Query 001957
Match_columns 991
No_of_seqs 664 out of 3672
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 2E-184 4E-189 1658.3 63.2 877 36-986 12-909 (1391)
2 PLN03140 ABC transporter G fam 100.0 6E-166 1E-170 1596.5 84.5 965 18-986 18-998 (1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 3E-125 6E-130 1224.1 80.0 830 94-986 3-881 (1394)
4 KOG0061 Transporter, ABC super 100.0 1.7E-92 3.8E-97 850.2 56.2 584 114-775 21-608 (613)
5 PLN03211 ABC transporter G-25; 100.0 3.4E-91 7.3E-96 847.4 62.3 609 114-775 35-658 (659)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.6E-91 3.5E-96 850.4 57.7 569 162-774 35-612 (617)
7 PLN03140 ABC transporter G fam 100.0 2E-89 4.3E-94 885.6 60.4 594 112-776 861-1467(1470)
8 KOG0065 Pleiotropic drug resis 100.0 5.2E-86 1.1E-90 801.2 33.2 561 162-775 801-1383(1391)
9 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-83 5.7E-88 832.2 58.8 559 164-774 775-1389(1394)
10 KOG0055 Multidrug/pheromone ex 100.0 3E-58 6.4E-63 561.2 36.8 258 79-414 315-576 (1228)
11 TIGR01257 rim_protein retinal- 100.0 1E-52 2.2E-57 545.1 56.1 208 165-417 943-1152(2272)
12 PTZ00265 multidrug resistance 100.0 1.5E-47 3.3E-52 498.6 42.4 278 79-401 349-655 (1466)
13 COG1126 GlnQ ABC-type polar am 100.0 3E-46 6.4E-51 378.4 22.4 222 163-436 13-239 (240)
14 COG1123 ATPase components of v 100.0 2.3E-44 5E-49 414.0 35.1 213 165-414 22-244 (539)
15 PLN03232 ABC transporter C fam 100.0 6.6E-43 1.4E-47 459.3 51.7 246 79-414 582-828 (1495)
16 PLN03130 ABC transporter C fam 100.0 1.1E-42 2.3E-47 457.4 53.1 196 166-414 631-828 (1622)
17 COG1135 AbcC ABC-type metal io 100.0 4.7E-44 1E-48 379.5 22.9 225 163-438 17-247 (339)
18 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-41 2.5E-46 448.1 45.8 197 166-414 652-850 (1522)
19 COG1125 OpuBA ABC-type proline 100.0 1.4E-43 3.1E-48 365.1 20.9 210 164-414 13-225 (309)
20 COG3839 MalK ABC-type sugar tr 100.0 5.3E-43 1.2E-47 386.1 23.4 217 167-434 18-235 (338)
21 COG3842 PotA ABC-type spermidi 100.0 6.3E-43 1.4E-47 387.5 21.9 223 164-436 17-240 (352)
22 COG1131 CcmA ABC-type multidru 100.0 1.2E-42 2.7E-47 384.6 23.9 212 164-418 17-230 (293)
23 COG1120 FepC ABC-type cobalami 100.0 4.7E-43 1E-47 373.1 19.6 210 165-413 15-227 (258)
24 PRK10762 D-ribose transporter 100.0 1.4E-41 3E-46 405.4 33.4 204 165-408 17-224 (501)
25 PRK15134 microcin C ABC transp 100.0 3.4E-41 7.3E-46 404.6 36.2 207 165-411 22-243 (529)
26 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-41 5.1E-46 405.3 34.4 202 165-409 13-253 (520)
27 COG1116 TauB ABC-type nitrate/ 100.0 2.9E-42 6.3E-47 360.0 22.3 195 165-404 16-212 (248)
28 PRK09700 D-allose transporter 100.0 4E-41 8.6E-46 402.4 32.9 208 166-410 19-230 (510)
29 COG1127 Ttg2A ABC-type transpo 100.0 6.6E-42 1.4E-46 351.9 22.3 210 164-414 20-235 (263)
30 PTZ00243 ABC transporter; Prov 100.0 1.7E-39 3.6E-44 426.7 50.9 198 164-413 672-869 (1560)
31 COG1117 PstB ABC-type phosphat 100.0 3.6E-42 7.9E-47 346.8 19.1 222 165-434 20-249 (253)
32 PRK10261 glutathione transport 100.0 1.6E-40 3.5E-45 404.6 37.4 208 165-412 29-256 (623)
33 COG1118 CysA ABC-type sulfate/ 100.0 4.8E-42 1E-46 363.2 19.6 224 164-436 14-241 (345)
34 PRK11288 araG L-arabinose tran 100.0 1.6E-40 3.4E-45 396.2 33.6 200 166-406 18-221 (501)
35 COG3638 ABC-type phosphate/pho 100.0 8.8E-42 1.9E-46 350.1 19.3 217 163-414 15-237 (258)
36 COG1136 SalX ABC-type antimicr 100.0 1.8E-41 3.9E-46 354.3 21.9 196 165-403 18-220 (226)
37 TIGR01271 CFTR_protein cystic 100.0 1.5E-39 3.2E-44 427.1 44.7 197 165-414 439-636 (1490)
38 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-40 5.3E-45 394.8 34.1 204 165-407 14-223 (500)
39 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.7E-41 1E-45 355.8 23.1 208 166-414 18-227 (254)
40 COG4555 NatA ABC-type Na+ tran 100.0 8.5E-42 1.8E-46 340.9 15.7 210 161-414 11-222 (245)
41 KOG0058 Peptide exporter, ABC 100.0 2E-41 4.3E-46 394.2 19.6 227 115-414 462-691 (716)
42 TIGR02314 ABC_MetN D-methionin 100.0 5.4E-40 1.2E-44 370.1 28.0 206 165-413 18-229 (343)
43 TIGR03265 PhnT2 putative 2-ami 100.0 5.3E-40 1.2E-44 372.5 26.9 206 165-413 17-223 (353)
44 PRK11650 ugpC glycerol-3-phosp 100.0 5.9E-40 1.3E-44 372.6 27.0 206 165-413 17-223 (356)
45 PRK11432 fbpC ferric transport 100.0 7.4E-40 1.6E-44 370.7 27.0 218 165-433 19-237 (351)
46 TIGR03258 PhnT 2-aminoethylpho 100.0 8.9E-40 1.9E-44 371.2 27.4 206 166-413 19-227 (362)
47 COG2274 SunT ABC-type bacterio 100.0 5.4E-40 1.2E-44 397.1 25.5 258 78-414 436-696 (709)
48 PRK09452 potA putrescine/sperm 100.0 1.7E-39 3.6E-44 370.3 27.1 218 166-434 28-246 (375)
49 PRK13537 nodulation ABC transp 100.0 2.9E-39 6.2E-44 360.8 27.4 206 165-414 20-227 (306)
50 PRK10938 putative molybdenum t 100.0 3.5E-39 7.7E-44 383.9 29.7 194 166-411 17-221 (490)
51 COG1122 CbiO ABC-type cobalt t 100.0 1E-39 2.2E-44 347.4 22.3 207 165-414 17-228 (235)
52 PRK10851 sulfate/thiosulfate t 100.0 5E-39 1.1E-43 364.6 27.1 210 165-413 15-225 (353)
53 COG1124 DppF ABC-type dipeptid 100.0 2.5E-39 5.4E-44 334.8 21.6 205 166-414 21-231 (252)
54 cd03261 ABC_Org_Solvent_Resist 100.0 7.3E-39 1.6E-43 345.1 25.9 207 165-413 13-225 (235)
55 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-39 2.4E-44 320.5 17.5 201 170-413 17-218 (231)
56 PRK11607 potG putrescine trans 100.0 1.2E-38 2.7E-43 363.8 27.8 205 166-413 33-238 (377)
57 COG0410 LivF ABC-type branched 100.0 5.9E-39 1.3E-43 329.9 22.2 207 164-414 15-226 (237)
58 TIGR01186 proV glycine betaine 100.0 8.4E-39 1.8E-43 362.3 25.5 207 164-413 5-218 (363)
59 PRK11000 maltose/maltodextrin 100.0 1.5E-38 3.3E-43 363.3 27.4 206 165-413 16-222 (369)
60 PRK11819 putative ABC transpor 100.0 8E-37 1.7E-41 368.3 43.6 219 165-412 20-248 (556)
61 COG2884 FtsE Predicted ATPase 100.0 4.7E-39 1E-43 318.8 19.4 201 164-408 14-220 (223)
62 KOG0057 Mitochondrial Fe/S clu 100.0 5.6E-39 1.2E-43 361.7 21.6 229 110-414 343-574 (591)
63 COG0411 LivG ABC-type branched 100.0 3.4E-39 7.5E-44 334.0 18.1 221 163-414 15-239 (250)
64 PRK11153 metN DL-methionine tr 100.0 3.2E-38 7E-43 357.6 27.6 206 165-413 18-229 (343)
65 PRK13536 nodulation factor exp 100.0 3.6E-38 7.8E-43 355.8 27.8 206 165-414 54-261 (340)
66 TIGR01188 drrA daunorubicin re 100.0 1.7E-38 3.7E-43 354.6 24.1 206 165-414 6-213 (302)
67 PRK15064 ABC transporter ATP-b 100.0 9.9E-37 2.2E-41 366.0 41.0 219 166-413 15-241 (530)
68 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-36 3.7E-41 365.4 43.1 220 165-413 18-247 (552)
69 cd03259 ABC_Carb_Solutes_like 100.0 3E-38 6.6E-43 335.2 24.2 200 165-407 13-213 (213)
70 PRK13637 cbiO cobalt transport 100.0 5.2E-38 1.1E-42 348.1 27.0 218 165-425 20-248 (287)
71 KOG0054 Multidrug resistance-a 100.0 5.7E-36 1.2E-40 374.8 47.9 194 167-413 536-730 (1381)
72 cd03265 ABC_DrrA DrrA is the A 100.0 5.6E-38 1.2E-42 334.9 25.2 205 165-412 13-219 (220)
73 TIGR01288 nodI ATP-binding ABC 100.0 8.2E-38 1.8E-42 349.3 26.9 206 165-414 17-224 (303)
74 cd03296 ABC_CysA_sulfate_impor 100.0 1E-37 2.2E-42 337.2 26.5 209 166-413 16-225 (239)
75 PRK13634 cbiO cobalt transport 100.0 7.9E-38 1.7E-42 347.1 26.2 218 165-425 20-249 (290)
76 PRK13643 cbiO cobalt transport 100.0 7.7E-38 1.7E-42 346.9 25.7 224 166-433 20-255 (288)
77 cd03258 ABC_MetN_methionine_tr 100.0 8.8E-38 1.9E-42 336.3 25.1 205 166-413 19-229 (233)
78 cd03219 ABC_Mj1267_LivG_branch 100.0 9E-38 2E-42 336.8 25.2 215 165-413 13-231 (236)
79 COG4559 ABC-type hemin transpo 100.0 2.3E-38 5.1E-43 318.6 19.1 207 165-413 14-229 (259)
80 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-37 2.3E-42 330.9 24.9 199 166-407 14-213 (213)
81 PRK11174 cysteine/glutathione 100.0 9.3E-38 2E-42 380.0 27.7 206 166-414 364-572 (588)
82 cd03218 ABC_YhbG The ABC trans 100.0 1.3E-37 2.8E-42 334.7 25.3 205 165-413 13-221 (232)
83 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-37 3E-42 331.9 25.3 201 165-410 17-219 (220)
84 cd03260 ABC_PstB_phosphate_tra 100.0 7.2E-38 1.6E-42 335.6 23.2 203 166-411 14-226 (227)
85 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-37 3.3E-42 346.7 26.6 205 165-414 15-221 (301)
86 TIGR00960 3a0501s02 Type II (G 100.0 8E-38 1.7E-42 332.7 23.1 194 166-403 17-216 (216)
87 cd03263 ABC_subfamily_A The AB 100.0 1.4E-37 3E-42 331.7 24.0 203 165-412 15-219 (220)
88 KOG0056 Heavy metal exporter H 100.0 9E-39 2E-43 351.3 14.9 250 85-414 509-761 (790)
89 cd03256 ABC_PhnC_transporter A 100.0 2E-37 4.4E-42 335.0 24.7 214 165-413 14-233 (241)
90 PRK13650 cbiO cobalt transport 100.0 2.8E-37 6E-42 341.0 26.2 216 166-425 21-243 (279)
91 cd03224 ABC_TM1139_LivF_branch 100.0 2E-37 4.4E-42 330.8 24.2 202 166-413 14-220 (222)
92 COG0444 DppD ABC-type dipeptid 100.0 2.4E-37 5.2E-42 333.6 24.8 232 164-438 17-259 (316)
93 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.1E-37 4.6E-42 340.3 24.9 208 163-413 35-249 (269)
94 KOG0055 Multidrug/pheromone ex 100.0 6.1E-38 1.3E-42 383.7 22.7 256 80-414 953-1213(1228)
95 PRK13647 cbiO cobalt transport 100.0 4E-37 8.7E-42 338.9 27.1 215 166-424 19-239 (274)
96 COG1132 MdlB ABC-type multidru 100.0 7.6E-38 1.6E-42 378.9 23.2 254 79-414 296-552 (567)
97 PRK13651 cobalt transporter AT 100.0 2.5E-37 5.3E-42 344.8 25.4 205 165-413 20-253 (305)
98 PRK13631 cbiO cobalt transport 100.0 3.6E-37 7.8E-42 345.4 26.7 221 165-429 39-283 (320)
99 cd03269 ABC_putative_ATPase Th 100.0 2.1E-37 4.7E-42 327.9 23.4 198 165-407 13-210 (210)
100 COG4175 ProV ABC-type proline/ 100.0 3.9E-38 8.4E-43 333.5 17.4 223 163-436 39-268 (386)
101 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-37 4E-42 330.3 22.9 195 165-403 17-218 (218)
102 PRK11831 putative ABC transpor 100.0 5.2E-37 1.1E-41 337.3 26.9 206 166-413 21-232 (269)
103 cd03234 ABCG_White The White s 100.0 3.2E-37 7E-42 330.4 24.6 203 165-407 20-226 (226)
104 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.8E-37 8.3E-42 333.2 25.4 206 165-413 14-224 (242)
105 cd03233 ABC_PDR_domain1 The pl 100.0 2.7E-37 5.9E-42 325.2 23.5 179 164-407 19-202 (202)
106 PRK15079 oligopeptide ABC tran 100.0 4.9E-37 1.1E-41 345.6 27.1 208 165-413 34-250 (331)
107 PRK10070 glycine betaine trans 100.0 4.4E-37 9.5E-42 352.2 27.1 207 164-413 40-253 (400)
108 PRK11629 lolD lipoprotein tran 100.0 6.8E-37 1.5E-41 329.4 26.6 201 165-409 22-229 (233)
109 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.4E-37 1.6E-41 329.7 26.8 206 165-414 14-221 (236)
110 PRK09536 btuD corrinoid ABC tr 100.0 3.9E-37 8.4E-42 352.9 26.0 209 165-413 16-227 (402)
111 PRK13646 cbiO cobalt transport 100.0 3.6E-37 7.7E-42 341.4 24.9 206 165-413 20-234 (286)
112 PRK09473 oppD oligopeptide tra 100.0 6.6E-37 1.4E-41 344.7 27.3 213 165-413 29-250 (330)
113 cd03268 ABC_BcrA_bacitracin_re 100.0 3.8E-37 8.3E-42 325.6 23.1 195 165-407 13-208 (208)
114 COG1137 YhbG ABC-type (unclass 100.0 2.3E-38 5.1E-43 315.9 12.9 210 163-414 15-228 (243)
115 TIGR02315 ABC_phnC phosphonate 100.0 3.5E-37 7.6E-42 333.6 23.3 213 165-412 15-233 (243)
116 cd03266 ABC_NatA_sodium_export 100.0 5.3E-37 1.1E-41 326.8 23.6 198 166-407 19-218 (218)
117 PRK13635 cbiO cobalt transport 100.0 8.8E-37 1.9E-41 336.9 26.2 215 166-424 21-242 (279)
118 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-36 2.4E-41 329.3 26.3 205 165-413 14-224 (240)
119 PRK11264 putative amino-acid A 100.0 8.7E-37 1.9E-41 332.0 25.7 204 166-413 17-232 (250)
120 PRK11022 dppD dipeptide transp 100.0 1E-36 2.2E-41 342.9 26.9 213 165-413 20-242 (326)
121 cd03226 ABC_cobalt_CbiO_domain 100.0 3.5E-37 7.5E-42 325.2 21.7 192 165-404 13-205 (205)
122 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.6E-37 1.4E-41 378.5 27.7 252 79-414 419-673 (686)
123 PRK13636 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 337.0 25.8 206 166-414 20-231 (283)
124 TIGR02211 LolD_lipo_ex lipopro 100.0 1E-36 2.2E-41 325.3 24.5 196 165-404 18-220 (221)
125 cd03264 ABC_drug_resistance_li 100.0 6.7E-37 1.4E-41 324.4 22.8 196 166-407 14-211 (211)
126 cd03267 ABC_NatA_like Similar 100.0 1.3E-36 2.8E-41 327.8 24.7 233 119-407 1-236 (236)
127 PRK11248 tauB taurine transpor 100.0 1.7E-36 3.7E-41 330.4 25.9 200 166-410 15-216 (255)
128 PRK13632 cbiO cobalt transport 100.0 2E-36 4.2E-41 333.1 26.4 205 165-413 22-230 (271)
129 TIGR03415 ABC_choXWV_ATP choli 100.0 9.7E-37 2.1E-41 347.0 24.6 208 163-413 35-253 (382)
130 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-36 3E-41 326.3 24.1 202 165-412 13-219 (230)
131 PRK11308 dppF dipeptide transp 100.0 2.5E-36 5.5E-41 339.6 27.3 207 165-413 28-243 (327)
132 cd03292 ABC_FtsE_transporter F 100.0 1.2E-36 2.6E-41 323.1 23.2 195 165-403 14-214 (214)
133 cd03257 ABC_NikE_OppD_transpor 100.0 2E-36 4.3E-41 324.5 25.1 201 166-407 19-228 (228)
134 PRK11176 lipid transporter ATP 100.0 8.2E-37 1.8E-41 371.4 25.0 208 166-414 357-567 (582)
135 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-36 3.1E-41 330.9 24.1 194 166-410 26-219 (257)
136 PRK13652 cbiO cobalt transport 100.0 3.9E-36 8.5E-41 331.6 27.7 205 166-413 18-226 (277)
137 COG4987 CydC ABC-type transpor 100.0 2E-37 4.3E-42 349.1 17.6 208 165-414 351-561 (573)
138 TIGR03375 type_I_sec_LssB type 100.0 1.3E-36 2.8E-41 376.5 26.4 258 78-414 428-688 (694)
139 TIGR03005 ectoine_ehuA ectoine 100.0 2.5E-36 5.4E-41 328.9 25.5 205 166-413 14-235 (252)
140 PRK10895 lipopolysaccharide AB 100.0 2.2E-36 4.7E-41 327.2 24.7 206 165-413 16-225 (241)
141 COG4988 CydD ABC-type transpor 100.0 8.7E-37 1.9E-41 349.8 22.7 225 114-414 316-543 (559)
142 PRK11614 livF leucine/isoleuci 100.0 2E-36 4.3E-41 326.6 24.3 202 166-413 19-225 (237)
143 PRK14273 phosphate ABC transpo 100.0 3.8E-36 8.2E-41 327.8 26.7 206 166-413 21-237 (254)
144 TIGR02673 FtsE cell division A 100.0 2E-36 4.4E-41 321.4 23.8 194 165-402 15-214 (214)
145 PRK13633 cobalt transporter AT 100.0 3E-36 6.5E-41 333.1 25.9 205 165-413 23-232 (280)
146 PRK13548 hmuV hemin importer A 100.0 3.2E-36 6.9E-41 329.0 25.7 206 165-413 15-229 (258)
147 TIGR00972 3a0107s01c2 phosphat 100.0 3.8E-36 8.3E-41 326.4 26.2 206 166-413 15-231 (247)
148 PRK10790 putative multidrug tr 100.0 2.3E-36 5E-41 367.9 27.1 206 166-414 355-563 (592)
149 cd03300 ABC_PotA_N PotA is an 100.0 3.8E-36 8.2E-41 323.4 25.4 205 166-413 14-219 (232)
150 PRK14242 phosphate transporter 100.0 5.6E-36 1.2E-40 326.3 27.0 207 166-413 20-236 (253)
151 PRK13648 cbiO cobalt transport 100.0 6E-36 1.3E-40 328.9 27.4 215 166-424 23-244 (269)
152 PRK11160 cysteine/glutathione 100.0 1.8E-36 4E-41 366.8 25.5 200 166-414 354-562 (574)
153 PRK10584 putative ABC transpor 100.0 4.3E-36 9.4E-41 322.1 25.5 197 166-406 24-227 (228)
154 PRK13640 cbiO cobalt transport 100.0 4.7E-36 1E-40 331.7 26.5 207 166-413 21-231 (282)
155 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-36 3.4E-41 376.4 25.3 256 79-414 439-697 (708)
156 PRK14247 phosphate ABC transpo 100.0 6E-36 1.3E-40 325.5 26.7 212 166-413 17-233 (250)
157 PRK15093 antimicrobial peptide 100.0 4.3E-36 9.4E-41 338.7 26.4 218 165-413 20-247 (330)
158 TIGR03411 urea_trans_UrtD urea 100.0 4.6E-36 9.9E-41 324.8 25.6 211 166-413 16-230 (242)
159 PRK11300 livG leucine/isoleuci 100.0 5E-36 1.1E-40 327.1 26.0 221 165-413 18-242 (255)
160 PRK13649 cbiO cobalt transport 100.0 5.5E-36 1.2E-40 331.1 26.7 205 165-413 20-233 (280)
161 TIGR03740 galliderm_ABC gallid 100.0 3.9E-36 8.4E-41 321.4 24.6 197 165-410 13-209 (223)
162 PRK13644 cbiO cobalt transport 100.0 4.3E-36 9.3E-41 330.7 25.5 203 166-413 16-223 (274)
163 PRK13638 cbiO cobalt transport 100.0 6.2E-36 1.4E-40 329.1 26.7 204 166-413 15-224 (271)
164 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.4E-36 3.1E-41 377.2 24.2 260 79-414 437-700 (710)
165 PRK14268 phosphate ABC transpo 100.0 6.5E-36 1.4E-40 326.7 26.5 206 166-413 26-241 (258)
166 PRK10908 cell division protein 100.0 4.6E-36 1E-40 320.6 24.7 196 165-404 15-216 (222)
167 PRK13639 cbiO cobalt transport 100.0 7.7E-36 1.7E-40 329.0 27.2 204 166-413 16-225 (275)
168 PRK14250 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 323.8 25.2 200 166-413 17-220 (241)
169 PRK13641 cbiO cobalt transport 100.0 3.1E-36 6.6E-41 334.1 23.4 205 165-413 20-233 (287)
170 PRK11124 artP arginine transpo 100.0 5.5E-36 1.2E-40 324.2 24.7 203 166-412 16-228 (242)
171 PRK14267 phosphate ABC transpo 100.0 8.2E-36 1.8E-40 325.0 26.1 212 166-413 18-236 (253)
172 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.7E-36 1E-40 317.9 23.5 195 170-407 16-211 (211)
173 PRK10619 histidine/lysine/argi 100.0 8.2E-36 1.8E-40 325.7 26.0 205 165-413 18-240 (257)
174 TIGR01978 sufC FeS assembly AT 100.0 6.7E-36 1.5E-40 323.6 25.1 213 165-413 13-233 (243)
175 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-36 5.1E-41 373.9 23.8 223 117-414 477-702 (711)
176 cd03299 ABC_ModC_like Archeal 100.0 9.2E-36 2E-40 321.0 25.2 204 167-413 14-218 (235)
177 TIGR00968 3a0106s01 sulfate AB 100.0 9.4E-36 2E-40 321.4 25.3 205 166-413 14-219 (237)
178 PRK11144 modC molybdate transp 100.0 3.6E-36 7.8E-41 342.1 23.0 207 170-433 16-229 (352)
179 PRK10575 iron-hydroxamate tran 100.0 6.5E-36 1.4E-40 327.9 23.9 209 166-413 25-236 (265)
180 PRK10253 iron-enterobactin tra 100.0 8E-36 1.7E-40 327.2 24.4 208 166-413 21-232 (265)
181 TIGR02770 nickel_nikD nickel i 100.0 6.1E-36 1.3E-40 321.4 23.0 207 167-413 1-214 (230)
182 PRK14237 phosphate transporter 100.0 2.5E-35 5.5E-40 323.6 28.3 210 166-413 34-250 (267)
183 PRK13645 cbiO cobalt transport 100.0 9.7E-36 2.1E-40 330.6 25.2 205 166-413 25-239 (289)
184 PRK14235 phosphate transporter 100.0 1.5E-35 3.2E-40 325.4 26.3 208 166-413 33-250 (267)
185 PRK10744 pstB phosphate transp 100.0 1.5E-35 3.3E-40 324.1 26.1 207 166-413 27-243 (260)
186 TIGR01184 ntrCD nitrate transp 100.0 5.6E-36 1.2E-40 321.6 22.1 202 168-412 1-202 (230)
187 PRK10771 thiQ thiamine transpo 100.0 1.2E-35 2.7E-40 319.4 24.7 201 170-413 17-218 (232)
188 COG4525 TauB ABC-type taurine 100.0 4.5E-36 9.7E-41 297.9 19.4 205 165-414 18-224 (259)
189 TIGR02769 nickel_nikE nickel i 100.0 9.3E-36 2E-40 326.7 24.1 206 165-413 24-239 (265)
190 cd03262 ABC_HisP_GlnQ_permease 100.0 7.5E-36 1.6E-40 316.7 22.2 195 165-403 13-213 (213)
191 TIGR02142 modC_ABC molybdenum 100.0 8.9E-36 1.9E-40 339.3 24.4 199 170-413 15-220 (354)
192 PRK14245 phosphate ABC transpo 100.0 2.1E-35 4.5E-40 321.3 26.0 210 165-413 16-233 (250)
193 PRK13642 cbiO cobalt transport 100.0 2.5E-35 5.5E-40 325.2 27.1 204 166-413 21-228 (277)
194 PRK14257 phosphate ABC transpo 100.0 2E-35 4.4E-40 332.3 26.8 210 166-413 96-312 (329)
195 PRK11231 fecE iron-dicitrate t 100.0 1.1E-35 2.5E-40 324.2 23.9 209 165-413 15-226 (255)
196 PRK09984 phosphonate/organopho 100.0 1.2E-35 2.6E-40 325.3 24.1 216 165-412 17-240 (262)
197 PTZ00265 multidrug resistance 100.0 2.8E-36 6.1E-41 393.4 22.5 230 117-414 1164-1452(1466)
198 TIGR01277 thiQ thiamine ABC tr 100.0 1.6E-35 3.5E-40 314.4 24.0 199 167-408 13-212 (213)
199 PRK14256 phosphate ABC transpo 100.0 2.9E-35 6.4E-40 320.4 26.6 211 166-413 18-235 (252)
200 PRK14239 phosphate transporter 100.0 3.7E-35 8E-40 319.6 27.3 210 166-413 19-235 (252)
201 PRK14241 phosphate transporter 100.0 2.4E-35 5.3E-40 322.2 26.0 211 166-413 18-241 (258)
202 cd03225 ABC_cobalt_CbiO_domain 100.0 8.3E-36 1.8E-40 316.0 21.4 194 165-402 14-211 (211)
203 PRK14270 phosphate ABC transpo 100.0 3.5E-35 7.5E-40 319.7 26.8 210 166-413 18-234 (251)
204 TIGR03873 F420-0_ABC_ATP propo 100.0 1.8E-35 3.8E-40 322.9 24.3 208 165-413 14-225 (256)
205 PRK14269 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 319.0 25.9 208 166-413 16-229 (246)
206 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-35 3.3E-40 357.0 25.3 255 79-414 285-542 (544)
207 PRK14274 phosphate ABC transpo 100.0 4.1E-35 8.9E-40 320.6 26.4 210 166-413 26-242 (259)
208 PRK11147 ABC transporter ATPas 100.0 1.2E-33 2.6E-38 345.4 42.0 220 165-412 16-241 (635)
209 PRK14240 phosphate transporter 100.0 5.3E-35 1.2E-39 318.0 26.9 210 166-413 17-233 (250)
210 PRK14259 phosphate ABC transpo 100.0 2.9E-35 6.2E-40 323.4 25.0 205 166-413 27-252 (269)
211 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-35 6.1E-40 307.9 23.7 171 165-407 22-194 (194)
212 PRK14262 phosphate ABC transpo 100.0 4.3E-35 9.3E-40 318.8 26.0 210 166-413 17-233 (250)
213 PRK11701 phnK phosphonate C-P 100.0 4E-35 8.7E-40 320.5 25.9 206 166-413 20-240 (258)
214 PRK10418 nikD nickel transport 100.0 4.9E-35 1.1E-39 319.0 26.4 203 166-413 17-229 (254)
215 cd03235 ABC_Metallic_Cations A 100.0 1.1E-35 2.5E-40 315.5 20.0 200 165-407 12-213 (213)
216 TIGR01846 type_I_sec_HlyB type 100.0 2.4E-35 5.1E-40 365.0 26.0 256 79-414 422-680 (694)
217 TIGR02203 MsbA_lipidA lipid A 100.0 2E-35 4.4E-40 358.5 24.6 207 166-413 346-555 (571)
218 COG4181 Predicted ABC-type tra 100.0 1.6E-35 3.4E-40 288.3 18.8 202 160-405 18-226 (228)
219 PRK14244 phosphate ABC transpo 100.0 6.7E-35 1.5E-39 317.4 26.0 212 165-413 18-236 (251)
220 PRK14248 phosphate ABC transpo 100.0 1.1E-34 2.5E-39 318.6 28.0 207 166-413 35-251 (268)
221 PRK15112 antimicrobial peptide 100.0 3.2E-35 6.9E-40 322.7 23.6 207 165-413 26-238 (267)
222 PRK13657 cyclic beta-1,2-gluca 100.0 4.9E-35 1.1E-39 355.9 27.4 207 166-414 349-558 (588)
223 PRK14271 phosphate ABC transpo 100.0 1E-34 2.2E-39 320.1 27.2 211 165-413 34-250 (276)
224 PRK14258 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 317.5 26.9 212 166-413 21-244 (261)
225 PRK14272 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 316.0 26.7 207 166-413 18-235 (252)
226 PRK14253 phosphate ABC transpo 100.0 7E-35 1.5E-39 316.9 24.9 210 165-412 16-231 (249)
227 PRK14236 phosphate transporter 100.0 1.2E-34 2.6E-39 319.0 27.0 207 166-413 39-255 (272)
228 PRK10789 putative multidrug tr 100.0 3E-35 6.4E-40 356.0 24.2 207 166-414 329-538 (569)
229 TIGR02982 heterocyst_DevA ABC 100.0 6.9E-35 1.5E-39 311.1 24.2 196 165-403 18-219 (220)
230 PRK14255 phosphate ABC transpo 100.0 2E-34 4.2E-39 314.0 27.8 210 166-413 19-235 (252)
231 PRK13547 hmuV hemin importer A 100.0 7.5E-35 1.6E-39 320.0 24.6 213 165-413 14-243 (272)
232 PRK14249 phosphate ABC transpo 100.0 1.6E-34 3.5E-39 314.4 27.0 210 166-413 18-234 (251)
233 cd03232 ABC_PDR_domain2 The pl 100.0 7.2E-35 1.6E-39 304.4 22.9 170 165-407 20-192 (192)
234 PRK14251 phosphate ABC transpo 100.0 1.2E-34 2.7E-39 315.3 25.6 210 166-413 18-234 (251)
235 PRK14261 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 315.1 26.0 210 166-413 20-236 (253)
236 PRK14260 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 316.3 25.6 210 166-413 21-242 (259)
237 PRK15439 autoinducer 2 ABC tra 100.0 7.7E-35 1.7E-39 347.8 25.6 199 166-412 25-227 (510)
238 cd03297 ABC_ModC_molybdenum_tr 100.0 7.3E-35 1.6E-39 309.5 22.5 192 170-407 16-214 (214)
239 TIGR01192 chvA glucan exporter 100.0 6.5E-35 1.4E-39 353.8 25.2 207 166-414 349-558 (585)
240 COG1123 ATPase components of v 100.0 4.7E-35 1E-39 337.2 22.5 210 163-413 302-518 (539)
241 PRK14275 phosphate ABC transpo 100.0 2E-34 4.4E-39 319.3 26.7 203 166-413 53-269 (286)
242 cd03252 ABCC_Hemolysin The ABC 100.0 5.4E-35 1.2E-39 315.4 21.5 206 165-414 15-225 (237)
243 PRK13549 xylose transporter AT 100.0 6.6E-35 1.4E-39 348.4 24.5 205 166-411 19-229 (506)
244 COG4152 ABC-type uncharacteriz 100.0 2.3E-35 5E-40 302.5 17.2 210 163-417 13-222 (300)
245 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-34 4.1E-39 314.3 25.3 206 166-413 17-237 (253)
246 cd03245 ABCC_bacteriocin_expor 100.0 5.5E-35 1.2E-39 311.7 20.7 195 165-407 17-220 (220)
247 COG4618 ArpD ABC-type protease 100.0 7.9E-35 1.7E-39 325.1 22.5 256 81-417 305-563 (580)
248 PRK14263 phosphate ABC transpo 100.0 1.2E-34 2.6E-39 317.0 23.4 209 165-413 21-244 (261)
249 PRK14238 phosphate transporter 100.0 2.2E-34 4.7E-39 316.8 25.5 207 166-413 38-254 (271)
250 TIGR01257 rim_protein retinal- 100.0 1.3E-34 2.9E-39 377.0 27.7 209 165-417 1952-2162(2272)
251 PRK14265 phosphate ABC transpo 100.0 2.2E-34 4.7E-39 317.2 25.2 231 109-413 11-257 (274)
252 PRK10419 nikE nickel transport 100.0 1.7E-34 3.8E-39 317.0 24.3 206 165-413 25-240 (268)
253 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.8E-35 1.7E-39 314.4 20.7 206 165-414 16-226 (238)
254 PRK14243 phosphate transporter 100.0 2.7E-34 5.8E-39 314.9 25.0 208 166-413 24-247 (264)
255 PRK14254 phosphate ABC transpo 100.0 4.3E-34 9.4E-39 316.3 26.8 205 166-413 53-268 (285)
256 TIGR03608 L_ocin_972_ABC putat 100.0 1.6E-34 3.5E-39 304.9 22.0 189 165-398 11-206 (206)
257 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-34 2.7E-39 351.9 24.2 207 165-413 353-562 (576)
258 COG4148 ModC ABC-type molybdat 100.0 1.9E-35 4.2E-40 308.1 14.5 197 169-414 15-218 (352)
259 PRK10247 putative ABC transpor 100.0 2E-34 4.3E-39 308.6 22.6 198 166-410 21-223 (225)
260 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.6E-34 3.4E-39 317.2 22.3 198 166-414 18-225 (275)
261 PRK10261 glutathione transport 100.0 2.1E-34 4.5E-39 351.1 25.3 207 165-413 337-552 (623)
262 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-34 2.8E-39 310.8 20.6 205 166-414 17-226 (229)
263 PRK03695 vitamin B12-transport 100.0 2.2E-34 4.8E-39 312.7 22.7 201 167-413 11-221 (248)
264 cd03251 ABCC_MsbA MsbA is an e 100.0 3.1E-34 6.7E-39 308.9 23.5 205 166-414 16-225 (234)
265 PRK14266 phosphate ABC transpo 100.0 5.9E-34 1.3E-38 309.8 25.8 207 166-413 17-233 (250)
266 COG5265 ATM1 ABC-type transpor 100.0 2.3E-35 5.1E-40 322.6 14.6 224 116-414 260-486 (497)
267 CHL00131 ycf16 sulfate ABC tra 100.0 7.9E-34 1.7E-38 309.2 26.5 211 166-412 21-239 (252)
