BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001957
(991 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 870 EMKVQGVLED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT- 924
E+K++ +++ LN ++ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 925 GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETRKVG 982
++ P K R G QN P +T+Y+++ F LR +P E+D + R+V
Sbjct: 63 DEKDVTELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 54/272 (19%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFV 223
+ T L +++ IK G LLGP PT SG + ++ D+ E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELP 71
Query: 224 PQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P+ R + Q+ MTV + +AF + P +ID
Sbjct: 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA--------------------PREEID 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ +A K+L +D + +SGGQ++RV +V
Sbjct: 112 KKVREVA--------------KMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD+ ++ L++ + G + + E + D I ++ +G+
Sbjct: 153 EVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTHDQAEALAMADRIAVIREGE 211
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
I+ G P E+ + PK K V FL
Sbjct: 212 ILQVGTPDEV---------YYKPKYKFVGGFL 234
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG---ISGGQKKRVTTGE 336
++ V M + +EA +Y L LGL GD++ R +SGG+++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ + LF DE + LDS+ T ++++ + IN G I ++ E +L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTL 210
Query: 397 LLSDGQIV 404
+ DG++V
Sbjct: 211 EMKDGKVV 218
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915
+L G+S + + G +++G SG+GK+TL+ +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG 51
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 130 NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 185 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 136 NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 191 ICKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 57/254 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKDV+ + G++ +++G L +G + +G D F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG----LLAAAGEIFLDGSPADPFLLRK 81
Query: 227 TAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ Q+ + I TV E +AFS G+ +E+ +R K
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKKV------------ 124
Query: 286 KAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
L+++GL AD + +SGGQK+R+ M+
Sbjct: 125 -----------------LELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTR 160
Query: 344 ALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L +DE + LD + FQ++ L+ N G +I L+ E D D I+ +S+
Sbjct: 161 FLALDEPVSMLDPPSQREIFQVLESLK-----NEGKGII-LVTHELEYLDDMDFILHISN 214
Query: 401 GQIVYQGPRELVLE 414
G I + G E +E
Sbjct: 215 GTIDFCGSWEEFVE 228
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 943 SGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKVGTKSPRVLG 990
GY QN T+ E + FS L + +SE RK K ++G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVG 129
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 186
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 187 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKV 981
R G QN P +T++E++ F R + + E R V
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 101/277 (36%), Gaps = 57/277 (20%)
Query: 162 KRHLTILKDVSGV---IKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHD 218
K++ +K V GV +K G LLGP PT SG + ++
Sbjct: 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVL 66
Query: 219 MDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+++ P+ R + Q+ MTV E +AF R ARR
Sbjct: 67 VNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR--------------ARR-------- 104
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
I+ + E V+ + + D ++ D +SGGQ++RV
Sbjct: 105 ----------ISKDEVEKRVVE------IARKLLIDNLL-DRKPTQLSGGQQQRVALARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L DE + LD++ I+ +++ G + + E + I +
Sbjct: 148 LVKQPKVLLFDEPLSNLDANLRM-IMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206
Query: 398 LSDGQIV-YQGPRELVLEFFASMGFRCPKRKGVADFL 433
+ G++V Y P E+ + PK VA F+
Sbjct: 207 FNQGKLVQYGTPDEV---------YDSPKNMFVASFI 234
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 130 NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 184
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 185 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L DE ++ LD ++ + + +N+H
Sbjct: 136 NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALD----YESEHVIMRNMHK 190
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 41/202 (20%)
Query: 209 SGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265
SG++ +GHD+ ++ +R A +SQ + H+ T+ +A++A +G TR E + +
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAA--EGEYTR-EQIEQ 452
Query: 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325
AR+ A M+ I Q GLD T++G+ +S
Sbjct: 453 AARQAHA------------MEFIENMPQ-------------GLD----TVIGENGT-SLS 482
Query: 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385
