 11111 12457899999877655555566555543 345678888764
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00023 Score=75.50 Aligned_cols=149 Identities=9% Similarity=-0.073 Sum_probs=92.6
Q ss_pred ecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc-ccccccceEEEEecC-CCChHHHHHHHHHH
Q 001955 168 GRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED-VKTHFNLRMWVCVSD-IFDVTTIVEKMIRS 245 (991)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~ 245 (991)
|-+..++.+...+... ......++|++|+||||+|+.+.+.-. ....+....++..+. ...+.. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455666777777643 356889999999999999999986210 111122233443322 122221 2223332
Q ss_pred ccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH-HHHHHhCCCCceec
Q 001955 246 ATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE-RVARITSKLPFHAL 324 (991)
Q Consensus 246 l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~-~v~~~~~~~~~~~l 324 (991)
+.... ..+++-++|+|+++.-.......+...+....+.+.+|++|.++ .+....... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 22110 12456789999998877777888888888776778887777543 333333333 8999
Q ss_pred CCCChHHHHHHHHHHH
Q 001955 325 RGLPEDMSWSLFTRMA 340 (991)
Q Consensus 325 ~~L~~~~~~~Lf~~~a 340 (991)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988776
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=1.9e-05 Score=79.01 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=61.2
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCC
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRES 251 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 251 (991)
.++.+..++..... ....+.+.|+|++|+||||||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555566554321 111267899999999999999999974 32333445666543 344444333221
Q ss_pred cccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHH--HHH-HhcCC-CCCcEEEEecCc
Q 001955 252 EKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLE--LEA-LLMNG-VSGSKIVVTTRS 309 (991)
Q Consensus 252 ~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTTR~ 309 (991)
.........+. +.-+|||||++......|.+ +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11233333332 22499999996643333221 211 22111 235578888874
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=2.6e-05 Score=76.52 Aligned_cols=113 Identities=10% Similarity=0.104 Sum_probs=51.6
Q ss_pred hhcCCCCcEEEeccc-CCCcccchhhHhhhhhccCCcccEEEccCCCccc-----cCccccCCCCccEEEccCCCCccc-
Q 001955 541 LLRAKNLRTFLSTVY-SSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIET-----VPSLIGKLKHLRYFNLSHNADIKS- 613 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~~~~- 613 (991)
+...++|++|.+.++ ...... ...+...+...+.|++|+|++|.+.. +...+...++|++|+|++|. ++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 344555555555554 332211 01123334445556666666655542 23334444555666666555 322
Q ss_pred ----cchhhhcccCCCEEeC--CCCCCCcc----ccccccccccCcEEeeccc
Q 001955 614 ----LPDSVSRLLNLQTLDL--SCCDDLVE----LPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 614 ----lP~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~L~~L~~L~l~~~ 656 (991)
+...+...+.|++|+| ++|..... +...+...++|++|++++|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3344445555556655 44332111 2233334455555555554
No 204
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=1.2e-05 Score=87.84 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=82.3
Q ss_pred hhcCCCCcEEEecccCCCc---ccchhhHhhhhhccCCcccEEEccCCCccccCccccCCCCccEEEccCCCCccccchh
Q 001955 541 LLRAKNLRTFLSTVYSSSD---RQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDS 617 (991)
Q Consensus 541 ~~~~~~Lr~L~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~lP~~ 617 (991)
..++++|++|.+....... .+.....+..++..+++|+.|+|++|.-..++. +. +++|+.|+|..|.+.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 4567788888775432110 001011134667888999999999874234544 43 889999999888733333334
Q ss_pred hh--cccCCCEEeCCCCCC-------Cccccccc--cccccCcEEeeccccccCcCCcCC---CCCCCCCcCCcccc
Q 001955 618 VS--RLLNLQTLDLSCCDD-------LVELPRDI--GKMVSLRHLAIESCLSLTDMPNGL---GQLTNLRTLPLFMV 680 (991)
Q Consensus 618 i~--~L~~L~~L~L~~~~~-------~~~lp~~i--~~L~~L~~L~l~~~~~~~~lp~~l---~~L~~L~~L~l~~~ 680 (991)
++ ++++|+.|+|+.+.. +..+...+ ..+++|++|++.+|......+..+ ..+++|++|+++.+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 44 789999999863211 11222222 357899999998874432222111 24677888877443
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.6e-05 Score=77.97 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=83.7
Q ss_pred hhhhhccCCcccEEEccCC-Ccc-----ccCccccCCCCccEEEccCCCCcc-----ccchhhhcccCCCEEeCCCCCCC
Q 001955 567 CNKIVSSFKCLRTLNLSNS-EIE-----TVPSLIGKLKHLRYFNLSHNADIK-----SLPDSVSRLLNLQTLDLSCCDDL 635 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~-----~lP~~i~~L~~L~~L~L~~~~~~ 635 (991)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|. ++ .+...+...++|++|+|++|...
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 4567788999999999999 886 245667788999999999998 44 34556777789999999997643
Q ss_pred cc----ccccccccccCcEEee--ccccccCc----CCcCCCCCCCCCcCCccccC
Q 001955 636 VE----LPRDIGKMVSLRHLAI--ESCLSLTD----MPNGLGQLTNLRTLPLFMVG 681 (991)
Q Consensus 636 ~~----lp~~i~~L~~L~~L~l--~~~~~~~~----lp~~l~~L~~L~~L~l~~~~ 681 (991)
.. +...+...++|++|++ ++|..... +...+...++|++|++..+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 32 5667778889999999 66732211 22334455778888775543
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.0015 Score=72.31 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCcccc-cCCCCCCCCeEeee
Q 001955 870 EPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLPQ-RLNKATTLKTVGIY 931 (991)
Q Consensus 870 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 931 (991)
+..+++|+.+.+.++ .++.++...|.++++|+.+.|.. .++.++. .+.++++|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 345677777777654 56777777778888888888854 3666653 46677777777764
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=4.5e-05 Score=78.72 Aligned_cols=79 Identities=25% Similarity=0.270 Sum_probs=50.7
Q ss_pred ccCCcccEEEccCCCcccc---CccccCCCCccEEEccCCCCccccchhhhccc--CCCEEeCCCCCCCcccc-------
Q 001955 572 SSFKCLRTLNLSNSEIETV---PSLIGKLKHLRYFNLSHNADIKSLPDSVSRLL--NLQTLDLSCCDDLVELP------- 639 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~~lP~~i~~L~--~L~~L~L~~~~~~~~lp------- 639 (991)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|. +..+. .+..+. +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5677788888888777654 3455677778888887777 54442 244444 77777777765444444
Q ss_pred ccccccccCcEEe
Q 001955 640 RDIGKMVSLRHLA 652 (991)
Q Consensus 640 ~~i~~L~~L~~L~ 652 (991)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245666777665
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.65 E-value=0.00073 Score=74.94 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=98.2
Q ss_pred CceeecchhHHHHHHHHhCCCC------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+..++..... ......+-|.|+|++|+|||++|+.+++. .... .+.++++.... .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c
Confidence 4689999999999888732100 00112357899999999999999999873 2211 22333322111 0
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHHhcC----CCCCcE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEALLMN----GVSGSK 302 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~----~~~gs~ 302 (991)
. .+ .....+...+...-...+.+|+||+++.. .......+...+.. ......
T Consensus 188 ----~---~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 ----Y---VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred ----c---cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 00 01111222222222245679999999643 11111222222221 123345
Q ss_pred EEEecCcHHHH-H-Hh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH-HHHHHH
Q 001955 303 IVVTTRSERVA-R-IT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL-AIRTIG 374 (991)
Q Consensus 303 iivTTR~~~v~-~-~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-al~~~~ 374 (991)
||.||...... . .. .....+.+...+.++..+++...+...+... ..+....|++.+.|..- ++..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666543211 1 11 2223577888999999999988775433211 12345788888888554 554443
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.64 E-value=0.00017 Score=81.76 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=101.7
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++++.+++...... .....+-|.|+|++|+|||++|+.+++. ....| +.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchH-----
Confidence 35899999999998877532000 0013346889999999999999999873 22222 2333211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------ChHHHHHHHHHhcC--CCCCcEE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NRDKWLELEALLMN--GVSGSKI 303 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~--~~~gs~i 303 (991)
+...+. ......+...+.....+++.+|+||+++.- .......+...+.. ...+..|
T Consensus 274 -----l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111111 111122333344444567789999999421 01222334444432 2234566
Q ss_pred EEecCcHHH-HHHh----CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc-hHHHHHH
Q 001955 304 VVTTRSERV-ARIT----SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV-PLAIRTI 373 (991)
Q Consensus 304 ivTTR~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLal~~~ 373 (991)
|.||..... .... .....+.+...+.++-.+++..++...... ...++ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhH----HHHHHHccCCcHHHHHHH
Confidence 667765432 1111 223367889999999999998876433221 11222 5567777775 4444444
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.61 E-value=0.00026 Score=75.99 Aligned_cols=138 Identities=16% Similarity=0.246 Sum_probs=76.3
Q ss_pred ceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
.++|.+..++.+...+.... .........+.++|++|+||||+|+.+++. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 47888888888887776421 100123468999999999999999999973 21111234555555433322 1222
Q ss_pred HHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 242 MIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 242 i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
++.... ..........+...+.. ...-+++||++..........+...+..+. ..+.+|+||..
T Consensus 95 l~g~~~-~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 LIGAPP-GYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHCCCT-TSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hcCCCC-ccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 221100 00000101122222222 334699999998877666777777665432 23347777765
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00084 Score=72.83 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=98.6
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.-+-.. .....+-|.++|++|.|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 45788888888887765421000 0123466889999999999999999983 22222 3333332211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC--------h--H----HHHHHHHHhcC--CCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN--------R--D----KWLELEALLMN--GVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~--------~--~----~~~~l~~~l~~--~~~g 300 (991)
.. .......+...+...-...+.+|++|+++..- . . ...++...+.. ...+
T Consensus 221 ------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00 00111122222222223578999999986420 0 0 11223333332 2345
Q ss_pred cEEEEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..||.||...+ +......+..+.++..+.++-.++|..+.-..... .+-++ ..|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCH----HHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCH----HHHHHHCCCCC
Confidence 56777887543 22222445578888888888889998776443221 12233 56777887754
No 212
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.60 E-value=0.00051 Score=77.37 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=99.1
Q ss_pred CceeecchhHHHHHHHHhCC----C--CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS----S--ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+... . .......+-|.|+|++|+|||+||+.+++.. ...-++.++.. .
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHH----H
Confidence 45899999999988877310 0 0001234678999999999999999999732 11223333321 1
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-------hH----HHHHHHHHhcC---CCCCcEE
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-------RD----KWLELEALLMN---GVSGSKI 303 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~---~~~gs~i 303 (991)
+..... + . .......+.... -..++.+|+||+++... .. ....+...+.. ...+..|
T Consensus 204 l~~~~~---g-~--~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSKWL---G-E--SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhhhc---c-h--HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 111111 1 1 111222332222 23567899999996431 01 11122222221 1345667
Q ss_pred EEecCcHHHHH--Hh-CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCc-hHHHHHHH
Q 001955 304 VVTTRSERVAR--IT-SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGV-PLAIRTIG 374 (991)
Q Consensus 304 ivTTR~~~v~~--~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLal~~~~ 374 (991)
|.||....... .. .....+.+...+.++..++|..++........ ......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 77776542111 11 22336678888888888888887643321111 13346788889884 44444443
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.59 E-value=0.00013 Score=89.78 Aligned_cols=154 Identities=14% Similarity=0.209 Sum_probs=80.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcccc---ccc-c-ceEEEEecCCCChHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVK---THF-N-LRMWVCVSDIFDVTTI 238 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F-~-~~~wv~~s~~~~~~~~ 238 (991)
+.++||+.+++++...+.... ..-+.++|.+|+||||+|+.+++..... ... + .+++++++....