268 PRK14246 phosphate ABC transpo 100.0 1E-33 2.2E-38 309.0 26.5 212 165-413 23-240 (257)
269 PRK15056 manganese/iron transp 100.0 3.5E-34 7.6E-39 315.4 22.9 205 166-412 21-228 (272)
270 PLN03232 ABC transporter C fam 100.0 2.5E-34 5.5E-39 378.3 25.3 256 79-414 1197-1458(1495)
271 COG4604 CeuD ABC-type enteroch 100.0 2.9E-35 6.3E-40 292.8 12.1 211 163-414 12-225 (252)
272 PLN03130 ABC transporter C fam 100.0 3E-34 6.4E-39 377.8 25.5 255 79-414 1200-1461(1622)
273 PRK14252 phosphate ABC transpo 100.0 1.4E-33 3E-38 309.5 25.9 210 166-413 30-248 (265)
274 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-34 1.4E-38 304.5 22.6 193 162-407 32-224 (224)
275 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.7E-34 1.2E-38 299.5 21.8 179 166-420 14-199 (200)
276 PRK13543 cytochrome c biogenes 100.0 1.2E-33 2.6E-38 300.2 24.4 188 166-400 25-212 (214)
277 PRK09580 sufC cysteine desulfu 100.0 1.6E-33 3.6E-38 305.9 26.0 219 166-421 15-241 (248)
278 PRK13546 teichoic acids export 100.0 5.1E-33 1.1E-37 304.0 29.1 198 163-414 35-232 (264)
279 PRK14264 phosphate ABC transpo 100.0 1.6E-33 3.6E-38 314.7 25.7 219 166-413 59-288 (305)
280 TIGR02868 CydC thiol reductant 100.0 4.3E-34 9.2E-39 343.7 22.3 226 79-383 298-528 (529)
281 PRK13538 cytochrome c biogenes 100.0 1.5E-33 3.3E-38 297.3 23.5 186 166-398 15-202 (204)
282 COG4161 ArtP ABC-type arginine 100.0 4E-34 8.7E-39 275.4 17.1 202 165-410 15-226 (242)
283 PRK15134 microcin C ABC transp 100.0 7.5E-34 1.6E-38 341.1 23.7 207 165-413 299-514 (529)
284 PRK09544 znuC high-affinity zi 100.0 1.5E-33 3.3E-38 306.4 23.8 189 166-413 18-208 (251)
285 cd03244 ABCC_MRP_domain2 Domai 100.0 7.2E-34 1.6E-38 303.3 20.8 193 166-408 18-220 (221)
286 PRK10982 galactose/methyl gala 100.0 7.8E-34 1.7E-38 338.1 23.3 205 165-411 11-220 (491)
287 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-33 2.5E-38 290.3 21.2 158 166-403 14-173 (173)
288 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-33 3.1E-38 296.7 22.4 184 165-398 13-198 (201)
289 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-33 3.7E-38 337.5 25.9 206 165-414 297-517 (520)
290 cd03253 ABCC_ATM1_transporter 100.0 9.4E-34 2E-38 305.5 21.4 206 166-413 15-223 (236)
291 cd03288 ABCC_SUR2 The SUR doma 100.0 2.1E-33 4.5E-38 306.7 23.5 204 166-414 35-243 (257)
292 TIGR01166 cbiO cobalt transpor 100.0 1.2E-33 2.5E-38 294.8 20.5 177 165-384 5-187 (190)
293 TIGR01189 ccmA heme ABC export 100.0 2.3E-33 5.1E-38 294.4 22.9 183 165-397 13-197 (198)
294 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-33 2.5E-38 372.7 25.3 256 79-414 1247-1508(1522)
295 COG4598 HisP ABC-type histidin 100.0 4.6E-34 1E-38 279.7 15.9 209 161-413 15-240 (256)
296 TIGR02324 CP_lyasePhnL phospho 100.0 2.9E-33 6.3E-38 299.3 23.3 191 165-399 21-223 (224)
297 PRK13539 cytochrome c biogenes 100.0 2.9E-33 6.4E-38 295.7 23.0 185 166-400 16-200 (207)
298 PRK13545 tagH teichoic acids e 100.0 3.2E-33 7E-38 323.3 24.7 198 165-416 37-234 (549)
299 cd03229 ABC_Class3 This class 100.0 1.9E-33 4.2E-38 290.1 20.5 161 165-402 13-178 (178)
300 TIGR01187 potA spermidine/putr 100.0 1.6E-33 3.5E-38 317.1 21.7 188 183-413 1-189 (325)
301 TIGR02857 CydD thiol reductant 100.0 2E-33 4.3E-38 337.9 22.1 191 166-398 336-529 (529)
302 cd03215 ABC_Carb_Monos_II This 100.0 2.3E-33 4.9E-38 290.6 19.2 161 167-403 15-182 (182)
303 PTZ00243 ABC transporter; Prov 100.0 3.5E-33 7.7E-38 367.2 25.6 224 116-414 1306-1533(1560)
304 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.5E-33 1.4E-37 293.1 22.0 183 166-409 22-207 (207)
305 PRK15177 Vi polysaccharide exp 100.0 5.7E-33 1.2E-37 294.7 21.5 195 166-418 1-196 (213)
306 cd03248 ABCC_TAP TAP, the Tran 100.0 5.4E-33 1.2E-37 297.7 20.3 194 166-403 28-226 (226)
307 PRK09700 D-allose transporter 100.0 4.1E-33 8.8E-38 333.4 21.5 209 166-409 277-493 (510)
308 TIGR03771 anch_rpt_ABC anchore 100.0 4E-33 8.7E-38 298.1 19.1 198 173-413 1-200 (223)
309 cd03246 ABCC_Protease_Secretio 100.0 5.7E-33 1.2E-37 285.2 19.3 155 166-403 16-173 (173)
310 PRK13549 xylose transporter AT 100.0 5.1E-33 1.1E-37 332.2 21.6 207 165-412 275-492 (506)
311 cd03247 ABCC_cytochrome_bd The 100.0 5.9E-33 1.3E-37 286.4 18.7 161 166-407 16-178 (178)
312 PRK13540 cytochrome c biogenes 100.0 1.3E-32 2.7E-37 289.3 21.4 182 165-396 14-197 (200)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.4E-32 7.3E-37 299.8 25.5 195 166-413 51-246 (282)
314 PRK11288 araG L-arabinose tran 100.0 5.6E-33 1.2E-37 331.4 20.4 209 166-412 267-483 (501)
315 PRK10762 D-ribose transporter 100.0 8E-33 1.7E-37 330.1 21.3 209 166-412 266-482 (501)
316 COG4172 ABC-type uncharacteriz 100.0 2.2E-32 4.8E-37 297.1 22.3 210 163-413 298-515 (534)
317 COG1129 MglA ABC-type sugar tr 100.0 1.2E-32 2.5E-37 315.6 21.3 207 163-409 19-229 (500)
318 PRK10522 multidrug transporter 100.0 2.3E-32 4.9E-37 329.6 24.9 189 166-406 337-530 (547)
319 COG4586 ABC-type uncharacteriz 100.0 4.6E-33 1E-37 290.0 15.7 215 160-417 32-249 (325)
320 COG0396 sufC Cysteine desulfur 100.0 6E-32 1.3E-36 276.8 22.5 219 165-423 17-242 (251)
321 TIGR01271 CFTR_protein cystic 100.0 3.7E-32 7.9E-37 357.4 26.8 222 117-414 1216-1440(1490)
322 cd03237 ABC_RNaseL_inhibitor_d 100.0 6E-32 1.3E-36 292.7 23.1 190 167-412 9-205 (246)
323 COG4619 ABC-type uncharacteriz 100.0 7.6E-33 1.7E-37 268.8 13.8 196 163-403 14-212 (223)
324 cd03214 ABC_Iron-Siderophores_ 100.0 2.2E-32 4.8E-37 282.7 18.0 166 165-407 12-180 (180)
325 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-32 5.3E-37 326.0 21.0 207 165-410 273-488 (500)
326 cd03290 ABCC_SUR1_N The SUR do 100.0 3.1E-32 6.6E-37 290.3 19.5 189 165-402 14-218 (218)
327 PRK15439 autoinducer 2 ABC tra 100.0 2.8E-32 6.1E-37 325.8 21.3 205 167-412 278-490 (510)
328 cd03250 ABCC_MRP_domain1 Domai 100.0 3.9E-32 8.5E-37 286.4 19.9 185 166-402 19-204 (204)
329 COG4674 Uncharacterized ABC-ty 100.0 2.6E-32 5.6E-37 271.4 16.2 212 165-413 18-234 (249)
330 PRK13541 cytochrome c biogenes 100.0 1.3E-31 2.9E-36 280.4 21.9 177 167-395 16-192 (195)
331 PRK10535 macrolide transporter 100.0 1.6E-31 3.5E-36 326.9 26.0 204 165-413 21-231 (648)
332 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-31 3.5E-36 271.7 21.1 145 166-405 14-162 (163)
333 cd03223 ABCD_peroxisomal_ALDP 100.0 1.5E-31 3.2E-36 272.9 19.9 150 165-401 14-163 (166)
334 cd03228 ABCC_MRP_Like The MRP 100.0 1.5E-31 3.2E-36 274.3 19.2 153 166-402 16-171 (171)
335 COG1119 ModF ABC-type molybden 100.0 9.3E-32 2E-36 278.8 17.8 208 164-408 43-256 (257)
336 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-31 3.7E-36 322.2 21.8 186 166-406 356-551 (555)
337 PRK15064 ABC transporter ATP-b 100.0 4.7E-31 1E-35 317.0 24.6 189 165-413 332-524 (530)
338 PRK10938 putative molybdenum t 100.0 3.1E-31 6.8E-36 315.8 21.5 204 165-407 273-485 (490)
339 COG4172 ABC-type uncharacteriz 100.0 6.7E-31 1.4E-35 285.6 21.8 215 163-413 21-246 (534)
340 PRK10982 galactose/methyl gala 100.0 4E-31 8.7E-36 314.8 21.0 202 166-410 262-476 (491)
341 COG1101 PhnK ABC-type uncharac 100.0 2.3E-31 5.1E-36 268.7 15.8 208 163-407 17-231 (263)
342 COG4608 AppF ABC-type oligopep 100.0 5.8E-31 1.3E-35 278.7 18.0 174 164-413 25-198 (268)
343 PRK11819 putative ABC transpor 100.0 2.2E-30 4.8E-35 312.4 25.1 191 165-412 337-531 (556)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.4E-30 7.3E-35 310.8 24.7 190 165-411 335-528 (552)
345 PRK13409 putative ATPase RIL; 100.0 2.4E-30 5.2E-35 311.7 22.7 183 167-408 354-536 (590)
346 COG3845 ABC-type uncharacteriz 100.0 1.8E-30 3.9E-35 291.3 19.8 204 164-408 16-223 (501)
347 KOG0059 Lipid exporter ABCA1 a 100.0 5.6E-31 1.2E-35 330.7 17.7 208 167-418 580-791 (885)
348 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-30 3.5E-35 282.7 17.0 190 166-407 15-220 (255)
349 PRK10636 putative ABC transpor 100.0 1.3E-29 2.7E-34 309.5 23.5 189 165-414 325-517 (638)
350 COG4167 SapF ABC-type antimicr 100.0 1.7E-29 3.6E-34 248.3 18.5 209 163-413 24-238 (267)
351 TIGR00954 3a01203 Peroxysomal 100.0 1.4E-29 3E-34 310.1 22.4 181 166-399 466-652 (659)
352 PRK11147 ABC transporter ATPas 100.0 3E-29 6.6E-34 306.7 23.7 191 165-412 332-526 (635)
353 COG1134 TagH ABC-type polysacc 100.0 1.2E-28 2.7E-33 256.1 24.5 240 117-419 2-241 (249)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.1E-29 6.7E-34 249.6 18.9 131 166-402 14-144 (144)
355 COG4133 CcmA ABC-type transpor 100.0 1.4E-29 3E-34 251.8 15.7 179 163-387 13-193 (209)
356 PLN03073 ABC transporter F fam 100.0 1.2E-28 2.7E-33 301.9 25.2 190 165-414 522-714 (718)
357 PRK10636 putative ABC transpor 100.0 3E-28 6.4E-33 297.5 27.9 215 165-412 14-234 (638)
358 cd03222 ABC_RNaseL_inhibitor T 100.0 5.9E-29 1.3E-33 255.1 17.7 146 165-411 13-160 (177)
359 cd03238 ABC_UvrA The excision 100.0 8E-29 1.7E-33 253.9 18.5 157 164-403 7-166 (176)
360 COG4136 ABC-type uncharacteriz 100.0 5.6E-29 1.2E-33 237.5 13.4 185 163-388 13-198 (213)
361 PRK13409 putative ATPase RIL; 100.0 1.6E-28 3.4E-33 296.0 16.8 182 165-401 87-287 (590)
362 KOG0054 Multidrug resistance-a 100.0 1.2E-27 2.7E-32 300.3 20.8 257 80-414 1102-1362(1381)
363 COG4107 PhnK ABC-type phosphon 100.0 7.5E-28 1.6E-32 234.9 14.5 202 166-413 20-240 (258)
364 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.5E-27 7.6E-32 238.4 17.9 142 166-402 13-157 (157)
365 COG0488 Uup ATPase components 99.9 1.7E-26 3.8E-31 271.6 24.9 217 164-410 15-236 (530)
366 PF00005 ABC_tran: ABC transpo 99.9 1.2E-27 2.5E-32 235.7 12.1 134 168-352 1-137 (137)
367 PLN03073 ABC transporter F fam 99.9 7.3E-27 1.6E-31 286.4 18.7 217 165-412 190-429 (718)
368 KOG0061 Transporter, ABC super 99.9 3.7E-27 7.9E-32 284.7 10.5 127 852-986 22-149 (613)
369 cd03270 ABC_UvrA_I The excisio 99.9 1.3E-25 2.7E-30 240.6 20.7 99 301-407 119-226 (226)
370 cd03271 ABC_UvrA_II The excisi 99.9 2E-25 4.4E-30 242.0 18.1 197 165-409 8-261 (261)
371 COG4778 PhnL ABC-type phosphon 99.9 2E-25 4.4E-30 217.4 11.5 194 164-400 23-227 (235)
372 cd03278 ABC_SMC_barmotin Barmo 99.9 1E-24 2.2E-29 228.5 13.4 167 169-400 14-190 (197)
373 COG4138 BtuD ABC-type cobalami 99.9 1.6E-25 3.4E-30 219.0 5.4 197 167-413 14-220 (248)
374 COG0488 Uup ATPase components 99.9 1.4E-23 3E-28 247.2 21.8 189 164-414 334-525 (530)
375 COG1129 MglA ABC-type sugar tr 99.9 1.3E-23 2.9E-28 241.2 19.1 204 167-409 274-485 (500)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.8E-23 3.8E-28 226.6 15.2 185 165-399 15-234 (243)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.2E-24 1.3E-28 225.0 3.0 185 164-400 16-204 (212)
378 cd03240 ABC_Rad50 The catalyti 99.9 2.3E-22 4.9E-27 212.0 13.5 167 170-400 15-197 (204)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.5E-22 5.5E-27 218.7 10.7 183 178-399 25-242 (251)
380 COG4178 ABC-type uncharacteriz 99.9 2.8E-21 6.1E-26 226.2 18.3 180 166-399 407-587 (604)
381 PRK00349 uvrA excinuclease ABC 99.9 7.6E-21 1.7E-25 236.7 21.2 106 300-413 811-926 (943)
382 COG3845 ABC-type uncharacteriz 99.9 9.9E-21 2.1E-25 213.3 19.8 211 165-411 271-489 (501)
383 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.8E-21 6.2E-26 205.2 14.6 179 169-402 18-210 (213)
384 KOG0927 Predicted transporter 99.9 1.2E-20 2.5E-25 213.2 20.0 217 165-413 88-308 (614)
385 PRK00635 excinuclease ABC subu 99.9 2E-20 4.3E-25 241.6 23.9 105 302-414 792-906 (1809)
386 TIGR00630 uvra excinuclease AB 99.8 8.1E-20 1.7E-24 227.2 19.7 105 300-412 809-923 (924)
387 TIGR00955 3a01204 The Eye Pigm 99.8 4.8E-21 1E-25 233.8 8.3 128 854-986 16-144 (617)
388 COG4170 SapD ABC-type antimicr 99.8 5.4E-20 1.2E-24 184.9 12.7 221 163-414 18-248 (330)
389 COG4615 PvdE ABC-type sideroph 99.8 8.2E-21 1.8E-25 206.5 7.1 191 167-408 338-531 (546)
390 KOG0927 Predicted transporter 99.8 2.7E-20 5.9E-25 210.3 10.6 186 166-410 404-592 (614)
391 PLN03211 ABC transporter G-25; 99.8 3E-20 6.6E-25 227.0 11.8 132 853-985 37-184 (659)
392 COG1245 Predicted ATPase, RNas 99.8 1.3E-19 2.8E-24 200.6 14.9 170 172-399 361-530 (591)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.3E-19 2.8E-24 190.2 13.7 173 167-402 11-192 (198)
394 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.6E-19 7.7E-24 193.5 11.1 76 321-399 153-232 (247)
395 KOG2355 Predicted ABC-type tra 99.8 5.4E-18 1.2E-22 170.4 16.7 198 166-415 28-238 (291)
396 COG1131 CcmA ABC-type multidru 99.8 3.9E-19 8.5E-24 197.3 8.5 119 856-988 5-126 (293)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.1E-18 6.8E-23 181.6 13.4 82 320-402 123-211 (213)
398 KOG0060 Long-chain acyl-CoA tr 99.8 7.9E-18 1.7E-22 191.8 16.1 189 164-400 447-641 (659)
399 cd03280 ABC_MutS2 MutS2 homolo 99.7 3.2E-18 7E-23 180.1 10.1 82 322-407 90-172 (200)
400 COG2401 ABC-type ATPase fused 99.7 5.2E-17 1.1E-21 178.0 16.8 257 79-404 322-588 (593)
401 KOG0066 eIF2-interacting prote 99.7 2.5E-17 5.5E-22 180.4 13.2 180 160-400 595-776 (807)
402 KOG0059 Lipid exporter ABCA1 a 99.7 2E-16 4.4E-21 199.6 23.1 88 883-972 580-671 (885)
403 KOG0062 ATPase component of AB 99.7 2E-17 4.3E-22 186.3 11.4 188 165-411 93-282 (582)
404 PF01061 ABC2_membrane: ABC-2 99.7 3.1E-18 6.8E-23 179.7 3.9 208 503-716 1-210 (210)
405 KOG0062 ATPase component of AB 99.7 5E-17 1.1E-21 183.1 12.2 182 166-405 378-559 (582)
406 cd03233 ABC_PDR_domain1 The pl 99.7 7.1E-17 1.5E-21 170.2 9.7 117 855-980 3-125 (202)
407 cd03239 ABC_SMC_head The struc 99.7 6E-16 1.3E-20 159.6 14.6 74 324-400 95-172 (178)
408 COG1245 Predicted ATPase, RNas 99.7 2.5E-16 5.3E-21 174.9 12.3 96 298-400 193-288 (591)
409 COG3842 PotA ABC-type spermidi 99.7 8.5E-17 1.8E-21 179.5 8.7 114 855-985 5-119 (352)
410 COG1116 TauB ABC-type nitrate/ 99.7 1.5E-16 3.2E-21 167.3 7.8 99 855-970 3-101 (248)
411 COG3839 MalK ABC-type sugar tr 99.6 3.3E-16 7.3E-21 173.8 8.2 86 883-970 18-104 (338)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.6 3.5E-16 7.5E-21 167.0 7.9 153 165-408 17-175 (222)
413 KOG0064 Peroxisomal long-chain 99.6 1.2E-15 2.6E-20 171.5 11.3 176 165-391 495-674 (728)
414 cd03227 ABC_Class2 ABC-type Cl 99.6 8.5E-16 1.8E-20 156.2 9.2 75 323-400 77-155 (162)
415 cd03241 ABC_RecN RecN ATPase i 99.6 3.4E-15 7.5E-20 164.9 14.1 76 323-402 170-249 (276)
416 COG0178 UvrA Excinuclease ATPa 99.6 1.3E-14 2.9E-19 171.1 18.9 118 302-435 805-931 (935)
417 PRK13537 nodulation ABC transp 99.6 1.4E-15 3.1E-20 170.2 10.0 103 853-970 5-109 (306)
418 cd03283 ABC_MutS-like MutS-lik 99.6 1.5E-15 3.3E-20 159.4 9.5 147 165-398 14-163 (199)
419 TIGR03265 PhnT2 putative 2-ami 99.6 1.8E-15 3.9E-20 172.3 9.4 100 855-969 4-104 (353)
420 PRK00635 excinuclease ABC subu 99.6 1.6E-14 3.5E-19 187.6 19.1 107 301-414 1681-1796(1809)
421 cd03232 ABC_PDR_domain2 The pl 99.6 2.6E-15 5.6E-20 157.0 9.8 112 855-979 3-114 (192)
422 PRK11432 fbpC ferric transport 99.6 2.6E-15 5.6E-20 170.8 10.0 101 855-970 6-107 (351)
423 COG1136 SalX ABC-type antimicr 99.6 2.8E-15 6E-20 157.6 8.4 89 881-971 18-113 (226)
424 cd03234 ABCG_White The White s 99.6 3.7E-15 8.1E-20 159.8 9.4 108 856-972 4-112 (226)
425 cd03261 ABC_Org_Solvent_Resist 99.6 3.9E-15 8.4E-20 160.6 9.1 97 857-968 2-104 (235)
426 COG1118 CysA ABC-type sulfate/ 99.6 1.8E-15 4E-20 161.7 6.0 88 880-969 14-105 (345)
427 COG1126 GlnQ ABC-type polar am 99.6 2.8E-15 6.1E-20 153.4 6.8 96 856-966 3-102 (240)
428 TIGR00630 uvra excinuclease AB 99.6 2.8E-14 6.1E-19 178.1 16.7 104 302-413 470-582 (924)
429 cd03269 ABC_putative_ATPase Th 99.6 5.7E-15 1.2E-19 156.5 8.7 98 857-970 2-99 (210)
430 KOG0058 Peptide exporter, ABC 99.6 2.9E-15 6.4E-20 176.2 6.8 115 846-978 455-573 (716)
431 PRK11650 ugpC glycerol-3-phosp 99.6 6.7E-15 1.5E-19 167.8 9.5 100 856-969 4-104 (356)
432 COG1125 OpuBA ABC-type proline 99.6 2.7E-15 5.8E-20 156.4 5.4 112 856-985 2-116 (309)
433 cd03265 ABC_DrrA DrrA is the A 99.6 6.2E-15 1.3E-19 157.4 8.3 98 857-969 2-101 (220)
434 PRK11607 potG putrescine trans 99.6 1.1E-14 2.5E-19 167.0 10.8 100 855-969 19-119 (377)
435 COG0410 LivF ABC-type branched 99.5 4.1E-15 8.8E-20 154.2 6.3 101 856-971 4-108 (237)
436 PRK00349 uvrA excinuclease ABC 99.5 3.5E-14 7.5E-19 177.6 15.9 104 302-413 472-584 (943)
437 PRK09452 potA putrescine/sperm 99.5 9.5E-15 2.1E-19 167.3 10.0 100 855-969 14-114 (375)
438 COG1120 FepC ABC-type cobalami 99.5 3.8E-15 8.3E-20 159.6 6.3 95 856-965 3-100 (258)
439 COG4525 TauB ABC-type taurine 99.5 5.7E-15 1.2E-19 148.0 6.8 97 881-984 18-114 (259)
440 cd03242 ABC_RecF RecF is a rec 99.5 8.6E-14 1.9E-18 153.3 16.8 78 320-403 180-269 (270)
441 cd03243 ABC_MutS_homologs The 99.5 9.8E-15 2.1E-19 153.9 8.8 85 323-411 91-176 (202)
442 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 9.6E-15 2.1E-19 155.7 8.8 104 856-970 1-111 (218)
443 cd03268 ABC_BcrA_bacitracin_re 99.5 1.1E-14 2.4E-19 154.1 9.1 98 857-969 2-100 (208)
444 TIGR03522 GldA_ABC_ATP gliding 99.5 7.8E-15 1.7E-19 164.1 8.3 100 856-970 3-104 (301)
445 cd03263 ABC_subfamily_A The AB 99.5 9.4E-15 2E-19 156.0 8.3 102 856-970 1-104 (220)
446 KOG0066 eIF2-interacting prote 99.5 2.3E-14 5E-19 157.4 11.3 209 165-409 277-494 (807)
447 TIGR03258 PhnT 2-aminoethylpho 99.5 1.1E-14 2.5E-19 166.0 9.4 100 855-969 5-107 (362)
448 PRK13536 nodulation factor exp 99.5 1.3E-14 2.8E-19 164.5 9.6 100 855-969 41-142 (340)
449 cd03224 ABC_TM1139_LivF_branch 99.5 8.4E-15 1.8E-19 156.5 7.6 99 856-969 1-103 (222)
450 PRK10851 sulfate/thiosulfate t 99.5 1.3E-14 2.7E-19 165.4 9.3 98 856-968 3-101 (353)
451 cd03295 ABC_OpuCA_Osmoprotecti 99.5 1.1E-14 2.4E-19 157.8 8.5 99 857-969 2-103 (242)
452 cd03219 ABC_Mj1267_LivG_branch 99.5 1.6E-14 3.4E-19 155.9 9.4 98 857-969 2-103 (236)
453 cd03293 ABC_NrtD_SsuB_transpor 99.5 1.8E-14 3.8E-19 153.9 9.5 100 857-969 2-101 (220)
454 cd03218 ABC_YhbG The ABC trans 99.5 1.6E-14 3.5E-19 155.5 9.0 98 857-969 2-103 (232)
455 TIGR00960 3a0501s02 Type II (G 99.5 1.3E-14 2.8E-19 154.4 8.2 101 856-969 2-108 (216)
456 TIGR01288 nodI ATP-binding ABC 99.5 1.7E-14 3.6E-19 161.7 9.4 100 855-969 4-105 (303)
457 TIGR02314 ABC_MetN D-methionin 99.5 2.1E-14 4.6E-19 162.6 9.8 103 856-969 2-110 (343)
458 cd03258 ABC_MetN_methionine_tr 99.5 1.7E-14 3.6E-19 155.5 8.5 103 856-969 2-110 (233)
459 cd03301 ABC_MalK_N The N-termi 99.5 2.3E-14 5.1E-19 152.1 9.5 98 857-969 2-100 (213)
460 PRK11000 maltose/maltodextrin 99.5 2.2E-14 4.7E-19 164.7 9.7 99 856-969 4-103 (369)
461 cd03213 ABCG_EPDR ABCG transpo 99.5 2.6E-14 5.7E-19 149.7 9.6 116 855-980 3-118 (194)
462 PRK14267 phosphate ABC transpo 99.5 2.1E-14 4.6E-19 156.6 9.2 102 855-969 4-113 (253)
463 PRK11629 lolD lipoprotein tran 99.5 2.5E-14 5.4E-19 154.2 9.7 104 855-969 5-115 (233)
464 cd03266 ABC_NatA_sodium_export 99.5 1.7E-14 3.7E-19 153.8 8.1 103 856-969 2-106 (218)
465 TIGR01188 drrA daunorubicin re 99.5 1.2E-14 2.7E-19 162.7 7.3 88 881-970 6-95 (302)
466 PRK13539 cytochrome c biogenes 99.5 2.4E-14 5.3E-19 151.5 9.0 99 856-969 3-101 (207)
467 cd03260 ABC_PstB_phosphate_tra 99.5 1.3E-14 2.8E-19 155.7 7.0 99 857-969 2-108 (227)
468 PRK14247 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 156.0 9.1 101 856-969 4-110 (250)
469 PRK13538 cytochrome c biogenes 99.5 2.5E-14 5.4E-19 151.0 8.9 99 856-969 2-102 (204)
470 PRK11153 metN DL-methionine tr 99.5 2.5E-14 5.4E-19 162.7 9.5 103 856-969 2-110 (343)
471 cd03257 ABC_NikE_OppD_transpor 99.5 2.7E-14 5.9E-19 153.1 9.3 104 856-970 2-113 (228)
472 TIGR02673 FtsE cell division A 99.5 1.7E-14 3.6E-19 153.4 7.4 100 856-969 2-107 (214)
473 cd03259 ABC_Carb_Solutes_like 99.5 2.7E-14 5.8E-19 151.7 8.9 98 857-969 2-100 (213)
474 cd03226 ABC_cobalt_CbiO_domain 99.5 1.9E-14 4.2E-19 151.9 7.6 86 881-968 13-99 (205)
475 cd03292 ABC_FtsE_transporter F 99.5 2.6E-14 5.7E-19 151.8 8.5 99 857-969 2-106 (214)
476 TIGR02211 LolD_lipo_ex lipopro 99.5 2.8E-14 6E-19 152.4 8.6 103 856-969 2-111 (221)
477 TIGR01193 bacteriocin_ABC ABC- 99.5 1.4E-12 3E-17 162.8 24.9 98 854-966 472-572 (708)
478 cd03264 ABC_drug_resistance_li 99.5 2.6E-14 5.7E-19 151.6 8.1 97 857-969 2-100 (211)
479 PRK10895 lipopolysaccharide AB 99.5 2.8E-14 6E-19 154.6 8.4 99 856-969 4-106 (241)
480 PRK13540 cytochrome c biogenes 99.5 3.2E-14 7E-19 149.7 8.6 96 856-966 2-99 (200)
481 PRK14241 phosphate transporter 99.5 4.1E-14 8.9E-19 154.9 9.6 102 855-969 4-113 (258)
482 TIGR02868 CydC thiol reductant 99.5 2E-14 4.4E-19 173.4 7.8 98 853-965 332-431 (529)
483 cd03262 ABC_HisP_GlnQ_permease 99.5 3.1E-14 6.7E-19 151.2 8.3 95 857-966 2-101 (213)
484 PRK11248 tauB taurine transpor 99.5 4.1E-14 9E-19 154.6 9.5 97 856-969 2-98 (255)
485 PRK10908 cell division protein 99.5 4.2E-14 9E-19 151.3 9.2 100 856-969 2-107 (222)
486 TIGR01186 proV glycine betaine 99.5 2.8E-14 6E-19 162.6 8.2 87 881-969 6-99 (363)
487 cd03296 ABC_CysA_sulfate_impor 99.5 4.8E-14 1.1E-18 152.5 9.7 100 855-969 2-102 (239)
488 PRK13543 cytochrome c biogenes 99.5 5.5E-14 1.2E-18 149.6 9.8 100 855-969 11-110 (214)
489 TIGR03740 galliderm_ABC gallid 99.5 5.3E-14 1.1E-18 150.6 9.7 97 857-969 2-98 (223)
490 PRK14259 phosphate ABC transpo 99.5 3.2E-14 6.9E-19 156.7 8.2 103 854-970 12-122 (269)
491 TIGR00972 3a0107s01c2 phosphat 99.5 2.8E-14 6.1E-19 155.1 7.7 100 856-969 2-109 (247)
492 PRK13637 cbiO cobalt transport 99.5 3.5E-14 7.6E-19 157.8 8.3 103 856-968 3-111 (287)
493 PRK09493 glnQ glutamine ABC tr 99.5 4.9E-14 1.1E-18 152.6 9.2 96 856-966 2-102 (240)
494 cd03256 ABC_PhnC_transporter A 99.5 3.5E-14 7.6E-19 153.7 7.8 96 857-966 2-103 (241)
495 PRK13634 cbiO cobalt transport 99.5 3.2E-14 7E-19 158.3 7.6 103 856-968 3-113 (290)
496 TIGR03608 L_ocin_972_ABC putat 99.5 4.4E-14 9.6E-19 149.2 8.3 87 881-969 11-104 (206)
497 cd03230 ABC_DR_subfamily_A Thi 99.5 5.3E-14 1.2E-18 144.6 8.7 94 857-965 2-97 (173)
498 cd03231 ABC_CcmA_heme_exporter 99.5 5E-14 1.1E-18 148.4 8.6 95 857-966 2-98 (201)
499 TIGR01189 ccmA heme ABC export 99.5 5.8E-14 1.3E-18 147.5 9.0 99 857-970 2-102 (198)
500 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 6.1E-14 1.3E-18 151.4 9.3 99 856-969 2-102 (236)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-184 Score=1658.31 Aligned_cols=877 Identities=52% Similarity=0.897 Sum_probs=811.8
Q ss_pred CCcHHHhHHHHHhhCCchhhhhhcccccC-CCCcccccccCCCHHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC
Q 001957 36 EDDEEALKWAALEKLPTYNRLRKGILTTS-RGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL 114 (991)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (991)
+||||++||||+|||||++| +++.+. ++ ++|+.+++..++..+.++..+..++|+++++.++++|.+++ +.
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 44999999999999999998 555432 22 79999999999999999999999999999999999999998 88
Q ss_pred CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 001957 115 PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTL 194 (991)
Q Consensus 115 p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTL 194 (991)
|.++++++++.+++++..| ||++|...+.++.++...+.. ++.+.+||+|+||.++||+|++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999887766554 4556789999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcC
Q 001957 195 LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (991)
Q Consensus 195 L~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (991)
|++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ ++.|+++.+
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999988777789999999999999889999999999999999999999999999999988865 455555431
Q ss_pred CCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCC
Q 001957 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (991)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGL 354 (991)
.++|++++++||++|+||+|||++.||+||||||||+||++++++++++||||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 355 D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
|++|+++|+++||+++|..+.|.+++++||+++++++||+|++|++|++||+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCccCcccccccccccccCCcHHHHHHHHHHHHHH
Q 001957 435 EVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514 (991)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l 514 (991)
++++.+++.|||..++.|+.+.++.||.+.|.+++.++++..+++.++++.+.|+.++..++|.+++|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHHHHHHhhcchhhhhhhccCc
Q 001957 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRF 594 (991)
Q Consensus 515 ~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~ 594 (991)
+++||++++++++++.+++|+|+|++|+++++ ++..++..+.|++||++++.+|++++|++++++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 5667788899999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 001957 595 FPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFA 674 (991)
Q Consensus 595 Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~ 674 (991)
|+||||.+|.+++++|+.++++++|.+|+||++||.+++++||+|+|+++++++|++++|++++++++++.+|+++|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccCCC---------------Ccchhhhhhcc
Q 001957 675 LLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---------------SETLGVQVLKS 739 (991)
Q Consensus 675 ~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~~~---------------~~~~G~~~L~~ 739 (991)
++++.+++||+||+++||+||+|++|+||++|+++++++|||++.+|.|.|.++ ..+.|.++|+.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999973221 25678999999
Q ss_pred cCcc-----cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCC
Q 001957 740 RGFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNT 814 (991)
Q Consensus 740 ~~~~-----~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (991)
++|. ...+|+|+|+|+++||.++|++++.+++.|++|..+++++++.++..++.......