GGQ++RV ++ A L +DE ++ LD+ + I L + + N VI+
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQKNKTVLVIA---HR 538
Query: 386 PETYDLFDDIILLSDGQIVYQG 407
T + D+I+++ +G+I+ +G
Sbjct: 539 LSTIEQADEILVVDEGEIIERG 560
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVP-- 224
I +D S I G +T L+GP DP SGT++ +GHD+ + P
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVW 415
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R+ + + ++ E +A+ A DP
Sbjct: 416 LRSKIGTVSQEPILFSCSIAENIAYGA-------------------------DDPS---- 446
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A E Q + + + +T+VG++ + +SGGQK+R+ ++
Sbjct: 447 -SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKI 504
Query: 345 LFMDEISTGLDSSTTFQIVNCL 366
L +DE ++ LD+ + + L
Sbjct: 505 LLLDEATSALDAENEYLVQEAL 526
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371
+T+VG++ G+SGGQ++R+ +V L D+ ++ LD ++ + + +N+H
Sbjct: 136 NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALD----YESEHVIMRNMHK 190
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP-RELVLE 414
I G VI ++ T D II++ G+IV QG +EL+ E
Sbjct: 191 ICKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 36/207 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDE 221
+ + I +D S I G +T L+GP DP SGT++ +GHD+ +
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQ 441
Query: 222 FVP--QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
P R+ + + ++ E +A+ A DP
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD-------------------------DP 476
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
A E Q + + + +T+VG++ + +SGGQK+R+ ++
Sbjct: 477 S-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALL 530
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCL 366
L +DE ++ LD+ + + L
Sbjct: 531 KNPKILLLDEATSALDAENEYLVQEAL 557
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF---QIVNCLRQN 369
DT+VG++ ++ +SGG+++R+ ++ + DE ++ LDS T + + V LR+N
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
+ ++ T + IILL+ G+IV +G + +L+
Sbjct: 205 -------RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 367
+D DT++G+ + +SGGQ++R+ ++ + L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 368 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ + N + VI+ T + D+I+++ DG IV +G +LE
Sbjct: 525 E-LQKNRTSLVIA---HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGGQK+RV + L DE ++ LD +TT I+ L+ +I+ G ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLTILLITH 199
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
+ D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 242
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 376
D + +SGGQ++RV G +V +DE + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 939
+LN +S + PG + ++G SG GKTTL+ LAG + +G I++SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 940 ARIS--GYCEQNDIHSPFVTIYESLLF 964
R GY Q + P +T+Y ++ +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAY 103
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 376
D + +SGGQ++RV G +V +DE + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 939
+ GVS R G + L+G SG+GKTT++ ++AG R T G +I G P+K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETRKV 981
R G QN +T+Y+++ F + P E+D+ R++
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL 129
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 47/260 (18%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYN 215
+I P R + + VS I+ G + LLGP PT G V
Sbjct: 22 KIYPGGARSV---RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIG 75
Query: 216 GHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
G + + PQ R + Q+ MTV + ++F R + V
Sbjct: 76 GKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV------------------ 117
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
P ++D ++ + L+ + L+ A+ + +SGGQ++RV
Sbjct: 118 --PKDEMDARVREL--------------LRFMRLESYANRFPHE-----LSGGQQQRVAL 156
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+ L DE +D+ ++ +RQ +H G + + E ++ D
Sbjct: 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADR 215
Query: 395 IILLSDGQIVYQGPRELVLE 414
+++L +G + G E V E
Sbjct: 216 VLVLHEGNVEQFGTPEEVYE 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D +SGGQK+RV + L D+ ++ LD +TT I+ L+ +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++ + + D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 265
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
R SGGQK+R++ +V L +D+ ++ +D T +I++ L++ G +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR---YTKGCTTFII 534
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
Q P T L D I++L +G++ G + +LE
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLE 566
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 27/32 (84%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+L+GV+ + +PG L A++G +G+GK+TLM+++
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 44/249 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFV--P 224
ILKD++ I+ G +G D T SG + +GH++ +F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 412