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999997532 2346899999999999999998732110 001 1 223333322110
Q ss_pred HHHHHHHccCCCCcccCHH-HHHHHHHhHhC-CceeEEEeccccccC--------hHHHHHHHHHhcCCCCCcEEEEecC
Q 001955 239 VEKMIRSATNRESEKLDLD-QLQERLRGEID-GKRYLLVLDDVWNEN--------RDKWLELEALLMNGVSGSKIVVTTR 308 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~-~l~~~l~~~L~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTTR 308 (991)
+... ..+.+ .+...+...-. +++.+|++|++.... .+....+...+.. .+..+|.||.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000 01112 22222222222 367899999996532 1111123333332 2345666655
Q ss_pred cHHHHHH------hCCCCceecCCCChHHHHHHHHHH
Q 001955 309 SERVARI------TSKLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 309 ~~~v~~~------~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
....... ...-..+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 4432111 111125789999999999988654
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.56 E-value=0.00027 Score=73.83 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=68.7
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
.++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.... .. ...+.++++... ...+...+
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~-~~-~~~~~v~~~~~~--~~~~~~~l- 77 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR-WQ-GPFISLNCAALN--ENLLDSEL- 77 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT-TT-SCEEEEEGGGSC--HHHHHHHH-
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc-cC-CCeEEEecCCCC--hhHHHHHh-
Confidence 488999999888876654222 2235789999999999999999974211 11 123445554432 22222111
Q ss_pred HccCCCCcccCH-HHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC-----------CCCcEEEEecCc
Q 001955 245 SATNRESEKLDL-DQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG-----------VSGSKIVVTTRS 309 (991)
Q Consensus 245 ~l~~~~~~~~~~-~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTR~ 309 (991)
++......... ......+.. ...-+|+||++..........+...+..+ ....+||.||..
T Consensus 78 -~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 -FGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -cCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11100000000 000001111 23458999999887655555566655432 134678888775
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=1.9e-05 Score=81.44 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=72.5
Q ss_pred cCCcccE--EEccCCCccccCc----cccCCCCccEEEccCCCCcc--ccchhhhcccCCCEEeCCCCCCCccccccccc
Q 001955 573 SFKCLRT--LNLSNSEIETVPS----LIGKLKHLRYFNLSHNADIK--SLPDSVSRLLNLQTLDLSCCDDLVELPRDIGK 644 (991)
Q Consensus 573 ~~~~L~~--L~L~~~~i~~lp~----~~~~l~~L~~L~L~~~~~~~--~lP~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 644 (991)
..+.|.. ++++.|....++. ...++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|. +..+ ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhh
Confidence 3344444 5666665443332 22568999999999999443 556778899999999999965 5554 34555
Q ss_pred cc--cCcEEeeccccccCcCCc-------CCCCCCCCCcCCcc
Q 001955 645 MV--SLRHLAIESCLSLTDMPN-------GLGQLTNLRTLPLF 678 (991)
Q Consensus 645 L~--~L~~L~l~~~~~~~~lp~-------~l~~L~~L~~L~l~ 678 (991)
+. +|+.|++++|+....+|. .+..+++|+.|+..
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 55 999999999976655552 25677888888753
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.48 E-value=0.00016 Score=82.07 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=37.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+.++||+.+++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999997532 224579999999999999999873
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.011 Score=65.55 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=69.4
Q ss_pred hhhccCC-cccEEEccCCCccccC-ccccCCCCccEEEccCCC--Cccccch-hhhcccCCCEEeCCCCCCCcccc-ccc
Q 001955 569 KIVSSFK-CLRTLNLSNSEIETVP-SLIGKLKHLRYFNLSHNA--DIKSLPD-SVSRLLNLQTLDLSCCDDLVELP-RDI 642 (991)
Q Consensus 569 ~~~~~~~-~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~--~~~~lP~-~i~~L~~L~~L~L~~~~~~~~lp-~~i 642 (991)
..|.+++ .|+.+.+.. .++.+. ..|.++.+|+.+.+..+. .+..++. ++..+.+|+.+.+.. .+..++ ..+
T Consensus 57 ~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTT
T ss_pred hhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhh
Confidence 4566774 599999976 477664 578999999999997652 2445543 567788888887765 245554 346
Q ss_pred cccccCcEEeeccccccCcCC-cCCCCCCCCCcCCc
Q 001955 643 GKMVSLRHLAIESCLSLTDMP-NGLGQLTNLRTLPL 677 (991)
Q Consensus 643 ~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~L~l 677 (991)
..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+
T Consensus 134 ~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 134 HHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEC
T ss_pred hhhcccccccccce--eeeecccceecccccccccc
Confidence 78888999888643 33333 23556666666654
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00099 Score=73.42 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=92.1
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.-.-.. .....+-|.++|++|.|||++|+++++. ....| +.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc--
Confidence 45789998888887766421000 0124566899999999999999999983 22222 3343332211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------C---hHHHHHHHHHhcC--CCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------N---RDKWLELEALLMN--GVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~---~~~~~~l~~~l~~--~~~g 300 (991)
.. .......+...+...-...+.+|++|+++.. + .....++...+.. ...+
T Consensus 245 ------------~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00 0011112222222222356899999998531 0 0112223333322 2345
Q ss_pred cEEEEecCcHHH-----HHHhCCCCceecCCCCh-HHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERV-----ARITSKLPFHALRGLPE-DMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v-----~~~~~~~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..||.||...+. .........+.++.+++ ++-.++|..+.-.... ....++ ..|++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEADL----DSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCCH----HHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHHCCCCC
Confidence 567778875432 21112223566766655 4445566665543221 112233 56677777653
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.45 E-value=0.00027 Score=75.28 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=72.0
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
+.++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++... +.. ...+.++++... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~-~~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSD-RPLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSS-SCCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccC-CCeEEEeCCCCC--hHHHHH--
Confidence 3589999999998888765322 223577999999999999999987311 111 112344444322 222222
Q ss_pred HHccCCCCcccC-H-HHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 244 RSATNRESEKLD-L-DQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 244 ~~l~~~~~~~~~-~-~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
.+.+....... . ......+... ..-.|+||++..........+...+.... ...+||.||..
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred -HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22211110000 0 0000111111 23478999998876555566666665431 34678887765
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.0029 Score=65.57 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=92.7
Q ss_pred CceeecchhHHHHHHHHh---CCCCC---CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLL---DSSES---EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++++.+.+. ....- .....+-+.|+|++|+||||+|+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 458898877777665432 21000 0011234889999999999999999973 22122 3333222111
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh--------------HHHHHHHHHhcC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR--------------DKWLELEALLMN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 301 (991)
.. .......+...+.......+.++++|+++.... .....+...+.. ...+.
T Consensus 84 -------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 011122333333443345678999999943110 112223333322 22445
Q ss_pred EEEEecCcHHHH-HHh-C---CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCC-chHHHH
Q 001955 302 KIVVTTRSERVA-RIT-S---KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAG-VPLAIR 371 (991)
Q Consensus 302 ~iivTTR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLal~ 371 (991)
.||.||...+.. ... . ....+.++..+.++-.+++..+.-...-.. ... ...+++.+.| .+--+.
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~-~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc-ccc----HHHHHHHcCCCCHHHHH
Confidence 677777654321 111 1 123566777788888888877653321111 111 2456777777 554444
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=0.00015 Score=67.93 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=50.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
..++|+|+.|+|||||++.++...... .+ .++++........ . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 478999999999999999999743221 11 2566654432211 1 11345
Q ss_pred eEEEeccccccChHHHHHHHHHhcCC-CCCc-EEEEecCc
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNG-VSGS-KIVVTTRS 309 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTTR~ 309 (991)
-++||||+.......-..+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999764433323333332211 1233 48888874
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0023 Score=70.40 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=96.6
Q ss_pred CceeecchhHHHHHHHHhC----CC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLD----SS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.- .. .-.....+-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 3578888888888765431 00 000124567889999999999999999983 22222 2333322111
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hH---HHHHHHHHhcCC--CCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RD---KWLELEALLMNG--VSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~~--~~g 300 (991)
.. -......+...+...-...+.+|++|+++..- .. ....+...+... ..+
T Consensus 282 ------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 ------------KY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ------------CS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ------------cc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00 00111122222222233578999999986320 00 111222223222 234
Q ss_pred cEEEEecCcHHH-----HHHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERV-----ARITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..||.||..... .........+.++..+.++-.++|..+....... ..-++ ..|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCH----HHHHHHCCCCC
Confidence 456777765432 2222344577788888888889998776443221 11223 56777887753
No 223
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0017 Score=71.65 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=97.9
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.-+-.. .....+-|.++|++|.|||++|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 45788888888877766421000 0224577899999999999999999983 22222 2333332211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEecccccc-----------Ch---HHHHHHHHHhcC--CCCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-----------NR---DKWLELEALLMN--GVSG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~g 300 (991)
.. .......+...+...-...+.+|++|+++.. +. .....+...+.. ...+
T Consensus 254 ------------k~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------cc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 00 0011111222222222357899999999631 00 112233333332 2345
Q ss_pred cEEEEecCcHHHHHH--hC---CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERVARI--TS---KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..||.||...+.... .. ....+.++..+.++-.++|..+....... ...++ ..|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCH----HHHHHhCCCCC
Confidence 678888876543221 11 22356777778888888888776543221 12233 56778887754
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.34 E-value=0.0006 Score=73.08 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=83.6
Q ss_pred CceeecchhHHHHHHHHhCC---CCC-----CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC-
Q 001955 164 EDIIGRDGDKNEIIDRLLDS---SES-----EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD- 234 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~- 234 (991)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+++. ... ..+.+.++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 45899999999888777530 000 0012346789999999999999999873 211 233444433221
Q ss_pred ------hHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHH------------HHHHHHHhcC
Q 001955 235 ------VTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDK------------WLELEALLMN 296 (991)
Q Consensus 235 ------~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~------------~~~l~~~l~~ 296 (991)
....+.++.....+ .+.. .+.+.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11122222211100 0000 0246799999997653222 3445555543
Q ss_pred C----------CCCcEEEEec----Cc-----HHHHHHhCCCCceecCCCChHHHHHHHHH
Q 001955 297 G----------VSGSKIVVTT----RS-----ERVARITSKLPFHALRGLPEDMSWSLFTR 338 (991)
Q Consensus 297 ~----------~~gs~iivTT----R~-----~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (991)
. ..+..+|.|+ .. +.+...+ ...+.+++++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 1244566664 12 1222222 23588999999988888874
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.00048 Score=83.68 Aligned_cols=155 Identities=16% Similarity=0.238 Sum_probs=89.2
Q ss_pred CceeecchhHHHHHHHHhCCCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccc--
Confidence 4589999999888887763221 11223457999999999999999999973 2111123445555432211100
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCC-----------CCCcEEEEecCc
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNG-----------VSGSKIVVTTRS 309 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTR~ 309 (991)
. ...+...++. ...-+|+||++..........+...+..+ ....+||+||..
T Consensus 567 ------------~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 567 ------------S--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------C-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------c--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 1111122221 23458999999887777777777766542 135688888872
Q ss_pred -----HHH----HHHh-----C-CCCceecCCCChHHHHHHHHHH
Q 001955 310 -----ERV----ARIT-----S-KLPFHALRGLPEDMSWSLFTRM 339 (991)
Q Consensus 310 -----~~v----~~~~-----~-~~~~~~l~~L~~~~~~~Lf~~~ 339 (991)
..+ ...+ . -...+.+.+++.++-.+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 1111 1 1236778888888777776554
No 226
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.29 E-value=0.0015 Score=73.94 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=59.8
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCCCCcEEE-Ee---------cC----c----HHHHHHhCCCCceecCCCChHHHH
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGVSGSKIV-VT---------TR----S----ERVARITSKLPFHALRGLPEDMSW 333 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vT---------TR----~----~~v~~~~~~~~~~~l~~L~~~~~~ 333 (991)
-++++|++..-+.+....+...+...... .+| .| |. . +.+...+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999888777788888877665444 344 34 32 1 1122222 24689999999999
Q ss_pred HHHHHHHccCCCCCCChhHHHHHHHHHhhc-CCchHHHHHH
Q 001955 334 SLFTRMAFEQGSEPKDSKLVQIGKDVVGKC-AGVPLAIRTI 373 (991)
Q Consensus 334 ~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c-~GlPLal~~~ 373 (991)
+++...+-..+... -.+....|++.+ +|.|-.+..+
T Consensus 373 ~iL~~~~~~~~~~~----~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 373 QIIKIRAQTEGINI----SEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHTCCB----CHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHhCCCC----CHHHHHHHHHHccCCCHHHHHHH
Confidence 99987763222111 124456777777 7877655444
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.21 E-value=0.0014 Score=79.67 Aligned_cols=156 Identities=13% Similarity=0.197 Sum_probs=84.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccc---c-ccccceEEE-EecCCCChHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDV---K-THFNLRMWV-CVSDIFDVTTI 238 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~F~~~~wv-~~s~~~~~~~~ 238 (991)
..++||+.+++++.+.|.... ..-+.|+|.+|+||||+|+.+++...- . ......+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 458999999999999997542 234689999999999999999873210 0 011222221 1111 0
Q ss_pred HHHHHHHccCCCCcccCHHHHHHHHHhHh-CCceeEEEeccccccC------hHHHHHHHHHhcC--CCCCcEEEEecCc
Q 001955 239 VEKMIRSATNRESEKLDLDQLQERLRGEI-DGKRYLLVLDDVWNEN------RDKWLELEALLMN--GVSGSKIVVTTRS 309 (991)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~--~~~gs~iivTTR~ 309 (991)
+.+.. .....+.....+.+.+ ..++.+|++|++.... ... .+....+.. ...+.++|.+|..