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~--------------- 754 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG--------------- 754 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc---------------
Confidence 9888 77789999999999999999999999999999999999887755443321110000
Q ss_pred CCCCCCccccccCccchhhhhhhhcCCCCCCCCccCCCCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCC
Q 001957 815 RSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPG 894 (991)
Q Consensus 815 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG 894 (991)
. .+. ... ... ....+++++++|++|..++++||.|.+++|-+++.|| +++|||+||||+||||
T Consensus 755 -~-~~~----------~~~-~~~-s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG 817 (1391)
T KOG0065|consen 755 -S-SSE----------IEK-LDD-SSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPG 817 (1391)
T ss_pred -c-ccc----------ccc-ccc-ccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCC
Confidence 0 000 000 000 0111356889999999999999999999999999998 7899999999999999
Q ss_pred eEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v 974 (991)
+||||||+|||||||||||||||||+|+|+|||+|||+|++|++|+|++|||||+|+|+|++||||||+|||+||||++|
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccccce
Q 001957 975 DSETRKVGTKSP 986 (991)
Q Consensus 975 ~~~~k~~~veev 986 (991)
+.+||++|||||
T Consensus 898 ~~~ek~~yVe~V 909 (1391)
T KOG0065|consen 898 SDEEKYEYVEEV 909 (1391)
T ss_pred CHHHHHHHHHHH
Confidence 999999999998
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.4e-166 Score=1596.55 Aligned_cols=965 Identities=59% Similarity=0.986 Sum_probs=838.4
Q ss_pred ccccccCCCCcccCC-------CCCCCcHHHhHHHHHhhCCchhhhhhcccccC-----CCC---cccccccCCCHHhHH
Q 001957 18 ASRWNTNSIGAFSRS-------SREEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQ 82 (991)
Q Consensus 18 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~l~~~~~~ 82 (991)
.++|.. +|+|++. +..|||||+|+|||+||||||+|+|++++... .|+ ..|+|+++||.++++
T Consensus 18 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1470)
T PLN03140 18 RSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQ 95 (1470)
T ss_pred hhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHH
Confidence 345743 6888542 13678999999999999999999999999653 122 236999999999999
Q ss_pred HHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCcc
Q 001957 83 RLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKK 162 (991)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 162 (991)
.+++++++++++|++++++++++|.+++|+++|+++|+|+||+|++++.++++.+||++|.+.+.++.+...++...+++
T Consensus 96 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~ 175 (1470)
T PLN03140 96 KFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK 175 (1470)
T ss_pred HHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999989999999999999999888776555444445
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
.+++||+||||.|+|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 56889999999999999999999999999999999999998877889999999999987666788999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|||.|+++|++++.+++++.++.++++++++.|+.+++.+|++.+.++.+.+..++++|+.+||++|+||.||+++++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 99999999999887666555556667777777788888899999988888888888999999999999999999999999
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||++|+++|++|||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999999999999876688999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCc
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (991)
++|+||++++++||+++||+||+++|+|||++++++++++++||.....|+++.++++|+++|++++.++++.+++..+.
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 495 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPF 495 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999998888999877778777899999999999998888877777777
Q ss_pred cCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHH
Q 001957 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562 (991)
Q Consensus 483 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lf 562 (991)
+++..++.....++|..++++|+++|++|++++++||++++++|+++.+++|+++|++||+++++..+..+++.+.|++|
T Consensus 496 ~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lf 575 (1470)
T PLN03140 496 DKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALL 575 (1470)
T ss_pred hhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Confidence 66665666566677999999999999999999999999999999999999999999999999877655566778899999
Q ss_pred HHHHHHHHhHHHHHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHH
Q 001957 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL 642 (991)
Q Consensus 563 f~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~ 642 (991)
|++++.+|+++++++.++.+||||+|||+++||++|+|++|++++++|+.++++++|++|+|||+||++++++||+|+++
T Consensus 576 f~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~ 655 (1470)
T PLN03140 576 FSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccc
Q 001957 643 LLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722 (991)
Q Consensus 643 ~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~ 722 (991)
+++++++++++|++++++++++.+|+++++++++++++|+||+|++++||+||+|++|+||++||++|+++|||.+.+|.
T Consensus 656 ~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~ 735 (1470)
T PLN03140 656 VFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWM 735 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cc-cCCCCcchhhhhhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 001957 723 KF-TQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (991)
Q Consensus 723 ~~-~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (991)
+. +.+...+.|.++|+.+|++..++|+|+++++|++|+++|+++++++|+|+++....+.++.++..++........+-
T Consensus 736 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1470)
T PLN03140 736 NKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPR 815 (1470)
T ss_pred CcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccc
Confidence 43 22334678999999999998889999999999999999999999999999987776665432211110000000000
Q ss_pred cccccCCCCCCCCCCCCCCccccccCccchhhhhhhhcCCCCCCCCccCCCCcceeecceEEEeeCchhhhhccccccce
Q 001957 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (991)
Q Consensus 802 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~ 881 (991)
.................|..... .+...... .+.......++++.+|+.|.+++|+||+|+|++|++++.+|...+++
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~ 893 (1470)
T PLN03140 816 SLSSADGNNTREVAIQRMSNPEG-LSKNRDSS-LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893 (1470)
T ss_pred ccccccccccccccccccccccc-cccccccc-cccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCc
Confidence 00000000000000000000000 00000000 00001122346788999999999999999999999888777777788
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
++|+||||.++||+++|||||||||||||||+||||+++|.++|+|.+||++.++..++|.+|||+|+|.|.|++||+|+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998767889999999999999999999999
Q ss_pred HHhhhhccCCCCCCHHHHhccccce
Q 001957 962 LLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 962 L~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|.|+|++|+|++++.++|.++|||+
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~v 998 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEV 998 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999999999999988888888775
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.9e-125 Score=1224.08 Aligned_cols=830 Identities=30% Similarity=0.486 Sum_probs=661.7
Q ss_pred cChHHHHHHHHHhhhhcCCCC--CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeece
Q 001957 94 VDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (991)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (991)
.|.+++++.+.++.++.+... ++++|+|+||+|++ ...+...+||+.|.+.+.+..+...+. .++++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 456666665545445554444 49999999999999 445666789999998887664443221 12334557899999
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.|||+++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 14999999999875432 2456999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
|+++++.+..+.. ...+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988764321100 000000 01123467899999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||+||++|+.+|++|||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCCccCc---
Q 001957 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (991)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 485 (991)
++++.+||+++||+||++.|+|||+++++++++ ++++...+. ....+.+++.++|+++..++++.+++..+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999998754 333322111 123568899999998877665554443221110
Q ss_pred ---------c---cccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 001957 486 ---------K---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (991)
Q Consensus 486 ---------~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~ 553 (991)
. ..+.....++|..|+|+|+++|++|++++++||+..++.|+++.+++|+++|++||+++.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0 000112234688999999999999999999999999999999999999999999999986543 4
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccch
Q 001957 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (991)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~ 633 (991)
.+.+.|++||++++.+|+++++++.++.+||||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHh
Q 001957 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (991)
Q Consensus 634 ~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~ 713 (991)
++||.|+++++++++++++++++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++|+++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccccc---cCC---------------------CCcchhhhhhcc-cCcccccchhhHHHHHHHHHHHHHHHHHH
Q 001957 714 NEFLGHSWKKF---TQD---------------------SSETLGVQVLKS-RGFFAHEYWYWLGLGALFGFVLLLNFAYT 768 (991)
Q Consensus 714 nef~~~~~~~~---~~~---------------------~~~~~G~~~L~~-~~~~~~~~~~w~~~g~l~~~~~~f~~~~~ 768 (991)
|||.+..+.|. +.+ .+.+.|.++|+. +++. ..|+|++++++++|+++|+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHH
Confidence 99999988874 110 124578899984 5554 45899999999999999999999
Q ss_pred HHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCC-CCCCCCCCccccccCccchhhhhhhhcCCCCCCCC
Q 001957 769 LALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNH-NTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGM 847 (991)
Q Consensus 769 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (991)
++++|+++......+++.+............. ....... +.....+. ... . .+ .... ....
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~~~~~~~--------~~~-~-~~-~~~~--~~~~ 749 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGET-----SASNKNDIEAGEVLGS--------TDL-T-DE-SDDV--NDEK 749 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccc-----cccccccccccccCCC--------Ccc-c-cc-cccc--cccc
Confidence 99999987665544433221110000000000 0000000 00000000 000 0 00 0000 0000
Q ss_pred ccC--CCCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-e
Q 001957 848 VLP--FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-T 924 (991)
Q Consensus 848 ~lp--~~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~ 924 (991)
..| .....++|+||+|.++.++ +++++|+|||+.++||+++||||+||||||||||+||||.+.|.. +
T Consensus 750 ~~~~~~~~~~l~~~nl~~~~~~~~---------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~ 820 (1394)
T TIGR00956 750 DMEKESGEDIFHWRNLTYEVKIKK---------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820 (1394)
T ss_pred cccccCCCceEEEEeeEEEecCCC---------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcce
Confidence 001 1123579999999986432 246899999999999999999999999999999999999987754 5
Q ss_pred EEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 925 GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 925 G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|+|++||++.. ..++|.+|||+|+|.|.|.+||||+|.|+|.||+|.+++++++...|+|+
T Consensus 821 G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 821 GDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEV 881 (1394)
T ss_pred eEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999975 46899999999999999999999999999999999989888887777764
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-92 Score=850.16 Aligned_cols=584 Identities=30% Similarity=0.511 Sum_probs=495.5
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
...+++.|+|+++++... .+ ..++||+||||.++|||++||||||||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346889999999987431 11 3567999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
||++|+|+.....+++|+|++||++.+....++.+|||.|+|.++|++||+|+|.|+|+++.+.. +.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCH-----
Confidence 99999999987667899999999887776678999999999999999999999999999986532 111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
++.+.++|++++.|||.+|+||++|+...|||||||||||+||..|+.+|+||||||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1234578999999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
||+.++.++++.|+++|+. |+|||++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhccCCCccccCHHHHHHHHHh-ccccccchhhhcCCccCcccccccccccccCCcHHHHHHHHHHHH
Q 001957 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQS-FHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRE 512 (991)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~ 512 (991)
.++.+..++.+.-... .........++. ....+... .......... ........++|.|+..+++|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTSK-----KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhccccc-----ccccccCCcHHHHHHHHHHHH
Confidence 9998743110000000 000011111110 00000000 0000000000 000011678999999999999
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhc
Q 001957 513 LLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRD 591 (991)
Q Consensus 513 ~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~ 591 (991)
++.++|++.++..|++|.+++++++|++||+.+.+...+ ..+.|++||.+.+..|..+. .++.+..++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999997655443 35689999988888776665 57788899999999999
Q ss_pred cCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 001957 592 FRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671 (991)
Q Consensus 592 ~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~ 671 (991)
+++|+.++|++|+.+.++|+.++.+++|.+|+|||+|++++..+|+.|++++++..+++.+++.+++++.++...|++++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccC--CCCcchhhhhhcccCcccccchh
Q 001957 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWY 749 (991)
Q Consensus 672 ~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~ 749 (991)
+++++.+++|+||+++.++||+||+|+.|+|+++|++|+++.|||.+....|... ..+...|.++++..++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999999744444433 3457789999999998654 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 750 WLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 750 w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
|.++.++.++.++|+++++++|++..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999864
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.4e-91 Score=847.41 Aligned_cols=609 Identities=20% Similarity=0.325 Sum_probs=474.2
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
.+.++++|.|+++.+.......+... +.+.+..-....++.. +.+.+++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETR-QIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccc-cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35799999999998743210111100 1111100000001111 223467999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+... .+.
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~~~---- 176 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------TKQ---- 176 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------CHH----
Confidence 999999998764 3589999999987542 245689999999999999999999998765422100 000
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+....++++++.+||++++||.+|++..++|||||||||+||++|+.+|++|||||||+|
T Consensus 177 --------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 177 --------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred --------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 112346778999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
||+.++.++++.|+++++ .++|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999986 5899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcCC-ccC--cc-----cccc-cccccccCCcHHHH
Q 001957 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP-FDK--SK-----SHRA-ALTTETYGVGKREL 504 (991)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~-----~~~~-~~~~~~~~~s~~~~ 504 (991)
+++++...+.+.....+.+ ...+++.+.|++... ++..+..... ... .. .... ......+..++|+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 112333444432111 1110000000 000 00 0000 00112245689999
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHH-hHHHHHHHHhhcc
Q 001957 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (991)
Q Consensus 505 ~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~~ 583 (991)
+.++++|+++. +|++.+...|+++.+++|+++|++||+++ . .+.+.+.|++||++++.++ ..+..++.+..+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 78888888999999999999999999874 2 2345678999999887654 5567778888999
Q ss_pred hhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001957 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (991)
Q Consensus 584 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~ 663 (991)
+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++++||.|++++++++++++++++++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCc-----cccccCCCCcchhhhhhc
Q 001957 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS-----WKKFTQDSSETLGVQVLK 738 (991)
Q Consensus 664 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~-----~~~~~~~~~~~~G~~~L~ 738 (991)
+.+|+++++++++++++|+||+++ +||+||+|++|+||++|+++|++.|||.+.+ +.|.........+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999998754 234321110111122333
Q ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
...+. ....|.++++|++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33332 235799999999999999999999998764
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.6e-91 Score=850.42 Aligned_cols=569 Identities=25% Similarity=0.419 Sum_probs=483.3
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.++.||+|||+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999998875556899999999986544567899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc-
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (991)
||+|||.|+++++.+... .+. +....++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKK------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999987643210 000 112357889999999999999999864
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 5899999999999999999999999999
Q ss_pred CeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhhcC
Q 001957 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (991)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (991)
|+++|+|+++++.+||+++||+||++.|||||+.++++.....+ .. ...+.+++.+.|+++...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999987532110 00 012234556666655444333222211
Q ss_pred CccCcc---cccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccch
Q 001957 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (991)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~ 557 (991)
...... .........+|..+++.|+..+++|.++..+||+..+..++++.+++|+++|++||+.+.+.. +.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 100000 000011223567889999999999999999999999999999999999999999999876543 34556
Q ss_pred hhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHH
Q 001957 558 AGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (991)
Q Consensus 558 ~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~f 636 (991)
.|++||++++.+|.++. .++.+..+|++|+|||.+++|++++|+++++++++|+.++.+++|++|+|||+|+++++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 89999999888887654 45566689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhh
Q 001957 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (991)
Q Consensus 637 f~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef 716 (991)
|.|+++++++.+++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|+++|+++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CCcchhhhhhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001957 717 LGHSW-KKFTQD---SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (991)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (991)
.+..+ .|...+ .+...|.++|+.+|+... ++|.+++++++|+++|+++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99776 443211 134568999999998654 469999999999999999999999875
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-89 Score=885.62 Aligned_cols=594 Identities=22% Similarity=0.381 Sum_probs=498.7
Q ss_pred CCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcH
Q 001957 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (991)
Q Consensus 112 ~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGK 191 (991)
++...+.+.|+||++.++...+.+ + ....+..++||+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~--------------------~-~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMK--------------------E-QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCcccc--------------------c-cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 355567899999999985421100 0 0111234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHH
Q 001957 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (991)
Q Consensus 192 STLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (991)
||||++|+|+.++ +.++|+|.+||++.+....++.++||+|+|.|++.+||+|||.|++.++.+... .+
T Consensus 920 TTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~~--- 988 (1470)
T PLN03140 920 TTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------SK--- 988 (1470)
T ss_pred HHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------CH---
Confidence 9999999999764 245899999999876444457799999999999999999999999876422110 00
Q ss_pred HcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCC
Q 001957 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (991)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPT 351 (991)
++....++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||
T Consensus 989 ---------------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 989 ---------------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 01123467899999999999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-CeEEEecCH----HHHHHHHHhc-CC-CCC
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFASM-GF-RCP 424 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~p 424 (991)
+|||+.++..+++.|+++++ .++|+|+++|||..+++++||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 99999999999999999976 5889999999999889999999999996 899999996 6899999997 66 499
Q ss_pred CCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchhhh---cCCccCcccccccccccccCCcH
Q 001957 425 KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL---RTPFDKSKSHRAALTTETYGVGK 501 (991)
Q Consensus 425 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~s~ 501 (991)
+..|||||++++++..... ....++.+.|+.+...++..+.+ ..+....+ ......+|..++
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~ 1191 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS---DLYFATQYSQST 1191 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCcc---ccccCccccCCH
Confidence 9999999999998643211 01235777777766554433222 22111111 111234688999
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHH-HHHHh
Q 001957 502 RELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSE-ISMTI 580 (991)
Q Consensus 502 ~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~-~~~~~ 580 (991)
|+|+++|++|+++.+|||+.++..|+++.+++|+++|++||+++.+..++++.+...|++|+++++..++...+ ++.+.
T Consensus 1192 ~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~ 1271 (1470)
T PLN03140 1192 WGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776666676677899999988877765544 45666
Q ss_pred hcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001957 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660 (991)
Q Consensus 581 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~ 660 (991)
.+|+||+|||.+++|++++|++|++++++|+.++.+++|.+|+|||+||.++++.||.|+++++++.+++.+++++++++
T Consensus 1272 ~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~ 1351 (1470)
T PLN03140 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSL 1351 (1470)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhhcCCccccccCCC-Ccchhhhh-hc
Q 001957 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQV-LK 738 (991)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~~~-~~~~G~~~-L~ 738 (991)
+|+..+|+.+++++++++++|+||++|+++||+||+|+||+||++|+++++++|||.+....|.+++. +...+.++ ++
T Consensus 1352 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1431 (1470)
T PLN03140 1352 TPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQD 1431 (1470)
T ss_pred CCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776654431 12345555 67
Q ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001957 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDP 776 (991)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~ 776 (991)
.+||.. .|.|.+++++++|+++|.+++++++++++.
T Consensus 1432 ~~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1432 HYGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred hcCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 788864 478999999999999999999999999975
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-86 Score=801.21 Aligned_cols=561 Identities=24% Similarity=0.364 Sum_probs=471.0
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.+++++|+||||.++||.+|||||+|||||||||++||||... +.++|+|++||++.++...+|.+|||.|+|.|.+++
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 3567899999999999999999999999999999999999754 578999999999998767789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||||.|.|+|.+|.+.. +.. ++....+|++++.++|++++|.+||+..
T Consensus 880 TVrESL~fSA~LRlp~~-------v~~------------------------~ek~~yVe~Vi~lleL~~~~daiVG~~G- 927 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKE-------VSD------------------------EEKYEYVEEVIELLELKEYADALVGLPG- 927 (1391)
T ss_pred chHHHHHHHHHHcCCCc-------CCH------------------------HHHHHHHHHHHHHhCchhhhhhhccCCC-
Confidence 99999999999875421 111 1233578999999999999999999887
Q ss_pred CCCChhHhHHHHHHHHHhcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-
Q 001957 322 RGISGGQKKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS- 399 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p-~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~- 399 (991)
.|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|+||||+..+++.||++++|+
T Consensus 928 ~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkr 1006 (1391)
T KOG0065|consen 928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKR 1006 (1391)
T ss_pred CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhc
Confidence 999999999999999999999 99999999999999999999999999998 799999999999999999999999997
Q ss_pred CCeEEEecCH----HHHHHHHHhcC-CCCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccc
Q 001957 400 DGQIVYQGPR----ELVLEFFASMG-FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKI 474 (991)
Q Consensus 400 ~G~iv~~G~~----~~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (991)
.|++||.||. +.+++||++.| .+||+..|||||++|+++...+.. ...++++.|+++..+++.
T Consensus 1007 GGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~ 1074 (1391)
T KOG0065|consen 1007 GGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRN 1074 (1391)
T ss_pred CCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHH
Confidence 5899999987 45778999987 899999999999999987532221 113788999988877766
Q ss_pred hhh---hcCCccCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 001957 475 SDE---LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (991)
Q Consensus 475 ~~~---l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~ 551 (991)
.++ ++.+... .........+|+.|.|.|++.|++|+++..||++.+...|++..++.|+++|+.||+++. ++
T Consensus 1075 ~e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~ 1149 (1391)
T KOG0065|consen 1075 KELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NV 1149 (1391)
T ss_pred HHHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cH
Confidence 544 3333333 112223445689999999999999999999999999999999999999999999999984 45
Q ss_pred ccccchhhHHHHHHHHHHHhHHH-HHHHHhhcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCc
Q 001957 552 TDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630 (991)
Q Consensus 552 ~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~ 630 (991)
++.+..+|++|.++++...+... ..+..-.++.+|||||..++|+..+|++|++++|+|+.++.+.+|.+++||++||.
T Consensus 1150 q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~ 1229 (1391)
T KOG0065|consen 1150 QGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFY 1229 (1391)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccch
Confidence 56667789999887765443333 33334468899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHH
Q 001957 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNA 710 (991)
Q Consensus 631 ~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~a 710 (991)
.++.+|+.|++..+++.+....++.++.+++||..+|..+.++++.++.+|+||++|++.||.||+|+||+||+.|-.++
T Consensus 1230 ~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~g 1309 (1391)
T KOG0065|consen 1230 WTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEG 1309 (1391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccccCC-------CCcchhhhhhcccC----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001957 711 IVANEFLGHSWKKFTQD-------SSETLGVQVLKSRG----FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (991)
Q Consensus 711 l~~nef~~~~~~~~~~~-------~~~~~G~~~L~~~~----~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (991)
++...+++..-.|...+ +..+.|+.+-..+| +..+..- ....+..+|.+.+.+++.+.++|.+
T Consensus 1310 li~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1310 LISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 99999998766664322 12345544444444 3322110 1111233355566666666666654
No 9
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.7e-83 Score=832.22 Aligned_cols=559 Identities=24% Similarity=0.354 Sum_probs=462.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.||+|||+.++||++++|+|||||||||||++|+|+.++....+|+|++||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3569999999999999999999999999999999999987321127999999999853 346789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|||.|+++++.+... .+ ++....++++++.+||.+++|+.||+.. .+
T Consensus 854 ~E~L~~~a~l~~~~~~-------~~------------------------~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-------SK------------------------SEKMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-------CH------------------------HHHHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 9999999876532110 00 0112346789999999999999998643 48
Q ss_pred CChhHhHHHHHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC-
Q 001957 324 ISGGQKKRVTTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG- 401 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~-vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G- 401 (991)
|||||||||+||++|+.+|+ +|||||||+|||+.++..|++.|+++++ .+.|+|+++|||...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999976 58899999999998888999999999987
Q ss_pred eEEEecCH----HHHHHHHHhcCC-CCCCCCCHHHHHHHhcCchhhhhhhhccCCCccccCHHHHHHHHHhccccccchh
Q 001957 402 QIVYQGPR----ELVLEFFASMGF-RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISD 476 (991)
Q Consensus 402 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (991)
+++|+|++ +++.+||++.|+ +||++.|||||++|+.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999976422110 01234445554433322221
Q ss_pred hh---cCCccCcccccccccccccCCcHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 001957 477 EL---RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (991)
Q Consensus 477 ~l---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~g~lf~~~~~~~~~~~~ 553 (991)
++ ..+.............++|..+++.|++.+++|.++..+||+.+.+.|+++.+++|+++|++||+++.+. .+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HH
Confidence 11 1110000000000112468889999999999999999999999999999999999999999999997653 34
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHhhcchh-hhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccc
Q 001957 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPV-FYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSN 632 (991)
Q Consensus 554 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~v-f~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~ 632 (991)
.+.++|++|+.+++..+.....++.++.++++ |+|||.+++|++++|++|++++++|+.++.+++|.+|+|||+||.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 55678999988776655544556666777776 49999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHH
Q 001957 633 AGR-------FFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLT 705 (991)
Q Consensus 633 ~~~-------ff~~~l~~~~~~~~~~sl~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~ 705 (991)
+.. ||.|+++++++.+++.+++.++++++++..+|+.+++++++++++|+||++++++||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCccccccC-------------------------------CC---C----cchhhhhhcccCcccccc
Q 001957 706 YAQNAIVANEFLGHSWKKFTQ-------------------------------DS---S----ETLGVQVLKSRGFFAHEY 747 (991)
Q Consensus 706 Y~~~al~~nef~~~~~~~~~~-------------------------------~~---~----~~~G~~~L~~~~~~~~~~ 747 (991)
|++++++.|||.+....|... +. | ...|.++|+.+++...
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~-- 1363 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYS-- 1363 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccc--
Confidence 999999999999987655321 00 1 3578999999888654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001957 748 WYWLGLGALFGFVLLLNFAYTLALTFL 774 (991)
Q Consensus 748 ~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (991)
.+|++++++++|++++ ++.++++.|.
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheE
Confidence 3699999999998877 7677777775
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-58 Score=561.17 Aligned_cols=258 Identities=25% Similarity=0.350 Sum_probs=201.5
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhh-hhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
..++..+.++.++++..+. +...- ..--+.-...+++|+|+++++.
T Consensus 315 ~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP---------------------------- 361 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP---------------------------- 361 (1228)
T ss_pred hccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC----------------------------
Confidence 4566667777777776554 11111 0111223468899999999873
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
+|+ ...||+|+|+.|++|+.+||+|||||||||++++|.++++|+ +|+|++||.++.+++. +..+|.|+|+
T Consensus 362 --sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 362 --SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred --CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 232 467999999999999999999999999999999999999999 9999999999988764 4689999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+ .++..||+||+.|+.. ....+...+ .. ...+..-.+..|++.+||
T Consensus 436 P-vlF~~tI~eNI~~G~~----dat~~~i~~---a~--------------------------k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 436 P-VLFATTIRENIRYGKP----DATREEIEE---AA--------------------------KAANAHDFILKLPDGYDT 481 (1228)
T ss_pred h-hhhcccHHHHHhcCCC----cccHHHHHH---HH--------------------------HHccHHHHHHhhHHhhcc
Confidence 8 5678899999999741 111111111 11 112223456678999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||++.+ +||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. .|+|+|+..| . -++.+.+|+
T Consensus 482 ~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaH-R-LStIrnaD~ 556 (1228)
T KOG0055|consen 482 LVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAH-R-LSTIRNADK 556 (1228)
T ss_pred cccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEee-e-hhhhhccCE
Confidence 9998766 499999999999999999999999999999999999999999999865 3566666544 3 355666999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+||+.|.|+|++.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999985
No 11
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-52 Score=545.11 Aligned_cols=208 Identities=26% Similarity=0.364 Sum_probs=179.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 46999999999999999999999999999999999999998 999999999985321 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|+|.|.++.++.... +.+..++++|+.+||++..|..+ +
T Consensus 1020 V~E~L~f~~~lkg~~~~----------------------------------~~~~~v~~lL~~vgL~~~~~~~~-----~ 1060 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSWE----------------------------------EAQLEMEAMLEDTGLHHKRNEEA-----Q 1060 (2272)
T ss_pred HHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 99999998776543110 01123567899999988777554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+++|++|+|||||+|||+.++..+++.|+++. .++|+|++ +|..+++..++|+|++|++|+
T Consensus 1061 ~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIlt-THdmdea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMS-THHMDEADLLGDRIAIISQGR 1137 (2272)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEE-ECCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999983 35665555 567889999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
++..|+++++.+.|.
T Consensus 1138 L~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEecCHHHHHHhcC
Confidence 999999999987764
No 12
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-47 Score=498.61 Aligned_cols=278 Identities=17% Similarity=0.275 Sum_probs=183.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCC-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
+.+...++|+.++++.+++ +.+ ..-+.+.+ ..+++|+||++.+..
T Consensus 349 ~~a~~a~~ri~~ii~~~~~-----~~~--~~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 394 (1466)
T PTZ00265 349 MKSLEATNSLYEIINRKPL-----VEN--NDDGKKLKDIKKIQFKNVRFHYDT--------------------------- 394 (1466)
T ss_pred HHHHHHHHHHHHHHcCCCC-----CCC--CCCCccCCCCCcEEEEEEEEEcCC---------------------------
Confidence 4566667777777766543 111 01112222 137999999988631
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CeeCCCccc---cceEEEEec
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN-GHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~~~~~~~---~~~~~yv~Q 233 (991)
+ ..+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|++| |+++.+... ++.++||+|
T Consensus 395 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q 467 (1466)
T PTZ00265 395 ---R-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQ 467 (1466)
T ss_pred ---C-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecc
Confidence 1 1235999999999999999999999999999999999999998 9999994 688765442 467999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc-CC---------Cc--hhhhhH-HHHHHHH----HcCCCCCCChHHHHHHHHhhhhhhh
Q 001957 234 HDNHIGEMTVRETLAFSARCQ-GV---------GT--RYEMLT-ELARREK----AAGIKPDPDIDVYMKAIATEGQEAN 296 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~-~~---------~~--~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (991)
++.+|+ .||+|||.++.... +. .. ..+... .-..+++ ...+....+.+..++..........
T Consensus 468 ~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 468 DPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred cccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 887775 69999999974210 00 00 000000 0000000 0000000000000000000000001
Q ss_pred HHHHHHHHHc-------CCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 297 VITDYYLKVL-------GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 297 ~~~~~~l~~l-------gL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
..+.++++.+ .|++.+||.||.. ...||||||||++|||||+.+|+||+|||||++||+.++..|.+.|+++
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 1223333333 5677889999854 6789999999999999999999999999999999999999999999997
Q ss_pred hhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 370 ~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+..++|+|++.|+ .+ ..+.||+|++|++|
T Consensus 626 ~~~~g~TvIiIsHr-ls-~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 626 KGNENRITIIIAHR-LS-TIRYANTIFVLSNR 655 (1466)
T ss_pred hhcCCCEEEEEeCC-HH-HHHhCCEEEEEeCC
Confidence 64346677666554 43 45799999999986
No 13
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-46 Score=378.37 Aligned_cols=222 Identities=26% Similarity=0.415 Sum_probs=189.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----cccceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~ 238 (991)
+..++|+|||++|++||+++|+|||||||||||+||.|+..++ +|+|.++|.++... ..++.+|+|+|+.++|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3467999999999999999999999999999999999999999 99999999876421 2357899999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 239 GEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
|++||.||+.++... ++.. ..+++....++|+.+||.+.+|
T Consensus 90 PHlTvleNv~lap~~v~~~~----------------------------------k~eA~~~A~~lL~~VGL~~ka~---- 131 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKLS----------------------------------KAEAREKALELLEKVGLADKAD---- 131 (240)
T ss_pred ccchHHHHHHhhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCchhhhh----
Confidence 999999999998532 2111 1112334566899999999887
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.++.+|||||||||+|||||+.+|+++++|||||+|||....++++.++++++ .|.|.|| ++|.+..+.+.+|||++
T Consensus 132 -~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMiv-VTHEM~FAr~VadrviF 208 (240)
T COG1126 132 -AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMII-VTHEMGFAREVADRVIF 208 (240)
T ss_pred -hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEE-EechhHHHHHhhheEEE
Confidence 56789999999999999999999999999999999999999999999999987 4655555 56789999999999999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
|++|+++..|+++++ |..|.+.-..+|+..+
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 999999999999876 4567777677777543
No 14
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-44 Score=413.95 Aligned_cols=213 Identities=30% Similarity=0.381 Sum_probs=182.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCeeCCCccc-------cceEEEEecCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (991)
..+++||||++.+||+++|+|.|||||||+.++|.|++++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4468999999997754432 26799999985
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+-|.+||.+.+.-..+.++...+ .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 456779999999887776643211 1122345678999999987654
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
++++++|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.++ .++.++.|+|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6799999999999999999999999999999999999999999999999999875 456666678899999999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||++|++|+.|++++++.
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999864
No 15
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.6e-43 Score=459.29 Aligned_cols=246 Identities=21% Similarity=0.273 Sum_probs=181.1
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
.+....++|+.+.++.+++. .++ ..........++|+|+++.++..
T Consensus 582 ~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~~--------------------------- 627 (1495)
T PLN03232 582 VNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDSK--------------------------- 627 (1495)
T ss_pred HHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCCC---------------------------
Confidence 45666777777776554320 000 00011112368999999886420
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI 238 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (991)
.++.+|+|+|++|++|+.++|+||+|||||||+++|.|.++|. +|.+. ..++.++||+|++.++
T Consensus 628 ----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~---------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 628 ----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV---------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred ----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE---------EecCcEEEEcCccccc
Confidence 1235899999999999999999999999999999999999997 77653 2356799999976655
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.||||||.|+... .. +.+.++....+. +. +.-.|++..||.||+
T Consensus 692 -~gTIreNI~fg~~~-----~~---------------------e~~~~vl~~~~L------~~--di~~Lp~Gd~T~IGe 736 (1495)
T PLN03232 692 -NATVRENILFGSDF-----ES---------------------ERYWRAIDVTAL------QH--DLDLLPGRDLTEIGE 736 (1495)
T ss_pred -cccHHHHhhcCCcc-----CH---------------------HHHHHHHHHhCC------HH--HHHhCCCCCCceecC
Confidence 67999999997421 00 111111110000 01 124578889999997
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+. ..||||||||++||||+.++|+|++||||||+||+.++.+|++. ++... .++|+|+.+|++ +....+|+|++
T Consensus 737 ~G-~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~ 811 (1495)
T PLN03232 737 RG-VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIIL 811 (1495)
T ss_pred CC-cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEE
Confidence 64 46999999999999999999999999999999999999999765 55432 467888877765 46788999999
Q ss_pred ecCCeEEEecCHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLE 414 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (991)
|++|+++++|+++++.+
T Consensus 812 L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 812 VSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EeCCEEEEecCHHHHHh
Confidence 99999999999999863
No 16
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-42 Score=457.36 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=157.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee-eEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS-GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~-G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.|++|++++|+||+|||||||+++|.|.+++. + |+|.+ ++.++||+|++.+ ++.|||
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l----------~~~Iayv~Q~p~L-fngTIr 696 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI----------RGTVAYVPQVSWI-FNATVR 696 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE----------cCeEEEEcCcccc-CCCCHH
Confidence 4899999999999999999999999999999999999998 8 89985 3469999997655 468999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|||.|+.... . +.+.+++...+. + -++-.|++..+|.||++. ..|
T Consensus 697 eNI~fg~~~d-----~---------------------e~y~~vl~a~~L------~--~di~~LP~Gd~T~IGe~G-~~L 741 (1622)
T PLN03130 697 DNILFGSPFD-----P---------------------ERYERAIDVTAL------Q--HDLDLLPGGDLTEIGERG-VNI 741 (1622)
T ss_pred HHHhCCCccc-----H---------------------HHHHHHHHHhCc------H--HHHHhCCCcccccccCCC-CCC
Confidence 9999974310 0 111111111100 1 113357888999999764 569
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||||+..+|+|++||||||+||+.++.+|++ +++... .++|+|+.+||+ +....+|+|++|++|++
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999998864 566543 467888877765 56788999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+++|+++++.+
T Consensus 818 ~e~Gt~~eL~~ 828 (1622)
T PLN03130 818 KEEGTYEELSN 828 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999999863
No 17
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-44 Score=379.55 Aligned_cols=225 Identities=29% Similarity=0.366 Sum_probs=195.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (991)
+...+|+|||+.|++|++.+|+|.||||||||++++.++..|+ +|+|.+||+++..+.. ++.+|+|+|+.+
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999998876542 478999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
++...||.||++|..++.+... .+...++.++|+.+||++.+|
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~--- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKAD--- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhc---
Confidence 9999999999999998766321 112345778999999998876
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.++.+|||||||||+|||||+.+|+||++|||||+|||.|+..|++.|+++-++.|.|+| .|+|-++-+-++||||.