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q DN + TV+E + +P
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLG-------------------------RP------- 440
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A E EA + + + ++ L DT VG+ ++ +SGGQK+R++ + +
Sbjct: 441 -TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPI 498
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++ LD + + +++ + + S ++ T D I+++ +G IV
Sbjct: 499 LILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554
Query: 405 YQGP-RELV 412
G REL+
Sbjct: 555 ETGTHRELI 563
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++Q V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 931 GYPKKQETFARIS---GYCEQNDIHSPFVT 957
G P + + +++ Y Q PF T
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT 88
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR 367
+D DT++G+ + +SGGQ++R+ ++ + L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 368 QNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ + N + VI+ T + D+I+++ DG IV +G +L
Sbjct: 525 E-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGT 376
D + +SGGQ++RV G +V +D+ + LD++ Q+ + R +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR--LHKRLGR 185
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGGQK+RV + L D+ ++ LD +TT I+ L+ +I+ G ++ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLITH 222
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
+ D + ++S+G+++ Q + V E F+ PK F+Q
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 265
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++Q V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 931 GYPKKQETFARIS---GYCEQNDIHSPFVT 957
G P + + +++ Y Q PF T
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT 88
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI 923
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG +
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 46/253 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQR 226
+L+ ++ ++PG +T L+GP PT G + +G + PQ
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL----PQY 84
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Y+ + + VG ++ + A G+ P ++
Sbjct: 85 EHRYLHR------------------QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A G + + GL DT V DE +SGGQ++ V ++ L
Sbjct: 127 AAVKSGAHSFIS--------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLI 177
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAV-----ISLLQPAPETYDLFDDIILLSDG 401
+D+ ++ LD+++ Q+ L ++ S + + +SL++ A D I+ L G
Sbjct: 178 LDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGG 230
Query: 402 QIVYQGPRELVLE 414
I G + ++E
Sbjct: 231 AIREGGTHQQLME 243
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+++L G++ RPG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQ 83
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI 923
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ TGG +
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 79
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD-- 912
S+ + SVD ++ V G E L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 913 ---VLAGRKTG 920
VLA R G
Sbjct: 689 LAAVLANRLNG 699
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D+ +S GQKKRV ++V L +DE + GLD +I+ L + + G
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGIT 196
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQ 434
+I D++ ++ +G+++ QG P+E+ E + R P+ + + L+
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILK 256
Query: 435 E 435
E
Sbjct: 257 E 257
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
G SGG+KKR +++V +DE +GLD + + N G VI+
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 427
Q Y D + ++ DG++V G EL LE A G+ K K
Sbjct: 202 YQRIL-NYIQPDKVHVMMDGRVVATGGPELALELEAK-GYEWLKEK 245
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK++G A +G +S G+K+RV + G L +DE + GLD +
Sbjct: 146 LKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++ L A I + E F I+LL DGQ + QG E +L
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXX 191
L N L ++F +F NY P++ + +L+ +S +K G+ L+G
Sbjct: 1022 LKPNMLEGNVQFSGVVF----NY----PTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 192 XXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIGEMTVRETLAF 249
DP ++G+V +G ++ + Q R I + + + ++ E +A+
Sbjct: 1073 STVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
G +R E+ R K A I Q + + D Y
Sbjct: 1130 -----GDNSRVVSYEEIVRAAKEANIH----------------QFIDSLPDKY------- 1161
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 358
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 ---NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGGQK+R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXX 191
L N L ++F +F NY P++ + +L+ +S +K G+ L+G
Sbjct: 1022 LKPNMLEGNVQFSGVVF----NY----PTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 192 XXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIGEMTVRETLAF 249
DP ++G+V +G ++ + Q R I + + + ++ E +A+