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~-~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ-VDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH-HHHHHHHSSCSSSCCCEEEEEECH
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch-HHHHHHHHHHHhCCCeEEEEEeCc
Confidence 00011 1112232223333333 3457899999996430 001 122222222 1234567777765
Q ss_pred HHHHHHhCC-------CCceecCCCChHHHHHHHHHHH
Q 001955 310 ERVARITSK-------LPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 310 ~~v~~~~~~-------~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
......... -..+.+++.+.++..+++...+
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 443211111 1157789999999888887644
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0016 Score=71.80 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=94.6
Q ss_pred CceeecchhHHHHHHHHhC----CCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLD----SSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.. +.- ......+-|.++|+||.|||++|+++++. ....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 4578999888888776432 100 00224567899999999999999999983 22222 2333322111
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHh-HhCCceeEEEecccccc-------C---hHH----HHHHHHHhcCC--CC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRG-EIDGKRYLLVLDDVWNE-------N---RDK----WLELEALLMNG--VS 299 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdv~~~-------~---~~~----~~~l~~~l~~~--~~ 299 (991)
.. .. ..+...+.+.. .-...+.+|++|+++.. . ... ...+...+... ..
T Consensus 254 ------------~~-vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------MY-IG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------SC-SS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------cc-cc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 00 00 11122222222 22246899999998531 0 011 11233333322 23
Q ss_pred CcEEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 300 GSKIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 300 gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
+-.||.||...+.... ......+.++..+.++-.++|..+....... ..-++ ..|++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINW----QELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCH----HHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCH----HHHHHhCCCCC
Confidence 4466778876543221 1122367788888888888887765433221 11223 56777887753
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.20 E-value=0.0025 Score=71.55 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=95.7
Q ss_pred CceeecchhHHHHHHHHh---CCCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLL---DSSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++++.+.+. .... -...-.+-|.|+|++|+|||+||+.+++. ....| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 358899887766665543 2100 00011233789999999999999999973 22222 23333322110
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh--------------HHHHHHHHHhcC--CCCCc
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR--------------DKWLELEALLMN--GVSGS 301 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs 301 (991)
+. ......+...+.......+.+|+||+++.... ....++...+.. ...+.
T Consensus 89 --------~~-----g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------FV-----GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------CT-----THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------Hh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 00112233334444456789999999965210 112233333321 12455
Q ss_pred EEEEecCcHHHHHH--hC---CCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 302 KIVVTTRSERVARI--TS---KLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 302 ~iivTTR~~~v~~~--~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
.||.||...+.... .. ....+.++..+.++-.+++..++...... ...+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhh----HHHHHHhcCCCc
Confidence 67777776543221 11 22367788888888888887766433211 1112 245788888876
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0045 Score=67.38 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=94.5
Q ss_pred CceeecchhHHHHHHHHhCC---CC----CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDS---SE----SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+.+.-. .+ ......+-|.++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 35778888888877765321 00 00124567899999999999999999983 22222 2233222110
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHH-hHhCCceeEEEecccccc-----------Ch---HHHHHHHHHhcC--CCC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLR-GEIDGKRYLLVLDDVWNE-----------NR---DKWLELEALLMN--GVS 299 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~ 299 (991)
.. ..+.+...+.+. ..-...+.+|++|+++.. +. .....+...+.. ...
T Consensus 255 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 ------------KY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------cc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00 011122222222 222356899999998631 00 111222222222 234
Q ss_pred CcEEEEecCcHHHHHHh-----CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 300 GSKIVVTTRSERVARIT-----SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 300 gs~iivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
+..||.||...+..... ..+..+.++.-+.++-.++|..+.-..... .+.++ ..|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCH----HHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCH----HHHHHhCCCCC
Confidence 55677788765433211 112256677778888888888776443221 12233 56677777653
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.03 E-value=0.00082 Score=81.59 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=77.8
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCcc---ccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDED---VKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+++... +-......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 459999999999999997632 22368999999999999999987310 000000111111111
Q ss_pred HHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHhC---
Q 001955 241 KMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVARITS--- 317 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~~--- 317 (991)
.....+. .......+ +...-..++.+|++|.. .+....+...+. ....++|.||..........
T Consensus 245 --g~~~~G~--~e~~l~~~---~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FEDRLKKV---MDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHHHHHHH---HHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 0000000 01122222 33333367889999921 111111211121 23456666665443111111
Q ss_pred ----CCCceecCCCChHHHHHHHHHHH
Q 001955 318 ----KLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 318 ----~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.-..+.+++.+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11357899999999999998654
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.98 E-value=0.002 Score=69.73 Aligned_cols=152 Identities=11% Similarity=0.118 Sum_probs=85.4
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIR 244 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 244 (991)
.++|++..++.+...+... +-+.++|++|+|||++|+.+++. ....| ..+.+.......++. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHH----E
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcC----C
Confidence 4889999999888887653 24889999999999999999873 22222 233333333333221 1
Q ss_pred HccCCCCcccCHHHHHHHHHhHhCC--ceeEEEeccccccChHHHHHHHHHhcCC-----------CCCcEEEEecCcHH
Q 001955 245 SATNRESEKLDLDQLQERLRGEIDG--KRYLLVLDDVWNENRDKWLELEALLMNG-----------VSGSKIVVTTRSER 311 (991)
Q Consensus 245 ~l~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTTR~~~ 311 (991)
......... .. ..-.+ ...++++|+++.........+...+... .....|+.|+....
T Consensus 91 ~~~~~~~~~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHKG-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTTT-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCCC-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 110000000 00 00001 1258999999887666666665555432 23445555655211
Q ss_pred ------H-HHHhCCCC-ceecCCCChHHHHHHHHHHHcc
Q 001955 312 ------V-ARITSKLP-FHALRGLPEDMSWSLFTRMAFE 342 (991)
Q Consensus 312 ------v-~~~~~~~~-~~~l~~L~~~~~~~Lf~~~a~~ 342 (991)
+ ......-. .+.+.+.+.++-.+++.+.+..
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 01111112 4778888999988888887643
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.91 E-value=0.00013 Score=76.41 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=88.5
Q ss_pred CceeecchhHHHHHHHHhCCCCC------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..++.+.+.+..-... .....+-+.|+|++|+|||++|+.+++. ....| +.+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH---
Confidence 45899998888877765410000 0001223779999999999999999973 22222 1111111100
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChH---------------HHHHHHHHhcCC---CC
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRD---------------KWLELEALLMNG---VS 299 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~---------------~~~~l~~~l~~~---~~ 299 (991)
...+.. ......+.. .....++.+|+||+++..... ....+...+... ..
T Consensus 83 -------~~~~~~--~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGLG--ASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSSC--SSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcchH--HHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 011110 011111111 122245689999999653111 011121112111 12
Q ss_pred CcEEEEecCcHHHHH--Hh---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCchH
Q 001955 300 GSKIVVTTRSERVAR--IT---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVPL 368 (991)
Q Consensus 300 gs~iivTTR~~~v~~--~~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL 368 (991)
...||.||....... .. .....+.++..+.++-.+++...+...... ...++ ..|++.+.|.|-
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCT----TTTTSSSCSSCH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCH----HHHHHHcCCCCH
Confidence 245777776543211 11 123457788888898888887765332211 11111 346667777653
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.90 E-value=0.002 Score=68.14 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.87 E-value=0.046 Score=60.07 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCCCccCeeeeccCCCCCCCCCccCCCCCCccEEEEecCCCCCccc-ccCCCCCCCCeEeeecCCCCCcCCCC
Q 001955 870 EPPFSKLKSLTIESIDDLETWPEEMMPNFPSIQNISIELCPKLISLP-QRLNKATTLKTVGIYDCPNMAILPEG 942 (991)
Q Consensus 870 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~ 942 (991)
+..+.+|+.+.+.. .+..++...|.++++|+.+.+.++ .++.++ ..+.++++|+.+.|.+ .++.++..
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~ 327 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY 327 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTT
T ss_pred cceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHH
Confidence 34567788888754 477788878899999999999876 677776 4578899999999854 36666554
No 236
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.82 E-value=0.0036 Score=76.90 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=74.2
Q ss_pred ceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHH
Q 001955 165 DIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEK 241 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 241 (991)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++.. ...-...+.++++...... ..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~-~~-- 633 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AV-- 633 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG-GG--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh-HH--
Confidence 47999998888888775421 1111234689999999999999999998731 1111123444444322210 00
Q ss_pred HHHHccCCCCc---ccCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEec
Q 001955 242 MIRSATNRESE---KLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTT 307 (991)
Q Consensus 242 i~~~l~~~~~~---~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTT 307 (991)
..+.+..+. ......+...+.. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 634 --s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 634 --SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp --GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred --HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 111100000 0001122233322 234589999998877777777777776542 244577777
Q ss_pred Cc
Q 001955 308 RS 309 (991)
Q Consensus 308 R~ 309 (991)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.79 E-value=0.0045 Score=73.65 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=97.8
Q ss_pred CceeecchhHHHHHHHHh----CCCC---CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLL----DSSE---SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.+++|.+++. .+.- -.....+-|.++|++|.|||+||+++++. ...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 357888888888877653 1110 00224567899999999999999999984 22222 2333211
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hHHHHHHHHHhcCC--CCCcEE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEALLMNG--VSGSKI 303 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~i 303 (991)
+.... .......+...+....+..+.+|+||+++.-- .....++...+... ..+..|
T Consensus 274 -----l~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11111 11122333344444445678999999996421 01112222222221 234456
Q ss_pred EEecCcHHHHHH-h----CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 304 VVTTRSERVARI-T----SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 304 ivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
|.||...+.... + .....+.+...+.++-.++|..+...... ..+.++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCC
Confidence 667765432211 1 22346778888888888888876533221 112223 56778888765
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.79 E-value=0.0007 Score=70.78 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=46.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe--cCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV--SDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L 267 (991)
.-+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. . ..+.+...+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~------~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------Y------NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------C------BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------h------hcCHHHHHHHHHHHH
Confidence 3457789999999999999999863 1124567776 332111 0 034566666666666
Q ss_pred CCceeEEEeccccc
Q 001955 268 DGKRYLLVLDDVWN 281 (991)
Q Consensus 268 ~~kr~LlVlDdv~~ 281 (991)
.+.+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5556 999999954
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.79 E-value=0.0042 Score=75.48 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=74.3
Q ss_pred CceeecchhHHHHHHHHhCCC---CCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSS---ESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE 240 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 240 (991)
..++|.+..++.+...+.... .........+.++|++|+|||++|+.+++.. . ...+.++++...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 458899988888877765311 1112244679999999999999999999732 1 2234445443322100
Q ss_pred HHHHHccCCCCcccCH---HHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEe
Q 001955 241 KMIRSATNRESEKLDL---DQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVT 306 (991)
Q Consensus 241 ~i~~~l~~~~~~~~~~---~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 306 (991)
...+.+..+..... ..+...++. ...-+|+||++.....+....+...+..+. ....||+|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111010 112222322 346799999998877776777777665431 23457777
Q ss_pred cCc
Q 001955 307 TRS 309 (991)
Q Consensus 307 TR~ 309 (991)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 753
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.0051 Score=61.86 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=51.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC-----------CC-CcccCHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN-----------RE-SEKLDLD 257 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 257 (991)
.-.++.|+|.+|+||||+|..++. ..-..++|++....++..++.. +.+..+. .. .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999986 1123577887766555554443 3332221 01 1111223
Q ss_pred HHHHHHHhHhCCceeEEEeccccc
Q 001955 258 QLQERLRGEIDGKRYLLVLDDVWN 281 (991)
Q Consensus 258 ~l~~~l~~~L~~kr~LlVlDdv~~ 281 (991)
+....+...++.+.-+||+|....