T Consensus 137 --~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIv-lITHEm~Vvk~ic~rVa 213 (339)
T COG1135 137 --RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV-LITHEMEVVKRICDRVA 213 (339)
T ss_pred --cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEE-EEechHHHHHHHhhhhe
Confidence 567899999999999999999999999999999999999999999999999876655554 46677889999999999
Q ss_pred EecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 001957 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 438 (991)
+|++|+++++|+..++ |..|.+.-...|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999987 456777666777766543
No 18
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-41 Score=448.12 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=156.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+ ++.||+|
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g----------~i~yv~Q~~~l-~~~Ti~e 717 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG----------SVAYVPQQAWI-QNDSLRE 717 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC----------EEEEEcCCccc-cCCcHHH
Confidence 4899999999999999999999999999999999999998 99999987 48999998765 5689999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcccCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~~~~L 324 (991)
|+.|+.... .+. +.++.. .-.+.+.+ .+++..+|.+|+. ...|
T Consensus 718 NI~~g~~~~-----~~~---------------------~~~~~~---------~~~l~~~l~~~~~g~~t~ig~~-g~~L 761 (1522)
T TIGR00957 718 NILFGKALN-----EKY---------------------YQQVLE---------ACALLPDLEILPSGDRTEIGEK-GVNL 761 (1522)
T ss_pred HhhcCCccC-----HHH---------------------HHHHHH---------HhCCHHHHHhcCCCCCceecCC-CCCC
Confidence 999974210 000 000000 00011222 2456778999865 5679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh-hccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI-HINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~-~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||++||||+..+|++++||||||+||+.++..+.+.+.+.. ...++|+|+++|++ .. ...+|+|++|++|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~-l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SY-LPQVDVIIVMSGGKI 839 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hh-hhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999999986531 12456777766654 33 456999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+++|+++++.+
T Consensus 840 ~~~g~~~~l~~ 850 (1522)
T TIGR00957 840 SEMGSYQELLQ 850 (1522)
T ss_pred EeeCCHHHHHh
Confidence 99999998863
No 19
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=365.07 Aligned_cols=210 Identities=27% Similarity=0.383 Sum_probs=185.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (991)
.+.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++.+.+ .+|.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 456999999999999999999999999999999999999999 999999999998754 36899999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.||+.+-..+.+... ++.+..++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999999887765431 1223457889999999752 123578
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+++|||||+|||.+||||+.+|++|+||||+++||+.++.++.+.++++-+..++|+| .++|+.+|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTiv-fVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV-FVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEE-EEecCHHHHHhhhceEEEecC
Confidence 9999999999999999999999999999999999999999999999998776655555 567899999999999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|+++..+++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-43 Score=386.11 Aligned_cols=217 Identities=30% Similarity=0.445 Sum_probs=193.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc-ceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...++ |.+|+|+|+..+||+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999997775 89999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+.++... .+.+..++++.+.|+|++..| +.+++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~-----r~P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLN-----RKPLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHh-----cCcccCC
Confidence 9999998875421 112345778899999999887 4567999
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||++||||+.+|++++||||.|.||...+.++...|+++.+.. +++++.++|+..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999976544 4555556788899999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 406 QGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 45687777888753
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-43 Score=387.49 Aligned_cols=223 Identities=30% Similarity=0.429 Sum_probs=197.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (991)
...+|+|||+.|++||+++|+|||||||||||++|||+..|+ +|+|.+||++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 356999999999999999999999999999999999999999 9999999999998776 488999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.++...+ .+...+++++|+.++|++.++ +++.
T Consensus 94 V~~NVafGLk~~~~~~~---------------------------------~~i~~rv~e~L~lV~L~~~~~-----R~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLKK---------------------------------AEIKARVEEALELVGLEGFAD-----RKPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCCH---------------------------------HHHHHHHHHHHHHcCchhhhh-----hChh
Confidence 99999999984432110 112346788999999998765 6678
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.++.|.| .|.++|+..|+..++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT-~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT-FVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe-EEEEECCHHHHhhhccceEEccCCc
Confidence 999999999999999999999999999999999999999999999998866544 4556788999999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5678888899998754
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-42 Score=384.59 Aligned_cols=212 Identities=35% Similarity=0.484 Sum_probs=184.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (991)
.+.+|+||||.|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 467999999999999999999999999999999999999998 99999999988652 3357899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|+|.|.+++++.... .....++++++.+||++..+ ..+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~-----~~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKAN-----KKV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhC-----cch
Confidence 999999999998765310 01234678999999998444 445
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
++||+||||||+||.||+++|++|||||||+|||+.++.++++.|+++++..+.|++++ +|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis-sH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe-CCcHHHHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999987533455555 56778999999999999999
Q ss_pred eEEEecCHHHHHHHHHh
Q 001957 402 QIVYQGPRELVLEFFAS 418 (991)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (991)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776654
No 23
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.7e-43 Score=373.07 Aligned_cols=210 Identities=33% Similarity=0.435 Sum_probs=180.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (991)
+.||+|+||.+++|++++|+||||||||||||+|+|+++|. +|+|.++|+++.+...+ |.++||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999998 99999999999876543 7899999999889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|-+.++..-+.... . ...++....++..|+.+|+.+.++..+
T Consensus 92 tV~d~V~~GR~p~~~~~-----------------~-------------~~~~~D~~~v~~aL~~~~~~~la~r~~----- 136 (258)
T COG1120 92 TVYELVLLGRYPHLGLF-----------------G-------------RPSKEDEEIVEEALELLGLEHLADRPV----- 136 (258)
T ss_pred EEeehHhhcCCcccccc-----------------c-------------CCCHhHHHHHHHHHHHhCcHHHhcCcc-----
Confidence 99999999864321100 0 000111235778899999999988654
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||.||+||+++|++|+||||||.||...+.++++.+++++++.+.|+|++ .|+...+.++||++++|++|
T Consensus 137 ~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~v-lHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 137 DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV-LHDLNLAARYADHLILLKDG 215 (258)
T ss_pred cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECC
Confidence 58999999999999999999999999999999999999999999999987666666665 56788999999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
No 24
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=405.36 Aligned_cols=204 Identities=22% Similarity=0.331 Sum_probs=166.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 35999999999999999999999999999999999999998 9999999998754321 3569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.|+.......... .. .+....++++++.+||.+..|..+
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 139 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI------DW------------------------KKMYAEADKLLARLNLRFSSDKLV---- 139 (501)
T ss_pred CcHHHHhhhccccccccCcc------CH------------------------HHHHHHHHHHHHHcCCCCCccCch----
Confidence 99999999875321100000 00 001123466899999988776544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+.+++.++||+|++|++
T Consensus 140 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii-~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 140 -GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVY-ISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeC
Confidence 57999999999999999999999999999999999999999999999865 4555555 56777899999999999999
Q ss_pred CeEEEecC
Q 001957 401 GQIVYQGP 408 (991)
Q Consensus 401 G~iv~~G~ 408 (991)
|+++..|+
T Consensus 217 G~i~~~~~ 224 (501)
T PRK10762 217 GQFIAERE 224 (501)
T ss_pred CEEEEecC
Confidence 99987654
No 25
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.4e-41 Score=404.57 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+.+|+|||+.|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++||+|+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 459999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-
Q 001957 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC- 311 (991)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 311 (991)
. +++.+||+|++.+..... +.. +. +....++++++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999988654321 110 00 011235678899999752
Q ss_pred --ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 312 --ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 312 --~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
.| +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|+...+.
T Consensus 148 ~~~~-----~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~ 221 (529)
T PRK15134 148 KRLT-----DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLF-ITHNLSIVR 221 (529)
T ss_pred HHHh-----hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEE-EcCcHHHHH
Confidence 34 3456899999999999999999999999999999999999999999999987643555554 567778889
Q ss_pred hhcCeEEEecCCeEEEecCHHH
Q 001957 390 DLFDDIILLSDGQIVYQGPREL 411 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G~~~~ 411 (991)
++||+|++|++|++++.|++++
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999887654
No 26
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-41 Score=405.28 Aligned_cols=202 Identities=24% Similarity=0.313 Sum_probs=162.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECC-----------------------eeC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNG-----------------------HDM 219 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG-----------------------~~~ 219 (991)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|++ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999996 577 99999972 222
Q ss_pred C-------Cc------cccceEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHH
Q 001957 220 D-------EF------VPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285 (991)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (991)
. .. ..++.++|++|+ +.+++.+||+|++.|.....+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~----------~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG----------K---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH----------H----------------
Confidence 1 00 113568999997 678888999999998754322110 0
Q ss_pred HHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001957 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (991)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~ 365 (991)
+....++++++.+||++..+. .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 011235678999999876654 4568999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCH
Q 001957 366 LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409 (991)
Q Consensus 366 L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~ 409 (991)
|+++++..+.|+| .++|+...+.++||+|++|++|++++.|+.
T Consensus 211 l~~l~~~~g~tvi-ivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 211 LEEAVKASGISMV-LTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHHHhcCcEEE-EEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 9998764455554 456777788899999999999999876643
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-42 Score=360.05 Aligned_cols=195 Identities=28% Similarity=0.404 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|||++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999999 999999999983 4567899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+....+.... +....++++|+.+||.+..| .++++|
T Consensus 91 ~NV~l~l~~~~~~~~----------------------------------e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSKA----------------------------------EARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccchH----------------------------------hHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 999999987652210 11124677899999998876 678899
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--Ce
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~ 402 (991)
||||||||+|||||+.+|++|+||||+++||..|+..+.+.|.++.++.+.| |+.++|+.+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT-VLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999998865544 55567899999999999999998 45
Q ss_pred EE
Q 001957 403 IV 404 (991)
Q Consensus 403 iv 404 (991)
|.
T Consensus 211 i~ 212 (248)
T COG1116 211 IG 212 (248)
T ss_pred ee
Confidence 53
No 28
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-41 Score=402.39 Aligned_cols=208 Identities=25% Similarity=0.292 Sum_probs=168.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 24699999998889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++........... .... .+....++++++.+||.+..|+.+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~---~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~----- 143 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVN---IIDW------------------------REMRVRAAMMLLRVGLKVDLDEKV----- 143 (510)
T ss_pred cHHHHhhhcccccccccccc---ccCH------------------------HHHHHHHHHHHHHcCCCCCcccch-----
Confidence 99999987542100000000 0000 001123567899999987776554
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+..++.++||+|++|++|
T Consensus 144 ~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii-vsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVY-ISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 58999999999999999999999999999999999999999999999875 4555555 567788899999999999999
Q ss_pred eEEEecCHH
Q 001957 402 QIVYQGPRE 410 (991)
Q Consensus 402 ~iv~~G~~~ 410 (991)
++++.|+++
T Consensus 222 ~i~~~g~~~ 230 (510)
T PRK09700 222 SSVCSGMVS 230 (510)
T ss_pred EEeeecchh
Confidence 999887644
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.6e-42 Score=351.90 Aligned_cols=210 Identities=25% Similarity=0.366 Sum_probs=180.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (991)
.+.||+|||+.|++||+++|||||||||||||++|.|+++|+ +|+|.++|+++..... ++.+|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 456999999999999999999999999999999999999999 9999999999876542 3679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
|..|||+||+.|..+-+.. +.++ ..+..+..-|+..||... ++
T Consensus 97 FssltV~eNVafplre~~~---------lp~~------------------------~i~~lv~~KL~~VGL~~~----~~ 139 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK---------LPES------------------------LIRELVLMKLELVGLRGA----AA 139 (263)
T ss_pred ccccchhHhhheehHhhcc---------CCHH------------------------HHHHHHHHHHHhcCCChh----hh
Confidence 9999999999998764321 1111 112234455888999765 23
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.++.+||||++||+++||||+.+|++||+||||+||||.++..+.+.++++.+..+.|+++ ++|+.++++.++|+|++
T Consensus 140 ~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~-VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAV 218 (263)
T ss_pred hhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEE-EECChHHHHhhhceEEE
Confidence 46889999999999999999999999999999999999999999999999998766655555 56789999999999999
Q ss_pred ecCCeEEEecCHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLE 414 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (991)
|.+|+|+.+|+++++.+
T Consensus 219 L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 219 LADGKVIAEGTPEELLA 235 (263)
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999863
No 30
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-39 Score=426.73 Aligned_cols=198 Identities=26% Similarity=0.328 Sum_probs=151.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.++ ..||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 356999999999999999999999999999999999999998 9999863 4699999987654 6899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+... ..+...+ +.. ....+..++.+ ++..+|.+|. ....
T Consensus 738 ~enI~~~~~~-----~~~~~~~---------------------~~~------~~~l~~~l~~l--~~g~~t~i~~-~g~~ 782 (1560)
T PTZ00243 738 RGNILFFDEE-----DAARLAD---------------------AVR------VSQLEADLAQL--GGGLETEIGE-KGVN 782 (1560)
T ss_pred HHHHHcCChh-----hHHHHHH---------------------HHH------HhhhHHHHHHh--hccchHHhcC-CCCC
Confidence 9999985311 0000000 000 00112234443 3334566764 4678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++++|||||++||+.++..+++.+..... .++|+|+++|++ .. ...+|+|++|++|++
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HV-VPRADYVVALGDGRV 859 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999875432222 467777766554 33 468999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+++|+.+++.
T Consensus 860 ~~~G~~~~l~ 869 (1560)
T PTZ00243 860 EFSGSSADFM 869 (1560)
T ss_pred EEecCHHHHH
Confidence 9999998875
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=346.79 Aligned_cols=222 Identities=27% Similarity=0.412 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (991)
+++|+|||+.|+++++|||||||||||||||++|.++.+ +..+++|+|.|+|+++.+. ..++.+|+|+|.++.
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999999865 4567899999999998653 236889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
|| +|++||+.|+.+++|... ..+.+ +++..|+.-.|- +..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh-
Confidence 99 999999999999987643 11111 223333333332 122221
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++...+|||||+||++|||+|+-+|+||+||||||+|||.++..|-+++.++.+ .-|+|| ++|.+..+.+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIvi-VTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVI-VTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEE-EeCCHHHHHHHhHhhh
Confidence 234568999999999999999999999999999999999999999999999853 455555 4678899999999999
Q ss_pred EecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
++..|++|++|+.+++ |..|.++.+.||+.
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 9999999999999987 45688777777753
No 32
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=404.60 Aligned_cols=208 Identities=23% Similarity=0.254 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----------cc------c-cce
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------P-QRT 227 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------~~------~-~~~ 227 (991)
..+|+||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|..+.. .. . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999998 9999999975411 01 1 136
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
++||+|++ .+++.+||+||+.++.+.+ +... . +....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASR----------E------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHH
Confidence 89999986 5788899999999986542 2110 0 01123567889
Q ss_pred HcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecC
Q 001957 305 VLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (991)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~ 384 (991)
.+||++..+ .-+.++.+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++++..+.| |+.++|+
T Consensus 152 ~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~t-vi~itHd 228 (623)
T PRK10261 152 QVRIPEAQT--ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG-VIFITHD 228 (623)
T ss_pred HCCCCChhh--HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCE-EEEEcCC
Confidence 999964210 1134567899999999999999999999999999999999999999999999987644555 5556788
Q ss_pred CchhHhhcCeEEEecCCeEEEecCHHHH
Q 001957 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 385 ~~~~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
..++.++||+|++|++|++++.|+++++
T Consensus 229 l~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 229 MGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 8899999999999999999999987765
No 33
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=363.20 Aligned_cols=224 Identities=30% Similarity=0.456 Sum_probs=190.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe---eCCCccc-cceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (991)
...+++|||+.|+.||++||+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+-.+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456899999999999999999999999999999999999999 999999999 6655333 488999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+|||.+|+.|+.+++.... .+ .+.+..++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~p-----~~---------------------------~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKERP-----SE---------------------------AEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccCC-----Ch---------------------------hhHHHHHHHHHHHhcccchhh-----c
Confidence 9999999999998762111 01 112235677899999987665 7
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||++||||+..|++|+||||+++||..-+.++-+.|+++....+.|+|+ ++|+.+|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEec
Confidence 789999999999999999999999999999999999999999999999987654555555 5688999999999999999
Q ss_pred CCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
+|+|...||++++ |..|...-++.|+-++
T Consensus 213 ~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 213 QGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred CCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 9999999999998 4456666666665443
No 34
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=396.25 Aligned_cols=200 Identities=26% Similarity=0.349 Sum_probs=163.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 5999999999999999999999999999999999999998 999999999875432 135799999998889999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++......+. .. . .+....++.+++.+||++..+.. +
T Consensus 95 tv~~~l~~~~~~~~~~~----~~---~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGI----VN---R------------------------RLLNYEAREQLEHLGVDIDPDTP-----L 138 (501)
T ss_pred CHHHHHHhcccccccCC----CC---H------------------------HHHHHHHHHHHHHcCCCCCcCCc-----h
Confidence 99999998642110000 00 0 00112345688999998666544 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii-itHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILY-VSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865 4555555 556777899999999999999
Q ss_pred eEEEe
Q 001957 402 QIVYQ 406 (991)
Q Consensus 402 ~iv~~ 406 (991)
+++..
T Consensus 217 ~i~~~ 221 (501)
T PRK11288 217 RYVAT 221 (501)
T ss_pred EEEee
Confidence 98753
No 35
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-42 Score=350.09 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=182.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDN 236 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~ 236 (991)
..+++|+|||+.|++||+++|+|||||||||||++|+|+.+++ +|+|.+||.++.... .++.+|||+|+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3467999999999999999999999999999999999999998 999999998876543 2468999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+.+||.+|+..+..-+..- ...+ -++.+ ++.+..+-..|+.+|+.+.+-++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~-----~~sl------fglfs---------------k~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTST-----WRSL------FGLFS---------------KEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccchH-----HHHH------hCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHh
Confidence 999999999999886433210 0000 01100 111223445789999998887766
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+ .|||||+|||+|||+|+.+|++++.|||+++||+.++.++|+.|++++++.|.|+|+.+| ..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH-~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH-QVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec-hHHHHHHHHhhhe
Confidence 4 799999999999999999999999999999999999999999999999887888887765 5778999999999
Q ss_pred EecCCeEEEecCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (991)
-|++|+|+|+||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988754
No 36
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-41 Score=354.29 Aligned_cols=196 Identities=30% Similarity=0.430 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
.++|++||+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..... ++.+|||+|+.++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999999876542 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
+|.+||+||+.+.+...+...+ ......+.+++.+||.+..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999998776544210 01123566889999986655
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.++.+|||||||||+|||||+.+|++++.||||..||+.++..|++.|+++.++.+.|+|+++| + +++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH-d-~~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH-D-PELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC-C-HHHHHhCCEEEE
Confidence 24567999999999999999999999999999999999999999999999998766667776654 3 478889999999
Q ss_pred ecCCeE
Q 001957 398 LSDGQI 403 (991)
Q Consensus 398 L~~G~i 403 (991)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-39 Score=427.06 Aligned_cols=197 Identities=24% Similarity=0.383 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++ .||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g----------~iayv~Q~~~l~~-~Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG----------RISFSPQTSWIMP-GTIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC----------EEEEEeCCCccCC-ccHH
Confidence 45999999999999999999999999999999999999998 99999998 3899999987766 5999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.... ..++ .+. .++. ..+..++. +++..+|.||+. ...|
T Consensus 505 eNI~~g~~~~--~~~~---~~~------------------~~~~---------~L~~~l~~--l~~g~~t~vg~~-g~~L 549 (1490)
T TIGR01271 505 DNIIFGLSYD--EYRY---TSV------------------IKAC---------QLEEDIAL--FPEKDKTVLGEG-GITL 549 (1490)
T ss_pred HHHHhccccc--hHHH---HHH------------------HHHH---------hHHHHHHh--ccccccccccCc-CCCc
Confidence 9999974311 0000 000 0000 01112222 345567888865 5679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||||++.+|++++|||||+|||+.++..+.+ +++++. .++|+|+++|++. .+ ..+|+|++|++|++
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE-HL-KKADKILLLHEGVC 625 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH-HH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999997 466654 3677777776653 44 56999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+.+++..
T Consensus 626 ~~~g~~~~l~~ 636 (1490)
T TIGR01271 626 YFYGTFSELQA 636 (1490)
T ss_pred EEEcCHHHHHh
Confidence 99999988863
No 38
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-40 Score=394.78 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=164.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 3599999999999999999999999999999999999886 5 8999999998865332 24699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++......+... .. .+....++++++.+||.+..+ +
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~----~ 136 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRM------AY------------------------NAMYLRAKNLLRELQLDADNV----T 136 (500)
T ss_pred CCCcHHHHHHhhcccccccccc------CH------------------------HHHHHHHHHHHHHcCCCCCcc----c
Confidence 9999999998865321000000 00 001123566889999976542 1
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++|
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-itHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVY-ISHKLNEVKAVCDTICVI 214 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCcHHHHHHhCCEEEEE
Confidence 23468999999999999999999999999999999999999999999999865 4555554 567788999999999999
Q ss_pred cCCeEEEec
Q 001957 399 SDGQIVYQG 407 (991)
Q Consensus 399 ~~G~iv~~G 407 (991)
++|++++.|
T Consensus 215 ~~G~i~~~~ 223 (500)
T TIGR02633 215 RDGQHVATK 223 (500)
T ss_pred eCCeEeeec
Confidence 999998654
No 39
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=355.85 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=175.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC--CCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (991)
.+|+|||+.+++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+......+..+|||||.. ..-+.+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4999999999999999999999999999999999999998 999999999987765567899999964 34566899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|.+..+..-+.. ......+ +....+++.|+.+|+.+.+|..+| .
T Consensus 95 ~d~V~~g~~~~~g-----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~-----~ 139 (254)
T COG1121 95 KDVVLLGRYGKKG-----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIG-----E 139 (254)
T ss_pred HHHHHccCccccc-----ccccccH-------------------------HHHHHHHHHHHHcCchhhhCCccc-----c
Confidence 9999987432210 0000011 112457889999999999987776 7
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.++ |+ +|+.++|+...+.++||+|++|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~-tIl~vtHDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK-TVLMVTHDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC-EEEEEeCCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999764 54 45556889999999999999995 788
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 99999988753
No 40
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=340.85 Aligned_cols=210 Identities=30% Similarity=0.360 Sum_probs=184.0
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCC
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHI 238 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~ 238 (991)
.+...++++||||.++.||+++|+|||||||||+|++|++++.|+ +|.|++||.+..+.+ .++.+|.++.+..++
T Consensus 11 y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY 87 (245)
T COG4555 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87 (245)
T ss_pred ccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChh
Confidence 334455999999999999999999999999999999999999999 999999999875433 358899999888899
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
..||++|||.|.+++.+.. +. +.+..++++.+.|+|.+|.|+.+|
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~----------~~------------------------~~kari~~l~k~l~l~~~~~rRv~- 132 (245)
T COG4555 88 ARLTARENLKYFARLNGLS----------RK------------------------EIKARIAELSKRLQLLEYLDRRVG- 132 (245)
T ss_pred hhhhHHHHHHHHHHHhhhh----------hh------------------------HHHHHHHHHHHHhChHHHHHHHHh-
Confidence 9999999999999887542 11 122356778999999999999887
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .++++|.+ +|.++|+..+||+|++|
T Consensus 133 ----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFS-SH~m~EvealCDrvivl 206 (245)
T COG4555 133 ----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFS-SHIMQEVEALCDRVIVL 206 (245)
T ss_pred ----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEe-cccHHHHHHhhheEEEE
Confidence 6999999999999999999999999999999999999999999999743 46666655 67899999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
++|++|+.|+++.+..
T Consensus 207 h~Gevv~~gs~~~l~~ 222 (245)
T COG4555 207 HKGEVVLEGSIEALDA 222 (245)
T ss_pred ecCcEEEcCCHHHHHH
Confidence 9999999999988764
No 41
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-41 Score=394.18 Aligned_cols=227 Identities=22% Similarity=0.392 Sum_probs=188.6
Q ss_pred CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 001957 115 PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTL 194 (991)
Q Consensus 115 p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTL 194 (991)
.+..|+|+|+++.|.. + +...||||+||+|+|||.+||+||||+||||+
T Consensus 462 ~~G~IeF~~VsFaYP~------------------------------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTi 510 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPT------------------------------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTI 510 (716)
T ss_pred ccceEEEEEeeeecCC------------------------------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHH
Confidence 3678999999998742 2 34679999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHH
Q 001957 195 LLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (991)
Q Consensus 195 L~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 271 (991)
.++|-++|+|+ +|+|++||+|+.++++ ++.+|+|.|++.+| .-||+|||.|+.. ....++..+..+.
T Consensus 511 asLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~----~~t~e~i~~AAk~-- 580 (716)
T KOG0058|consen 511 ASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD----NATDEEIEAAAKM-- 580 (716)
T ss_pred HHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC----CCCHHHHHHHHHH--
Confidence 99999999999 9999999999988775 47899999988765 5799999999864 1111111111111
Q ss_pred HcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCC
Q 001957 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (991)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPT 351 (991)
.+..-.+.++++.+||.||++. .+||||||||++|||||++||+||||||.|
T Consensus 581 ---------------------------ANah~FI~~~p~gY~T~VGEkG-~qLSGGQKQRIAIARALlr~P~VLILDEAT 632 (716)
T KOG0058|consen 581 ---------------------------ANAHEFITNFPDGYNTVVGEKG-SQLSGGQKQRIAIARALLRNPRVLILDEAT 632 (716)
T ss_pred ---------------------------hChHHHHHhCccccccccCCcc-ccccchHHHHHHHHHHHhcCCCEEEEechh
Confidence 1112346789999999999654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||+++...+.+.|.++.+ +.|+++. . |+-++.+.+|+|+++++|++++.|+++|+++
T Consensus 633 SALDaeSE~lVq~aL~~~~~--~rTVlvI-A-HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 633 SALDAESEYLVQEALDRLMQ--GRTVLVI-A-HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhcchhhHHHHHHHHHHhhc--CCeEEEE-e-hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999998764 4565554 3 3568999999999999999999999999974
No 42
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.4e-40 Score=370.09 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=177.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876432 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.|.....+... . +....+.++++.+||.+..|.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~v~e~l~~vgL~~~~~~---- 136 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------D------------------------EIKRKVTELLALVGLGDKHDS---- 136 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhC----
Confidence 99999999999765432210 0 011235678999999887764
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..+.|+|+ ++|..+.+.++||+|++|
T Consensus 137 -~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiil-iTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 137 -YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 456899999999999999999999999999999999999999999999987644666555 566788999999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
No 43
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.3e-40 Score=372.50 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=178.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 35899999999999999999999999999999999999998 9999999999875443 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+++
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~-----~~~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERK-----YPGQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhC-----Chhh
Confidence 999999876432110 0012246778999999887764 5578
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+..+.|+|++ +|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v-THd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV-THDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876445555554 5677899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999885
No 44
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-40 Score=372.58 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=177.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.+||.++....+ ++.++||+|+..++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876543 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+++
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~-----~~~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDR-----KPRE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhC-----Chhh
Confidence 999999876432110 0011245678999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|+|||||++||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY-VTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999987644555555 55677899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-40 Score=370.73 Aligned_cols=218 Identities=25% Similarity=0.380 Sum_probs=184.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 34899999999999999999999999999999999999998 9999999999876544 3789999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++.... +....++++++.+||.+..| ++++.
T Consensus 96 ~eNi~~~l~~~~~~~~----------------------------------~~~~~v~~~l~~~gl~~~~~-----r~~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPKE----------------------------------ERKQRVKEALELVDLAGFED-----RYVDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhc-----CChhh
Confidence 9999998765432110 01224567899999987765 45678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644555555 56777899999999999999999
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 404 VYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
+..|+++++.. .|...-.+.|+
T Consensus 216 ~~~g~~~~~~~--------~p~~~~~a~~~ 237 (351)
T PRK11432 216 MQIGSPQELYR--------QPASRFMASFM 237 (351)
T ss_pred EEEcCHHHHHh--------CCCchHHHHhc
Confidence 99999998742 35544455554
No 46
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.9e-40 Score=371.25 Aligned_cols=206 Identities=23% Similarity=0.345 Sum_probs=177.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee--eEEEECCeeCCCccc-cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~--G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..++|.+|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 5999999999999999999999999999999999999998 8 999999999865443 467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.++... .+....++++++.+||++..|. .++
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~-----~~~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAH-----LPA 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhC-----Chh
Confidence 9999999876543210 0011245678999999887765 456
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764323444555677889999999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999884
No 47
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.4e-40 Score=397.05 Aligned_cols=258 Identities=26% Similarity=0.364 Sum_probs=207.9
Q ss_pred HHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.|+.+...+|+..+++.++|.-..+. ....+....+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 46778888999998888877221110 1223334678999999999842
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
....+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|++||.+++..++ ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1125999999999999999999999999999999999999998 9999999999987654 5899999995
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+ ++++.||+||+.++.- . .+.+..+++....+. .-.+..++..+||
T Consensus 556 ~-~Lf~gSI~eNi~l~~p----~---------------------~~~e~i~~A~~~ag~--------~~fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGNP----E---------------------ATDEEIIEAAQLAGA--------HEFIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCCC----C---------------------CCHHHHHHHHHHhCc--------HHHHHhccccccc
Confidence 5 6678899999998741 1 111222222222211 1235679999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||+ +..+||||||||++|||||+++|+||+||||||+||+.+...|++.|+++. .++|+|+..|. ..+.+.||+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHR--l~ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHR--LSTIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEcc--chHhhhccE
Confidence 9995 566899999999999999999999999999999999999999999999975 45777776654 478999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||++|+++.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
No 48
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-39 Score=370.30 Aligned_cols=218 Identities=28% Similarity=0.364 Sum_probs=185.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+||.+||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999999875443 47799999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.+.++... . +....++++++.+||++..|. ++.+|
T Consensus 105 eNi~~~l~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~p~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------A------------------------EITPRVMEALRMVQLEEFAQR-----KPHQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhC-----ChhhC
Confidence 99999875432210 0 011235678999999887764 45689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+|||+|+.+|++|+||||++|||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987654555555 567788999999999999999999
Q ss_pred EecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 405 ~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
..|+++++. ..|....+|+|+-
T Consensus 225 ~~g~~~~i~--------~~p~~~~~a~~~g 246 (375)
T PRK09452 225 QDGTPREIY--------EEPKNLFVARFIG 246 (375)
T ss_pred EEcCHHHHH--------hCcccHHHHHhcC
Confidence 999999874 3566666666653
No 49
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.9e-39 Score=360.83 Aligned_cols=206 Identities=27% Similarity=0.384 Sum_probs=177.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|+..+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999986432 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|.++.++.... +....++++++.++|.+.+++.+ +
T Consensus 97 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSAA----------------------------------AARALVPPLLEFAKLENKADAKV-----G 137 (306)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcCch-----h
Confidence 99999987765432110 01123466889999998888766 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999864 45565555 567789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 50
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-39 Score=383.90 Aligned_cols=194 Identities=22% Similarity=0.226 Sum_probs=158.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCC--C--
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNH--I-- 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~--~-- 238 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+... +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4999999999999999999999999999999999999998 999999998764322 12458999997532 1
Q ss_pred ----CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 239 ----GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
..+||+|++.+... ....++.+++.+||++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhhC
Confidence 14677777653210 01124567889999877665
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+...+.++||+
T Consensus 132 ~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii-~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 R-----FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVL-VLNRFDEIPDFVQF 204 (490)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEE-EeCCHHHHHhhCCE
Confidence 4 458999999999999999999999999999999999999999999999865 4556555 45677889999999
Q ss_pred EEEecCCeEEEecCHHH
Q 001957 395 IILLSDGQIVYQGPREL 411 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (991)
|++|++|++++.|++++
T Consensus 205 v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 205 AGVLADCTLAETGEREE 221 (490)
T ss_pred EEEEECCEEEEeCCHHH
Confidence 99999999998876543
No 51
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=347.42 Aligned_cols=207 Identities=29% Similarity=0.422 Sum_probs=179.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC----CccccceEEEEecC-CCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQH-DNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~----~~~~~~~~~yv~Q~-d~~~~ 239 (991)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.++. ....++.+|||+|+ |..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 46999999999999999999999999999999999999998 999999999875 22346889999999 56688
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.-||.|.++|+....+.... +...+++.+|+.+||.+.+| +
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhcc-----C
Confidence 89999999999887654310 12235678899999998876 5
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+. ++.+||.++|+.+.+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999764 34444555788999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
No 52
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5e-39 Score=364.59 Aligned_cols=210 Identities=28% Similarity=0.379 Sum_probs=176.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|++||+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999999865433 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+........ .+ .+....++++++.++|++..|. ++..
T Consensus 92 ~eni~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRERP------NA------------------------AAIKAKVTQLLEMVQLAHLADR-----YPAQ 136 (353)
T ss_pred HHHHHhhhhhcccccCC------CH------------------------HHHHHHHHHHHHHcCCchhhhC-----Chhh
Confidence 99999986542100000 00 0011245678999999877664 4578
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+ +.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ti-i~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE-EEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876435554 4456788899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
No 53
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=334.76 Aligned_cols=205 Identities=27% Similarity=0.325 Sum_probs=177.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCC--CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (991)
.+|+|||++|.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998776532 357899999985 5789
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||++.|.-+.+..+.... ...+.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~~------------------------------------~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSKS------------------------------------QQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccHH------------------------------------HHHHHHHHHHcCCCHHH----Hhc
Confidence 99999999887765433210 11245689999998643 247
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||+|||||+.+|++|++|||||+||+....+|++.|.++.+.. +.+++.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 788999999999999999999999999999999999999999999999998754 4555667789999999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
No 54
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-39 Score=345.10 Aligned_cols=207 Identities=29% Similarity=0.374 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 35999999999999999999999999999999999999998 999999999876432 245799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++......... . +....++++++.+||.+..++.
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 133 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------E------------------------EIREIVLEKLEAVGLRGAEDLY--- 133 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------H------------------------HHHHHHHHHHHHcCCchhhcCC---
Confidence 999999999987542110000 0 0112345678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|++ +|..+++.++||+|++|
T Consensus 134 --~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v-sH~~~~~~~~~d~v~~l 210 (235)
T cd03261 134 --PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV-THDLDTAFAIADRIAVL 210 (235)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhcCEEEEE
Confidence 458999999999999999999999999999999999999999999999875335565555 56677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987763
No 55
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-39 Score=320.47 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=174.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
.+++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.....+ +|-+++++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467899999999999999999999999999999998 9999999999876655 478999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
++.. ++-+. .+ .....++.++..+||..+.+ +.+.+|||||
T Consensus 94 LGl~---P~LkL---~a----------------------------~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL---NA----------------------------EQREKVEAAAAQVGLAGFLK-----RLPGELSGGQ 134 (231)
T ss_pred ccCC---ccccc---CH----------------------------HHHHHHHHHHHHhChhhHhh-----hCccccCchH
Confidence 9864 21110 00 01124567888999998876 4556899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||++||+|+++-+||+||||+|+||+.-+.++...+.+++.+++.|+++.+||| +++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999999988777887776665 58999999999999999999999
Q ss_pred HHHHH
Q 001957 409 RELVL 413 (991)
Q Consensus 409 ~~~~~ 413 (991)
.++.+
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98765
No 56
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=363.77 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=176.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||.