Sbjct: 1073 STVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
G +R E+ R K A I Q + + D Y
Sbjct: 1130 -----GDNSRVVSYEEIVRAAKEANIH----------------QFIDSLPDKY------- 1161
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSST 358
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ +
Sbjct: 1162 ---NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 43/248 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRT 227
L+DVS + PG+ L+GP D + SG + +G D + Q T
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQD----ISQVT 122
Query: 228 AAYISQHDNHIGEMTV--RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A + H + + TV +T+A + R V + E+ +AAGI
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND---EVEAAAQAAGI---------- 169
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
+ ++ T VG+ ++ +SGG+K+RV ++ +
Sbjct: 170 ----------------HDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGII 212
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
+DE ++ LD+S I L + + N T V++ T D I+++ DG IV
Sbjct: 213 LLDEATSALDTSNERAIQASLAK-VCANRTTIVVA---HRLSTVVNADQILVIKDGCIVE 268
Query: 406 QGPRELVL 413
+G E +L
Sbjct: 269 RGRHEALL 276
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 944 ---GYCEQNDIHSPFVT 957
Y Q PF T
Sbjct: 73 LHRAYLSQQQT-PPFAT 88
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L +SG R G + L+G +GAGK+TL+ AG +G G+I +G P + + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 944 ---GYCEQNDIHSPFVT 957
Y Q PF T
Sbjct: 73 LHRAYLSQQQT-PPFAT 88
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE-----FFAS 418
+ D +++L G+ V+ G R LE FF S
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 236
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGG+K+RV ++V L +DE GLD ++ + + + G VI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE-----FFAS 418
+ D +++L G+ V+ G R LE FF S
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 238
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISG-----YPKKQE 937
+S + G L+G SG GKTT + +AG T G YI N+ P K+
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETRKVG 982
A + Q+ P T+Y+++ F LR P E+D R+V
Sbjct: 85 DVAXVF----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVA 127
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETR 979
+ Q+ P +T+YE++ F ++ P E+D R
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 123
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVIS 380
+SGGQ++RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 197
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 413
+ E + D I +++ GQ++ G P E+ L
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 36/248 (14%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQR 226
+L+ ++ + PG++T L+GP PT G V +G +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL------- 83
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Q+D+H + VG + R A G+ P ++ +
Sbjct: 84 -----VQYDHHY----------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME-EIT 127
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A+A E + I+ G DT VG E +SGGQ++ V ++ L
Sbjct: 128 AVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D+ ++ LD+ ++ L ++ S T ++ Q + + I+ L +G + Q
Sbjct: 180 LDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSVCEQ 237
Query: 407 GPRELVLE 414
G ++E
Sbjct: 238 GTHLQLME 245
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 923
+L G++ PG +TAL+G +G+GK+T+ +L + TGG +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+N ++ + G L+G SG GKTT + ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETR 979
+ Q+ P +T+YE++ F ++ P E+D R
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 124
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVIS 380
+SGGQ++RV +V L MDE + LD+ + + L+Q + + + I
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT----IY 198
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVL 413
+ E + D I +++ GQ++ G P E+ L
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGG+++RV +V L +DE + LD T L +H + V+ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITH 186
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
E + D I ++ DG+++ G E + E
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 95/251 (37%), Gaps = 36/251 (14%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFV 223
++ +L+ ++ + PG++T L+GP PT G V +G +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL---- 83
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Q+D+H + VG + R A G+ P ++
Sbjct: 84 --------VQYDHHY----------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME- 124
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ A+A E + I+ G DT VG E +SGGQ++ V ++
Sbjct: 125 EITAVAMESGAHDFIS-------GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +D ++ LD+ ++ L ++ S T ++ Q + + I+ L +G +
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSV 234
Query: 404 VYQGPRELVLE 414
QG ++E
Sbjct: 235 CEQGTHLQLME 245
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 923
+L G++ PG +TAL+G +G+GK+T+ +L + TGG +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 101/261 (38%), Gaps = 45/261 (17%)