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344455555544577999999753
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.66 E-value=0.0015 Score=69.58 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=34.3
Q ss_pred chhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEe
Q 001955 170 DGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCV 229 (991)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 229 (991)
...++.+.+++..... .....+.|+|++|+|||+||+.+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344455566654321 12457889999999999999999984220 22233555654
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.55 E-value=0.0063 Score=73.70 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=93.0
Q ss_pred CceeecchhHHHHHHHHhCCCC-------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSE-------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++++.+++...-. -.......|.|+|++|+||||||+.++.. ....| +.+..+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~l---- 274 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEI---- 274 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchHh----
Confidence 4589999999998887753000 00123456899999999999999999873 22222 33332111
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC-----------hHHHHHHHHHhcCC--CCCcEE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN-----------RDKWLELEALLMNG--VSGSKI 303 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~i 303 (991)
.... .......+...+.......+.++++|++...- ......+...+... ..+..+
T Consensus 275 ----------~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 275 ----------MSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ----------SSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ----------hhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 0000 00111222233333333457899999994321 11122333333322 234466
Q ss_pred EEecCcHHHHH-Hh----CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 304 VVTTRSERVAR-IT----SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 304 ivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
|.||....... .. .....+.+...+.++-.+++...+-.... ....++ .+++..+.|..
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCT----HHHHHSCSSCC
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchh----HHHHHhhcCcc
Confidence 66666542211 11 11224567778888888888776533221 111122 44566666654
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.49 E-value=0.0035 Score=62.55 Aligned_cols=113 Identities=10% Similarity=-0.068 Sum_probs=64.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC--CcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE--SEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~l~~~l~~~L 267 (991)
.-.++.|+|.+|+||||++..+... ...+-..++.+...... + ...++++.++... ......+++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3468999999999999999777763 22222234444333221 1 1123344443211 11233456666666655
Q ss_pred CCcee-EEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 268 DGKRY-LLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 268 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
.+.++ +||+|.+..-+.+..+.+.. +.+ .|-.||+|-++.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 55544 99999997654344444433 332 267899998853
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.49 E-value=0.0026 Score=73.38 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=76.6
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMI 243 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 243 (991)
.+++|.+.-.+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 347887777776655433110000113458999999999999999999973 22222 1222222222111111110
Q ss_pred HHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccChHH----HHHHHHHhcCCC---------------CCcEEE
Q 001955 244 RSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENRDK----WLELEALLMNGV---------------SGSKIV 304 (991)
Q Consensus 244 ~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~---------------~gs~ii 304 (991)
..++ .....+...+...-. ..-+++||+++...... ...+...+.... ....+|
T Consensus 156 ~~ig------~~~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 1111 001112222232222 33388899997653221 122333332111 234677
Q ss_pred EecCcH-----HHHHHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 305 VTTRSE-----RVARITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 305 vTTR~~-----~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.||... .+...+ .++.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 776643 233333 357888888888888777654
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.25 E-value=0.022 Score=64.24 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=90.2
Q ss_pred CceeecchhHHHHHHHHh---CCCCCC---CCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHH
Q 001955 164 EDIIGRDGDKNEIIDRLL---DSSESE---IESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTT 237 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~---~~~~~~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 237 (991)
.+++|.+..+.++.+... ....-. ..-.+-+.|+|++|+||||||+.++... . ...+.++.+.-.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVEM-- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTSS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHHh--
Confidence 458898877666655432 210000 0011238999999999999999999732 2 12334443321110
Q ss_pred HHHHHHHHccCCCCcccCHHHHHHHHHhHhC----CceeEEEeccccccC----------hHHH----HHHHHHhcCCC-
Q 001955 238 IVEKMIRSATNRESEKLDLDQLQERLRGEID----GKRYLLVLDDVWNEN----------RDKW----LELEALLMNGV- 298 (991)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~- 298 (991)
. .......+...++ ..+.++++|+++... ...+ .++...+..+.
T Consensus 104 ------------~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 ------------F-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ------------C-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ------------h-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0011112222222 235799999995321 1222 22333333222
Q ss_pred -CCcEEEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 299 -SGSKIVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 299 -~gs~iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
.+..|+.||..+++... ......+.++..+.++-.+++..++-.... ....+ ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 34456667776654221 122346778888888888888776532211 11111 245777787765
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.25 E-value=0.023 Score=58.58 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=86.3
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..+.++.+....-... -..... +.|+|++|+||||||+.++... . ...+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH------
Confidence 35778776655554433210000 000122 8999999999999999999732 2 122333221
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC----------hHHH----HHHHHHhcCCC--CC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN----------RDKW----LELEALLMNGV--SG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~~--~g 300 (991)
.+ ..... ......+...++..-.....++++|++.... ...+ ..+...+..+. ..
T Consensus 84 ~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HH----HHSCT-----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HH----HHHHh-----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11100 0011122222222222346899999994310 0111 22333333322 22
Q ss_pred cEEEEecCcHHHHHH--h---CCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERVARI--T---SKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..++.||..+++... . .....+.++..+.++-.+++..++-.... ....+ ...|++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-CcccC----HHHHHHHcCCCC
Confidence 345556665544321 1 22336778888888888888776532211 11111 245777777754
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.10 E-value=0.022 Score=62.59 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999997
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.05 E-value=0.011 Score=57.09 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=61.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC---CChHHHHHHHHHHc---cC----CCCc----ccCHH
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI---FDVTTIVEKMIRSA---TN----RESE----KLDLD 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l---~~----~~~~----~~~~~ 257 (991)
..|-|++-.|.||||.|-...- +..++=..+.++.+.+. .....++..+.-.+ +. ...+ .....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4677777788999999966554 22222223445544332 22333333321000 00 0000 01122
Q ss_pred HHHHHHHhHhCCcee-EEEecccccc---ChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 258 QLQERLRGEIDGKRY-LLVLDDVWNE---NRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 258 ~l~~~l~~~L~~kr~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
......++.+.+.+| |||||++-.. .....+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 334445555655544 9999998331 1233455666676666778999999985
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.01 E-value=0.063 Score=58.02 Aligned_cols=157 Identities=12% Similarity=-0.076 Sum_probs=100.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHh-HhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRG-EIDG 269 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~L~~ 269 (991)
..+..++|..|.||++.|+.+.+... ...|+....+.+.... +..++.+.+.. -+.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 45888999999999999988876311 1234221112222222 23333333322 1346
Q ss_pred ceeEEEeccccc-cChHHHHHHHHHhcCCCCCcEEEEecCc-------HHHHHHh-CCCCceecCCCChHHHHHHHHHHH
Q 001955 270 KRYLLVLDDVWN-ENRDKWLELEALLMNGVSGSKIVVTTRS-------ERVARIT-SKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 270 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
.+-++|+|+++. -....++.+...+....+++.+|++|.. ..+.... .....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999876 4556788888888776677777776643 2344443 333478899999999988887776
Q ss_pred ccCCCCCCChhHHHHHHHHHhhcCCchHHHHHH
Q 001955 341 FEQGSEPKDSKLVQIGKDVVGKCAGVPLAIRTI 373 (991)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLal~~~ 373 (991)
-..+... -.+.+..+++.++|.+.++...
T Consensus 156 ~~~g~~i----~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLEL----DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCEE----CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCCC----CHHHHHHHHHHhchHHHHHHHH
Confidence 4433211 1356788999999998877654
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.033 Score=57.96 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=78.2
Q ss_pred ceeecchhHHHHHHHHhCCCC--------CCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 165 DIIGRDGDKNEIIDRLLDSSE--------SEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
++.|.++.++++.+.+...-. .-....+ +.++|++|.||||||+.++..... ..+++......+..
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY 84 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh
Confidence 366777666666554321000 0001122 899999999999999999973211 23444432211100
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCceeEEEeccccccC-----------hHHHHHHHHHhcCCC--CCcE
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGKRYLLVLDDVWNEN-----------RDKWLELEALLMNGV--SGSK 302 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~ 302 (991)
....+.....+.+. -...+.++++|+++..- ......+...+..+. ...-
T Consensus 85 ----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 ----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 00011111122221 12457899999986420 011122333343322 3345
Q ss_pred EEEecCcHHHHHH-----hCCCCceecCCCChHHHHHHHHHHH
Q 001955 303 IVVTTRSERVARI-----TSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 303 iivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
++.+|..+++... ......+.++..+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5667766554322 1234466788888888888888765
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.00 E-value=0.036 Score=57.89 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=87.5
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.+++|.+..++++.+....-... -.-... +.|+|++|+||||||+.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH------
Confidence 45888887666665543211000 000122 8999999999999999999732 2 122333321
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccC----------hHHHH----HHHHHhcCCCC--C
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNEN----------RDKWL----ELEALLMNGVS--G 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~----------~~~~~----~l~~~l~~~~~--g 300 (991)
.+ ..... ......+...++..-...+.++|+|++.... ...+. .+...+..+.. .
T Consensus 108 ~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11100 0001112222222222356899999994210 01111 22222332222 2
Q ss_pred cEEEEecCcHHHH-----HHhCCCCceecCCCChHHHHHHHHHHHccCCCCCCChhHHHHHHHHHhhcCCch
Q 001955 301 SKIVVTTRSERVA-----RITSKLPFHALRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKCAGVP 367 (991)
Q Consensus 301 s~iivTTR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 367 (991)
..++.||..+++. ........+.++..+.++-.+++..++-.... ..... ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccC----HHHHHHHcCCCC
Confidence 3444566654332 11123446788888888888888876533211 11111 245677777755
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.93 E-value=0.023 Score=57.50 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=60.3
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCC--------------------
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRES-------------------- 251 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 251 (991)
.++.|+|.+|+|||||++.++.... ..=..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999999885321 1112455665433 3444433332 2221100
Q ss_pred ---cccCHHHHHHHHHhHhCC-ce--eEEEecccccc---ChHHHHHHHHHhcC--CCCCcEEEEecCcH
Q 001955 252 ---EKLDLDQLQERLRGEIDG-KR--YLLVLDDVWNE---NRDKWLELEALLMN--GVSGSKIVVTTRSE 310 (991)
Q Consensus 252 ---~~~~~~~l~~~l~~~L~~-kr--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTTR~~ 310 (991)
...+.+++...+...+.. +. .+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111445555555544422 33 49999998632 22233333333322 12477888888764
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.86 E-value=0.071 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988864
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.083 Score=50.52 Aligned_cols=19 Identities=47% Similarity=0.740 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHH
Q 001955 193 VIPIVGIGGLGKTAVAQLV 211 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v 211 (991)
+|.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.019 Score=61.72 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-.++.|+|++|+||||||.+++.... ..=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999886322 111346788877666644 333343221 12345566666665
Q ss_pred hHhC-CceeEEEeccccc
Q 001955 265 GEID-GKRYLLVLDDVWN 281 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~~ 281 (991)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4556889998743
No 256
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.77 E-value=0.022 Score=61.87 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=32.5
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|.+..++.+........ ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 348898886665544444321 123889999999999999999873
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.59 E-value=0.01 Score=56.82 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997654
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.47 E-value=0.038 Score=59.12 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=38.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCcccccc----ccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTH----FNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+||||+|.+++........ -..++|++....++..++.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3458999999999999999888753211111 23678998888777766553 344443
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.40 E-value=0.027 Score=57.42 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=50.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc----cccceEEEEecCCCChHHHHHHHHHHccCCC---------CcccCH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT----HFNLRMWVCVSDIFDVTTIVEKMIRSATNRE---------SEKLDL 256 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 256 (991)
.-.++.|+|++|+|||||++.++....... .-..++|++....+...++. ++++.++... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345899999999999999998886211111 12467888877655554433 3334443211 011122
Q ss_pred HH---HHHHHHhHhC-CceeEEEeccccc
Q 001955 257 DQ---LQERLRGEID-GKRYLLVLDDVWN 281 (991)
Q Consensus 257 ~~---l~~~l~~~L~-~kr~LlVlDdv~~ 281 (991)
++ ....+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2223333333 3566888888743
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.36 E-value=0.041 Score=59.55 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-.++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++... ....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34588899999999999998887632 1122368899887766543 133443221 12235566666666
Q ss_pred hHhCC-ceeEEEecccc
Q 001955 265 GEIDG-KRYLLVLDDVW 280 (991)
Q Consensus 265 ~~L~~-kr~LlVlDdv~ 280 (991)
...+. ..-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 65543 45589999974
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.36 E-value=0.029 Score=60.06 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=38.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc---------cc-----cceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT---------HF-----NLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999988875311110 11 4678998888777776653 344443
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.35 E-value=0.038 Score=57.46 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=52.0
Q ss_pred EEEEEecCCChHHHHHHHHhCCcccccc--ccceEEEEecCCCChHHHHHHHHHHccCCCC-----cccCHHHH-HHHHH
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKTH--FNLRMWVCVSDIFDVTTIVEKMIRSATNRES-----EKLDLDQL-QERLR 264 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l-~~~l~ 264 (991)
++-|+|.+|+||||||.+++.. .... =..++|++....++... +++++.+.. ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999877753 2222 13578988877776542 555653321 22345555 33332
Q ss_pred hH--h-CCceeEEEeccccc
Q 001955 265 GE--I-DGKRYLLVLDDVWN 281 (991)
Q Consensus 265 ~~--L-~~kr~LlVlDdv~~ 281 (991)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 35678999999854
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.32 E-value=0.19 Score=50.39 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=33.6
Q ss_pred HHHhHhCCceeEEEecccccc-ChHHHHHHHHHh-cCCCCCcEEEEecCcHHHHHH
Q 001955 262 RLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALL-MNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 262 ~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~iivTTR~~~v~~~ 315 (991)
.|...|..++=+++||+--.. |......+...+ .....|..||++|.+...+..