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 5899999999999999999999999999999999999998 9999999999865443 47899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.+.++... .+....++++++.+||.+..| +.+.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~-----~~~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAK-----RKPHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-----CChhhC
Confidence 99999876432210 001124567899999987665 455789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999987655555555 567788999999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
No 57
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=329.91 Aligned_cols=207 Identities=24% Similarity=0.387 Sum_probs=175.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (991)
+.+||++||+.+++||+++|+|||||||||||++|+|..++. +|+|.++|++++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 467999999999999999999999999999999999999998 99999999999887653 56899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (991)
.|||+|||..++...... +.. ....|.+.+.| .|.+..+..-|
T Consensus 92 ~LTVeENL~~g~~~~~~~-----------~~~------------------------~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 92 RLTVEENLLLGAYARRDK-----------EAQ------------------------ERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred hCcHHHHHhhhhhccccc-----------ccc------------------------cccHHHHHHHChhHHHHhcCccc-
Confidence 999999999986532110 000 00023344444 35555555544
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++++.+. ++.+|+.+.|....+.+++|+.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEE
Confidence 79999999999999999999999999999999999999999999999764 4467777899999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
.+|+|++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998863
No 58
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=8.4e-39 Score=362.32 Aligned_cols=207 Identities=22% Similarity=0.307 Sum_probs=178.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.|+.+..+.... +....+.++++.+||++..++
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~vgL~~~~~~-- 125 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQ----------------------------------ERKEKALELLKLVGLEEYEHR-- 125 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHhcCCchhhhC--
Confidence 99999999999998765432100 011235678999999876664
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|+ ++|...++..++|+|+
T Consensus 126 ---~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~-vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 126 ---YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF-ITHDLDEAIRIGDRIV 201 (363)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEE
Confidence 456899999999999999999999999999999999999999999999986544555555 5677889999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|+++..|+++++.
T Consensus 202 vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEeCCEEEeeCCHHHHH
Confidence 99999999999999875
No 59
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=363.29 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=175.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+..+... . +....++++++.+||++..|.. +.+
T Consensus 93 ~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~lgL~~~~~~~-----~~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------E------------------------EINQRVNQVAEVLQLAHLLDRK-----PKA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCC-----hhh
Confidence 999999865432210 0 0112356789999998776654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++.+..+.|+|++ +|+..++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~v-THd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV-THDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876445555554 5677799999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 60
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8e-37 Score=368.31 Aligned_cols=219 Identities=23% Similarity=0.282 Sum_probs=162.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++.+||.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcHH
Confidence 45999999999999999999999999999999999999998 999999752 4689999999888999999
Q ss_pred HHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHH-------HHHHh-hhhhhhHHHHHHHHHcCCccccccc
Q 001957 245 ETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYM-------KAIAT-EGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 245 E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
||+.++... .+. .....+...... .++.+.+... +.... ...+....++.+++.+||+. .|.
T Consensus 89 e~l~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~- 159 (556)
T PRK11819 89 ENVEEGVAEVKAA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA- 159 (556)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC-
Confidence 999986421 000 000000000000 0000000000 00000 00112345677899999953 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+| .++|+..++.+++|+|
T Consensus 160 ----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvi-iisHd~~~~~~~~d~i 230 (556)
T PRK11819 160 ----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVV-AVTHDRYFLDNVAGWI 230 (556)
T ss_pred ----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEE-EEeCCHHHHHhhcCeE
Confidence 44689999999999999999999999999999999999999999999875 24554 4567788999999999
Q ss_pred EEecCCeEE-EecCHHHH
Q 001957 396 ILLSDGQIV-YQGPRELV 412 (991)
Q Consensus 396 ilL~~G~iv-~~G~~~~~ 412 (991)
++|++|+++ +.|+.++.
T Consensus 231 ~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999986 88876654
No 61
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.7e-39 Score=318.83 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=175.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~ 237 (991)
...+|+||||.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++.... .+|.+|+|+|+.-+
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccc
Confidence 356999999999999999999999999999999999999999 999999999987543 25889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||++|+.+..|...+ +.+..+.++|+..||.+.++
T Consensus 91 L~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~rV~~~L~~VgL~~k~~---- 132 (223)
T COG2884 91 LPDRTVYENVALPLRVIGKPPR----------------------------------EIRRRVSEVLDLVGLKHKAR---- 132 (223)
T ss_pred cccchHhhhhhhhhhccCCCHH----------------------------------HHHHHHHHHHHHhccchhhh----
Confidence 9999999999999987764321 12345677899999998876
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..+.+|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++-+ .|+|++++ +|+..-+..+--+++.
T Consensus 133 -~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~A-THd~~lv~~~~~rvl~ 209 (223)
T COG2884 133 -ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMA-THDLELVNRMRHRVLA 209 (223)
T ss_pred -cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEE-eccHHHHHhccCcEEE
Confidence 45679999999999999999999999999999999999999999999999854 56666665 5677777888889999
Q ss_pred ecCCeEEEecC
Q 001957 398 LSDGQIVYQGP 408 (991)
Q Consensus 398 L~~G~iv~~G~ 408 (991)
|++|+++....
T Consensus 210 l~~Grl~~d~~ 220 (223)
T COG2884 210 LEDGRLVRDES 220 (223)
T ss_pred EeCCEEEeccc
Confidence 99999997654
No 62
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-39 Score=361.74 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=190.2
Q ss_pred cCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCC
Q 001957 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (991)
Q Consensus 110 ~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGs 189 (991)
..+..|.-.|+|+|+++++. ++++||++|||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677888899999999873 123499999999999999999999999
Q ss_pred cHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHH
Q 001957 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (991)
Q Consensus 190 GKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (991)
||||+||+|.++++ . +|+|.+||+++++... ++.+||||| |.++++-||.+|+.++-. ...++..-+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQ-d~~LFndTIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQ-DSVLFNDTILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCC-cccccchhHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999998 5 9999999999987653 578999999 566778899999999742 2222222222
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeE
Q 001957 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (991)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLl 346 (991)
. |.+++ + --+..|++.++|.||+++. -|||||||||++||+++.+|+|++
T Consensus 461 ~---k~a~~------------------------h--d~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 C---KRAGL------------------------H--DVISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred H---HHcCc------------------------H--HHHHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 2 22221 0 1245689999999997665 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 347 lDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|||||.||+.|..++++.++... .++|+|+..|. ..+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~--l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHR--LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEec--chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999843 57788887754 36788899999999999999999999985
No 63
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=334.04 Aligned_cols=221 Identities=28% Similarity=0.403 Sum_probs=186.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+...+++|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++++...++ .-++.-+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 5678999999999999999999999999999999999999999 99999999999887764 3567889999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.|||.||+..++..+..-. ..+. ..+.. .+..+.......+|+.+||.+.+|+..|
T Consensus 92 ~~lTVlENv~va~~~~~~~~--~~l~-~~~~~-------------------~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLS--GLLG-RPRAR-------------------KEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhh--hhhc-cccch-------------------hhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 99999999999876542100 0000 00000 0001122345678999999999998876
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.|.|++..++.+||||+||
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 6999999999999999999999999999999999999999999999876 45577777899999999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999863
No 64
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-38 Score=357.63 Aligned_cols=206 Identities=27% Similarity=0.355 Sum_probs=175.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999998 9999999999865432 35799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~--- 137 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------A------------------------EIKARVTELLELVGLSDKADRY--- 137 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC---
Confidence 99999999999765432210 0 0112346688999998776654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|...++.++||+|++|
T Consensus 138 --~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv-tH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 138 --PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI-THEMDVVKRICDRVAVI 214 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999876445565554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
No 65
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.6e-38 Score=355.81 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999876432 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|....++.... +....++++++.++|.+..++.+ +
T Consensus 131 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~ll~~~~L~~~~~~~~-----~ 171 (340)
T PRK13536 131 VRENLLVFGRYFGMSTR----------------------------------EIEAVIPSLLEFARLESKADARV-----S 171 (340)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhCCCh-----h
Confidence 99999986654432100 00113456788999998887665 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45665555 567889999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++++|+++++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
No 66
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.7e-38 Score=354.61 Aligned_cols=206 Identities=28% Similarity=0.373 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 2357999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.+++++.... .....++++++.+||.+..|+.+ +
T Consensus 83 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKD----------------------------------EAEERAEELLELFELGEAADRPV-----G 123 (302)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCChhHhCCch-----h
Confidence 99999997765432100 01123567899999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~-sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45565554 567789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
No 67
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=366.05 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=162.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|+..+++.+||+|
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCCcHHH
Confidence 5999999999999999999999999999999999999998 999999873 35899999988889999999
Q ss_pred HHHHHHH-hcCCCchhhhhHHHHHHHHHcCCC--CCCC---hHHHHHH-HHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 246 TLAFSAR-CQGVGTRYEMLTELARREKAAGIK--PDPD---IDVYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 246 ~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
++.++.. .... .. ......... ...+ .+..... ....+.+....++.+++.+||++..+ +
T Consensus 84 ~l~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~ 150 (530)
T PRK15064 84 TVIMGHTELWEV------KQ---ERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----Y 150 (530)
T ss_pred HHHHhhHHHHHH------HH---HHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----c
Confidence 9988631 1000 00 000000000 0000 0000000 00001112345678899999975332 1
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .+.|+|+ ++|+...+.++||+|++|
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiii-vsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMII-ISHDRHFLNSVCTHMADL 225 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEE-EeCCHHHHHhhcceEEEE
Confidence 23468999999999999999999999999999999999999999999864 3455544 567788899999999999
Q ss_pred cCCeE-EEecCHHHHH
Q 001957 399 SDGQI-VYQGPRELVL 413 (991)
Q Consensus 399 ~~G~i-v~~G~~~~~~ 413 (991)
++|++ ++.|+.++.+
T Consensus 226 ~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 226 DYGELRVYPGNYDEYM 241 (530)
T ss_pred eCCEEEEecCCHHHHH
Confidence 99999 5888877654
No 68
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-36 Score=365.37 Aligned_cols=220 Identities=22% Similarity=0.265 Sum_probs=161.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+++ ...++||+|++.+++.+||+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP--------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC--------CCEEEEEeccCCCCCCCcHH
Confidence 35999999999999999999999999999999999999998 99999975 24699999999888999999
Q ss_pred HHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCCh-------HHHHHHHHhhh-hhhhHHHHHHHHHcCCccccccc
Q 001957 245 ETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDI-------DVYMKAIATEG-QEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 245 E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
||+.++... .+. ..+......... .++.+. ....+.....+ ......++++++.+||+. .|.
T Consensus 87 e~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~- 157 (552)
T TIGR03719 87 ENVEEGVAEIKDA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA- 157 (552)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-
Confidence 999986421 000 000000000000 000000 00000111011 111234567888999953 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ ++|+|+ ++|+...+..+||+|
T Consensus 158 ----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIi-isHd~~~~~~~~d~v 228 (552)
T TIGR03719 158 ----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVA-VTHDRYFLDNVAGWI 228 (552)
T ss_pred ----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEE-EeCCHHHHHhhcCeE
Confidence 44689999999999999999999999999999999999999999999874 245444 567888999999999
Q ss_pred EEecCCeEE-EecCHHHHH
Q 001957 396 ILLSDGQIV-YQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv-~~G~~~~~~ 413 (991)
++|++|+++ +.|+.++..
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 999999976 778776553
No 69
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=335.17 Aligned_cols=200 Identities=29% Similarity=0.430 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 35999999999999999999999999999999999999998 9999999998764322 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.++....+... . .....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------A------------------------EIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999998754321100 0 00112456788999987666544 57
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|...++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY-VTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987534556555 45667788999999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 70
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-38 Score=348.08 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=176.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCC-CC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999986532 2467999999853 45
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--ccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (991)
+.+||+||+.|+....+... .+....++++++.+||. +..|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~--- 139 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLSE----------------------------------EEIENRVKRAMNIVGLDYEDYKD--- 139 (287)
T ss_pred ccccHHHHHHhHHHHCCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhcc---
Confidence 57899999998754322110 00112356789999996 4444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+ ++|...++.++||+|+
T Consensus 140 --~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 140 --KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL-VSHSMEDVAKLADRII 216 (287)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEE
Confidence 4457899999999999999999999999999999999999999999999987643555555 4566778889999999
Q ss_pred EecCCeEEEecCHHHHHH---HHHhcCCCCCC
Q 001957 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (991)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23345665554
No 71
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-36 Score=374.80 Aligned_cols=194 Identities=33% Similarity=0.468 Sum_probs=157.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+|||++|++|+++||+||-|||||+||.+|.|.++.. +|+|.++|. ++||+|++.+ .+.|||||
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI-~ngTvreN 601 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWI-QNGTVREN 601 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHh-hCCcHHHh
Confidence 899999999999999999999999999999999999886 999999985 8999998764 57899999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
|.|+.... ..+|+. ..++-+. +.-|+ -|+.+-.|.||++++ .|||
T Consensus 602 ILFG~~~d--~~rY~~---------------------Vi~aC~L---------~~Dle--~Lp~GD~TeIGErGi-nLSG 646 (1381)
T KOG0054|consen 602 ILFGSPYD--EERYDK---------------------VIKACAL---------KKDLE--ILPFGDLTEIGERGI-NLSG 646 (1381)
T ss_pred hhcCcccc--HHHHHH---------------------HHHHccC---------HhHHh--hcCCCCcceecCCcc-CCcH
Confidence 99986431 011110 0111100 00122 256677899997766 5999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||+++|||+-++++|++||.|.|++|+++...|.+ +++.+. .++|+|+.+|| -+....+|.|++|++|+|+.
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQ--LQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCc--hhhhhhCCEEEEecCCeEec
Confidence 99999999999999999999999999999999999885 554432 46788877764 57888999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+.+|++
T Consensus 723 ~Gty~el~ 730 (1381)
T KOG0054|consen 723 SGTYEELL 730 (1381)
T ss_pred ccCHHHHH
Confidence 99999998
No 72
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-38 Score=334.86 Aligned_cols=205 Identities=29% Similarity=0.373 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35999999999999999999999999999999999999998 999999998875321 2357899999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..+..+... . +....++++++.+||++..|+.+ .
T Consensus 90 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------A------------------------ERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999998764432110 0 01123467889999987766544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+ ++|..+++.+++|++++|.+|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL-TTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999987633555555 5667778999999999999999
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987753
No 73
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.2e-38 Score=349.28 Aligned_cols=206 Identities=29% Similarity=0.399 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999998 999999999875322 2467999999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... . +....++.+++.++|.+..++.+ +
T Consensus 94 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~l~~~~~~~~-----~ 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADVRV-----A 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhHhcCch-----h
Confidence 9999987654332110 0 00112456788999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~-sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 45565554 566779999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-37 Score=337.15 Aligned_cols=209 Identities=31% Similarity=0.403 Sum_probs=171.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 35799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.++....+...+. +. .+....++.+++.+||.+..++. +..|
T Consensus 93 e~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERP-------------------PE-----------AEIRAKVHELLKLVQLDWLADRY-----PAQL 137 (239)
T ss_pred HHHhhhhhhccccccC-------------------CH-----------HHHHHHHHHHHHHcCChhhhhcC-----hhhC
Confidence 9999875432110000 00 00112345678999997766654 4589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++. |...++.+++|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT-HDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999998764456666654 5567889999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
No 75
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-38 Score=347.14 Aligned_cols=218 Identities=24% Similarity=0.350 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999999998 99999999987531 1235799999985 3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++..||+||+.|+....+... .+....++++++.+||. +..++
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLAR- 141 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhC-
Confidence 4556899999998764332110 00112356789999996 44554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv 216 (290)
T PRK13634 142 ----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQI 216 (290)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999876445555554 56777899999999
Q ss_pred EEecCCeEEEecCHHHHH---HHHHhcCCCCCC
Q 001957 396 ILLSDGQIVYQGPRELVL---EFFASMGFRCPK 425 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 425 (991)
++|++|++++.|+++++. ..+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999988874 234444555444
No 76
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-38 Score=346.90 Aligned_cols=224 Identities=27% Similarity=0.371 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1235799999985 34
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
++..||.|++.|+....+... . +....+.++++.+||. ...+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~--- 139 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------E------------------------KAEKIAAEKLEMVGLADEFWE--- 139 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhcc---
Confidence 555799999999865432210 0 0112356678899995 3444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|+..++.++||+|+
T Consensus 140 --~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~v-tHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 --KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLV-THLMDDVADYADYVY 215 (288)
T ss_pred --CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEE
Confidence 44578999999999999999999999999999999999999999999999865 45565555 566778999999999
Q ss_pred EecCCeEEEecCHHHHH---HHHHhcCCCCCCCCCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 433 (991)
+|++|+++++|+++++. +++...|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 34556788777655554444
No 77
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-38 Score=336.27 Aligned_cols=205 Identities=30% Similarity=0.384 Sum_probs=171.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 999999999876432 1357899999998889
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+.....+... . .....++++++.+||++..+..
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 137 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------A------------------------EIEERVLELLELVGLEDKADAY---- 137 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhhcC----
Confidence 9999999998754322100 0 0011345678999998776654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|+
T Consensus 138 -~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~-sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 -PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI-THEMEVVKRICDRVAVME 215 (233)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999866435566665 455678889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
No 78
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=9e-38 Score=336.77 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2458999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... ..+. . ...+ ..+....++++++.+||++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~-~-----~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~----- 140 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA-R-----ARRE-----------EREARERAEELLERVGLADLADRP----- 140 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc-c-----cccc-----------HHHHHHHHHHHHHHcCccchhhCC-----
Confidence 999999998764321100 0000 0 0000 000112356788999998766644
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|++ +|+.+++.++||++++|++
T Consensus 141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLV-EHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999865 45665555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
No 79
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-38 Score=318.56 Aligned_cols=207 Identities=30% Similarity=0.439 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (991)
+++|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||++++...+. +..+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45999999999999999999999999999999999999998 99999999999877653 5678999999888899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|-+.+++.-++.+...+ +...+++..|...++.+.+. +..
T Consensus 91 tv~eVV~mGr~p~~~g~~~~--------------------------------e~~~i~~~ala~~d~~~la~-----R~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPE--------------------------------EDERIAAQALAATDLSGLAG-----RDY 133 (259)
T ss_pred EHHHHHHhcccccccCCCch--------------------------------hhHHHHHHHHHHcChhhhhc-----cch
Confidence 99999999986553332100 11224566777888877664 445
Q ss_pred CCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+.|||||||||.+||.|+. ++++||||||||.||......+++..|++++. + ..|+.+.|+.+.+..+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 7899999999999999974 45699999999999999999999999999974 4 55666778999999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
No 80
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-37 Score=330.94 Aligned_cols=199 Identities=30% Similarity=0.416 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 35799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+..+..+... . +....++++++.+||.+..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------D------------------------EIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99998754332100 0 01123466788999987766544 589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++ |...++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~s-H~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT-HDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764456666654 5667889999999999999999
Q ss_pred Eec
Q 001957 405 YQG 407 (991)
Q Consensus 405 ~~G 407 (991)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
No 81
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.3e-38 Score=380.00 Aligned_cols=206 Identities=27% Similarity=0.423 Sum_probs=168.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.+||+||||||||||+++|+|++ |+ +|+|++||+++++... ++.++||+|++. +++.|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-LF~~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQ-LPHGT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCc-CCCcC
Confidence 4999999999999999999999999999999999999 87 9999999999987654 478999999765 55679
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|||.++.. ....+... ++....+ .+.. +-.|++..||.||+. ..
T Consensus 439 I~eNI~~g~~----~~~~eei~---------------------~al~~a~------l~~~--i~~lp~G~dT~vge~-G~ 484 (588)
T PRK11174 439 LRDNVLLGNP----DASDEQLQ---------------------QALENAW------VSEF--LPLLPQGLDTPIGDQ-AA 484 (588)
T ss_pred HHHHhhcCCC----CCCHHHHH---------------------HHHHHhC------HHHH--HHhcccccccccccC-CC
Confidence 9999999631 11111111 1111100 1111 335778899999975 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.||+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999874 467877777665 6678899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++++
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999999864
No 82
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.3e-37 Score=334.66 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 35999999999999999999999999999999999999998 9999999998754332 2468999999989999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... . .....++++++.+||++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~----- 130 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------K------------------------EREEKLEELLEEFHITHLRKSK----- 130 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC-----
Confidence 999999998653321100 0 0112346688899998766654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|+.+++.+++|+|++|++
T Consensus 131 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLIT-DHNVRETLSITDRAYIIYE 208 (232)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 45565555 5566789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987763
No 83
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=331.86 Aligned_cols=201 Identities=29% Similarity=0.393 Sum_probs=168.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|+..+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999998 9999999998764 246799999998888889999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.++....+... . .....++.+++.+||.+..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998764332110 0 00123456888999987666544 589
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~ 402 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV-THDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999999865445566655 556668889999999999 799
Q ss_pred EEEecCHH
Q 001957 403 IVYQGPRE 410 (991)
Q Consensus 403 iv~~G~~~ 410 (991)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.2e-38 Score=335.59 Aligned_cols=203 Identities=26% Similarity=0.370 Sum_probs=167.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~-----~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.... .++.++|++|+.
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5999999999999999999999999999999999999 787 999999999875432 235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++ .+||+||+.++....+.... . .....++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------E------------------------ELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987643321000 0 0012345678899998766543
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . .|+|+ ++|..+++.++||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~-~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVI-VTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEE-EeccHHHHHHhCCEE
Confidence 20 468999999999999999999999999999999999999999999999865 3 45555 556677889999999
Q ss_pred EEecCCeEEEecCHHH
Q 001957 396 ILLSDGQIVYQGPREL 411 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (991)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998765
No 85
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-37 Score=346.67 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875422 2367999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+.|.+++.+.... +....++++++.+||.+..|+.+ +
T Consensus 92 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~ 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQ----------------------------------LLKQRVEEMIELVGLRPEQHKKI-----G 132 (301)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHCCCchHhcCch-----h
Confidence 99999988765432100 01113466899999998877655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+++|++|||||||+|||+.++..+.+.|+++. .+.|+|+ ++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii-~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTIIL-STHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CCCEEEE-EcCCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999974 3555555 5667789999999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998764
No 86
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8e-38 Score=332.69 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=162.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 5999999999999999999999999999999999999998 999999999875432 2357999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+..+..+... . .....++++++.+||++..+..
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 135 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------R------------------------DANERVSAALEKVGLEGKAHAL---- 135 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC----
Confidence 9999999998765432110 0 0112345678999998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+.+++.++||++++|+
T Consensus 136 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 136 -PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLV-ATHDINLVETYRHRTLTLS 212 (216)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEe
Confidence 458999999999999999999999999999999999999999999999864 4556555 5566778889999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
No 87
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.4e-37 Score=331.74 Aligned_cols=203 Identities=31% Similarity=0.446 Sum_probs=169.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++|+|||+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999998 99999999987542 12356999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..+..+.... +....++++++.+||.+..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 99999987654321100 00112456788999987776554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|..+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~-~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIIL-TTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEE-EcCCHHHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999753 455555 4566678889999999999999
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
No 88
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-39 Score=351.28 Aligned_cols=250 Identities=21% Similarity=0.352 Sum_probs=202.5
Q ss_pred HHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCcccc
Q 001957 85 IDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRH 164 (991)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (991)
+|+.+.+.++++| +.+......+..++..|.|+|+++.++. .
T Consensus 509 mEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p---------------------------------~ 550 (790)
T KOG0056|consen 509 MENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP---------------------------------G 550 (790)
T ss_pred HHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------------C
Confidence 6777777777776 5554444555667899999999999752 2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+||||++.||+.+||+||||+||||++++|-++++.+ +|.|++||++++.. ..++.+|.||||. .+++-
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt-vLFNd 626 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDT-VLFND 626 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcc-eeecc
Confidence 45999999999999999999999999999999999999988 99999999998653 3457899999954 55677
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+..|++|+. +....|+..+. .+++ +-.-+++++++.++|+||++..
T Consensus 627 TI~yNIryak----~~AsneevyaA---AkAA--------------------------~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 627 TILYNIRYAK----PSASNEEVYAA---AKAA--------------------------QIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeeeheeecC----CCCChHHHHHH---HHHh--------------------------hHHHHHhcCchhhhhhhhhccc
Confidence 9999999874 22222221111 1111 1123588999999999998877
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+ |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|+|+.. |+-++.-.+|.|+++++|
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADLILVISNG 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccEEEEEeCC
Confidence 6 999999999999999999999999999999999999999999999985 34544443 345677789999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+|++.|.+++++.
T Consensus 749 ~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 749 RIVERGRHEELLK 761 (790)
T ss_pred eEeecCcHHHHHh
Confidence 9999999999974
No 89
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=335.01 Aligned_cols=214 Identities=30% Similarity=0.416 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 35999999999999999999999999999999999999988 999999999876542 135789999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++...... ....+. +.. . ......++.+++.+||.+..++
T Consensus 91 ~~~tv~~~l~~~~~~~~~-----~~~~~~------~~~--~-------------~~~~~~~~~~l~~~~l~~~~~~---- 140 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS-----TWRSLF------GLF--P-------------KEEKQRALAALERVGLLDKAYQ---- 140 (241)
T ss_pred ccCcHHHHHHhhhcccch-----hhhhhc------ccC--c-------------HHHHHHHHHHHHHcCChhhhCC----
Confidence 999999999886431100 000000 000 0 0011234567889999766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+.+++.+++|++++|
T Consensus 141 -~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 141 -RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS-LHQVDLAREYADRIVGL 218 (241)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 4468999999999999999999999999999999999999999999999875445565555 56677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
No 90
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=341.02 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=175.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999999864322 35789999986 467889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+.+..+... .+....++++++.+||++..|.. +
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKERE-----P 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCC-----c
Confidence 99999998754332110 00112356789999998766644 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+++| ..+++ ..||+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH-~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH-DLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHH-HhCCEEEEEECC
Confidence 6899999999999999999999999999999999999999999999987644666666655 45566 589999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCPK 425 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (991)
+++..|+++++.. .++..|+.+|.
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 9999999987752 24444555443
No 91
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2e-37 Score=330.84 Aligned_cols=202 Identities=25% Similarity=0.395 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998765432 35699999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (991)
||+||+.+.....+. . + ....++.+++.+ ++++..++.
T Consensus 91 t~~~~l~~~~~~~~~--~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~----- 129 (222)
T cd03224 91 TVEENLLLGAYARRR--A-----K-----------------------------RKARLERVYELFPRLKERRKQL----- 129 (222)
T ss_pred cHHHHHHHHhhhcCc--h-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCc-----
Confidence 999999987543210 0 0 001123455666 466555543
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++ +|+..++.+++|+|++|++
T Consensus 130 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLV-EQNARFALEIADRAYVLER 207 (222)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhccEEEEeeC
Confidence 468999999999999999999999999999999999999999999999865 45565555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987753
No 92
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=333.64 Aligned_cols=232 Identities=25% Similarity=0.344 Sum_probs=189.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-C-CCCeeeEEEECCeeCCCccc-------cceEEEEecC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~-~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (991)
...+++||||++++||+++|+|.|||||||+.++|.|+++ + ...++|+|.|+|.++-.+.. -+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33467999999998755432 2579999998
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+ .+.|.+||.+.+.-..+.+.... .+ ++....+.++|+.+||++..
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHHHHHHHHHHHHcCCCCHH
Confidence 4 67899999999987776432110 00 01123455689999998643
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
. +.+.++.+|||||||||.||.||+.+|++||.|||||+||...+.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33578999999999999999999999999999999999999999999999999987 45677777889999999999
Q ss_pred CeEEEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 001957 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 438 (991)
|+|+||+.|+||+.|+.+++. ..|.+..+...+..+-+
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCcc
Confidence 999999999999999999873 45766666555555433
No 93
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=340.29 Aligned_cols=208 Identities=26% Similarity=0.337 Sum_probs=174.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999998 9999999998764321 24699999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++.+||+||+.+.....+... . .....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 88889999999998764332100 0 0011345678999998777655
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ +.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|++
T Consensus 158 ~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~-tH~~~~~~~~~d~v 231 (269)
T cd03294 158 P-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI-THDLDEALRLGDRI 231 (269)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEE
Confidence 4 57999999999999999999999999999999999999999999999875445666655 55667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 94
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-38 Score=383.68 Aligned_cols=256 Identities=24% Similarity=0.373 Sum_probs=201.0
Q ss_pred hHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCC--ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.++..+.+++++++..+. +.. -+..+...| +.+|.|+|+++.|.
T Consensus 953 ka~~Aa~~iF~i~dr~~~-----i~~-~~~~~~~~~~~~G~I~~~~V~F~YP---------------------------- 998 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPT-----IDP-DSTSGGKLPNVKGDIEFRNVSFAYP---------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHhcCCCC-----CCC-CCCCCCccccceeEEEEeeeEeeCC----------------------------
Confidence 345556666666665542 111 012332233 56799999999873
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
++ +...||+|+|+.|++|+.+||+|||||||||.+.+|-++|+|. +|.|.+||+++++++. ++.+|.|.|+
T Consensus 999 --sR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 999 --TR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred --CC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccC
Confidence 22 3467999999999999999999999999999999999999998 9999999999998775 4789999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++-|+||||.|+.. .. ..+ |+.+..+. ++..--+.+|++.+||
T Consensus 1073 P~L-F~~TIrENI~YG~~--~v--s~~---eIi~Aak~--------------------------ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1073 PVL-FNGTIRENIAYGSE--EV--SEE---EIIEAAKL--------------------------ANAHNFISSLPQGYDT 1118 (1228)
T ss_pred chh-hcccHHHHHhccCC--CC--CHH---HHHHHHHH--------------------------hhhHHHHhcCcCcccC
Confidence 765 56799999999821 11 111 11111111 1222346789999999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.||++. .+||||||||++|||||++||+||+|||.||+||+++...+.+.|.+.. .++|+|+.. |+..+.+.+|.
T Consensus 1119 ~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1119 RVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNADV 1193 (1228)
T ss_pred ccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcCCE
Confidence 999655 5799999999999999999999999999999999999999999999964 356666554 45689999999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|+++|+|+++|+|+++++
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999999985
No 95
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=338.88 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=173.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998865322 356999999853 56678
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+....+... ......++++++.+||.+..+.. +
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-----~ 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKP-----P 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCC-----h
Confidence 99999998754322110 00112346688999998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++ +|..+++.++||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~-tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVA-THDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865 45565554 56677888999999999999
Q ss_pred eEEEecCHHHHH--HHHHhcCCCCC
Q 001957 402 QIVYQGPRELVL--EFFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~--~~f~~~G~~~p 424 (991)
++++.|+++++. +.+...|+.+|
T Consensus 215 ~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 215 RVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred EEEEECCHHHhcCHHHHHHcCCCCC
Confidence 999999986542 22333444443
No 96
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.6e-38 Score=378.94 Aligned_cols=254 Identities=28% Similarity=0.395 Sum_probs=196.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+.....++|+.++.++.++ +.+.... ...+..+++|+|+++.++.
T Consensus 296 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~---------------------------- 340 (567)
T COG1132 296 QRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG---------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC----------------------------
Confidence 4556667777777776443 2221111 3345567999999998741
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
++.+|+|+|+.++|||.+||+||||||||||+++|.|+++|+ +|+|.+||+++++... ++.++||+|+.
T Consensus 341 -----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 341 -----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred -----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 245999999999999999999999999999999999999998 9999999999987654 57899999965
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+| +.||+|||.++..- ...+...+ ..+.++ .+. .+..|++.+||.
T Consensus 413 ~LF-~~TI~~NI~~g~~~----at~eei~~---a~k~a~------------------------~~d--~I~~lp~g~dt~ 458 (567)
T COG1132 413 LLF-SGTIRENIALGRPD----ATDEEIEE---ALKLAN------------------------AHE--FIANLPDGYDTI 458 (567)
T ss_pred eee-cccHHHHHhcCCCC----CCHHHHHH---HHHHhC------------------------hHH--HHHhCcccccce
Confidence 555 59999999997421 11111111 111110 111 234568899999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|| +....||||||||++||||++++|++|+||||||+||+.+...|.+.++++. +++|+++..|+ . .+...+|+|
T Consensus 459 vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHR-l-sti~~aD~I 533 (567)
T COG1132 459 VG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHR-L-STIKNADRI 533 (567)
T ss_pred ec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEecc-H-hHHHhCCEE
Confidence 99 4556799999999999999999999999999999999999999999999775 34677775444 3 455559999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|++++++.
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999975
No 97
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=344.75 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC-----------------------
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------------------- 221 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------------------- 221 (991)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 9999999876521
Q ss_pred ----ccccceEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhh
Q 001957 222 ----FVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (991)
Q Consensus 222 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (991)
...++.++||+|++ ..++..||+||+.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01235789999984 45667899999999765432210 0011
Q ss_pred HHHHHHHHHcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 297 VITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..++++++.+||+ +..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 4555 44578999999999999999999999999999999999999999999999864 455
Q ss_pred eEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
|+|+ ++|..+++.++||+|++|++|++++.|+++++.
T Consensus 217 tiii-vtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIIL-VTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEE-EeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5554 566778899999999999999999999998875
No 98
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=345.42 Aligned_cols=221 Identities=22% Similarity=0.397 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------------------ccc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQ 225 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------------------~~~ 225 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999998 99999999887532 123
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 226 RTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 226 ~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
+.++||+|++ ..++..||+||+.|+....+.. . .+....++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 6799999985 2344569999999875432110 0 001123456788
Q ss_pred HcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 305 VLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
.+||+ ...+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|
T Consensus 162 ~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiiv-tH 234 (320)
T PRK13631 162 KMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVI-TH 234 (320)
T ss_pred HcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ec
Confidence 99996 3444 44568999999999999999999999999999999999999999999999864 45565554 56
Q ss_pred CCchhHhhcCeEEEecCCeEEEecCHHHHH---HHHHhcCCCCCCCCCH
Q 001957 384 PAPETYDLFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGV 429 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ 429 (991)
..+++.++||+|++|++|++++.|+++++. ..+...|+.+|.....
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 283 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQV 283 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHHH
Confidence 677888999999999999999999998774 3344556665554333
No 99
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=327.95 Aligned_cols=198 Identities=26% Similarity=0.405 Sum_probs=166.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999998 9999999998754 2356799999999888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+....++.... +....++++++.+||++..++. ++.|
T Consensus 89 e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKKE----------------------------------EARRRIDEWLERLELSEYANKR-----VEEL 129 (210)
T ss_pred HHHHHHHHHcCCChH----------------------------------HHHHHHHHHHHHcCChHHHhCc-----HhhC
Confidence 999987544321100 0112346678899998776654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|...++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVIL-STHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-ECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 4555555 456677888999999999999998
Q ss_pred Eec
Q 001957 405 YQG 407 (991)
Q Consensus 405 ~~G 407 (991)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
No 100
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-38 Score=333.45 Aligned_cols=223 Identities=26% Similarity=0.351 Sum_probs=194.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (991)
+...-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++...+. ++.+++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3345789999999999999999999999999999999999999 9999999999876543 36799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++|+.||.||..|+...+|.... . .+....+.|+..||+...+
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~-------e---------------------------r~~~a~~~l~~VgL~~~~~-- 159 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA-------E---------------------------REERALEALELVGLEGYAD-- 159 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH-------H---------------------------HHHHHHHHHHHcCchhhhh--
Confidence 999999999999999999887531 1 1223466899999998887
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++-+..++| |+.++|+.+|++++.|||
T Consensus 160 ---~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rI 235 (386)
T COG4175 160 ---KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRI 235 (386)
T ss_pred ---cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceE
Confidence 5668999999999999999999999999999999999999999999999987755555 555678999999999999
Q ss_pred EEecCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 001957 396 ILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 436 (991)
.+|.+|+||..|++++++. .|....+++|..++
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999973 57777777777665
No 101
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-37 Score=330.29 Aligned_cols=195 Identities=29% Similarity=0.392 Sum_probs=161.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 45999999999999999999999999999999999999998 999999999876533 13579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.++....+... . .....++++++.+||++..++.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 137 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHY-- 137 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcC--
Confidence 999999999999765432110 0 0012346688999998766654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.| ...++. +||++++
T Consensus 138 ---~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~-~~d~v~~ 212 (218)
T cd03255 138 ---PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH-DPELAE-YADRIIE 212 (218)
T ss_pred ---hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHh-hhcEEEE
Confidence 46899999999999999999999999999999999999999999999987534566666655 455665 9999999
Q ss_pred ecCCeE
Q 001957 398 LSDGQI 403 (991)
Q Consensus 398 L~~G~i 403 (991)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 102
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.2e-37 Score=337.29 Aligned_cols=206 Identities=22% Similarity=0.338 Sum_probs=171.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4999999999999999999999999999999999999998 999999999876432 1356899999988889
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||.||+.+......... +. .....+..+++.+||.+..+..