Query: 151 ILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSG 210
I +R ++ + ILK +S ++PG+ L+GP D + G
Sbjct: 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGG 1134
Query: 211 TVTYNGHDMDEFVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ +G ++ P+ T + I+ + + + ++ E + +
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY------------------- 1175
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISG 326
G+ P V M + +EA + + + + L +T VGD RG +SG
Sbjct: 1176 -----GLDPS---SVTMAQV----EEAARLANIHNFIAELPEGFETRVGD---RGTQLSG 1220
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386
GQK+R+ +V L +DE ++ LD+ + + L + + + L
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM 1280
Query: 387 ETYDLFDDIILLSDGQIVYQG 407
D I ++S+G I+ +G
Sbjct: 1281 NA----DCIAVVSNGTIIEKG 1297
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 42/162 (25%)
Query: 313 DTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370
+T+VGD RG +SGGQK+R+ +V L +DE ++ LD+ + + L +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 430
T +I+ DL II +GQ+V G
Sbjct: 602 K-GRTTIIIAHRLSTIRNADL---IISCKNGQVVEVG----------------------- 634
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQ 472
D R A + Y VT Q F +A S G+
Sbjct: 635 ----------DHRALMAQQGLYYDLVTAQTFTDAVDSAAEGK 666
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+L G+S + PG AL+G SG GK+T++ +L
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 913
L D + P K QG +LN G F + +MG +G GKTTL+ +
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDF-----VLNVEEGEFSDSEILVMMGENGTGKTTLIKL 397
Query: 914 LAG--RKTGGYITGNITISGYPKK 935
LAG + G + +S P+K
Sbjct: 398 LAGALKPDEGQDIPKLNVSMKPQK 421
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918
RPG + L+G +G GK+T + +LAG++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D+ ++ +SGG+ +RV + PA +DE S LDS +R+ I N TA
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQG 407
I TY L+D IV++G
Sbjct: 522 FIVEHDFIMATY--------LADKVIVFEG 543
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 324 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ ++Q N G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 195
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D + +SGG+ +RV ++ A F DE S+ LD ++ +R+ N G A
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR--LANEGKA 280
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPK--RKGVADFLQ 434
V+ +++ D D+I +VY P V F+ PK R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVI-----HVVYGEPG--VYGIFSK-----PKGTRNGINEFLQ 326
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 851 FEPHSLTFDEVVYSVDMPEEMKVQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907
F P+ + F ++ VD+ E V+ V + L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 908 TTLMDVLAG--RKTGGYITGNITISGYPK 934
TT + +LAG T G + ++T++ P+
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ 424
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D + +SGG+ +RV ++ A +DE S LD + +R + N TA
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 378 VISLLQPAPETYDLFDDIILL---SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++ + D++++ SD IV++G MG R+G+ FL
Sbjct: 526 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 570
Query: 435 EV--TSRKD 441
V T R+D
Sbjct: 571 SVGITFRRD 579
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 324 ISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ ++Q N G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 216
Query: 383 QPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D + +SGG+ +RV ++ A F DE S+ LD ++ +R+ N G A
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR--LANEGKA 266
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPK--RKGVADFLQ 434
V+ +++ D D+I +VY P V F+ PK R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVI-----HVVYGEPG--VYGIFSK-----PKGTRNGINEFLQ 312
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 851 FEPHSLTFDEVVYSVDMPEEMKVQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907
F P+ + F ++ VD+ E V+ V + L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 908 TTLMDVLAG--RKTGGYITGNITISGYPK 934
TT + +LAG T G + ++T++ P+
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ 410
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377
D + +SGG+ +RV ++ A +DE S LD + +R + N TA
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 378 VISLLQPAPETYDLFDDIILL---SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++ + D++++ SD IV++G MG R+G+ FL
Sbjct: 512 LV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM----REGMNRFLA 556
Query: 435 EV--TSRKD 441
V T R+D
Sbjct: 557 SVGITFRRD 565
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
L+GVS + G +T ++G +G+GK+TL++V+ G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
L+GVS + G +T ++G +G+GK+TL++V+ G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG------YPKKQETFARISG 944
G L+G SG GKTT + ++AG + G G+ ++ P K A +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVF- 87