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 344555667778999997443 344445555543 333346788899988776643
No 264
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.28 E-value=0.048 Score=58.82 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=39.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc----cccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT----HFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 557999999999999999988875311111 124678998888777766543 344443
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.25 E-value=0.095 Score=53.01 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHhHhCCceeEEEecccccc-ChHHHHHHHHHhc---CCCCCcEEEEecCcHHHHH
Q 001955 263 LRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLM---NGVSGSKIVVTTRSERVAR 314 (991)
Q Consensus 263 l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~---~~~~gs~iivTTR~~~v~~ 314 (991)
|...|-.++=+++||+--.. |......+...+. ....|..||++|.+...+.
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 44455566778899987443 3444455666663 2234778888888766543
No 266
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.24 E-value=0.045 Score=58.93 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-.++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 446899999999999999988875321 112357888887766543 233443211 12234566655555
Q ss_pred hHhC-CceeEEEeccccc
Q 001955 265 GEID-GKRYLLVLDDVWN 281 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~~ 281 (991)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3466999999854
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.20 E-value=0.019 Score=56.72 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 169 RDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566777887777532 23567999999999999999998886
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.08 E-value=0.079 Score=55.89 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|.|.+|+|||||++.++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999988864
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.88 E-value=0.048 Score=57.26 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=44.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
..++++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3469999999999999999888863221111 13445543221 122233333333333221112233444444443 3
Q ss_pred CceeEEEecc
Q 001955 269 GKRYLLVLDD 278 (991)
Q Consensus 269 ~kr~LlVlDd 278 (991)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3445788884
No 270
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.85 E-value=0.067 Score=56.53 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=51.9
Q ss_pred eecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 167 IGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
+|....+..+...+..... .....+|+|.|..|+||||+|+.+..-......-..+..+....-+-........ ...
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~-~~~ 146 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQ-GLM 146 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHT-TCG
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhH-HHH
Confidence 3444455555555554322 3467899999999999999999887521100000123344433322111111110 000
Q ss_pred -cCCCCcccCHHHHHHHHHhHhCCc
Q 001955 247 -TNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 247 -~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
....+...+.+.+.+.+.....++
T Consensus 147 ~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 147 KRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred hhccCcccccHHHHHHHHHhhhccc
Confidence 011245566777777776665555
No 271
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.72 E-value=0.062 Score=57.90 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-+++.|+|.+|+||||||.+++.... ..=..++|++....++... +..++... ....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999988876322 1223578998877666432 33443221 11224455555554
Q ss_pred hHhC-CceeEEEeccccc
Q 001955 265 GEID-GKRYLLVLDDVWN 281 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~~ 281 (991)
...+ .+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 4332 4456899999843
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.60 E-value=0.012 Score=56.98 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=49.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCC--CCcccCHHHHHHHHHhHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNR--ESEKLDLDQLQERLRGEIDG 269 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~~~~~~~l~~~l~~~L~~ 269 (991)
.++.|+|+.|+||||++..++.....+ .. .++++..... .+.-...+....+.. .....+.++ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 478899999999999996555422111 11 2233322211 000000000001100 000111111 2233334
Q ss_pred ceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCc
Q 001955 270 KRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRS 309 (991)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~ 309 (991)
+.-+|++|.+..-+.+ |.+....+.+. |..|++|.++
T Consensus 76 ~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeec
Confidence 5679999999775433 44443333332 6789988774
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.59 E-value=0.073 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|++|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 274
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.59 E-value=0.063 Score=55.11 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=28.9
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+.+...+...... .....+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344454444433221 34568999999999999999999986
No 275
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.29 E-value=0.026 Score=60.21 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=25.9
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
++++.+..-. .-..++|+|.+|+|||||++.+.+
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHH
Confidence 4556555432 335889999999999999998886
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.29 E-value=0.21 Score=52.12 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=43.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccc-cccceEEEEecCCCChHHHHHHHHHHc------cC-CCCcccCHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKT-HFNLRMWVCVSDIFDVTTIVEKMIRSA------TN-RESEKLDLDQLQE 261 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~l~~ 261 (991)
...+|+|+|..|+||||||+.+.......+ ....+..|+...-+-.......+.... .. ..+...+.+.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~ 109 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 109 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHH
Confidence 678999999999999999998886322111 122334435433332333334433221 10 1244556666666
Q ss_pred HHHhHhCC
Q 001955 262 RLRGEIDG 269 (991)
Q Consensus 262 ~l~~~L~~ 269 (991)
.+.....+
T Consensus 110 ~l~~l~~g 117 (290)
T 1odf_A 110 VLNTIFNN 117 (290)
T ss_dssp HHHHHTC-
T ss_pred HHHHhhcc
Confidence 66554433
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.25 E-value=0.27 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.25 E-value=0.03 Score=55.56 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+++|.+.+... .+...+|+|+|+.|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 12567999999999999999999886
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.20 E-value=0.025 Score=63.97 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=35.4
Q ss_pred ceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++|++..++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4889999898888877643 25889999999999999999984
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.20 E-value=0.02 Score=55.13 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.19 E-value=0.26 Score=52.31 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=36.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
.-.++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 345899999999999999988875422222 456777654 46667777766543
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.16 E-value=0.057 Score=59.68 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=33.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHH
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMI 243 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 243 (991)
+.++|+|.+|+|||||++.+..+... ..-+..+++-+.+.. +..++++++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 35899999999999999988874222 122445666665544 3445555554
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.11 E-value=0.028 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.-.+++|+|++|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.09 E-value=0.2 Score=50.88 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=27.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSD 231 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 231 (991)
-.++.|.|.+|+||||+|.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 3589999999999999998776531 11123567776544
No 285
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.04 E-value=0.3 Score=50.08 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=61.8
Q ss_pred EEEEEecCCChHHHHHHHHhCCccccc--ccc-----------ceEEEEecCCC----ChH--------------HHHHH
Q 001955 193 VIPIVGIGGLGKTAVAQLVYNDEDVKT--HFN-----------LRMWVCVSDIF----DVT--------------TIVEK 241 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~-----------~~~wv~~s~~~----~~~--------------~~~~~ 241 (991)
+++|+|+.|.|||||++.++.-....+ .++ .+.| .+.+.. ++. +...+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 899999999999999999985320000 011 1220 122221 211 12234
Q ss_pred HHHHccCC-CC-----cccC-HHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHH
Q 001955 242 MIRSATNR-ES-----EKLD-LDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVA 313 (991)
Q Consensus 242 i~~~l~~~-~~-----~~~~-~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 313 (991)
+++.++.. .. ..-+ -+...-.|...|..++=+++||.--.. |...-..+...+..-.. .||++|.+.+.+
T Consensus 111 ~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~ 188 (263)
T 2pjz_A 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDML 188 (263)
T ss_dssp HHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGG
T ss_pred HHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHH
Confidence 44544432 11 1111 122223345556677789999996432 33444455555544333 788888876544
Q ss_pred H
Q 001955 314 R 314 (991)
Q Consensus 314 ~ 314 (991)
.
T Consensus 189 ~ 189 (263)
T 2pjz_A 189 N 189 (263)
T ss_dssp G
T ss_pred H
Confidence 3
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.03 E-value=0.076 Score=63.24 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=77.4
Q ss_pred CceeecchhHHHHHHHHhCCCCC-------CCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSES-------EIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT 236 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 236 (991)
.++.|.++.++++.+.+.-.... .....+-|.++|++|.|||.+|+++++.. ... ++.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEec----cc
Confidence 45678888888777765432110 01233457899999999999999999842 222 23332 11
Q ss_pred HHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCceeEEEeccccccCh--------------HHHHHHHHHhcCCC--CC
Q 001955 237 TIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKRYLLVLDDVWNENR--------------DKWLELEALLMNGV--SG 300 (991)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~~~--~g 300 (991)
+++....+ .....+.+.+...-+..+.+|+||+++.--. ....++...+.... .+
T Consensus 546 ----~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 546 ----ELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp ----HHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred ----hhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 22222211 1222333333333345789999999964210 01223333333322 23
Q ss_pred cEEEEecCcHH-----HHHHhCCCCceecCCCChHHHHHHHHHHH
Q 001955 301 SKIVVTTRSER-----VARITSKLPFHALRGLPEDMSWSLFTRMA 340 (991)
Q Consensus 301 s~iivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 340 (991)
--||-||..+. +.........+.++.-+.++-.++|..+.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 33444665432 22222334466676666666667776554
No 287
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.01 E-value=0.43 Score=51.16 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHh
Q 001955 260 QERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 260 ~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 316 (991)
.-.|...|..++=+|++|.--.. |...-..+...+..- ..|..||++|-+.+++..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 33456677788889999986432 333333444444331 2477899999987776554
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.99 E-value=0.13 Score=54.13 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChH--HHHHHHHHHccCCC---CcccCHHHH-HHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVT--TIVEKMIRSATNRE---SEKLDLDQL-QERL 263 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~l-~~~l 263 (991)
...++.|+|.+|+||||++..++... +..=..+.++.. +.+... +-+...++..+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 56899999999999999999888632 221123444443 333322 12233444433111 111222222 2344
Q ss_pred HhHhCCceeEEEecccc
Q 001955 264 RGEIDGKRYLLVLDDVW 280 (991)
Q Consensus 264 ~~~L~~kr~LlVlDdv~ 280 (991)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44444555578888653
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.03 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.91 E-value=0.028 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 291
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.89 E-value=0.11 Score=55.94 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=32.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccc---c-ceEEEEecCCCChHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHF---N-LRMWVCVSDIFDVTT 237 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~-~~~wv~~s~~~~~~~ 237 (991)
.-.++.|+|++|+|||||+..++......... . .++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 55799999999999999999988632111111 2 348888766554433
No 292
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.84 E-value=0.15 Score=55.88 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=36.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccc----cccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDV----KTHFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|+|.+|+|||||+..++-.-.. ...-..++|++....++..++. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 3458999999999999999976521111 1122457888877666555443 3444444
No 293
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.82 E-value=0.52 Score=49.02 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=33.3
Q ss_pred HHHhHhCCceeEEEecccccc-ChHHHHHHHHHh-cCCCCCcEEEEecCcHHHHHH
Q 001955 262 RLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALL-MNGVSGSKIVVTTRSERVARI 315 (991)
Q Consensus 262 ~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l-~~~~~gs~iivTTR~~~v~~~ 315 (991)
.|...|..++=+++||.--.. |...-..+...+ .....|..||++|.+...+..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 344555567778999997442 344444555543 232347789999988776643
No 294
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.79 E-value=0.088 Score=47.48 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=38.6
Q ss_pred cEEEccCCCcc--ccCccccCCCCccEEEccCCCCccccchh-hhcccCCCEEeCCCCC
Q 001955 578 RTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDS-VSRLLNLQTLDLSCCD 633 (991)
Q Consensus 578 ~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~L~~~~ 633 (991)
.+++.+++.++ .+|..+. .+|++|+|++|. +..+|.. +..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 46778888887 7776543 468888888888 6667664 5677788888888764
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.78 E-value=0.035 Score=60.60 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=35.5
Q ss_pred ceeecchhHHHHHHHHhC-------CC--CCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 165 DIIGRDGDKNEIIDRLLD-------SS--ESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++|.+..++.+...+.. .. .......+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 378988888888877720 00 000113456899999999999999999973
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.73 E-value=0.029 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.63 E-value=0.027 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.59 E-value=0.029 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.59 E-value=0.041 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|+|+|++|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 300
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.55 E-value=0.2 Score=55.39 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=60.0
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHHccCC----
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRSATNR---- 249 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---- 249 (991)
++++.|..-. +-+-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+.. ...++.+++.+.-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 3455555432 23468999999999999998888742 22344677888777655 4567777776531111
Q ss_pred ---C--------Ccc----cCHHHHHHHHHhHhC---CceeEEEeccc
Q 001955 250 ---E--------SEK----LDLDQLQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 250 ---~--------~~~----~~~~~l~~~l~~~L~---~kr~LlVlDdv 279 (991)
. .++ .......-.+.++++ ++.+|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 000 011122223445554 57999999999
No 301
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.51 E-value=0.51 Score=63.84 Aligned_cols=138 Identities=16% Similarity=0.067 Sum_probs=73.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhH-hCCc
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGE-IDGK 270 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-L~~k 270 (991)
+-|.++|++|+|||++|+.+.... ..+ ..+.++++...+...+++.+-..+......... +..- -.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 467899999999999997766531 122 245677777777766666655544321100000 0000 0367
Q ss_pred eeEEEeccccccCh------HHHHHHHHHhcCCC-----C-------CcEEEEecCcHH------HH-HHhCCCCceecC
Q 001955 271 RYLLVLDDVWNENR------DKWLELEALLMNGV-----S-------GSKIVVTTRSER------VA-RITSKLPFHALR 325 (991)
Q Consensus 271 r~LlVlDdv~~~~~------~~~~~l~~~l~~~~-----~-------gs~iivTTR~~~------v~-~~~~~~~~~~l~ 325 (991)
+.++.+||+.-... ...+-++..+..++ . +..+|.++-... +. .....-.++.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 89999999754322 23444555554321 1 123444443221 10 111112356677
Q ss_pred CCChHHHHHHHHHHH
Q 001955 326 GLPEDMSWSLFTRMA 340 (991)
Q Consensus 326 ~L~~~~~~~Lf~~~a 340 (991)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777776554
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.47 E-value=0.03 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.45 E-value=0.045 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.034 Score=53.67 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.40 E-value=0.038 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.37 E-value=0.048 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.37 E-value=0.07 Score=55.84 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=28.2
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++++..+...... .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~-~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKA-VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCC-CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433211 33567899999999999999999986
No 308
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.29 E-value=0.6 Score=49.98 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHhC
Q 001955 261 ERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVARITS 317 (991)
Q Consensus 261 ~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~ 317 (991)
-.|...|..++=+++||.--.. |...-..+...+..- ..|..||++|.+...+..+.