T Consensus 98 ~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~gl~~~~~~~---- 140 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQLP---------AP------------------------LLHSTVMMKLEAVGLRGAAKLM---- 140 (269)
T ss_pred CCCHHHHHHHHHHHccCCC---------HH------------------------HHHHHHHHHHHHcCChhhhhCC----
Confidence 9999999998643210000 00 0011245678899998777654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++++|+
T Consensus 141 -~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 141 -PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV-SHDVPEVLSIADHAYIVA 218 (269)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhhCEEEEEE
Confidence 458999999999999999999999999999999999999999999999875435565555 566778999999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
No 103
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.2e-37 Score=330.36 Aligned_cols=203 Identities=34% Similarity=0.544 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 77 999999999876433457799999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHH-HHHHcCCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (991)
||+||+.|+....+..... ... .....+. .++.+++.+..++ .
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGN-----L 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhcc-----c
Confidence 9999999876543211000 000 0011233 6788888766554 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++|++..++.++||++++|++
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 568999999999999999999999999999999999999999999999865 4677777777665789999999999999
Q ss_pred CeEEEec
Q 001957 401 GQIVYQG 407 (991)
Q Consensus 401 G~iv~~G 407 (991)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
No 104
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-37 Score=333.23 Aligned_cols=206 Identities=28% Similarity=0.402 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 35999999999999999999999999999999999999998 9999999998764322 35789999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc--cccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (991)
||+||+.+..+..+... . .....+.++++.+||.+ ..+ +
T Consensus 91 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~l~l~~~~~~~-----~ 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------E------------------------KIRERADELLALVGLDPAEFAD-----R 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcHHHHh-----c
Confidence 99999998754332100 0 00113456788999975 444 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++ |+..++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s-H~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT-HDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhCCEEEEEE
Confidence 45689999999999999999999999999999999999999999999998764355655554 55668899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
No 105
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-37 Score=325.20 Aligned_cols=179 Identities=45% Similarity=0.784 Sum_probs=157.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHI 238 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~ 238 (991)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|+++ |+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccC
Confidence 3569999999999999999999999999999999999998 66 999999999876532 246799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++.+.. .+
T Consensus 96 ~~~tv~~~l~~~~~~~--------------------------------------------------------------~~ 113 (202)
T cd03233 96 PTLTVRETLDFALRCK--------------------------------------------------------------GN 113 (202)
T ss_pred CCCcHHHHHhhhhhhc--------------------------------------------------------------cc
Confidence 9999999998764210 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++||+.+++.+++|++++|
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 34467999999999999999999999999999999999999999999999876446678888888888999999999999
Q ss_pred cCCeEEEec
Q 001957 399 SDGQIVYQG 407 (991)
Q Consensus 399 ~~G~iv~~G 407 (991)
++|++++.|
T Consensus 194 ~~G~i~~~g 202 (202)
T cd03233 194 YEGRQIYYG 202 (202)
T ss_pred ECCEEEecC
Confidence 999999865
No 106
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.9e-37 Score=345.64 Aligned_cols=208 Identities=22% Similarity=0.235 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
..+|+|||++|++||+++|+|+||||||||+++|+|+++++ +|+|.++|.++.... .++.++||+|+. .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999998 999999999986543 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
++|.+||.|++.+..+....+.. +. +....++++++.+||. ...+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------~~------------------------~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------RQ------------------------EVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------HH------------------------HHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999987653311000 00 0112345678999994 3333
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+. +|+.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~-til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL-SLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEE
Confidence 566799999999999999999999999999999999999999999999998664344 4555677888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
No 107
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=352.17 Aligned_cols=207 Identities=25% Similarity=0.324 Sum_probs=175.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+||.++..... ++.++||+|+..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345899999999999999999999999999999999999998 9999999999865432 247999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.|.....+.... +....++++++.+||.+..+.
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~----------------------------------~~~~~~~e~L~~~gL~~~~~~-- 160 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAE----------------------------------ERREKALDALRQVGLENYAHS-- 160 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCChhhhc--
Confidence 99999999999998654332100 001234668999999876664
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|++ +|..+++.+++|+|+
T Consensus 161 ---~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIiv-THd~~~~~~~~Dri~ 236 (400)
T PRK10070 161 ---YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI-SHDLDEAMRIGDRIA 236 (400)
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEE-ECCHHHHHHhCCEEE
Confidence 4568999999999999999999999999999999999999999999999865445565554 567788999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999998774
No 108
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-37 Score=329.42 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++..... ++.++|++|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 2469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~-- 142 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------A------------------------EINSRALEMLAAVGLEHRANHR-- 142 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 899999999998754321100 0 0112345688999998766654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++. |+.+++.. +|++++
T Consensus 143 ---~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s-H~~~~~~~-~~~~~~ 217 (233)
T PRK11629 143 ---PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT-HDLQLAKR-MSRQLE 217 (233)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHh-hCEEEE
Confidence 4689999999999999999999999999999999999999999999998653456666655 45556655 589999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
No 109
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.4e-37 Score=329.73 Aligned_cols=206 Identities=26% Similarity=0.370 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc--cceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .+.++|++|+..+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35999999999999999999999999999999999999998 9999999998754322 257899999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... . +....++++++.+||++..++.+ .
T Consensus 91 ~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~ 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------A------------------------EARERIAALLARLGLAERADDKV-----R 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 9999988654322100 0 00113456788999987766544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWAT-HLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cChhhHh-hCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999998754466666655 4555665 499999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++..
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
No 110
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-37 Score=352.85 Aligned_cols=209 Identities=27% Similarity=0.420 Sum_probs=174.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+||.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45999999999999999999999999999999999999998 9999999998865432 46799999999888999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|++.++...+.... ..+ .......++++++.+||.+..|+. +
T Consensus 93 tv~e~v~~~~~~~~~~~--~~~----------------------------~~~~~~~v~~~le~vgl~~~~~~~-----~ 137 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRF--DTW----------------------------TETDRAAVERAMERTGVAQFADRP-----V 137 (402)
T ss_pred CHHHHHHhccchhcccc--cCC----------------------------CHHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 99999998643210000 000 000122467789999998777654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||.||++|+++|++|||||||+|||+.++.++++.|+++++ .+.|+|+ ++|..+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIi-vsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVA-AIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999875 4556555 567788999999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
No 111
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=341.36 Aligned_cols=206 Identities=21% Similarity=0.315 Sum_probs=168.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCC-C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (991)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 99999999988542 1245799999985 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++..||.||+.|+....+... .+....++++++.+||. +..++
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQ- 141 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhC-
Confidence 3444699999998754322110 00112356688999996 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|..+++.+++|+|
T Consensus 142 ----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~-vtH~~~~~~~~~dri 216 (286)
T PRK13646 142 ----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL-VSHDMNEVARYADEV 216 (286)
T ss_pred ----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEE
Confidence 456899999999999999999999999999999999999999999999986544555555 456677889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998765
No 112
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.6e-37 Score=344.72 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=174.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCC--
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d-- 235 (991)
..+|+||||+|++||+++|+|+||||||||+++|+|++++....+|+|.|+|.++..... .+.++||+|+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742238999999999865432 14799999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+.+.+||.+++.+.....+.... . +....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~---------~------------------------~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSK---------A------------------------EAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCH---------H------------------------HHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999876543211000 0 011234567889999764332
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ +.++++|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.++.+ ++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN-TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhCCEE
Confidence 2 367889999999999999999999999999999999999999999999999876434 45555667788889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998885
No 113
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.8e-37 Score=325.56 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=165.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-cccceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35999999999999999999999999999999999999998 99999999987542 123578999999888999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. ....++++++.++|.+..++. +..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKK-----VKG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhh-----Hhh
Confidence 9999987542210 001245678889998776654 457
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLIS-SHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 45665555 5667788899999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8865
No 114
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=315.89 Aligned_cols=210 Identities=21% Similarity=0.365 Sum_probs=181.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+++++++|||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++.++.. .-+||.+|+...|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999999 99999999999887653 3579999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
-.|||+|||......+.... .+ .+.+...+.+|+.|+|.|++|..
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------~~------------------------~~~~~~l~~LL~ef~i~hlr~~~--- 136 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------KK------------------------AERKEELDALLEEFHITHLRDSK--- 136 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------hH------------------------HHHHHHHHHHHHHhchHHHhcCc---
Confidence 99999999998876542110 00 11223467899999999999865
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
...||||||+|+.|||||+.+|+.++||||++|.||-+-.+|.+.++.+.. .|.-++| +-|...|+..+|||.+++
T Consensus 137 --a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi 212 (243)
T COG1137 137 --AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYII 212 (243)
T ss_pred --ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEE
Confidence 357999999999999999999999999999999999999999999999865 4555555 466778999999999999
Q ss_pred cCCeEEEecCHHHHHH
Q 001957 399 SDGQIVYQGPRELVLE 414 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (991)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998863
No 115
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.5e-37 Score=333.65 Aligned_cols=213 Identities=26% Similarity=0.347 Sum_probs=170.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|+..++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35999999999999999999999999999999999999998 999999999875432 245699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....... ...+.. .. .......++++++.+||.+..+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~-----~~~~~~------~~---------------~~~~~~~~~~~l~~~~l~~~~~~---- 141 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPT-----WRSLLG------RF---------------SEEDKERALSALERVGLADKAYQ---- 141 (243)
T ss_pred ccccHHHHHhhcccccccc-----hhhhhc------cc---------------cHHHHHHHHHHHHHcCcHhhhcC----
Confidence 9999999998753211000 000000 00 00011234567889999876654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++++|
T Consensus 142 -~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 142 -RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN-LHQVDLAKKYADRIVGL 219 (243)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEEEE
Confidence 4468999999999999999999999999999999999999999999999865445555554 56677888999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
No 116
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.3e-37 Score=326.80 Aligned_cols=198 Identities=30% Similarity=0.443 Sum_probs=165.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 99999999987642 123679999999988888999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+... . +....++++++.+||++..+.. ++.
T Consensus 96 ~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------D------------------------ELTARLEELADRLGMEELLDRR-----VGG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhhh-----hhh
Confidence 999998654332110 0 0112346688999998776654 458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|...++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFS-THIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 45565555 5566788999999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
No 117
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-37 Score=336.93 Aligned_cols=215 Identities=27% Similarity=0.361 Sum_probs=174.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+. ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999999865332 35799999986 367789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++....+... .+....++++++.+||.+..++. +
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 138 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNRE-----P 138 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC-----c
Confidence 99999998754322100 00112356788999998776654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+++| ..+++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH-~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH-DLDEAA-QADRVIVMNKG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEec-CHHHHH-cCCEEEEEECC
Confidence 5899999999999999999999999999999999999999999999987644566666655 455665 59999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (991)
++++.|+.+++.. .+...|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 217 EILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred EEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 9999999987753 3444455444
No 118
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-36 Score=329.26 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999999998 99999999987642 12357899999988888
Q ss_pred CCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.++.. ..+... . +....++++++.+||++..|..
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~--- 133 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASK----------E------------------------EAEKQARELLAKVGLAERAHHY--- 133 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChHHHhcC---
Confidence 9999999988642 111100 0 0112345688899998766644
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .++|+|++ +|+.+++.++||++++|
T Consensus 134 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 134 --PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIV-THEIGFAEKVASRLIFI 209 (240)
T ss_pred --hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999864 45665555 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.7e-37 Score=332.01 Aligned_cols=204 Identities=27% Similarity=0.387 Sum_probs=169.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----------cccceEEEEecC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----------~~~~~~~yv~Q~ 234 (991)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999999998 99999999987532 123578999999
Q ss_pred CCCCCCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
..+++.+||+||+.++... ++.. . ......++++++.+||.+..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEP-K---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 8888899999999886431 1100 0 001123456788999987665
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
+ .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|
T Consensus 140 ~-----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-tH~~~~~~~~~d 212 (250)
T PRK11264 140 S-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIV-THEMSFARDVAD 212 (250)
T ss_pred C-----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcC
Confidence 4 4468999999999999999999999999999999999999999999999865 45565554 566778889999
Q ss_pred eEEEecCCeEEEecCHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (991)
++++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 120
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=342.91 Aligned_cols=213 Identities=21% Similarity=0.244 Sum_probs=172.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCeeCCCccc-------cceEEEEecCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~-~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (991)
..+|+||||+|++||+++|+|+||||||||+++|+|++++... .+|+|.++|+++..... .+.++||+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4699999999999999999999999999999999999874221 28999999999865432 13699999986
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+.|.+||.+++....+...... + .+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------~------------------------~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------K------------------------KTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 47889999999877654321000 0 001123567899999975321
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+-+.++++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++.+.| ++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~t-il~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMA-LVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCE
Confidence 1235678999999999999999999999999999999999999999999999987644554 55556778889999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
No 121
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-37 Score=325.16 Aligned_cols=192 Identities=26% Similarity=0.350 Sum_probs=160.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC-CCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 45999999999999999999999999999999999999998 9999999998754333467999999864 3567899
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. ....++++++.+||.+..++. +..
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERH-----PLS 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCC-----chh
Confidence 9999886432100 001245678999998776654 458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVI-THDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 45666665 4566688899999999999997
Q ss_pred E
Q 001957 404 V 404 (991)
Q Consensus 404 v 404 (991)
|
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
No 122
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.6e-37 Score=378.53 Aligned_cols=252 Identities=23% Similarity=0.295 Sum_probs=190.9
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++.+.+.+.- + +....+.....++|+|+++.+..
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~-----~--~~~~~~~~~~~I~~~nvsf~Y~~---------------------------- 463 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVD-----E--AKTDPGKLSGAIEVDRVTFRYRP---------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHhcCCcccc-----c--CcCCCCCCCceEEEEEEEEEcCC----------------------------
Confidence 445556677776665544310 0 00000111346999999998731
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|++|+|||.+||+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++
T Consensus 464 ----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 464 ----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred ----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 1134999999999999999999999999999999999999998 9999999999987654 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+ ++.|++|||.++.. ...+... +..+.+++ ++. +..|++..||.
T Consensus 537 ~l-f~gTI~eNi~~~~~-----~~~e~i~---~al~~a~l------------------------~~~--i~~lp~G~dt~ 581 (686)
T TIGR03797 537 RL-MSGSIFENIAGGAP-----LTLDEAW---EAARMAGL------------------------AED--IRAMPMGMHTV 581 (686)
T ss_pred cc-CcccHHHHHhcCCC-----CCHHHHH---HHHHHcCc------------------------HHH--HHhcccccccc
Confidence 55 56799999998632 1111111 11111110 111 23467789999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+. ...||||||||++|||||+++|++|+||||||+||+.++.++.+.|+++ ++|+|+..|++ ++.+.+|+|
T Consensus 582 ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~I 654 (686)
T TIGR03797 582 ISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRI 654 (686)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEE
Confidence 9965 4679999999999999999999999999999999999999999999874 35777766554 667889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++++
T Consensus 655 ivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 655 YVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999863
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=337.03 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=170.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC--c---cccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|+.. .++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12357999999863 356
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||+||+.+.....+... . .....++++++.+||.+..|+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~----- 137 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------D------------------------EVRKRVDNALKRTGIEHLKDK----- 137 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhhC-----
Confidence 7899999998754322110 0 011235678899999876664
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.++||++++|+
T Consensus 138 ~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv-sH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-THDIDIVPLYCDNVFVMK 216 (283)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999876445665555 566778889999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1e-36 Score=325.32 Aligned_cols=196 Identities=24% Similarity=0.348 Sum_probs=160.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998765332 1469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+......... . +....+.++++.+||++..+..
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 138 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------K------------------------EAKERAYEMLEKVGLEHRINHR-- 138 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC--
Confidence 889999999998654321100 0 0011245678899998766644
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++| ...++. .+|++++
T Consensus 139 ---~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH-~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 139 ---PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH-DLELAK-KLDRVLE 213 (221)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHh-hcCEEEE
Confidence 46899999999999999999999999999999999999999999999987544666666655 455664 5799999
Q ss_pred ecCCeEE
Q 001957 398 LSDGQIV 404 (991)
Q Consensus 398 L~~G~iv 404 (991)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
No 125
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-37 Score=324.42 Aligned_cols=196 Identities=30% Similarity=0.453 Sum_probs=164.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++| +++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 5999999999999 99999999999999999999999998 999999998875432 24678999999988999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+... . +....++++++.+||++..|+.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------K------------------------EVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 999998754332100 0 00123456788999987766544 57
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.| |+.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~t-ii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRI-VILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCE-EEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 445 44456677788899999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
No 126
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.3e-36 Score=327.82 Aligned_cols=233 Identities=24% Similarity=0.321 Sum_probs=180.8
Q ss_pred EEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 001957 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (991)
Q Consensus 119 v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~L 198 (991)
|+.+|++.++.... ..+++.+.+.+.+ ..+...+.+|+|+|+.|++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35678888876532 2334444333322 1223446799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEe-cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCC
Q 001957 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (991)
Q Consensus 199 aG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (991)
+|+++|+ +|+|.++|+++... ..++.++|++ |++.+++.+||+|++.+.....+....
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------- 128 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA---------------- 128 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHH----------------
Confidence 9999998 99999999876432 1245789998 445677899999999987644321100
Q ss_pred CCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCC
Q 001957 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (991)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD 355 (991)
+....++.+++.+||++..|+.+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 129 ------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 129 ------------------RFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred ------------------HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 00112456788899988887665 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 356 ~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|.+|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE-ecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999876445566655 55667889999999999999998765
No 127
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=330.41 Aligned_cols=200 Identities=26% Similarity=0.362 Sum_probs=166.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... .+.++|++|+..+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 5999999999999999999999999999999999999998 99999999987642 345899999988888999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.....+... . .....++++++.+||.+..++. +..||
T Consensus 90 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------M------------------------QRLEIAHQMLKKVGLEGAEKRY-----IWQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhhCC-----hhhCC
Confidence 9988654322100 0 0011346688999998766644 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCeE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~i 403 (991)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++ +|+..++.++||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI-THDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCCcEE
Confidence 9999999999999999999999999999999999999999999865445565554 567778999999999998 5999
Q ss_pred EEecCHH
Q 001957 404 VYQGPRE 410 (991)
Q Consensus 404 v~~G~~~ 410 (991)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988754
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=333.08 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999998 999999999886432 2457899999863 6778
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... .+....++++++.+||.+..|+.
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 139 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKE----- 139 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCC-----
Confidence 999999998654221100 00112356688999998777654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|++.|++ +++. .+|++++|++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEAI-LADKVIVFSE 217 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHHh-hCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999998753346666666554 4554 7999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.7e-37 Score=346.95 Aligned_cols=208 Identities=25% Similarity=0.293 Sum_probs=175.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe----eCCCccc-------cceEEEE
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~----~~~~~~~-------~~~~~yv 231 (991)
+...+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3332211 2469999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
+|+..+++.+||+||+.|+...++.... +....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~----------------------------------~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEA----------------------------------ERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchh
Confidence 9999999999999999998654432110 011234668999999877
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.|.. +..|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+.+++.++
T Consensus 158 ~~~~-----~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~-iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKK-----PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF-VSHDLDEALKI 231 (382)
T ss_pred hcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHh
Confidence 7654 45799999999999999999999999999999999999999999999987644555555 45677899999
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
No 130
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-36 Score=326.33 Aligned_cols=202 Identities=25% Similarity=0.325 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 35999999999999999999999999999999999999998 9999999998764332 3568999999988999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC-CcccccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (991)
+||+||+.++....+.. . ....+.+++.++ +.+..| .
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~-----~ 127 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLG-----R 127 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhh-----C
Confidence 99999999875432110 0 001234555565 444444 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|+
T Consensus 128 ~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVME 206 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865335565555 556678889999999999
Q ss_pred CCeEEEecCHHHH
Q 001957 400 DGQIVYQGPRELV 412 (991)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (991)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
No 131
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=339.56 Aligned_cols=207 Identities=19% Similarity=0.217 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+|||++|++||+++|+|+||||||||+++|+|+++++ +|+|.++|+++.... .++.++||+|+. .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999987 999999999986542 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
+.+.+||.+++.+..+...... +. +....+.++|+.+||+. .++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~gL~~~~~~-- 149 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------AA------------------------ERREKALAMMAKVGLRPEHYD-- 149 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------HH------------------------HHHHHHHHHHHHCCCChHHhc--
Confidence 7889999999987654321000 00 01123567899999963 444
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++++|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+. +|+.++|+...+.+++|+|
T Consensus 150 ---~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 ---RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL-SYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEE
Confidence 456789999999999999999999999999999999999999999999998764444 4555677888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
No 132
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-36 Score=323.09 Aligned_cols=195 Identities=27% Similarity=0.399 Sum_probs=162.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999998 999999999876432 235799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..++.
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 133 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------R------------------------EIRKRVPAALELVGLSHKHRAL--- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCC---
Confidence 99999999998764332100 0 0011345678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++++|
T Consensus 134 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiiv-tH~~~~~~~~~d~i~~l 209 (214)
T cd03292 134 --PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVA-THAKELVDTTRHRVIAL 209 (214)
T ss_pred --hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999865 45565555 55667888899999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-36 Score=324.50 Aligned_cols=201 Identities=27% Similarity=0.336 Sum_probs=162.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 237 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+. .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999886533 235799999987 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
++.+||+||+.+.....+..... + ......+++++.++|. ...+.
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~l~~~~l~~~~~~~-- 141 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK---------E-----------------------ARKEAVLLLLVGVGLPEEVLNR-- 141 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH---------H-----------------------HHHHHHHHHHHHCCCChhHhhC--
Confidence 67899999999875433211000 0 0001124567888885 44444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|+
T Consensus 142 ---~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~ 217 (228)
T cd03257 142 ---YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-THDLGVVAKIADRVA 217 (228)
T ss_pred ---CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhcCeEE
Confidence 4468999999999999999999999999999999999999999999999875335666665 456678888999999
Q ss_pred EecCCeEEEec
Q 001957 397 LLSDGQIVYQG 407 (991)
Q Consensus 397 lL~~G~iv~~G 407 (991)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 134
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.2e-37 Score=371.36 Aligned_cols=208 Identities=24% Similarity=0.376 Sum_probs=167.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+| +.|
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~T 432 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDT 432 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceee-cch
Confidence 4999999999999999999999999999999999999998 9999999999876543 47899999976655 589
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++..- ....+.+.++ .+..+ .++. .-.|++..||.+|+. ..
T Consensus 433 i~~Ni~~~~~~---~~~~~~i~~a---l~~~~------------------------l~~~--i~~lp~Gldt~ig~~-g~ 479 (582)
T PRK11176 433 IANNIAYARTE---QYSREQIEEA---ARMAY------------------------AMDF--INKMDNGLDTVIGEN-GV 479 (582)
T ss_pred HHHHHhcCCCC---CCCHHHHHHH---HHHhC------------------------cHHH--HHhcccccCceeCCC-CC
Confidence 99999886310 0011111111 00000 1111 223678889999965 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGE 555 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999864 356777766554 6778899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 556 i~e~g~~~~l~~ 567 (582)
T PRK11176 556 IVERGTHAELLA 567 (582)
T ss_pred EEEeCCHHHHHh
Confidence 999999998863
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=330.88 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=164.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .++.++|++|+..+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999987643 2467999999988888899999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.... . . ...++.+++.+||.+..+.. +..||
T Consensus 101 nl~~~~~~-----------~-~----------------------------~~~~~~~l~~~gl~~~~~~~-----~~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----------Q-W----------------------------RDAALQALAAVGLADRANEW-----PAALS 135 (257)
T ss_pred HHHhcccc-----------h-H----------------------------HHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 99885310 0 0 01234578899998766544 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++ +|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviiv-sHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV-THDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999865445665555 566678889999999999999999
Q ss_pred ecCHH
Q 001957 406 QGPRE 410 (991)
Q Consensus 406 ~G~~~ 410 (991)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=331.65 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=170.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2356899999863 45578
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.+.....+... .+....++++++.+||.+..++. +
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRV-----P 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCC-----c
Confidence 99999988654322110 00112356788999998776655 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~-tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS-THQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999876435555555 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
No 137
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=349.15 Aligned_cols=208 Identities=26% Similarity=0.386 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
.++|+|+|+++++||-+||+|+||||||||+++|+|-++|+ +|+|++||.++..... ++.+++++| ..|++.-
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc-chHHHHH
Confidence 35999999999999999999999999999999999999999 9999999999877655 357889999 6788899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+|+||.++.. ....|.+.++-++ .+. ++. ..+.++..||.+|+ ..
T Consensus 427 Tlr~NL~lA~~----~AsDEel~~aL~q---------------------vgL------~~l--~~~~p~gl~t~lge-~G 472 (573)
T COG4987 427 TLRDNLRLANP----DASDEELWAALQQ---------------------VGL------EKL--LESAPDGLNTWLGE-GG 472 (573)
T ss_pred HHHHHHhhcCC----CCCHHHHHHHHHH---------------------cCH------HHH--HHhChhhhhchhcc-CC
Confidence 99999998742 1111211111110 010 111 22345678899985 56
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++|||+|++++++++|||||.|||+.|..++++.|.+-+ +++|+++.+||- .-.+.||+|++|++|
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL--~~le~~drIivl~~G 548 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRL--RGLERMDRIIVLDNG 548 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccc--ccHhhcCEEEEEECC
Confidence 7799999999999999999999999999999999999999999998855 577887776553 335679999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|.+++++.
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999874
No 138
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-36 Score=376.46 Aligned_cols=258 Identities=26% Similarity=0.391 Sum_probs=195.4
Q ss_pred HHhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
.++....++|+.++++.+++.- ..-.....+.....++|+|+++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~-----~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERP-----EGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----CCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 3456677777777776654310 00000001111346999999998732
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
..+.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1134899999999999999999999999999999999999998 9999999999987654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++.|++|||.++.. ....+ ...++....+ .+.. +..|++..||
T Consensus 548 ~~l-f~~TI~eNi~~~~~----~~~~~---------------------~i~~a~~~~~------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRL-FYGTLRDNIALGAP----YADDE---------------------EILRAAELAG------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhh-hhhhHHHHHhCCCC----CCCHH---------------------HHHHHHHHcC------hHHH--HHhCcccccc
Confidence 755 45799999998631 11111 1111111111 1111 2357788999
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.+...|.+.|+++. .++|+|+..|++ ++.+.||+
T Consensus 594 ~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~ 668 (694)
T TIGR03375 594 QIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDR 668 (694)
T ss_pred eecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCE
Confidence 99965 56799999999999999999999999999999999999999999999875 357777776654 56789999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999875
No 139
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.5e-36 Score=328.88 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=169.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----------------ccceEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----------------~~~~~~ 229 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 5999999999999999999999999999999999999998 999999999875321 245799
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
|++|+..+++.+||.||+.++... .+... ......++++++.+||
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 999998889999999999886421 11100 0001134567889999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..+. .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++
T Consensus 137 ~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv-sH~~~~~ 210 (252)
T TIGR03005 137 ADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV-THEMGFA 210 (252)
T ss_pred hhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHH
Confidence 876654 4568999999999999999999999999999999999999999999999876435555555 5566788
Q ss_pred HhhcCeEEEecCCeEEEecCHHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
..++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999999999999988763
No 140
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=327.16 Aligned_cols=206 Identities=19% Similarity=0.332 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35999999999999999999999999999999999999998 9999999998865332 3569999999988899
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+..+....... . +....++++++.+||++..+. .
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------E------------------------QREDRANELMEEFHIEHLRDS-----M 134 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------H------------------------HHHHHHHHHHHHcCCHHHhhc-----c
Confidence 9999999886432210000 0 011234567889999766554 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |...++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~s-H~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITD-HNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEE-cCHHHHHHhcCEEEEEeC
Confidence 568999999999999999999999999999999999999999999998764 466666654 566789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
No 141
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-37 Score=349.81 Aligned_cols=225 Identities=28% Similarity=0.402 Sum_probs=182.1
Q ss_pred CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHH
Q 001957 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (991)
Q Consensus 114 ~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKST 193 (991)
.|.++++.+||++.++. .+++++|+|+++++|+.++|+|+|||||||
T Consensus 316 ~~~~ei~~~~l~~~y~~---------------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 316 EPPIEISLENLSFRYPD---------------------------------GKPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred CCCceeeecceEEecCC---------------------------------CCcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 35788888899988642 125899999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHH
Q 001957 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (991)
Q Consensus 194 LL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 270 (991)
|+++|+|+++|+ +|+|++||.+..+.. +++.++||+|++. ++..|+||||.++..- ...+...+..++
T Consensus 363 Ll~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~-lf~gTireNi~l~~~~----~s~e~i~~al~~- 433 (559)
T COG4988 363 LLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPY-LFAGTIRENILLARPD----ASDEEIIAALDQ- 433 (559)
T ss_pred HHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCc-cccccHHHHhhccCCc----CCHHHHHHHHHH-
Confidence 999999999998 999999999987765 4689999999764 5668999999997421 111111111000
Q ss_pred HHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCC
Q 001957 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (991)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEP 350 (991)
..+.+.+.-+...||.+|+ ..++|||||+|||++||||+.+++++++|||
T Consensus 434 -----------------------------a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 434 -----------------------------AGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred -----------------------------hcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 1122333336688999995 5678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 351 TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|++||.++...|++.|.++++ ++|+++..|+ .....-+|+|++|++|+++++|.++++.+
T Consensus 484 TA~LD~etE~~i~~~l~~l~~--~ktvl~itHr--l~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 484 TAHLDAETEQIILQALQELAK--QKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred ccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcC--hHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999875 4677776543 46777899999999999999999999853
No 142
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=326.59 Aligned_cols=202 Identities=25% Similarity=0.382 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998765432 35699999998889899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCcccccccccCcc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (991)
||+||+.++..... . + +. ...++.+++.+ +|.+..++ .
T Consensus 96 tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~-----~ 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQ-----R 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhC-----c
Confidence 99999988642110 0 0 00 00123345555 35544443 3
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLV-EQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHhhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999865 46666665 5667789999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999998774
No 143
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=327.82 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=164.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++||+++|+|||||||||||++|+|+++|+. ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998620 1289999999987421 1245799999987776
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
.+||+||+.|+....+.... ......++..++.++|. +..|+
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 49999999987543221000 00011244567777763 33443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|+ ++|...++.+++|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii-~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ESYTIII-VTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cCCEEEE-EeCCHHHHHHhCCE
Confidence 456899999999999999999999999999999999999999999999984 3455555 55667788999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
No 144
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2e-36 Score=321.35 Aligned_cols=194 Identities=28% Similarity=0.415 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999988 999999999886532 235789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....+... ......++++++.+||++..++.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 134 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAF--- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC---
Confidence 89999999998754322100 00012345678899998665544
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++++|
T Consensus 135 --~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 135 --PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVA-THDLSLVDRVAHRVIIL 210 (214)
T ss_pred --hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEEEEe
Confidence 458999999999999999999999999999999999999999999999764 45565555 55667899999999999
Q ss_pred cCCe
Q 001957 399 SDGQ 402 (991)
Q Consensus 399 ~~G~ 402 (991)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=333.05 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCC-CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999886421 2467999999864 344
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||.|++.|+....+... . +....++++++.+||.+..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------E------------------------EIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------H------------------------HHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322110 0 01123567889999987777554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.| ...++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH-~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH-YMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-ChHHHhc-CCEEEEEE
Confidence 6899999999999999999999999999999999999999999999986544666666654 5556655 99999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
No 146
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-36 Score=329.03 Aligned_cols=206 Identities=31% Similarity=0.482 Sum_probs=170.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999998 9999999998754322 35689999998888899
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.+.....+... . .....++.+++.+||.+..|+. +
T Consensus 92 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------A------------------------EDDALVAAALAQVDLAHLAGRD-----Y 132 (258)
T ss_pred CHHHHHHhhhcccCCCc----------H------------------------HHHHHHHHHHHHcCCHhHhcCC-----c
Confidence 99999998643211100 0 0011245678899998766654 4
Q ss_pred CCCChhHhHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+..++.++||+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV-LHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhcCEE
Confidence 589999999999999999 59999999999999999999999999999874345665555 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
No 147
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.8e-36 Score=326.40 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=167.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999763 22389999999987542 1236799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
+ +||+||+.+....++.... . +....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------K------------------------ELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 9999999987543321000 0 0011345678899997 44443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|...++.+++|+
T Consensus 141 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-vsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 -----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVI-VTHNMQQAARISDR 212 (247)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEE-EecCHHHHHHhCCE
Confidence 4568999999999999999999999999999999999999999999999864 355555 45667789999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
No 148
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.3e-36 Score=367.95 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DT 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-ch
Confidence 4999999999999999999999999999999999999998 9999999999876643 578999999776655 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. . +.+. +.+..+..+ .++.++ .|++..||.+|+. ..
T Consensus 431 i~~NI~~~~~---~--~d~~---i~~a~~~~g------------------------l~~~i~--~lp~Gldt~i~e~-g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--SEEQ---VWQALETVQ------------------------LAELAR--SLPDGLYTPLGEQ-GN 475 (592)
T ss_pred HHHHHHhCCC---C--CHHH---HHHHHHHcC------------------------cHHHHH--hccccccccccCC-CC
Confidence 9999998631 1 1111 111111110 111122 3677889999864 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999875 357777777665 6677899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999863
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-36 Score=323.42 Aligned_cols=205 Identities=28% Similarity=0.334 Sum_probs=172.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|+...++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 5999999999999999999999999999999999999998 999999999886533 246799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.... .....++.+++.+||.+..++. +..|
T Consensus 91 ~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLPKA----------------------------------EIKERVAEALDLVQLEGYANRK-----PSQL 131 (232)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 999987644321100 0011345688899998777654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.| ...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh-~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH-DQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987534667776655 556788999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887664
No 150
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=326.26 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ ++ +|+|.++|+++... ..++.++|++|+.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 49999999999999999999999999999999999864 35 89999999987531 1235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++....+..... .....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDKA---------------------------------YLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7777 59999999875433211000 0011244567788885422222
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tvii~-tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--ARYTIIIV-THNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCeEEEE-EecHHHHHHhCCEE
Confidence 2 24567899999999999999999999999999999999999999999999984 25555554 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
No 151
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-36 Score=328.90 Aligned_cols=215 Identities=22% Similarity=0.301 Sum_probs=173.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2457899999864 68889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||++|+.|.....+... ......++.+++.+||.+..|+. +
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYE-----P 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----c
Confidence 99999988754322100 00011345678899998766644 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~-~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD-LSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-chHHhc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999865446676666554 556665 9999999999
Q ss_pred eEEEecCHHHHHH---HHHhcCCCCC
Q 001957 402 QIVYQGPRELVLE---FFASMGFRCP 424 (991)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (991)
++++.|+++++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999887642 3334444444
No 152
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-36 Score=366.75 Aligned_cols=200 Identities=29% Similarity=0.441 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|++||.++.+... ++.++||+|+..+ ++.|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSAT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchh-hccc
Confidence 4899999999999999999999999999999999999998 9999999999887653 4679999997655 4579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC------cccccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL------DVCADTMV 316 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (991)
++||+.++.. ....+. +.+.++..++ ++.+||.+
T Consensus 430 i~~Ni~~~~~----~~~~~~------------------------------------i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAP----NASDEA------------------------------------LIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCC----ccCHHH------------------------------------HHHHHHHcCCHHHHcCccccCchh
Confidence 9999998641 111111 1112222222 67789999
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|+. ...||||||||++|||+|+++|++|+|||||++||+.++..|.+.|+++. .++|+|++.|++ +....||+|+
T Consensus 470 ge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~i~ 544 (574)
T PRK11160 470 GEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDRIC 544 (574)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCEEE
Confidence 964 56799999999999999999999999999999999999999999999874 467877777665 3456799999
Q ss_pred EecCCeEEEecCHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++++.|+++++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.3e-36 Score=322.05 Aligned_cols=197 Identities=27% Similarity=0.333 Sum_probs=162.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 4999999999999999999999999999999999999998 9999999998865432 24699999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||.||+.+.....+... . +....++++++.+||.+..+..