Query: 945 YCEQNDIHSPFVTIYESLLFSAWLRLSP--EVDSETRKV 981
Q+ P +T+Y+++ F LR P E+D R+V
Sbjct: 88 ---QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
R +SGGQ++RV G +V MDE + LD+ ++ L++ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYV 196
Query: 382 LQPAPETYDLFDDIILLSDG 401
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
L+N VS G + A++G +GAGK+TL+ +L G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 950
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 951 IHSPFVTIYESLLFSAWLRLSPE 973
I P +T+YE+L A+ R E
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKE 113
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
L+GVS + G +T ++G +G+GK+TL++V+ G
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITG 55
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 322 RGISGGQKKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375
RG+SGG++ ++ E+ G A F+DE + LD+ +I + L++ +N
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
VI + E + FD + ++ G +V +
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
K+V L+ V+ G ++G SGAGKTT M ++AG
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
K+V L+ V+ G ++G SGAGKTT M ++AG
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
R +SGGQ++RV +V L +DE + LD+ L + + G ++ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVV 197
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRE 410
+ + + D + +L G++V G E
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 849 LPFEPHSLTFDEVVY----------SVDMPEEMKVQGVLED----KLVLLNGVSGAFRPG 894
LP E + DE+ + S D+ +MK +++ +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 895 VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQETFARISGYCEQ 948
+ ++G +G GKTT +L G T G +T I Y K Q F G +Q
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQ 349
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 322 RGISGGQKKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375
RG+SGG++ ++ E+ G A F+DE + LD+ +I + L++ +N
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK- 336
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
VI + E + FD + ++ G +V +
Sbjct: 337 --VIVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 39 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQK-KRVTTGEMMVGPALALFMDEISTGLDSST 358
+ + +LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 881 EEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 936
Query: 359 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ L++ G +I+ A T +L +++ + DG++ G
Sbjct: 937 LGALSKALKE---FEGGVIIIT--HSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGGQ++RV + + DE + LDS T +I L++ + T V+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVV--- 202
Query: 384 PAPETYDLF-----DDIILLSDGQI 403
T+D+ + II L DG++
Sbjct: 203 ----THDINVARFGERIIYLKDGEV 223
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 923
+L G++ PG +TAL+G +G+GK+T+ +L + TGG +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGGQ++RV+ + L DE ++ LD +++ ++Q G ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL--AEEGKTMVVVTH 211
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELV 412
+ +I L G+I +G E V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 918
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
+SGG+++RV +V L +DE + +D T ++ LR + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
E L D++ ++ +G+IV +G + E F++ K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLK---ELFSA------KNGEVAEFL 226
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQK-KRVTTGEMMVGPALALFMDEISTGLDSST 358
+ + LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 881 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 936
Query: 359 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ L++ G +I+ A T +L +++ + DG+ G
Sbjct: 937 LGALSKALKE---FEGGVIIIT--HSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 275 IKPDPDIDVY--MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
IK D + VY + I +N LK LG+ D V + +SGG+ +RV
Sbjct: 356 IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE-----LSGGELQRV 410
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
++ A +DE S LD + +R N TA++
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQK-KRVTTGEMMVGPALALFMDEISTGLDSST 358
+ + LGLD +V IRG+SGGQK K V P L + +DE + LD +
Sbjct: 875 EEHCSXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL-IVLDEPTNYLDRDS 930
Query: 359 TFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ L++ G +I+ A T +L +++ + DG+ G
Sbjct: 931 LGALSKALKE---FEGGVIIIT--HSAEFTKNLTEEVWAVKDGRXTPSG 974
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,331,263
Number of Sequences: 62578
Number of extensions: 1026775
Number of successful extensions: 2550
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 192
length of query: 991
length of database: 14,973,337
effective HSP length: 108
effective length of query: 883
effective length of database: 8,214,913
effective search space: 7253768179
effective search space used: 7253768179
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)