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 3456667778889999986332 333333333333221 12667898999877665543
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.14 E-value=0.055 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 310
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.09 E-value=0.74 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48999999999999999999863
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.08 E-value=0.076 Score=56.41 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=30.2
Q ss_pred ecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 168 GRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+-+.-.+++++.+...-. ......|.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344455566666542211 12456789999999999999998886
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.07 E-value=0.05 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.06 E-value=0.049 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 314
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.03 E-value=0.52 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988775
No 315
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.00 E-value=0.069 Score=57.56 Aligned_cols=112 Identities=12% Similarity=0.143 Sum_probs=60.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGK 270 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~k 270 (991)
-.+++|+|+.|+||||+++.+... .......++ +++.+..... .......+. +.....+.......+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhhC
Confidence 359999999999999999988763 111112222 2222221110 000000000 0000011122344677888888
Q ss_pred eeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHH
Q 001955 271 RYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVA 313 (991)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 313 (991)
+=+|++|...+ .+.+..+..... .|-.||+||-..+.+
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 99999999965 344444444322 366788888876544
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.99 E-value=0.043 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 317
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.98 E-value=0.19 Score=53.51 Aligned_cols=52 Identities=8% Similarity=-0.031 Sum_probs=35.5
Q ss_pred eEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
-.++.|.|.+|+||||+|..++.+... .=..++|++. .-+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358999999999999999888864222 1124556554 456677777776554
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.97 E-value=0.042 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 319
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.95 E-value=0.056 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.92 E-value=0.041 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 321
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.91 E-value=0.19 Score=56.62 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=26.6
Q ss_pred hhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 171 GDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+..+...+... -+.+.|.|.+|+||||++..+...
T Consensus 32 ~av~~~~~~i~~~-------~~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 32 NAFNIVMKAIKEK-------KHHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHSS-------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4444455555532 138999999999999999888864
No 322
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.88 E-value=0.054 Score=57.34 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=26.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEec
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVS 230 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 230 (991)
.+.+||+|+|-|||||||.|-.+.-- ....=..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 36799999999999999998666542 11111235556654
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.88 E-value=0.06 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 324
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.87 E-value=0.057 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999886
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.85 E-value=0.057 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.84 E-value=0.042 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 327
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.83 E-value=0.055 Score=55.51 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.82 E-value=0.051 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 329
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.81 E-value=0.051 Score=55.77 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 330
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.78 E-value=0.053 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.74 E-value=0.057 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999986
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.73 E-value=0.048 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 333
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.72 E-value=0.62 Score=49.76 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=64.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccc-c--ccc------------ceEEEEec----CCCChH---------------H
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVK-T--HFN------------LRMWVCVS----DIFDVT---------------T 237 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~------------~~~wv~~s----~~~~~~---------------~ 237 (991)
.+++|+|+.|.|||||.+.++--.... + .|+ .+.+|.-. ...++. +
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 489999999999999999998632110 0 111 12233111 011111 1
Q ss_pred HHHHHHHHccCCC-----Ccc-cCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecC
Q 001955 238 IVEKMIRSATNRE-----SEK-LDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTR 308 (991)
Q Consensus 238 ~~~~i~~~l~~~~-----~~~-~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR 308 (991)
-..++++.++... ... ..-+.-.-.|...|..++=+++||.--.. |...-..+...+..- ..|..||++|.
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 2234444444221 111 11222333456667778889999986332 323333333333221 23667888888
Q ss_pred cHHHHHHh
Q 001955 309 SERVARIT 316 (991)
Q Consensus 309 ~~~v~~~~ 316 (991)
+...+..+
T Consensus 187 d~~~~~~~ 194 (348)
T 3d31_A 187 DQTEARIM 194 (348)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 87655444
No 334
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.71 E-value=0.053 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.70 E-value=0.058 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.70 E-value=0.047 Score=52.38 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.64 E-value=0.81 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 48999999999999999999863
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.56 E-value=0.053 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999986
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.56 E-value=0.073 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 340
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.54 E-value=0.24 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999999863
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.50 E-value=0.072 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 342
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.49 E-value=0.046 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.48 E-value=0.061 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999886
No 344
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.46 E-value=0.059 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+|+|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.43 E-value=0.068 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 346
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.42 E-value=0.43 Score=50.91 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 174 NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-++++.+..-. .-+.++|+|.+|+|||+|++.+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 45677776532 3347899999999999999988874
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.41 E-value=0.05 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.38 E-value=0.066 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 349
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.37 E-value=0.05 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.35 E-value=0.048 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999875
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.31 E-value=0.063 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 352
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.31 E-value=0.46 Score=52.34 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=43.1
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCC-ChHHHHHHHHHH
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIF-DVTTIVEKMIRS 245 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 245 (991)
++++.|..-. +-+-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+.. ...++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4556665422 33578999999999999999888742 12333556777776644 456677777654
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.30 E-value=0.064 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.29 E-value=0.34 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888863
No 355
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.29 E-value=0.18 Score=48.76 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=18.0
Q ss_pred ccCCcccEEEccCCCcc-----ccCccccCCCCccEEEccCCC
Q 001955 572 SSFKCLRTLNLSNSEIE-----TVPSLIGKLKHLRYFNLSHNA 609 (991)
Q Consensus 572 ~~~~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~ 609 (991)
..-+.|+.|+|++|.+. .+-+.+..-..|++|+|++|.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 33445555555555554 122233334455555555555
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.25 E-value=0.062 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.23 E-value=0.066 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 358
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.15 E-value=0.47 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||.+.++--
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 48999999999999999999863
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.13 E-value=0.054 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.05 E-value=0.087 Score=53.65 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.03 E-value=0.076 Score=52.27 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999986
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.98 E-value=0.069 Score=52.13 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.97 E-value=0.095 Score=54.66 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999883
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.97 E-value=0.42 Score=50.71 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+++|+|+.|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998863
No 365
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.96 E-value=0.14 Score=56.05 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=50.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccc-ccc-ceEEEEecCC-CChHHHHHHHHHHccCC-------CCcccCHH----
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKT-HFN-LRMWVCVSDI-FDVTTIVEKMIRSATNR-------ESEKLDLD---- 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 257 (991)
+-++|.|.+|+|||+|+.++.+.....+ +=+ .++++-+.+. ....++.+++.+.=... ..+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 3478999999999999999987533211 111 4556666543 45566666655431000 01111111
Q ss_pred -HHHHHHHhHhC---CceeEEEeccc
Q 001955 258 -QLQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 258 -~l~~~l~~~L~---~kr~LlVlDdv 279 (991)
...-.+.++++ ++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11123345543 78999999999
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.95 E-value=0.085 Score=55.78 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999999999999999886
No 367
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.94 E-value=0.076 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|+|++|+||||+++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 368
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.91 E-value=0.06 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 369
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.90 E-value=0.51 Score=47.52 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=45.4
Q ss_pred EEEEEEecCCChHHHHHHHHhCC-ccccccc-cceEEEEecCCCChHHHHHHHHHHccCCC----------------C--
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND-EDVKTHF-NLRMWVCVSDIFDVTTIVEKMIRSATNRE----------------S-- 251 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----------------~-- 251 (991)
+.+.|.|..|+||||+.....-+ ....... ...+.+.........++.+.+...++... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999876544422 1111222 22333333332233344444444333210 0
Q ss_pred --cccCHHHHHHHHHhHhCCceeEEEeccccc
Q 001955 252 --EKLDLDQLQERLRGEIDGKRYLLVLDDVWN 281 (991)
Q Consensus 252 --~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~ 281 (991)
-..+...+.+.+...+.+- -+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0123455666665544333 4789999976
No 370
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.89 E-value=0.087 Score=51.03 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+..+..++..- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555431 23346899999999999999888873
No 371
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.79 E-value=0.092 Score=53.56 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 372
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.75 E-value=0.6 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888863
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.75 E-value=0.06 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=16.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 374
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.70 E-value=0.081 Score=51.44 Aligned_cols=24 Identities=13% Similarity=0.479 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 446899999999999999999885
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.70 E-value=0.42 Score=53.16 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=29.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD 234 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 234 (991)
...+++|+|..|+|||||++.++... + .-.+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll--~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF--E-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH--H-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh--h-hcCCeEEEecCcccc
Confidence 46799999999999999999988632 2 123455554444444
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.67 E-value=0.36 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999988886
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.66 E-value=0.079 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.65 E-value=0.41 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988863
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.62 E-value=0.074 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.59 E-value=0.088 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.54 E-value=0.19 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998886
No 382
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.53 E-value=0.12 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.52 E-value=0.086 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|.|++|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 384
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.52 E-value=0.17 Score=55.41 Aligned_cols=88 Identities=11% Similarity=0.260 Sum_probs=50.2
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccc--------cccc-ceEEEEecCC-CChHHHHHHHHHHc--cC-----CCCccc
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVK--------THFN-LRMWVCVSDI-FDVTTIVEKMIRSA--TN-----RESEKL 254 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~-~~~~~~~~~i~~~l--~~-----~~~~~~ 254 (991)
+-++|.|.+|+|||+|+.++++..... ++=+ .++++-+.+. ....++.+++.+.= .. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999998753321 1111 4556666544 34556666654421 00 001111
Q ss_pred CHHH-----HHHHHHhHhC---CceeEEEeccc
Q 001955 255 DLDQ-----LQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 255 ~~~~-----l~~~l~~~L~---~kr~LlVlDdv 279 (991)
.... ..-.+.++++ ++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1223345543 78999999999
No 385
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.48 E-value=0.095 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999885
No 386
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.44 E-value=0.45 Score=54.29 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=36.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHcc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSAT 247 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 247 (991)
.-.++.|.|.+|+||||+|.+++.+.... +=..++|++... +..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 34688999999999999998887642221 112466776543 56677776655443
No 387
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.42 E-value=0.2 Score=57.84 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=51.5
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHH-hHhC--
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLR-GEID-- 268 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~L~-- 268 (991)
+++.|.|.+|+||||++..+....... ...+.+..........+ .+.++.. ..+...+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L----~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRL----GEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHH----HHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHh----Hhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 478899999999999998888632211 12344443332222222 2222211 111111110000 0000
Q ss_pred ---CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEe
Q 001955 269 ---GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVT 306 (991)
Q Consensus 269 ---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 306 (991)
.+--+||+|.+...+...+..+...++ .+.++|+.