T Consensus 101 ~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 143 (228)
T PRK10584 101 PTLNALENVELPALLRGESS----------R------------------------QSRNGAKALLEQLGLGKRLDHL--- 143 (228)
T ss_pred CCcCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC---
Confidence 99999999998654321100 0 0112346678999998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++ +.+|++++|
T Consensus 144 --~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~-~~~d~i~~l 219 (228)
T PRK10584 144 --PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD-LQLA-ARCDRRLRL 219 (228)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865446666666554 4466 559999999
Q ss_pred cCCeEEEe
Q 001957 399 SDGQIVYQ 406 (991)
Q Consensus 399 ~~G~iv~~ 406 (991)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999754
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=331.74 Aligned_cols=207 Identities=25% Similarity=0.320 Sum_probs=169.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+...+|+|.++|.++.... .++.++|++|+.. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999887111399999999886432 2357899999864 67789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|..+..+... .+....++.+++.+||.+..++ .+
T Consensus 101 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~-----~~ 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVPR----------------------------------PEMIKIVRDVLADVGMLDYIDS-----EP 141 (282)
T ss_pred CHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcC-----Cc
Confidence 99999998654322100 0011235667899999876654 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|+ .+++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-IDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999876446676666554 5566 579999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
No 155
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.6e-36 Score=376.41 Aligned_cols=256 Identities=24% Similarity=0.296 Sum_probs=192.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++.+..++|+.++.+.++|.- +..+....+....+++|+|+++.++.
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~-----~~~~~~~~~~~~~~I~~~~vsf~y~~---------------------------- 485 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFI-----NKKKRTELNNLNGDIVINDVSYSYGY---------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHcCCCccc-----ccccccCCCCCCCcEEEEEEEEEcCC----------------------------
Confidence 455666777777776554410 00000111122346999999998631
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
.+.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++
T Consensus 486 -----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 486 -----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred -----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 124899999999999999999999999999999999999998 9999999999876653 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+ ++.||+|||.++.+. ....+.+. ++....+ .++. +..|+...||.
T Consensus 558 ~l-f~gTI~eNi~l~~~~---~~~~~~i~---------------------~a~~~a~------l~~~--i~~lp~gldt~ 604 (708)
T TIGR01193 558 YI-FSGSILENLLLGAKE---NVSQDEIW---------------------AACEIAE------IKDD--IENMPLGYQTE 604 (708)
T ss_pred ee-hhHHHHHHHhccCCC---CCCHHHHH---------------------HHHHHhC------CHHH--HHhcccccCcE
Confidence 55 567999999986321 11111111 1111000 1111 23577889999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
||+. ...||||||||++|||||+++|++|+||||||+||+.++..+++.|+++ .++|+|+..|++ ++.+.+|+|
T Consensus 605 i~e~-G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i 678 (708)
T TIGR01193 605 LSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKI 678 (708)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEE
Confidence 9864 5679999999999999999999999999999999999999999999874 356777666554 567889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|+++++++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
No 156
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=325.48 Aligned_cols=212 Identities=25% Similarity=0.288 Sum_probs=168.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4999999999999999999999999999999999998741 012899999999875432 23578999999888999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.++.+..+..... .+....++++++.+||.+..+.. -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSK--------------------------------KELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCCH--------------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 99999999875432110000 00112345678888986421111 1344
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|+ ++|...++.+++|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii-~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KDMTIVL-VTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCEEEE-EeCCHHHHHHhcCEEEEEEC
Confidence 57899999999999999999999999999999999999999999999974 2555555 45666788899999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988774
No 157
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=338.74 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCccc-------cceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (991)
+.+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.|+|+++..... ++.++||+|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986311 128999999998865432 246999999864
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 237 --HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+.+||.+++.+.......... .. .+. .+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~--~~---~~~-----------------------~~~~~~~~~~L~~~gL~~~~~- 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGR--WW---QRF-----------------------GWRKRRAIELLHRVGIKDHKD- 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccc--cc---ccH-----------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 57889999999864321100000 00 000 001123567899999975322
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+.+..+.+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.+. +|+.++|+...+.+++|+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~-tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT-TILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhCCE
Confidence 123567799999999999999999999999999999999999999999999998753344 455567788899999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|+|++.|+.+++.
T Consensus 229 i~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 229 INVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998774
No 158
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.6e-36 Score=324.77 Aligned_cols=211 Identities=23% Similarity=0.332 Sum_probs=170.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998764332 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++....... ......... ......++++++.+||++..++. +
T Consensus 93 tv~~nl~~~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (242)
T TIGR03411 93 TVFENLELALPRDKSV--FASLFFRLS------------------------AEEKDRIEEVLETIGLADEADRL-----A 141 (242)
T ss_pred CHHHHHHHhhhccccc--ccccccccH------------------------HHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 9999999864321000 000000000 00112356788999998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.++||+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVV-EHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEE-ECCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999854 4555555 56677889999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+.+++.
T Consensus 219 ~~~~~~~~~~~~ 230 (242)
T TIGR03411 219 SVLAEGSLDQVQ 230 (242)
T ss_pred eEEeeCCHHHHh
Confidence 999999987763
No 159
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-36 Score=327.05 Aligned_cols=221 Identities=23% Similarity=0.306 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999998765332 2348899999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.++....... +....... + +... + ...+....++++++.+||.+..+..
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~--------~-~~~~---~----~~~~~~~~~~~~l~~~gl~~~~~~~----- 150 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLK--------T-PAFR---R----AESEALDRAATWLERVGLLEHANRQ----- 150 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcc--------c-cccc---c----chhHHHHHHHHHHHhCChhhhhhCC-----
Confidence 99999999865321000 00000000 0 0000 0 0001112356678899997666544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|++ +|...++.++||++++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLI-EHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE-eCCHHHHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865335555555 5667788999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988763
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=331.15 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999998 999999999875421 2356899999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
.++..||+||+.|.....+... . +....++++++.+||.. ..+.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~- 141 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------E------------------------EAEALAREKLALVGISESLFEK- 141 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhhC-
Confidence 3445799999998654322100 0 00113456788899963 4443
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+++ |..+++.+++|++
T Consensus 142 ----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivs-H~~~~~~~~~d~i 215 (280)
T PRK13649 142 ----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVT-HLMDDVANYADFV 215 (280)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999865 456666654 5667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 161
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.9e-36 Score=321.37 Aligned_cols=197 Identities=25% Similarity=0.343 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35999999999999999999999999999999999999998 999999999875432 35799999998888999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.. ...+..+++.+||++..|.. +..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKK-----AKQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhh-----HhhC
Confidence 9998865432110 01234578889998766654 4579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++++.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|+++ |...++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSS-HILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEc-CCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999864 456666655 5566888999999999999999
Q ss_pred EecCHH
Q 001957 405 YQGPRE 410 (991)
Q Consensus 405 ~~G~~~ 410 (991)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
No 162
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-36 Score=330.69 Aligned_cols=203 Identities=28% Similarity=0.374 Sum_probs=168.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCC-CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~~ 240 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4999999999999999999999999999999999999998 999999999886432 2357999999864 4677
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.||+.|.....+... .+....++++++.+||.+..++.
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~----- 133 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRS----- 133 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCC-----
Confidence 999999998754322110 00112346678899998776654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++ |+..++ ..+|+|++|++
T Consensus 134 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~t-H~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYIT-HNLEEL-HDADRIIVMDR 210 (274)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cCHHHH-hhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 466666654 555666 56999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-36 Score=329.14 Aligned_cols=204 Identities=27% Similarity=0.377 Sum_probs=167.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC--c---cccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 4999999999999999999999999999999999999998 9999999998742 1 12356999999864 345
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||.||+.+.....+... . +....++.+++.+||.+..++.
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~---- 133 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------A------------------------EITRRVDEALTLVDAQHFRHQP---- 133 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhcCC----
Confidence 6789999988654322110 0 0011345678899998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+..++.+++|++++|+
T Consensus 134 -~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~-vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 134 -IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVII-SSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred -chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 4555555 5567778889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
No 164
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.4e-36 Score=377.16 Aligned_cols=260 Identities=22% Similarity=0.258 Sum_probs=192.4
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCC-CCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (991)
++....++|+.++++.+++.-......+...... +.....++|+|+++.++.
T Consensus 437 ~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 489 (710)
T TIGR03796 437 QELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP--------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC---------------------------
Confidence 4566677788777766544110000000000000 111347999999998732
Q ss_pred cCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecC
Q 001957 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (991)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (991)
..+.+|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 490 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 490 -----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred -----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 1134999999999999999999999999999999999999998 9999999999876643 5789999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+ ++.|++|||.++. +....+... ++....+ .++. +..|+...||
T Consensus 562 ~~l-f~gTi~eNi~l~~----~~~~~~~i~---------------------~al~~~~------l~~~--i~~lp~gl~t 607 (710)
T TIGR03796 562 IFL-FEGTVRDNLTLWD----PTIPDADLV---------------------RACKDAA------IHDV--ITSRPGGYDA 607 (710)
T ss_pred Chh-hhccHHHHhhCCC----CCCCHHHHH---------------------HHHHHhC------CHHH--HHhCcCcccc
Confidence 655 4689999998752 111111111 1111000 1111 2346778899
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..|++.|++ .++|+|+..|++ ++...||+
T Consensus 608 ~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~ 680 (710)
T TIGR03796 608 ELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDE 680 (710)
T ss_pred eeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCE
Confidence 99965 567999999999999999999999999999999999999999999986 357777766554 56677999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|+++++|+++++++
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999874
No 165
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=326.68 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|++++ + +|+|.++|+++... ..++.++|++|+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI---EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCc---ceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 499999999999999999999999999999999999874 5 99999999987532 1235699999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ +||+||+.|..+..+... . +....++++++.+|+.......
T Consensus 103 ~~~~-~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 147 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIHGANK----------K------------------------DLDGVVENALRSAALWDETSDR 147 (258)
T ss_pred ccCc-ccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcchhhh
Confidence 7777 999999998754322100 0 0011245678888874211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.+++|+|
T Consensus 148 ~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiiv-sH~~~~~~~~~d~i 223 (258)
T PRK14268 148 L-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIV-THNMQQAARISDYT 223 (258)
T ss_pred h-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEE-ECCHHHHHHhCCEE
Confidence 1 234568999999999999999999999999999999999999999999999853 5555554 56677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 224 ~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 224 GFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
No 166
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.6e-36 Score=320.56 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=162.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999998 999999999876432 235789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+.... +....++.+++.+||.+..++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~---- 133 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASGD----------------------------------DIRRRVSAALDKVGLLDKAKN---- 133 (222)
T ss_pred ccccHHHHHHhHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCChhhhhC----
Confidence 999999999987543321100 001124567888999876654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|..+++..++|+|++|
T Consensus 134 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 134 -FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLM-ATHDIGLISRRSYRMLTL 210 (222)
T ss_pred -CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 3468999999999999999999999999999999999999999999999865 3555544 566777888999999999
Q ss_pred cCCeEE
Q 001957 399 SDGQIV 404 (991)
Q Consensus 399 ~~G~iv 404 (991)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-36 Score=328.97 Aligned_cols=204 Identities=28% Similarity=0.390 Sum_probs=168.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--c---ccceEEEEecCCC-CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++++ +|+|.++|+++... . .++.++|++|+.. .++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4999999999999999999999999999999999999998 99999999987421 1 2357999999853 445
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+.....+.. + . +....+..+++.+||.+..|+.
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~L~~~~~~~---- 134 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------E------------------------EVEKRVKEALKAVGMEGFENKP---- 134 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCchhhcCC----
Confidence 689999998864321110 0 0 0111345678999998777655
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|...++.++||++++|+
T Consensus 135 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~v-tH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 135 -PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIIS-THDVDLVPVYADKVYVMS 211 (275)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999865 45555554 566778889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998875
No 168
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=323.78 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=166.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4999999999999999999999999999999999999998 999999999875432 2457899999877665 79
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+||+.+.....+. ....++.+++.+||+ +..+ ..+
T Consensus 93 v~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYAT-----RDV 129 (241)
T ss_pred HHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhh-----CCc
Confidence 99999875432100 001234578889996 3444 345
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|+ ++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~-~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW-ITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeccHHHHHHhCCEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999986534566555 456677889999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
No 169
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=334.07 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDN- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~- 236 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 99999999987532 12357899999852
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.++.+||+||+.|+....+... .+....++++++.+||. ...++
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISK- 141 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhC-
Confidence 4446899999998754322100 00112356688999996 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+.+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvli-vsH~~~~~~~~~d~v 215 (287)
T PRK13641 142 ----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVIL-VTHNMDDVAEYADDV 215 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEE
Confidence 4568999999999999999999999999999999999999999999999854 4555555 567788899999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 170
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=324.17 Aligned_cols=203 Identities=28% Similarity=0.341 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC------c---cccceEEEEecCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~---~~~~~~~yv~Q~d~ 236 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|+..
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999998 9999999998631 1 11356899999998
Q ss_pred CCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 237 HIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
+++.+||+||+.+.. ...+... . +....++.+++.+||++..+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------D------------------------QALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 2211100 0 0012346678899998766654
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|+..++.+++|++
T Consensus 139 -----~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~-sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 -----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIV-THEVEVARKTASRV 211 (242)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhcCEE
Confidence 468999999999999999999999999999999999999999999999854 45665555 55667888999999
Q ss_pred EEecCCeEEEecCHHHH
Q 001957 396 ILLSDGQIVYQGPRELV 412 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (991)
++|.+|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
No 171
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-36 Score=324.96 Aligned_cols=212 Identities=22% Similarity=0.301 Sum_probs=167.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCC--Cc---cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EF---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~--~~---~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. .. ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4999999999999999999999999999999999998762 012899999999875 21 1235799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++...++.....+ .....++++++.+||....... -+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDR-LN 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhh-hc
Confidence 99999999998754321100000 0011245577788874321111 13
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++ +|..+++.++||+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLV-THSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEE-ECCHHHHHhhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999853 4555555 55667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
No 172
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-36 Score=317.94 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=162.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998865332 357999999988888999999998
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
++........ + .....++++++.+||.+..++. +..|||||
T Consensus 93 ~~~~~~~~~~---------~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKLT---------A-------------------------EDRQAIEVALARVGLAGLEKRL-----PGELSGGE 133 (211)
T ss_pred cccccccCcc---------H-------------------------HHHHHHHHHHHHcCCHHHHhCC-----cccCCHHH
Confidence 8643110000 0 0112346688999998766654 46899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
|||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+ ++|...++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM-VTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999986544556555 566777889999999999999998764
No 173
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.2e-36 Score=325.72 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----------------cccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----------------~~~~~~ 228 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999998 99999999987421 113578
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC
Q 001957 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (991)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (991)
+|++|++.+++.+||+||+.++.. ..+.. . ......+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-H---------------------------------HHHHHHHHHHHHHcC
Confidence 999999988999999999987542 11110 0 001123456788999
Q ss_pred Ccccc-cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 308 LDVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 308 L~~~~-dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
|.+.. + ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..
T Consensus 141 l~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiiv-sH~~~ 213 (257)
T PRK10619 141 IDERAQG-----KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVV-THEMG 213 (257)
T ss_pred CChhhhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHH
Confidence 97643 3 34568999999999999999999999999999999999999999999999865 45565555 56677
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 888899999999999999999988764
No 174
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.7e-36 Score=323.57 Aligned_cols=213 Identities=27% Similarity=0.326 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 35999999999999999999999999999999999995 577 9999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+|++.+.......... ....+ ..+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEPLD---------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------ccccc---------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999986542210000 00000 000112356788999997 34554332
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDII 396 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vi 396 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~v-sH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLII-THYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEE-EecHHHHHhhcCCeEE
Confidence 25999999999999999999999999999999999999999999999864 45666655 5566678887 89999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
No 175
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-36 Score=373.93 Aligned_cols=223 Identities=25% Similarity=0.394 Sum_probs=175.0
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
..++|+|+++.++. + +++.+|+|+|++|+|||.++|+||||||||||++
T Consensus 477 ~~I~~~nVsf~Y~~------------------------------~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 477 GLIEFQDVSFSYPN------------------------------R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred CeEEEEEEEEECCC------------------------------C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46999999998731 0 1235999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
+|+|+++|+ +|+|++||+++++... ++.++||+|++. +++.||+|||.++..- ...+. +.+..+.+
T Consensus 526 lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~-lF~gTIreNI~~g~~~----~~~e~---i~~al~~a 594 (711)
T TIGR00958 526 LLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPV-LFSGSVRENIAYGLTD----TPDEE---IMAAAKAA 594 (711)
T ss_pred HHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcc-ccccCHHHHHhcCCCC----CCHHH---HHHHHHHc
Confidence 999999998 9999999999877653 478999999765 5568999999986321 11111 11111111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+ .++. +-.|++..||.+|+. ...||||||||++|||+|+++|+||+||||||+
T Consensus 595 ~------------------------l~~~--i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSa 647 (711)
T TIGR00958 595 N------------------------AHDF--IMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647 (711)
T ss_pred C------------------------CHHH--HHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccc
Confidence 0 0111 224677889999964 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||+.+...+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|+++++|+++++++
T Consensus 648 LD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 648 LDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred cCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 99999999988 322 2456777766554 5678899999999999999999999864
No 176
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-36 Score=321.01 Aligned_cols=204 Identities=26% Similarity=0.391 Sum_probs=171.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|+|++|+||++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 999999999886532 2467999999998899999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.++....+... . .....+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------K------------------------EIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9998753321100 0 00112456788899987766544 5799
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++..+.|+|+++| ..+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH-~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH-DFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986644666666654 5578899999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
No 177
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.4e-36 Score=321.36 Aligned_cols=205 Identities=28% Similarity=0.398 Sum_probs=171.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (991)
.+|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|+.
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 5999999999999999999999999999999999999998 9999999998764332 36799999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+....++.... .....++++++.++|....|+. ++.|
T Consensus 91 enl~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPKA----------------------------------KIKARVEELLELVQLEGLGDRY-----PNQL 131 (237)
T ss_pred HHHHhHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHhHhhCC-----hhhC
Confidence 999987543321000 0011245678889997666654 4579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||+||++||++|+.+|++++|||||+|||..+...+.+.|+++++..+.|+|+++| ...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH-~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH-DQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHhhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999986533566766655 556889999999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988774
No 178
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=342.11 Aligned_cols=207 Identities=22% Similarity=0.308 Sum_probs=173.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (991)
|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999987531 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.. ....++++++.+||++..|.. ++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRY-----PG 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCC-----cc
Confidence 999999864200 001245678999998776654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|+..++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~-vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY-VSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE-EecCHHHHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999987644555555 4567789999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001957 403 IVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 433 (991)
++..|+++++. ..|.....|.|+
T Consensus 207 i~~~g~~~~i~--------~~p~~~~~~~~~ 229 (352)
T PRK11144 207 VKAFGPLEEVW--------ASSAMRPWLPKE 229 (352)
T ss_pred EEEecCHHHHH--------hCcchhhhhccc
Confidence 99999999884 245555555554
No 179
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-36 Score=327.95 Aligned_cols=209 Identities=22% Similarity=0.330 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5999999999999999999999999999999999999998 999999999875432 2356999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+.++..... .. ... . . ......++.+++.++|++..++.+ +
T Consensus 102 v~e~l~~~~~~~~-~~-~~~--------------~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 146 (265)
T PRK10575 102 VRELVAIGRYPWH-GA-LGR--------------F-G-------------AADREKVEEAISLVGLKPLAHRLV-----D 146 (265)
T ss_pred HHHHHHhCccccc-cc-ccC--------------C-C-------------HHHHHHHHHHHHHcCCHHHhcCCc-----c
Confidence 9999988642100 00 000 0 0 000123466888999987666544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~-sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV-LHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCe
Confidence 7999999999999999999999999999999999999999999999875445565555 556778899999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987653
No 180
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-36 Score=327.23 Aligned_cols=208 Identities=24% Similarity=0.376 Sum_probs=170.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 5999999999999999999999999999999999999998 9999999998764322 356899999998889999
Q ss_pred HHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 243 VRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|+||+.++..-. +..... . +.....++++++.+||.+..|+ .+
T Consensus 98 v~~~~~~~~~~~~~~~~~~---~----------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~ 141 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW---R----------------------------KEDEEAVTKAMQATGITHLADQ-----SV 141 (265)
T ss_pred HHHHHHhCcccccccccCC---C----------------------------HHHHHHHHHHHHHcCCHHHhcC-----Cc
Confidence 999998753110 000000 0 0001234668889999876654 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~-tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV-LHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999875335555554 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
No 181
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.1e-36 Score=321.37 Aligned_cols=207 Identities=23% Similarity=0.283 Sum_probs=167.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCeeeEEEECCeeCCCccc-cceEEEEecCCC--CCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~----~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (991)
+|+|||+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|+.. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999988 7 9999999998865432 257999999874 556
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|+.|++.+.....+... . .....++++++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS---------K-------------------------QARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH---------H-------------------------HHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987653221100 0 0112356688999997320 11134
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++ +|..+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI-THDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865335555555 556678889999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988774
No 182
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=323.56 Aligned_cols=210 Identities=21% Similarity=0.290 Sum_probs=166.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 4999999999999999999999999999999999998631 01299999999987532 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++.+..+...+ ......+.++++.++|.+..+... +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~ 158 (267)
T PRK14237 114 A-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL-H 158 (267)
T ss_pred c-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-c
Confidence 6 6999999987543211000 001122455788888864332222 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|..+++.++||++++|
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiii~-tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KNYTIIIV-THNMQQAARASDYTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cCCEEEEE-ecCHHHHHHhcCEEEEE
Confidence 5667899999999999999999999999999999999999999999999974 35555555 55666889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 236 YLGDLIEYDKTRNIF 250 (267)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
No 183
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-36 Score=330.56 Aligned_cols=205 Identities=19% Similarity=0.283 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----c----cccceEEEEecCCC-
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~----~~~~~~~yv~Q~d~- 236 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. . ..++.++|++|+..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999998742 1 12357899999863
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
.+...||+||+.|+....+... . +....++.+++.++|+ +..++
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------Q------------------------EAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCChhHhcC-
Confidence 2345799999998653221100 0 0011245678889994 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++.++||++
T Consensus 147 ----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiii-sH~~~~~~~~~d~i 221 (289)
T PRK13645 147 ----SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMV-THNMDQVLRIADEV 221 (289)
T ss_pred ----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEE
Confidence 4468999999999999999999999999999999999999999999999875445565554 56667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=325.45 Aligned_cols=208 Identities=23% Similarity=0.316 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++| + +|+|+++|+++... ..++.++|++|+.
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999987531 1245789999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||.||+.|+.+.++.... +. +....++++++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARS--------KA------------------------ELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccc--------hH------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7776 4999999987643321100 00 0011345678888986422111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|+.+++.+++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiiv-tH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIV-THSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEE-EcCHHHHHhhCCEE
Confidence 1 234578999999999999999999999999999999999999999999999853 4555554 55677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
No 185
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=324.12 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+++... ..++.++|++|+.
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA---EGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc---ceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 49999999999999999999999999999999999986 35 89999999987421 1245799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ +||+||+.+.......... . +....++++++.++|.......
T Consensus 104 ~~~~-~tv~~nl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 149 (260)
T PRK10744 104 TPFP-MSIYDNIAFGVRLFEKLSR---------A------------------------EMDERVEWALTKAALWNEVKDK 149 (260)
T ss_pred ccCc-CcHHHHHhhhHhhcCCCCH---------H------------------------HHHHHHHHHHHHcCCChhhHHH
Confidence 7776 8999999987543210000 0 0011345678888874321111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+++|++
T Consensus 150 ~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~~tiii~-sH~~~~~~~~~d~i 225 (260)
T PRK10744 150 L-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QDYTVVIV-THNMQQAARCSDYT 225 (260)
T ss_pred H-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHHhCCEE
Confidence 1 23456899999999999999999999999999999999999999999999984 35555554 55667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++..|+.+++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 226 AFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 186
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.6e-36 Score=321.59 Aligned_cols=202 Identities=27% Similarity=0.323 Sum_probs=165.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ..+|++|+..+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999998 9999999998865432 248999999889999999999
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.+..+....... + .+....++++++.+||++..++. +..||||
T Consensus 76 ~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------K------------------------SERRAIVEEHIALVGLTEAADKR-----PGQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------H------------------------HHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHH
Confidence 986421000000 0 00112345678899998766654 4589999
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-THDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999999876445565555 55667889999999999999999998
Q ss_pred CHHHH
Q 001957 408 PRELV 412 (991)
Q Consensus 408 ~~~~~ 412 (991)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 75543
No 187
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=319.40 Aligned_cols=201 Identities=23% Similarity=0.380 Sum_probs=167.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998764322 357999999998899999999998
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+..... .... . .....++++++.+||++..|+.+ +.|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 763210 0000 0 00123466889999987776554 5899999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
||||+||++++.+|++++|||||+|||..++..+.+.|+++++..+.|+|++ +|...++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV-SHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999866445666665 556678889999999999999999999
Q ss_pred HHHHH
Q 001957 409 RELVL 413 (991)
Q Consensus 409 ~~~~~ 413 (991)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
No 188
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-36 Score=297.87 Aligned_cols=205 Identities=27% Similarity=0.395 Sum_probs=178.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++.- -..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45999999999999999999999999999999999999998 99999999998753 34569999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
+|++|+.+++|.... .|+ .++.+.+...||.+..+ +++-+|
T Consensus 93 dNvafgL~l~Gi~k~-------~R~---------------------------~~a~q~l~~VgL~~~~~-----~~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QRR---------------------------EIAHQMLALVGLEGAEH-----KYIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HHH---------------------------HHHHHHHHHhCcccccc-----cceEee
Confidence 999999999887532 111 24566788999987765 455689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec--CCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~--~G~ 402 (991)
||||||||.|||||+.+|++|+||||+.+||.-++.++...|-++.+..++ -++.|+|..+|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999999886554 45556789999999999999998 589
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
|+..-+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877763333
No 189
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.3e-36 Score=326.69 Aligned_cols=206 Identities=25% Similarity=0.316 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+. .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235699999985 4
Q ss_pred CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (991)
+++.+||+||+.+..... +.. . ......++++++.+||. ...|.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------E------------------------SEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998764311 100 0 00112345678899995 55554
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|....+.+++|+
T Consensus 147 -----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv-sH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 -----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFI-THDLRLVQSFCQR 220 (265)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHHHhcE
Confidence 4468999999999999999999999999999999999999999999999875335565554 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
No 190
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.5e-36 Score=316.74 Aligned_cols=195 Identities=24% Similarity=0.387 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999998 99999999987421 12367999999988888
Q ss_pred CCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.++.. .++... . +....++.+++.+||++..++.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 132 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSK----------A------------------------EAEERALELLEKVGLADKADAY--- 132 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhhC---
Confidence 9999999998642 111100 0 0112345678889998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.+++|++++|
T Consensus 133 --~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~-~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 133 --PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVV-VTHEMGFAREVADRVIFM 208 (213)
T ss_pred --ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999875 4556555 556777889999999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
No 191
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.9e-36 Score=339.32 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=168.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-------cccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (991)
|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999998 99999999987532 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+.+.... . +....++++++.+||++..|.. +.
T Consensus 92 v~enl~~~~~~~~~------------~------------------------~~~~~~~~~l~~~gL~~~~~~~-----~~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------S------------------------ERRISFERVIELLGIGHLLGRL-----PG 130 (354)
T ss_pred HHHHHHHHhhccCh------------h------------------------HHHHHHHHHHHHcCChhHhcCC-----hh
Confidence 99999987532100 0 0012346688999998777654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiiv-tH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV-SHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999999876445555555 566778999999999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=321.27 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---cCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~---~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~ 236 (991)
+.+|+|||+.+++|++++|+||||||||||+++|+|+ .++. ..+|+|.++|+++... ..++.++|++|+..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999997 3331 1289999999987542 12357999999987
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++ .||+||+.++.+.++.... + .....++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN-----A----------------------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999987543321100 0 00113456788888864322222
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|+..++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiv-tH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIV-THNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHhhCCEEE
Confidence 24567899999999999999999999999999999999999999999999984 35565554 566678889999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
No 193
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=325.20 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=168.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (991)
.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 4999999999999999999999999999999999999998 999999999876422 2467999999863 67889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.++....+... . +....++++++.+||.+..++. +
T Consensus 98 tv~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIPR----------E------------------------EMIKRVDEALLAVNMLDFKTRE-----P 138 (277)
T ss_pred CHHHHHHhhHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCHhHhhCC-----c
Confidence 99999988654221100 0 0011346678889997766654 5
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~-sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI-THDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHH-hCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999876436666665 45566665 69999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
No 194
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=332.31 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=167.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++|++++|+|||||||||||++|+|..++. ...+|+|.+||+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999998632 2346799999987766
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
..||+||+.|+....+... .+ .....+...++.++|.+..++.++
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~- 220 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD- 220 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh-
Confidence 5899999998754321100 00 001123456777777654455554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+....|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|....+.+++|+|++|
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~-iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIII-VTHSMAQAQRISDETVFF 297 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999998753 455544 556677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999884
No 195
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=324.21 Aligned_cols=209 Identities=26% Similarity=0.371 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 235699999998888889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||.||+.++...... .. .... ......++++++.+||.+..++. +
T Consensus 92 tv~~~i~~~~~~~~~-----~~-------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 136 (255)
T PRK11231 92 TVRELVAYGRSPWLS-----LW-------------GRLS------------AEDNARVNQAMEQTRINHLADRR-----L 136 (255)
T ss_pred cHHHHHHhccchhhh-----hc-------------cCCC------------HHHHHHHHHHHHHcCCHHHHcCC-----c
Confidence 999999986321000 00 0000 00112346678899998766654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~-tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTV-LHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECCHHHHHHhcCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999765 45565555 56677899999999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
No 196
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=325.30 Aligned_cols=216 Identities=23% Similarity=0.306 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--------ccceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--------~~~~~~yv~Q~d~ 236 (991)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|+..
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999999875222599999999875321 1356899999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++.+||+||+.+....... ...+. ... ...+....++++++.+||.+..|..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~----~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC----FSW-------------FTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh----ccc-------------ccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 89999999999876421100 00000 000 0000112356788999998766654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++ +|+.+++.+++|+|+
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~-tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT-LHQVDYALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999876445555555 566678899999999
Q ss_pred EecCCeEEEecCHHHH
Q 001957 397 LLSDGQIVYQGPRELV 412 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (991)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
No 197
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.8e-36 Score=393.38 Aligned_cols=230 Identities=23% Similarity=0.310 Sum_probs=181.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
.+|+|+||++.+.. + ....||+|+|++|+||+.+||+||||||||||++
T Consensus 1164 g~I~f~nVsF~Y~~------------------------------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~ 1212 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS------------------------------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMS 1212 (1466)
T ss_pred ceEEEEEEEEECCC------------------------------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 47999999998731 1 1235999999999999999999999999999999
Q ss_pred HHhcCcCCC---------------------------------------------------CCeeeEEEECCeeCCCccc-
Q 001957 197 ALAGKLDPT---------------------------------------------------LKVSGTVTYNGHDMDEFVP- 224 (991)
Q Consensus 197 ~LaG~~~~~---------------------------------------------------~~~~G~I~~nG~~~~~~~~- 224 (991)
+|.|+++|. ...+|+|++||+++.+...
T Consensus 1213 LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~ 1292 (1466)
T PTZ00265 1213 LLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLK 1292 (1466)
T ss_pred HHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHH
Confidence 999999981 0028999999999987653
Q ss_pred --cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 225 --~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
++.++||+|++. ++..||+|||.|+.. ....+. +.+..+.+++ ++
T Consensus 1293 ~lR~~i~~V~Qep~-LF~gTIreNI~~g~~----~at~ee---I~~A~k~A~l------------------------~~- 1339 (1466)
T PTZ00265 1293 DLRNLFSIVSQEPM-LFNMSIYENIKFGKE----DATRED---VKRACKFAAI------------------------DE- 1339 (1466)
T ss_pred HHHhhccEeCCCCc-cccccHHHHHhcCCC----CCCHHH---HHHHHHHcCC------------------------HH-
Confidence 578999999765 558999999999731 111111 1111111111 11
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
.+..|++.+||.||+ ....||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++....++|+|+..|
T Consensus 1340 -fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1340 -FIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred -HHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 134689999999995 456699999999999999999999999999999999999999999999874224677777665
Q ss_pred cCCchhHhhcCeEEEecC----CeEE-EecCHHHHHH
Q 001957 383 QPAPETYDLFDDIILLSD----GQIV-YQGPRELVLE 414 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~----G~iv-~~G~~~~~~~ 414 (991)
+. ++.+.||+|++|++ |+++ ++|+++++++
T Consensus 1418 Rl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1418 RI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred hH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 54 67888999999999 9955 8999999863
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.6e-35 Score=314.37 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=164.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999998 999999999875432 2467999999998889999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+...... ... . .....++++++.+||++..++. ++.||
T Consensus 90 n~~~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN--------A-------------------------EQQEKVVDAAQQVGIADYLDRL-----PEQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc--------H-------------------------HHHHHHHHHHHHcCcHHHhhCC-----cccCC
Confidence 9987542110 000 0 0011345678999998766644 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+..+.|+|+ ++|..+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~-vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM-VTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999986533555555 4566678889999999999999999
Q ss_pred ecC
Q 001957 406 QGP 408 (991)
Q Consensus 406 ~G~ 408 (991)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 199
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=320.43 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=166.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999985 3111289999999987532 1246799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++.+..+.... . +....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR---------S------------------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999886543211000 0 00113456778888854211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.++||++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIV-THNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEE-ECCHHHHHhhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999864 4555554 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 200
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=319.62 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=164.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|+..++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 49999999999999999999999999999999999853 4211389999999987431 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... + .....++++++.+++.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-----Q----------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221100 0 00112345677777743211111 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|+.+++.++||+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLV-TRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEE-ECCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999753 4555554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
No 201
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=322.20 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=166.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|.- ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 49999999999999999999999999999999999986410 0299999999987421 1235799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.++....+.... . .....++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------K------------------------DLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999987643221000 0 01123456788888742111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|...++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii-vsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVI-VTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHHHHhCCEEEEE
Confidence 44578999999999999999999999999999999999999999999999853 455555 556677889999999999
Q ss_pred c------CCeEEEecCHHHHH
Q 001957 399 S------DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (991)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 7 79999999988774
No 202
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.3e-36 Score=316.01 Aligned_cols=194 Identities=31% Similarity=0.443 Sum_probs=159.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCC-CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.+||+++.... .++.++|++|+.. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999998 999999999876432 2357899999864 4678
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.+.....+... . .....++++++.+||++..+..