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 123489999998776665565554443 56677664
No 388
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.41 E-value=0.41 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|.++|.+|+||||++..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999988885
No 389
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.38 E-value=0.25 Score=47.78 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred hhhhhccCCcccEEEccCC-Ccc-----ccCccccCCCCccEEEccCCCCcc-----ccchhhhcccCCCEEeCCCCCCC
Q 001955 567 CNKIVSSFKCLRTLNLSNS-EIE-----TVPSLIGKLKHLRYFNLSHNADIK-----SLPDSVSRLLNLQTLDLSCCDDL 635 (991)
Q Consensus 567 ~~~~~~~~~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~~~~-----~lP~~i~~L~~L~~L~L~~~~~~ 635 (991)
+..++.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|. ++ .+.+.+..-+.|+.|+|++|..-
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4556677788999999985 775 244556677899999999998 44 34445666778999999986533
Q ss_pred cc----ccccccccccCcEEeeccc
Q 001955 636 VE----LPRDIGKMVSLRHLAIESC 656 (991)
Q Consensus 636 ~~----lp~~i~~L~~L~~L~l~~~ 656 (991)
.. +-..+..-+.|++|++++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 21 2233444456888887654
No 390
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.36 E-value=0.54 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCceEEEEEEecCCChHHHHHHHHhC
Q 001955 188 IESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 188 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35789999999999999999998886
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.35 E-value=0.088 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.32 E-value=0.11 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999986
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.27 E-value=0.092 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.26 E-value=0.11 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.24 E-value=1.1 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||.+.++--
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999853
No 396
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.10 E-value=0.39 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++.++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988886
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.05 E-value=0.11 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.05 E-value=0.13 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|.|.|++|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999986
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.95 E-value=0.13 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 400
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.94 E-value=0.096 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999886
No 401
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.91 E-value=0.11 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999886
No 402
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.89 E-value=0.23 Score=53.91 Aligned_cols=111 Identities=10% Similarity=0.143 Sum_probs=55.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceE-EEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRM-WVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEID 268 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~ 268 (991)
.-.+++|+|+.|+||||+++.+... ......+.+ ++. +..... .+.-..-+. +..-..+...+...+...|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~~--~~~~~~~v~-Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEYV--FKHKKSIVN-QREVGEDTKSFADALRAALR 207 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCSC--CCCSSSEEE-EEEBTTTBSCSHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhhh--hccCceEEE-eeecCCCHHHHHHHHHHHhh
Confidence 4468999999999999999988863 111112333 222 111100 000000000 00000011122345666676
Q ss_pred CceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHH
Q 001955 269 GKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERV 312 (991)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v 312 (991)
..+=+|++|.+.+. +......... ..|-.|+.|+-...+
T Consensus 208 ~~pd~illdE~~d~--e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 208 EDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp SCCSEEEESCCCSH--HHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hCcCEEEECCCCCH--HHHHHHHHHH---hcCCEEEEEECcchH
Confidence 67789999999643 3333322222 346667777776443
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.87 E-value=0.11 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+|+|.|++|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.82 E-value=0.32 Score=51.82 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=54.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCCcccCHHHHHHHHHhHhCCce
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRESEKLDLDQLQERLRGEIDGKR 271 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~L~~kr 271 (991)
.+++|+|+.|.|||||++.+..... .-.+.+.+.-......... + ..+.--.. .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 4799999999999999999987321 1234555442221110000 0 00000000 11223345566677788
Q ss_pred eEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHH
Q 001955 272 YLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSER 311 (991)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~ 311 (991)
=+|++|.+... +.++.+. .+..+ +..+|+||....
T Consensus 242 ~ilildE~~~~--e~~~~l~-~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFYN-VLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCST--HHHHHHH-HHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCChH--HHHHHHH-HHhcC--CCEEEEEEcccH
Confidence 89999998653 3444333 33322 223666665543
No 405
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.76 E-value=1.1 Score=49.82 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=34.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
.-.++.|.|.+|+||||+|.+++.+....+ ..++|++.. -+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 345899999999999999988886432221 245555443 45556666665543
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.72 E-value=0.091 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 407
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.70 E-value=0.085 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
++++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998863
No 408
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.70 E-value=0.14 Score=51.57 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=30.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccc---cc-cccceEEEEecCCCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDV---KT-HFNLRMWVCVSDIFD 234 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~ 234 (991)
.-.+++|+|++|+|||||++.++..... .. .-..++|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4579999999999999999999752111 11 123467776554333
No 409
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.68 E-value=0.23 Score=54.70 Aligned_cols=88 Identities=11% Similarity=0.202 Sum_probs=50.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccccc--ccceEEEEecCC-CChHHHHHHHHHHccCC-------CCcccCHH----
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTH--FNLRMWVCVSDI-FDVTTIVEKMIRSATNR-------ESEKLDLD---- 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 257 (991)
+-++|.|.+|+|||+|+.+++++....+. =+.++++-+.+. ....++.+++.+.-... ..+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999875333111 134566666554 35566776766531100 01111111
Q ss_pred -HHHHHHHhHhC---CceeEEEeccc
Q 001955 258 -QLQERLRGEID---GKRYLLVLDDV 279 (991)
Q Consensus 258 -~l~~~l~~~L~---~kr~LlVlDdv 279 (991)
...-.+.++++ ++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11122334443 78999999998
No 410
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.68 E-value=0.11 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988864
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.64 E-value=0.13 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 412
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.64 E-value=0.12 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999999999886
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.63 E-value=0.23 Score=56.97 Aligned_cols=116 Identities=13% Similarity=0.027 Sum_probs=58.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccC---------------CCCccc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATN---------------RESEKL 254 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~---------------~~~~~~ 254 (991)
.-.+++|.|.+|+|||||++.++......+ ..++++...+. ...+...+ ..++. ..+...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 346899999999999999999886322111 12345544332 23333222 11110 011112
Q ss_pred CHHHHHH-HHHhHhCCceeEEEeccccccChH-----HHHHHHHHhcC-CCCCcEEEEecCcH
Q 001955 255 DLDQLQE-RLRGEIDGKRYLLVLDDVWNENRD-----KWLELEALLMN-GVSGSKIVVTTRSE 310 (991)
Q Consensus 255 ~~~~l~~-~l~~~L~~kr~LlVlDdv~~~~~~-----~~~~l~~~l~~-~~~gs~iivTTR~~ 310 (991)
...+.++ .+...+..+.=++|+|-+..-+.. ....+...+.. ...|..||+||.+.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3333333 344556677789999955322222 22222222211 12467788887653
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.51 E-value=0.083 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998863
No 415
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.50 E-value=0.39 Score=53.23 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=49.3
Q ss_pred EEEEEEecCCChHHHHH-HHHhCCccccccccc-eEEEEecCCC-ChHHHHHHHHHHccC--------CCCcccCHH---
Q 001955 192 AVIPIVGIGGLGKTAVA-QLVYNDEDVKTHFNL-RMWVCVSDIF-DVTTIVEKMIRSATN--------RESEKLDLD--- 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~--- 257 (991)
+.++|.|.+|+|||+|| ..+.+.. .-+. .+++-+.+.. ++.++.+++.+.=.. ...++....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 5777742 2343 4666666544 455666666542110 111111111
Q ss_pred -HHHHHHHhHh--CCceeEEEecccc
Q 001955 258 -QLQERLRGEI--DGKRYLLVLDDVW 280 (991)
Q Consensus 258 -~l~~~l~~~L--~~kr~LlVlDdv~ 280 (991)
...-.+.+++ +++.+||++||+-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111233333 4789999999983
No 416
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.45 E-value=1.2 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998863
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.35 E-value=0.21 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999888863
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.32 E-value=0.14 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.30 E-value=0.14 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|.|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 420
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.27 E-value=0.14 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|++|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345899999999999999998873
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.26 E-value=0.13 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.25 E-value=0.12 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|+|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 423
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.24 E-value=0.69 Score=51.67 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=35.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHc
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSA 246 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 246 (991)
.-.++.|.|.+|+||||+|..++.+.... .=..++|++.. -+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34589999999999999998888642221 11246676654 45567776665543
No 424
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.23 E-value=1.3 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.-.+++|+|+.|+|||||.+.+.-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999998863
No 425
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.23 E-value=0.13 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 426
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.21 E-value=0.44 Score=52.79 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=53.8
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHH-HHHhCCccccccccc-eEEEEecCCC-ChHHHHHHHHHHccCCC-
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVA-QLVYNDEDVKTHFNL-RMWVCVSDIF-DVTTIVEKMIRSATNRE- 250 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~- 250 (991)
++++.+..-. .-+-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+.+.. +..++.+++.+.-....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3455555322 2346799999999999995 5777742 2343 3666666544 45566666654211110
Q ss_pred ------CcccCHHH-----HHHHHHhHh--CCceeEEEeccc
Q 001955 251 ------SEKLDLDQ-----LQERLRGEI--DGKRYLLVLDDV 279 (991)
Q Consensus 251 ------~~~~~~~~-----l~~~l~~~L--~~kr~LlVlDdv 279 (991)
.+...... ..-.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11111111 111233333 478999999998
No 427
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.20 E-value=0.16 Score=53.35 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.18 E-value=0.15 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.15 E-value=0.14 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 430
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.08 E-value=0.3 Score=63.66 Aligned_cols=84 Identities=18% Similarity=0.095 Sum_probs=53.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
..+++.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.+. ......++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456899999999999999988876322 2213567888777766655 33333110 11223445555555
Q ss_pred hHhC-CceeEEEecccc
Q 001955 265 GEID-GKRYLLVLDDVW 280 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~ 280 (991)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4433 567799999994
No 431
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.04 E-value=0.15 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|.|||||++.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 432
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.02 E-value=0.2 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999888763
No 433
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.00 E-value=0.22 Score=55.00 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=34.7
Q ss_pred CceeecchhHHHHHHHHhCC--------CCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 164 EDIIGRDGDKNEIIDRLLDS--------SESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|.+..++.+...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35788888888877666321 000001234588999999999999999987
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.94 E-value=0.55 Score=45.77 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.|+|=|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999873
No 435
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.93 E-value=0.25 Score=53.47 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 173 KNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+...+.... ....+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 2678999999999999999988875
No 436
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.91 E-value=0.11 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=16.3
Q ss_pred eEEEEEEecCCChHHHHHHHHh-C
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVY-N 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~-~ 213 (991)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.89 E-value=1.5 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=20.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...++|.|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988885
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.86 E-value=0.16 Score=50.88 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 439
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.82 E-value=0.15 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+|.|.|+||+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 440
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.78 E-value=1.5 Score=50.83 Aligned_cols=125 Identities=8% Similarity=0.050 Sum_probs=64.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccc-cc-cc--ceEEEEec--CCC--ChH--------------HHHHHHHHHccCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVK-TH-FN--LRMWVCVS--DIF--DVT--------------TIVEKMIRSATNR 249 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~-F~--~~~wv~~s--~~~--~~~--------------~~~~~i~~~l~~~ 249 (991)
.+++|+|+.|+|||||++.++--.... +. .. .+.++.-. ..+ +.. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 479999999999999999998642211 11 00 12222110 000 111 2223334443321
Q ss_pred C-----C-cccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHh
Q 001955 250 E-----S-EKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 250 ~-----~-~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~ 316 (991)
. . ....-+.-.-.|...|..++=+++||.--.. |...-..+...+..- ..|..||++|.+.+.+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1 1 1112233334566778888889999985322 323333333333221 2366788888887766554
No 441
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.74 E-value=0.19 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999973
No 442
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.71 E-value=0.16 Score=48.41 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...++.|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998863
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.59 E-value=2 Score=49.79 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=66.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCCccc-ccc--cc-ceEEEEecC----CCChHHHH--------------HHHHHHccCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDV-KTH--FN-LRMWVCVSD----IFDVTTIV--------------EKMIRSATNR 249 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-~~~wv~~s~----~~~~~~~~--------------~~i~~~l~~~ 249 (991)
.+++|+|+.|+|||||++.++-.... .+. +. .+.|+.-.. ..++.+.+ .++++.++..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 48999999999999999999974221 111 11 233432111 12232222 2223333321
Q ss_pred C-----Ccc-cCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCC--CCCcEEEEecCcHHHHHHhC
Q 001955 250 E-----SEK-LDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNG--VSGSKIVVTTRSERVARITS 317 (991)
Q Consensus 250 ~-----~~~-~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTTR~~~v~~~~~ 317 (991)
. ... ..-+...-.|...|...+=+++||.--.. |...-..+...+..- ..|..||++|.+...+..+.
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a 539 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 539 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 1 111 11223333456667778889999985332 333333344433321 23667888888877665543
No 444
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.47 E-value=2.1 Score=51.28 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=23.1
Q ss_pred hHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHh
Q 001955 172 DKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVY 212 (991)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 212 (991)
..+.+...+.. -.++.|+|+.|.||||++..+.
T Consensus 98 q~~~i~~~l~~--------~~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQN--------NQIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhC--------CCeEEEECCCCCCHHHHHHHHH
Confidence 34555555542 2478999999999999665554
No 445
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.43 E-value=0.17 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|.|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999986
No 446
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.41 E-value=0.13 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998853
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.41 E-value=0.22 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHhC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999998874
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.38 E-value=0.19 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 449
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.30 E-value=0.18 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.+.--
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.29 E-value=0.17 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|++|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 451
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.21 E-value=0.19 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.19 E-value=0.16 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 453
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.12 E-value=0.2 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.11 E-value=0.26 Score=57.59 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=35.9
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCC
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35889988888888777643 37899999999999999999974
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.09 E-value=0.2 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.07 E-value=0.19 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999999863
No 457
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.05 E-value=0.19 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 458
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.03 E-value=0.24 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998864
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.03 E-value=0.19 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999863
No 460
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.98 E-value=0.22 Score=53.49 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998863
No 461
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.96 E-value=0.23 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.++|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 462
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.92 E-value=0.21 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.+++|+|+.|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999997
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.92 E-value=3 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-.+++|+|+.|+|||||.+.+.--
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 348999999999999999998853
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.85 E-value=0.2 Score=50.89 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.82 E-value=0.2 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 466
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.74 E-value=2.8 Score=50.95 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=64.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCCcccccccc---ceEEEEecCC-------CCh-----------HHHHHHHHHHccCCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYNDEDVKTHFN---LRMWVCVSDI-------FDV-----------TTIVEKMIRSATNRE 250 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~-------~~~-----------~~~~~~i~~~l~~~~ 250 (991)
.+++|+|+.|.|||||++.+..- .+. .++ ..-.+.+.+. .+. .+-..++++.++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 47999999999999999999831 110 010 0001122211 111 122344555554310
Q ss_pred ------C-cccCHHHHHHHHHhHhCCceeEEEecccccc-ChHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHh
Q 001955 251 ------S-EKLDLDQLQERLRGEIDGKRYLLVLDDVWNE-NRDKWLELEALLMNGVSGSKIVVTTRSERVARIT 316 (991)
Q Consensus 251 ------~-~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~~~~ 316 (991)
. ....-+...-.|...|..++=+|+||.--.. |...-..+...+.. .|..||++|.+.......
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 1 1111222233445556667789999985332 33444445555554 467888888887666543
No 467
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.67 E-value=0.22 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999973
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.64 E-value=0.094 Score=54.87 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999886
No 469
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.61 E-value=0.41 Score=53.08 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=48.0
Q ss_pred EEEEEEecCCChHHHHH-HHHhCCccccccccc-eEEEEecCCC-ChHHHHHHHHHHcc--------CCCCccc----C-
Q 001955 192 AVIPIVGIGGLGKTAVA-QLVYNDEDVKTHFNL-RMWVCVSDIF-DVTTIVEKMIRSAT--------NRESEKL----D- 255 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~--------~~~~~~~----~- 255 (991)
+-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+.+.. +..++.+++.+.-. ....++. -
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45799999999999995 6787742 2343 4666666543 34455555543210 0001110 0
Q ss_pred ---HHHHHHHHHhHhCCceeEEEecccc
Q 001955 256 ---LDQLQERLRGEIDGKRYLLVLDDVW 280 (991)
Q Consensus 256 ---~~~l~~~l~~~L~~kr~LlVlDdv~ 280 (991)
.-.+.++++. +++.+||++||+-
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1122333443 4899999999993
No 470
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.55 E-value=0.24 Score=48.08 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..-.|+|+|.+|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999998864
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.54 E-value=0.29 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 472
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.54 E-value=0.22 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 473
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.52 E-value=0.36 Score=48.44 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
....|.|.|++|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 474
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.49 E-value=0.22 Score=51.43 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 475
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.48 E-value=0.22 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999864
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.47 E-value=0.27 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 477
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.40 E-value=0.26 Score=50.52 Aligned_cols=110 Identities=9% Similarity=0.175 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHHHH--HccCCCCcccCHHHHHHHHHhH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKMIR--SATNRESEKLDLDQLQERLRGE 266 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~l~~~l~~~ 266 (991)
.-.+++|+|+.|+||||+++.+... ....+.+.+++.-... +-.... ..+.. .++. +. ..+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 3469999999999999999988863 1111233443321110 000000 00000 0000 01 1234455566
Q ss_pred hCCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcHHHH
Q 001955 267 IDGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSERVA 313 (991)
Q Consensus 267 L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~~v~ 313 (991)
|..++=+|++|..-+. +....+.... ..|..|++||-+..+.
T Consensus 95 L~~~p~illlDEp~D~--~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCCCH--HHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 6556778899998632 3333332222 2466788888765543
No 478
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.38 E-value=0.4 Score=52.05 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=66.3
Q ss_pred CceeecchhHHHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHH-HH
Q 001955 164 EDIIGRDGDKNEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVE-KM 242 (991)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~-~i 242 (991)
..++|....+.++...+..... ....|.|+|.+|+||+++|+.+.....-.. .-+-++++.. ....+. .+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~--~~~~~~~~l 199 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASI--PQELAESEL 199 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSS--CTTTHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccC--ChHHHHHHh
Confidence 3477877766666655532211 112367999999999999999986322111 1222333322 122222 22
Q ss_pred HHHccCCCCcc-cCHHHHHHHHHhHhCCceeEEEeccccccChHHHHHHHHHhcCCC-----------CCcEEEEecCc
Q 001955 243 IRSATNRESEK-LDLDQLQERLRGEIDGKRYLLVLDDVWNENRDKWLELEALLMNGV-----------SGSKIVVTTRS 309 (991)
Q Consensus 243 ~~~l~~~~~~~-~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTTR~ 309 (991)
...-.+..... ..... .+.. ...-.|+||++.+-.......+...+..+. ...|||.||..
T Consensus 200 fg~~~g~~tga~~~~~g---~~~~---a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 200 FGHEKGAFTGALTRKKG---KLEL---ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp HEECSCSSSSCCCCEEC---HHHH---TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred cCccccccCCcccccCC---hHhh---cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 11111110000 00000 1111 122358999998877767777777765431 13467776653
No 479
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.29 E-value=0.69 Score=51.10 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=49.0
Q ss_pred EEEEEEecCCChHHHHH-HHHhCCccccccccc-eEEEEecCCC-ChHHHHHHHHHHccCC--------CCcccCHH---
Q 001955 192 AVIPIVGIGGLGKTAVA-QLVYNDEDVKTHFNL-RMWVCVSDIF-DVTTIVEKMIRSATNR--------ESEKLDLD--- 257 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~--- 257 (991)
+.++|.|..|+|||+|| ..+.+. .+-+. ++++-+.+.. +..++.+++.+.=... ..++....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 46799999999999996 577763 22333 4677777654 4556666654431111 01111111
Q ss_pred -----HHHHHHHhHhCCceeEEEecccc
Q 001955 258 -----QLQERLRGEIDGKRYLLVLDDVW 280 (991)
Q Consensus 258 -----~l~~~l~~~L~~kr~LlVlDdv~ 280 (991)
.+.+++++ +++.+||++||+-
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 12233332 4899999999993
No 480
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.28 E-value=0.67 Score=45.29 Aligned_cols=110 Identities=11% Similarity=-0.027 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCCC--cccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRES--EKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~L 267 (991)
.-.+..++|..|.||||.|.........+ .. .++.+..... .+.-...+.+.++.... ...+.+ .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~-kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQ-HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TC-CEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 34688899999999999886666532222 22 2333332211 11111223333321110 111111 222333
Q ss_pred CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 268 DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 268 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
.++--+|++|.+.--+.+..+.+....+ .|-.||+|-++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 3333499999997654444544443333 366899998863
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.27 E-value=0.23 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++--
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.25 E-value=0.23 Score=47.87 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhCC
Q 001955 193 VIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 193 vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 483
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.25 E-value=1.1 Score=50.30 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCC-CChHHHHHHH
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDI-FDVTTIVEKM 242 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i 242 (991)
++++.|..-. +-+.++|.|..|+|||+|+.++.+. .+-+.++++-+.+. .+..++++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566666432 3357899999999999999999873 12356777777655 3444555443
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.20 E-value=0.23 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.16 E-value=0.26 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999873
No 486
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.12 E-value=0.26 Score=47.75 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC--CcccCHHHHHHHHHhHh
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE--SEKLDLDQLQERLRGEI 267 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~l~~~l~~~L 267 (991)
.-++..++|..|.||||.+..+.+.... ......+ +..... .+.-...+...++... ....+.++ +.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v-~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~~----i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQV-FKPEID--NRYSKEDVVSHMGEKEQAVAIKNSRE----ILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EEEC---------CEEECTTSCEEECEEESSSTH----HHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEeccC--ccchHHHHHhhcCCceeeEeeCCHHH----HHHHH
Confidence 3468999999999999988776653221 2222222 221111 0100011222222110 00111122 33333
Q ss_pred CCceeEEEeccccccChHHHHHHHHHhcCCCCCcEEEEecCcH
Q 001955 268 DGKRYLLVLDDVWNENRDKWLELEALLMNGVSGSKIVVTTRSE 310 (991)
Q Consensus 268 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTTR~~ 310 (991)
.++-=+|++|.+.--+.+..+.+....+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 3333489999986544344444444333 267899998853
No 487
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.09 E-value=0.24 Score=51.74 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999999886
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.08 E-value=0.24 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.95 E-value=0.26 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.++.|+|.+|+||||||..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999988875
No 490
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.91 E-value=0.27 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
.-.+|+|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999886
No 491
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.83 E-value=0.41 Score=48.66 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhC
Q 001955 174 NEIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
..+..++.... +...-|.++|++|.|||++|..+++
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34566665421 2345699999999999999999987
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.80 E-value=0.25 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHhC
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999986
No 493
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.67 E-value=0.65 Score=51.58 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=55.0
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHH-HHHhCCccc----ccccc-ceEEEEecCCC-ChHHHHHHHHHHcc
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVA-QLVYNDEDV----KTHFN-LRMWVCVSDIF-DVTTIVEKMIRSAT 247 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~ 247 (991)
++++.+..-. .-+-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+.. +..++.+++.+.-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3455555432 2346799999999999995 566664221 01234 35677776544 45566666654211
Q ss_pred C--------CCCcccCHH----HHHHHHHhHh--CCceeEEEecccc
Q 001955 248 N--------RESEKLDLD----QLQERLRGEI--DGKRYLLVLDDVW 280 (991)
Q Consensus 248 ~--------~~~~~~~~~----~l~~~l~~~L--~~kr~LlVlDdv~ 280 (991)
. ...++.... ...-.+.+++ +++.+||++||+-
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0 011111111 1111233333 4789999999983
No 494
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.67 E-value=0.51 Score=49.83 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=29.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC
Q 001955 189 ESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD 234 (991)
Q Consensus 189 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 234 (991)
...++|+|+|-||+||||+|..++.. ....=..++-|+.....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 36789999999999999999877753 222112466676654433
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.55 E-value=0.29 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHhC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYN 213 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~ 213 (991)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 496
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.40 E-value=0.27 Score=48.02 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 497
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.25 E-value=0.95 Score=59.11 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=55.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCChHHHHHHHHHHccCCC-----CcccCHHHHHHHHH
Q 001955 190 SVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFDVTTIVEKMIRSATNRE-----SEKLDLDQLQERLR 264 (991)
Q Consensus 190 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 264 (991)
.-+++.|+|.+|+||||||.+++.... ..=..++|++.....+... ++.++... .+..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 446999999999999999988886422 2223578888777666432 44444221 12345666666665
Q ss_pred hHhC-CceeEEEeccccc
Q 001955 265 GEID-GKRYLLVLDDVWN 281 (991)
Q Consensus 265 ~~L~-~kr~LlVlDdv~~ 281 (991)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 4432 4566999999854
No 498
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.20 E-value=2.1 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhCC
Q 001955 192 AVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 192 ~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
.+++|+|+.|.|||||++.+..-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988863
No 499
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.16 E-value=0.84 Score=51.00 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCCCCCceEEEEEEecCCChHHHHHHHHhCCccccccccceEEEEecCCCC-hHHHHHHH
Q 001955 175 EIIDRLLDSSESEIESVAVIPIVGIGGLGKTAVAQLVYNDEDVKTHFNLRMWVCVSDIFD-VTTIVEKM 242 (991)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 242 (991)
++++.|..-. +-+.++|.|..|+|||+|++.+.+. .+-+.++++-+.+... ..++++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665422 3357899999999999999998763 2235677887776554 45555554
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.15 E-value=0.75 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHhCC
Q 001955 191 VAVIPIVGIGGLGKTAVAQLVYND 214 (991)
Q Consensus 191 ~~vi~I~G~~GiGKTtLa~~v~~~ 214 (991)
-..|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
Done!