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~----- 131 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------E------------------------EIEERVEEALELVGLEGLRDRS----- 131 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCcHhhhcCC-----
Confidence 999999988654321100 0 0011345678899997666544
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++..+||+|++|++
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIV-THDLDLLLELADRVIVLED 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999999875 35555554 5667788899999999998
Q ss_pred Ce
Q 001957 401 GQ 402 (991)
Q Consensus 401 G~ 402 (991)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
No 203
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=319.69 Aligned_cols=210 Identities=22% Similarity=0.317 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc-----ccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4999999999999999999999999999999999998741 012899999999885321 245699999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.|.....+.... . .....++.+++.+||....... -+
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------K------------------------ELDKIVEWALKKAALWDEVKDD-LK 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCchhhhhH-hh
Confidence 6 9999999987543321100 0 0011234567788874211011 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|...++.++||++++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiiv-sH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIV-THNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEE-EcCHHHHHHhcCEEEEE
Confidence 45678999999999999999999999999999999999999999999999864 4565555 45667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998874
No 204
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.8e-35 Score=322.93 Aligned_cols=208 Identities=29% Similarity=0.408 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35999999999999999999999999999999999999998 9999999998765432 34689999998778889
Q ss_pred CHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 242 TVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
||+||+.++.. ..... .. +. .+....++++++.+||.+..|+.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------~~-~~--------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLW----------------AG-DS--------------PHDAAVVDRALARTELSHLADRD----- 134 (256)
T ss_pred CHHHHHHhcchhhhhhc----------------cC-CC--------------HHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 99999988531 10000 00 00 00012345678899997666654
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|..+++.+++|+|++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAA-LHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhCCEEEEEeC
Confidence 458999999999999999999999999999999999999999999999864 45555555 5566788899999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999987753
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=319.03 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~---~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+++.... .++.++|++|+..+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 59999999999999999999999999999999999975 45 999999999886532 2357899999887776
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.||+||+.++...++.... . ......++.+++.++|........ +.
T Consensus 93 -~tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 7999999987543321000 0 000112456788889853211111 24
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMV-THNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-ecCHHHHHhhCcEEEEEE
Confidence 5678999999999999999999999999999999999999999999999753 5555554 566778899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 206
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-35 Score=356.99 Aligned_cols=255 Identities=23% Similarity=0.321 Sum_probs=191.8
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+.+.- +....+.+...++++|+++.++.
T Consensus 285 ~~~~~~~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 328 (544)
T TIGR01842 285 SGARQAYKRLNELLANYPSRD--------PAMPLPEPEGHLSVENVTIVPPG---------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHhCCcccc--------CCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 456666777777765544310 01111223346999999988631
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 329 ----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 329 ----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred ----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 1135899999999999999999999999999999999999998 9999999999876543 46899999987
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .|++||+.+... ..+.+...+. .+. ...++.++ .|++..||.
T Consensus 402 ~lf~-~ti~~Ni~~~~~----~~~~~~~~~~---~~~------------------------~~~~~~i~--~l~~gl~t~ 447 (544)
T TIGR01842 402 ELFP-GTVAENIARFGE----NADPEKIIEA---AKL------------------------AGVHELIL--RLPDGYDTV 447 (544)
T ss_pred cccc-ccHHHHHhccCC----CCCHHHHHHH---HHH------------------------hChHHHHH--hCccccccc
Confidence 6665 599999985431 1111111110 000 00122333 356677898
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++.. .++|+|++.|++ +..+.||+|
T Consensus 448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~--~~~~~~d~i 523 (544)
T TIGR01842 448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP--SLLGCVDKI 523 (544)
T ss_pred cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH--HHHHhCCEE
Confidence 885 4677999999999999999999999999999999999999999999998743 467777777665 356789999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|+++++.+
T Consensus 524 ~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 524 LVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEECCEEEeeCCHHHHhh
Confidence 9999999999999988753
No 207
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=320.57 Aligned_cols=210 Identities=21% Similarity=0.320 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|+++|+++... ..++.++|++|+..++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 49999999999999999999999999999999999986 3211389999999987521 1235799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+. ||+||+.|..+..+...+ . +....++.+++.++|.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------K------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999987543221000 0 00112445677888753211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+++|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-tH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIV-THNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEE-EcCHHHHHHhCCEEEEE
Confidence 45578999999999999999999999999999999999999999999999753 5565555 45667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998864
No 208
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-33 Score=345.42 Aligned_cols=220 Identities=22% Similarity=0.269 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++|++|.+......+|.
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~--------~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD--------LIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC--------CEEEEeccCCCCCCCCCHH
Confidence 35999999999999999999999999999999999999998 999999863 1367888865444557888
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCC-hHHHHHH---HH-hhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD-IDVYMKA---IA-TEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+++..+.... .................+..+ +..+... .. ..+......++.+++.+||.. + .
T Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~-----~ 152 (635)
T PRK11147 85 DFVAEGIEEQ-----AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--D-----A 152 (635)
T ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--C-----C
Confidence 8765332100 000000000000000000000 0000000 00 001122345678899999962 3 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+| .++|+...+.++||+|++|+
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvl-ivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSII-FISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEE-EEeCCHHHHHHhcCeEEEEE
Confidence 45689999999999999999999999999999999999999999999875 24544 45678889999999999999
Q ss_pred CCeEE-EecCHHHH
Q 001957 400 DGQIV-YQGPRELV 412 (991)
Q Consensus 400 ~G~iv-~~G~~~~~ 412 (991)
+|+++ |.|+.++.
T Consensus 228 ~G~i~~~~g~~~~~ 241 (635)
T PRK11147 228 RGKLVSYPGNYDQY 241 (635)
T ss_pred CCEEEEecCCHHHH
Confidence 99997 55765543
No 209
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=318.01 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=163.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|++++ ....+|+|.++|+++... ..++.++|++|+..++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998753 111389999999987531 1245789999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.++....+.... . .....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------K------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999987543321100 0 00112345567777642111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|+.+++.+++|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~-sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIV-THNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-EeCHHHHHhhCCEEEEE
Confidence 4457899999999999999999999999999999999999999999999974 35565555 55677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 210
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=323.39 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=162.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++... ..++.++|++|+.
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999987 45 99999999987421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.+...+... + ....++.+++.+++....+..
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 7777 599999998764332100 0 001223456666664211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-+..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|+..++.++||++
T Consensus 148 -~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii-vtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 -LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVI-VTHNMQQAVRVSDMT 223 (269)
T ss_pred -hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhcCEE
Confidence 1345578999999999999999999999999999999999999999999999843 455555 556777999999999
Q ss_pred EEecC-----------CeEEEecCHHHHH
Q 001957 396 ILLSD-----------GQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~ 413 (991)
++|++ |++++.|+++++.
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHH
Confidence 99996 6799999998875
No 211
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.8e-35 Score=307.89 Aligned_cols=171 Identities=43% Similarity=0.694 Sum_probs=151.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998865334567999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999764210 0
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ .+.|+|++.|++..++.+++|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 5999999999999999999999999999999999999999999999865 467777776665557889999999999999
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
No 212
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=318.78 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=165.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999987532 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... + .....+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK-----H----------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 6 8999999987543221100 0 0011234567777875321111 23
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~-sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIV-THNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEE-eCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999753 4555555 55666889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988774
No 213
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-35 Score=320.48 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=166.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee-----CCCccc-------cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4999999999999999999999999999999999999998 9999999997 654321 246899999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-
Q 001957 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (991)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (991)
+. .+++.+|+.||+.+.....+... . . +....++++++.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~---~-----------------------------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y---G-----------------------------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H---H-----------------------------HHHHHHHHHHHHcCCChh
Confidence 86 35778899999976532111000 0 0 00113456788999963
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++ .+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++.+..+.|+|+ ++|...++.+
T Consensus 144 ~~~~-----~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-isH~~~~~~~ 217 (258)
T PRK11701 144 RIDD-----LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI-VTHDLAVARL 217 (258)
T ss_pred HHhC-----CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EeCCHHHHHH
Confidence 4443 446899999999999999999999999999999999999999999999986533555554 5667778889
Q ss_pred hcCeEEEecCCeEEEecCHHHHH
Q 001957 391 LFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
No 214
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.9e-35 Score=319.03 Aligned_cols=203 Identities=23% Similarity=0.262 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCeeeEEEECCeeCCCccc-cceEEEEecCCC--CC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~----~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~ 238 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++| + +|+|.++|+++..... ++.++||+|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 489999999999999999999999999999999999988 6 9999999998864322 257999999864 44
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc---ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---CADTM 315 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~ 315 (991)
+.+|+.+++.+.++..+... ....++++++.++|.+ ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-- 135 (254)
T PRK10418 94 PLHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLK-- 135 (254)
T ss_pred ccccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhh--
Confidence 66899999877543221100 0012456788999875 233
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..+..|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++ +|..+++.+++|++
T Consensus 136 ---~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~-sH~~~~~~~~~d~v 211 (254)
T PRK10418 136 ---LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV-THDMGVVARLADDV 211 (254)
T ss_pred ---cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCHHHHHHhCCEE
Confidence 34568999999999999999999999999999999999999999999999876445555555 55667888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988764
No 215
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-35 Score=315.47 Aligned_cols=200 Identities=29% Similarity=0.419 Sum_probs=159.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 45999999999999999999999999999999999999998 9999999987652 346799999987653 4489
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.......... ... ......++.+++.+||++..++. +.
T Consensus 87 v~e~l~~~~~~~~~~~~--~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKGLFR--RLS----------------------------KADKAKVDEALERVGLSELADRQ-----IG 131 (213)
T ss_pred HHHHHHhcccccccccc--CCC----------------------------HHHHHHHHHHHHHcCCHHHHhCC-----cc
Confidence 99999986432110000 000 00112346688899998766654 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVV-THDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCEEEEEcCc-
Confidence 8999999999999999999999999999999999999999999999875 45565555 56677888999999999876
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
No 216
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-35 Score=364.98 Aligned_cols=256 Identities=24% Similarity=0.371 Sum_probs=193.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++.+..++|+.++.+.+++.- . -+....+.....++|+|+++.+..
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~-----~-~~~~~~~~~~~~i~~~~vsf~y~~---------------------------- 467 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPR-----S-AGLAALPELRGAITFENIRFRYAP---------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-----C-CCCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 466677788877776655410 0 000111112357999999998731
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|+.|+||+.++|+|+||||||||+++|+|+++|+ +|+|++||+++++... ++.++||+|++
T Consensus 468 ----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 468 ----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred ----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 1134899999999999999999999999999999999999998 9999999999887653 46799999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. +++.|++|||.++.. ....+... ++....+ .++. +-.|+...||.
T Consensus 541 ~-lf~~ti~eNi~~~~~----~~~~~~i~---------------------~a~~~~~------l~~~--i~~lp~gl~t~ 586 (694)
T TIGR01846 541 V-LFSRSIRDNIALCNP----GAPFEHVI---------------------HAAKLAG------AHDF--ISELPQGYNTE 586 (694)
T ss_pred e-ehhhhHHHHHhcCCC----CCCHHHHH---------------------HHHHHcC------hHHH--HHhCcCccCcE
Confidence 5 556799999987521 11111111 1110000 1112 22467788999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+. ...||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. .+.|+|++.|++ +....||+|
T Consensus 587 i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i 661 (694)
T TIGR01846 587 VGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL--STVRACDRI 661 (694)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh--HHHHhCCEE
Confidence 9865 56899999999999999999999999999999999999999999999874 467777776654 455679999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++++
T Consensus 662 i~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 662 IVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEeCCEEEEeCCHHHHHH
Confidence 9999999999999998864
No 217
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-35 Score=358.53 Aligned_cols=207 Identities=26% Similarity=0.416 Sum_probs=167.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++ ++++.|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~-~lf~~T 421 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDV-VLFNDT 421 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCc-cccccc
Confidence 4999999999999999999999999999999999999998 9999999999876543 46799999976 566779
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++... ....+.+. ++.... -.++.+ -.|++..||.+|+. .+
T Consensus 422 i~~Ni~~~~~~---~~~~~~i~---------------------~~l~~~------~l~~~i--~~lp~gldt~i~~~-g~ 468 (571)
T TIGR02203 422 IANNIAYGRTE---QADRAEIE---------------------RALAAA------YAQDFV--DKLPLGLDTPIGEN-GV 468 (571)
T ss_pred HHHHHhcCCCC---CCCHHHHH---------------------HHHHHc------ChHHHH--HhCcCcccceecCC-CC
Confidence 99999986310 00011111 110000 011111 24667789999965 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+++.+|++++||||||+||..++..|++.|++.. .++|+|+.+|++ .....||+|++|++|+
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGR 544 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999864 457777777665 6678899999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
++..|+++++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999999885
No 218
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-35 Score=288.30 Aligned_cols=202 Identities=28% Similarity=0.375 Sum_probs=171.7
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEe
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYIS 232 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~ 232 (991)
......+||++|++.|++||.++|+|||||||||||-+|+|+..|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3446688999999999999999999999999999999999999999 9999999999865532 36899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|...++|+||..||+...+.++|-..+. ........|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~----------------------------------~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSAD----------------------------------SRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCcccc----------------------------------HHHHHHHHHHHhCccccc
Confidence 9999999999999999998877632210 011234578899998766
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+ .++.+|||||+|||+||||++..|+|||.||||-.||..|..+|.+.|-.+.+..+.|.|+. +|+ +.+...|
T Consensus 141 ~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlV-THD-~~LA~Rc 213 (228)
T COG4181 141 T-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV-THD-PQLAARC 213 (228)
T ss_pred c-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEE-eCC-HHHHHhh
Confidence 5 56789999999999999999999999999999999999999999999999887655555554 444 3677889
Q ss_pred CeEEEecCCeEEE
Q 001957 393 DDIILLSDGQIVY 405 (991)
Q Consensus 393 D~vilL~~G~iv~ 405 (991)
||++-|..|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999975
No 219
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=317.44 Aligned_cols=212 Identities=21% Similarity=0.312 Sum_probs=165.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|+.+ +....+|+|+++|+++.... .++.++|++|+..+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 359999999999999999999999999999999999976 21012899999999875321 24578999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++. ||+||+.+....++..... ......++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 9999999874332210000 000112456788899865322222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..++.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiii-sH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVV-THSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-eCCHHHHHhhcCEEEE
Confidence 23457899999999999999999999999999999999999999999999974 35565555 5566688899999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=318.63 Aligned_cols=207 Identities=18% Similarity=0.263 Sum_probs=162.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ |+ +|+|.++|+++... ..++.++|++|+.
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 45 89999999987532 1235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.....+.... . ..+..+...++.+++.......
T Consensus 112 ~~~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFP-KSIYNNITHALKYAGERRK-----S----------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCc-ccHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 7777 4999999986532211000 0 0011234456777774211111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-+..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|...++.+++|+|
T Consensus 158 -~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~-tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 -LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIV-THNMQQALRVSDRT 233 (268)
T ss_pred -HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEE-EeCHHHHHHhCCEE
Confidence 1245578999999999999999999999999999999999999999999999853 4555555 55667889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 221
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.2e-35 Score=322.75 Aligned_cols=207 Identities=21% Similarity=0.237 Sum_probs=168.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCC--CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+.. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999998753221 246899999864 567
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+||.|++.+..+....... ......++.+++.+||. +..++
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 145 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASY---- 145 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhc----
Confidence 88999999987543210000 00112346688999994 44554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++..+||++++|
T Consensus 146 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviiv-sH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 146 -YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQHLGMMKHISDQVLVM 223 (267)
T ss_pred -CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-eCCHHHHHHhcCEEEEE
Confidence 3468999999999999999999999999999999999999999999999876445565554 56677888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
No 222
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.9e-35 Score=355.91 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=166.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+ +..|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-FNRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccc-cccc
Confidence 3899999999999999999999999999999999999998 9999999999887643 4689999997654 5679
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. ....+...+ +.... -.+.. .-.|+...||.+|+. ..
T Consensus 425 i~~Ni~~~~~----~~~d~~i~~---------------------al~~~------~l~~~--i~~lp~gldt~i~~~-g~ 470 (588)
T PRK13657 425 IEDNIRVGRP----DATDEEMRA---------------------AAERA------QAHDF--IERKPDGYDTVVGER-GR 470 (588)
T ss_pred HHHHHhcCCC----CCCHHHHHH---------------------HHHHh------CHHHH--HHhCcccccchhcCC-CC
Confidence 9999988631 111111111 10000 01111 223677789999864 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+.+|++ +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999864 367777776665 5678899999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998863
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=320.06 Aligned_cols=211 Identities=25% Similarity=0.328 Sum_probs=166.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcc----ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|.++.+.. .++.++|++|+..++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 35999999999999999999999999999999999998751 012899999999875431 246789999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.......... .+....+..+++.++|.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999886532210000 000112345678888865432222 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiiv-sH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIV-THNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999754 3555554 56677899999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=317.48 Aligned_cols=212 Identities=23% Similarity=0.289 Sum_probs=167.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|++++++ ..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 48999999999999999999999999999999999998742 2479999999987421 1245699999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.+.....+.... . +....+..+++.++|.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------L------------------------EIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999886533211000 0 00112455778888754222111 3
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++ +|+..++.++||+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiiv-sH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIV-SHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE-ECCHHHHHHhcCEEEEE
Confidence 45678999999999999999999999999999999999999999999999865445666555 56677899999999999
Q ss_pred cC-----CeEEEecCHHHHH
Q 001957 399 SD-----GQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (991)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
No 225
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=315.97 Aligned_cols=207 Identities=23% Similarity=0.337 Sum_probs=163.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 59999999999999999999999999999999999987531 1379999999987531 1235689999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----ccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (991)
+.+||.||+.++....+...+ + + ....++..++.+++. +..+
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~-~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~- 143 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDR-D---H-----------------------------LMEVAERSLRGAALWDEVKDRLK- 143 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCH-H---H-----------------------------HHHHHHHHHHHcCcchhhhhhhc-
Confidence 999999999886543211000 0 0 001123345555543 2233
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++ +|...++.+++|+
T Consensus 144 ----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~-sH~~~~~~~~~d~ 216 (252)
T PRK14272 144 ----TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIV-THNMHQAARVSDT 216 (252)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEE-eCCHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999753 4555554 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
No 226
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-35 Score=316.90 Aligned_cols=210 Identities=23% Similarity=0.318 Sum_probs=163.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCC-c---cccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~-~---~~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.+++.. ..+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 359999999999999999999999999999999999987520 128999999998742 1 1245799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++....+...+ + .....+++.++.+++.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999987543211000 0 00112344566677643221111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++ +|...++.+++|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~-sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIV-THSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEE-ecCHHHHHHhCCEEEEE
Confidence 44568999999999999999999999999999999999999999999999854 4555555 45667899999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998775
No 227
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=319.00 Aligned_cols=207 Identities=23% Similarity=0.315 Sum_probs=164.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-----CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|++++ . +|+|.++|.++... ..++.++|++|+.
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~---~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI---EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCC---ceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 489999999999999999999999999999999999873 5 89999999987531 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++. ||+||+.+.....+...+ + .....++++++.++|.....+.
T Consensus 116 ~l~~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~ 161 (272)
T PRK14236 116 NPFPK-SIYENVVYGLRLQGINNR-----R----------------------------VLDEAVERSLRGAALWDEVKDR 161 (272)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH-----H----------------------------HHHHHHHHHHHHcCCChhHHHH
Confidence 87775 999999987543321100 0 0011234567777775321111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++ +|..+++.+++|+|
T Consensus 162 ~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiiv-tH~~~~~~~~~d~i 237 (272)
T PRK14236 162 L-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIV-THNMQQAARVSDYT 237 (272)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEE-eCCHHHHHhhCCEE
Confidence 1 245678999999999999999999999999999999999999999999999863 4555554 56677889999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 238 ~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 238 AFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEECCEEEecCCHHHHh
Confidence 999999999999988763
No 228
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-35 Score=356.04 Aligned_cols=207 Identities=25% Similarity=0.356 Sum_probs=167.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.++ ..|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 404 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF-SDT 404 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeec-ccc
Confidence 4899999999999999999999999999999999999998 9999999999876543 46799999987655 569
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++.. ....+...+ ..+..+ .+ -....|++..||.+|+. ..
T Consensus 405 i~~Ni~~~~~----~~~~~~~~~---~~~~~~------------------------l~--~~i~~lp~gl~t~~~~~-g~ 450 (569)
T PRK10789 405 VANNIALGRP----DATQQEIEH---VARLAS------------------------VH--DDILRLPQGYDTEVGER-GV 450 (569)
T ss_pred HHHHHhcCCC----CCCHHHHHH---HHHHcC------------------------CH--HHHHhCcCcccceecCC-CC
Confidence 9999988531 111111110 000000 00 02345778889999864 56
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++ +....+|+|++|++|+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHGH 526 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999864 467888777765 4567799999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++.+|+++++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999998863
No 229
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.9e-35 Score=311.06 Aligned_cols=196 Identities=28% Similarity=0.389 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 46999999999999999999999999999999999999998 999999999875432 235799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+|+.||+.++........ . .+....++++++.+||.+..+..
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 138 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYY--- 138 (220)
T ss_pred CCCCHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcC---
Confidence 88999999998754321000 0 00112346688999998766644
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ . +.+++|+|++|
T Consensus 139 --~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l 214 (220)
T TIGR02982 139 --PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHM 214 (220)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEE
Confidence 4689999999999999999999999999999999999999999999998754467777776654 3 56899999999
Q ss_pred cCCeE
Q 001957 399 SDGQI 403 (991)
Q Consensus 399 ~~G~i 403 (991)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=313.96 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=161.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+.+ |....+|+|.++|.++... ..++.++|++|+..++
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF 98 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccC
Confidence 59999999999999999999999999999999999865 3111289999999987421 1235799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.+.....+.... + . ....+.+.++.+++........ +
T Consensus 99 ~-~tv~~nl~~~~~~~~~~~~-~---~-----------------------------~~~~~~~~l~~~~l~~~i~~~~-~ 143 (252)
T PRK14255 99 P-FSIYENVIYGLRLAGVKDK-A---V-----------------------------LDEAVETSLKQAAIWDEVKDHL-H 143 (252)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-H---H-----------------------------HHHHHHHHHHHcCCccchhhHH-h
Confidence 7 7999999987543321100 0 0 0011233455666532111111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~-vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIIL-VTHSMHQASRISDKTAFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEE-EECCHHHHHHhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999854 455555 556677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|++.++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-35 Score=320.02 Aligned_cols=213 Identities=28% Similarity=0.354 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCeeCCCccc---cceEEEEecCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-----~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~ 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 35999999999999999999999999999999999999874 1137999999998764322 346899999877
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
.++.+||+||+.++......... .. . .+....++.+++.+||++..++
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~--~~---~-------------------------~~~~~~~~~~l~~~~l~~~~~~-- 141 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAG--AL---T-------------------------HRDGEIAWQALALAGATALVGR-- 141 (272)
T ss_pred CCCCCcHHHHHhhcccccccccc--cC---C-------------------------HHHHHHHHHHHHHcCcHhhhcC--
Confidence 67789999999886321100000 00 0 0011234568889999766554
Q ss_pred cCcccCCCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
.+..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|..++
T Consensus 142 ---~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviii-sH~~~~ 217 (272)
T PRK13547 142 ---DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAI-VHDPNL 217 (272)
T ss_pred ---CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ECCHHH
Confidence 45689999999999999999 59999999999999999999999999999865335565555 556678
Q ss_pred hHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 388 ~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
+.+++|++++|++|++++.|+++++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88999999999999999999988763
No 232
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=314.44 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.++... ..++.++|++|+..++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 49999999999999999999999999999999999998741 1259999999987532 1246799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+. ||+||+.++....+.... + .....+++.++.++|.+..... .+
T Consensus 98 ~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~-~~ 142 (251)
T PRK14249 98 PK-SIFDNVAFGPRMLGTTAQ-----S----------------------------RLDEVVEKSLRQAALWDEVKDN-LH 142 (251)
T ss_pred cC-cHHHHHhhHHHhcCCChh-----h----------------------------HHHHHHHHHHHHhCCchhhhhH-hh
Confidence 74 999999987643321100 0 0001234456666664321111 23
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|...++.+++|++++|
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiliv-sh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIV-THNMQQAARASDWTGFL 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEE-eCCHHHHHhhCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999873 35555555 56677889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 220 LTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988764
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-35 Score=304.37 Aligned_cols=170 Identities=38% Similarity=0.634 Sum_probs=148.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+. ++ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 459999999999999999999999999999999999863 66 999999999875 223467999999988899999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.++..+ +
T Consensus 96 v~~~l~~~~~~--------------------------------------------------~------------------ 107 (192)
T cd03232 96 VREALRFSALL--------------------------------------------------R------------------ 107 (192)
T ss_pred HHHHHHHHHHH--------------------------------------------------h------------------
Confidence 99999874210 0
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++..++.+.+|++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 5999999999999999999999999999999999999999999999865 4667777666544357889999999999 9
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
No 234
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=315.35 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=163.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999987431 1245799999988777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.++....+.... + .....++++++.++|....... -+
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDN-LD 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH-hc
Confidence 5 8999999886543221100 0 0011234567778884221001 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+ ++|...++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii-isH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIM-VTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEE-EECCHHHHHhhcCEEEEE
Confidence 44578999999999999999999999999999999999999999999999743 455555 456667889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 235
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=315.14 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=163.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++|++++|+||||||||||+++|+|+.++. ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 5999999999999999999999999999999999987531 11289999999987543 1235689999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.|..+..+.... . .....++++++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK---------K------------------------TLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH---------H------------------------HHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 5999999987654321000 0 00112344567777643211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ +.|+|++ +|..+++.+++|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~-sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIV-THNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEE-EcCHHHHHhhCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999854 4555555 55667888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988763
No 236
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=316.31 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=163.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCeeCCCc-----cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK--VSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~--~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|+|++|++||+++|+|+|||||||||++|+|+++++.. .+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 499999999999999999999999999999999999875211 389999999987431 1235799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ +||+||+.++....+...+ .+....++++++.+|+....... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 7 8999999887543211000 00011234567777774211111 13
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.+++|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAI-VTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHHhcCeEEEE
Confidence 45678999999999999999999999999999999999999999999999753 455555 456778999999999999
Q ss_pred c-----CCeEEEecCHHHHH
Q 001957 399 S-----DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~-----~G~iv~~G~~~~~~ 413 (991)
+ +|+++++|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 8 59999999999874
No 237
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.7e-35 Score=347.83 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=169.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 5999999999999999999999999999999999999998 9999999998865432 24689999999899999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|..... .+ ....++++++.+||++..|..+
T Consensus 102 tv~e~l~~~~~~~---------~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~----- 138 (510)
T PRK15439 102 SVKENILFGLPKR---------QA-----------------------------SMQKMKQLLAALGCQLDLDSSA----- 138 (510)
T ss_pred cHHHHhhcccccc---------hH-----------------------------HHHHHHHHHHHcCCCccccCCh-----
Confidence 9999998853210 00 0112456789999987776554
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+.+++.++||+|++|++|
T Consensus 139 ~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii-vtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVF-ISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999865 4555555 567778899999999999999
Q ss_pred eEEEecCHHHH
Q 001957 402 QIVYQGPRELV 412 (991)
Q Consensus 402 ~iv~~G~~~~~ 412 (991)
++++.|+.+++
T Consensus 217 ~i~~~g~~~~~ 227 (510)
T PRK15439 217 TIALSGKTADL 227 (510)
T ss_pred EEEEecChHHc
Confidence 99999988764
No 238
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-35 Score=309.55 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=159.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCCCCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (991)
|||+++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999999874211 2357999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+...... . .. ....++++++.+||++..+. .+.
T Consensus 92 ~~~~l~~~~~~~~---~--------~~-------------------------~~~~~~~~l~~~~l~~~~~~-----~~~ 130 (214)
T cd03297 92 VRENLAFGLKRKR---N--------RE-------------------------DRISVDELLDLLGLDHLLNR-----YPA 130 (214)
T ss_pred HHHHHHHHHhhCC---H--------HH-------------------------HHHHHHHHHHHcCCHhHhhc-----Ccc
Confidence 9999988643210 0 00 01124567889999766654 446
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|..+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV-THDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE-ecCHHHHHHhcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999876435555554 566778889999999999999
Q ss_pred EEEec
Q 001957 403 IVYQG 407 (991)
Q Consensus 403 iv~~G 407 (991)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
No 239
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.5e-35 Score=353.77 Aligned_cols=207 Identities=26% Similarity=0.385 Sum_probs=165.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|+..++ ..|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccC-ccc
Confidence 4899999999999999999999999999999999999998 9999999999876542 46899999987655 589
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++||+.++.. ....+...+. .+.++ .++. ...++...||.+|+. ..
T Consensus 425 i~~Ni~~~~~----~~~~~~~~~a---~~~~~------------------------~~~~--i~~l~~g~~t~~~~~-~~ 470 (585)
T TIGR01192 425 IRENIRLGRE----GATDEEVYEA---AKAAA------------------------AHDF--ILKRSNGYDTLVGER-GN 470 (585)
T ss_pred HHHHHhcCCC----CCCHHHHHHH---HHHhC------------------------cHHH--HHhccccccchhcCC-CC
Confidence 9999988631 1111111110 00000 0111 224566778888854 66
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++. .++|+|++.|++ +....||+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~--~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL--STVRNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh--HHHHcCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999863 467777776654 3446799999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=337.17 Aligned_cols=210 Identities=29% Similarity=0.372 Sum_probs=178.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC--CCc---cccceEEEEecCC--
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEF---VPQRTAAYISQHD-- 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~--~~~---~~~~~~~yv~Q~d-- 235 (991)
+...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+. +.- ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4567999999999999999999999999999999999999998 99999999872 111 1235678888874
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+.|.+||+++|......++.... .+....++++|+..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHH----
Confidence 678999999999988765533210 1122357788999999842
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..++++++||||||||++|||||+.+|++|++|||||.||++.+.+|++.|+++.++. +.+.+.|+|+..-+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 4468899999999999999999999999999999999999999999999999997754 455666788999999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+||+.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998884
No 241
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=319.26 Aligned_cols=203 Identities=22% Similarity=0.357 Sum_probs=162.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+.+ |+ +|+|.+||.++... ..++.++|++|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 49999999999999999999999999999999999854 36 99999999987532 1245799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc----cc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VC 311 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (991)
.+++ .||+||+.|.....+.... . .....+.++++.+||. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~--------~-------------------------~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK--------K-------------------------QLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH--------H-------------------------HHHHHHHHHHHHhCCccchhhH
Confidence 7776 4999999987543221100 0 0011234566777763 22
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.+ ..+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIi-vsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMI-VTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEE-EeCCHHHHHHh
Confidence 23 44578999999999999999999999999999999999999999999999753 445554 55667788899
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|++++|++|++++.|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.4e-35 Score=315.39 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=159.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35999999999999999999999999999999999999998 999999999875432 235699999987665 57
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.+.... . ..+ .+...... ...+.+++.+ +++...+ .
T Consensus 91 tv~~nl~~~~~~--~--~~~---~~~~~~~~------------------------~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADPG--M--SME---RVIEAAKL------------------------AGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCCC--C--CHH---HHHHHHHH------------------------cCcHHHHHhCcccccchhh-----c
Confidence 999999875321 0 000 00000000 0012234444 4433333 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ .+.|+|++.|+ .+++ ..||++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~-~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHR-LSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCC-HHHH-HhCCEEEEEE
Confidence 457899999999999999999999999999999999999999999999985 36676666554 4566 4699999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
No 243
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-35 Score=348.40 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=169.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++| + +|+|.++|+++..... ++.++||+|+..+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 599999999999999999999999999999999999986 6 9999999998865332 356999999988899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+......+.. .. .+....++++++.+||++..|..+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 141 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-------DY------------------------DAMYLRAQKLLAQLKLDINPATPV--- 141 (506)
T ss_pred CCcHHHHhhhcccccccCCc-------CH------------------------HHHHHHHHHHHHHcCCCCCcccch---
Confidence 99999999987542210000 00 001123566889999987776544
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+..++.++||+|++|+
T Consensus 142 --~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~-~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 142 --GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIY-ISHKLNEVKAISDTICVIR 217 (506)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCcHHHHHHhcCEEEEEE
Confidence 58999999999999999999999999999999999999999999999865 4555555 5667788999999999999
Q ss_pred CCeEEEecCHHH
Q 001957 400 DGQIVYQGPREL 411 (991)
Q Consensus 400 ~G~iv~~G~~~~ 411 (991)
+|++++.|++++
T Consensus 218 ~G~i~~~~~~~~ 229 (506)
T PRK13549 218 DGRHIGTRPAAG 229 (506)
T ss_pred CCEEeeeccccc
Confidence 999999987554
No 244
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=302.54 Aligned_cols=210 Identities=23% Similarity=0.364 Sum_probs=185.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+++++|+||.++||+|++++|||||||||.+++|.|++.|+ +|+|++||.+++... +..+||.|.+.-+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 4567999999999999999999999999999999999999999 999999999987543 467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.|.|.|-++++|.... +.....+++|+.+++...... .+.
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~-----kIk 129 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTK-----KIK 129 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccc-----hHH
Confidence 99999999999886421 112345778999999876654 457
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+||-|.+|++.+-.+++++|++++||||+|||||.++..+-+.+.++.. .|.|+|.+ +|-++.+.++||++++|++|+
T Consensus 130 ~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifS-sH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFS-SHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEe-cchHHHHHHHhhhhheecCCc
Confidence 8999999999999999999999999999999999999999999999864 56666655 678999999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
.|.+|+.+++..-|.
T Consensus 208 ~V~~G~v~~ir~~~G 222 (300)
T COG4152 208 TVLYGTVEDIRRSFG 222 (300)
T ss_pred eEEeccHHHHHHhcC
Confidence 999999999987654
No 245
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-34 Score=314.28 Aligned_cols=206 Identities=24% Similarity=0.348 Sum_probs=164.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee-----CCCccc-------cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 4899999999999999999999999999999999999998 9999999986 543221 245899999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-
Q 001957 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (991)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (991)
++. +.+.+|+.||+.+......... . . .....++++++.+||.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~------~--------------------------~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGARH-Y------G--------------------------NIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcccc-h------H--------------------------HHHHHHHHHHHHcCCChh
Confidence 864 4566899999976432110000 0 0 00123456889999963
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++ .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|+.+++.+
T Consensus 141 ~~~~-----~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~v-sH~~~~~~~ 214 (253)
T TIGR02323 141 RIDD-----LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-THDLGVARL 214 (253)
T ss_pred hhhc-----CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHH
Confidence 4444 4568999999999999999999999999999999999999999999999765445566655 566778889
Q ss_pred hcCeEEEecCCeEEEecCHHHHH
Q 001957 391 LFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
No 246
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.5e-35 Score=311.71 Aligned_cols=195 Identities=29% Similarity=0.413 Sum_probs=153.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|+..+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 35999999999999999999999999999999999999988 9999999998754322 357899999887766 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc-----
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV----- 316 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v----- 316 (991)
||.||+.+..... .. ..+.++++.++|.+..+..+
T Consensus 93 tv~e~l~~~~~~~----~~------------------------------------~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA----DD------------------------------------ERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC----CH------------------------------------HHHHHHHHHcCcHHHHHhccccccc
Confidence 9999998753110 00 01122344555544333321
Q ss_pred -cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 317 -GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 317 -g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
-......|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ ...+ +++|++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHR-PSLL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCC-HHHH-HhCCEE
Confidence 0123568999999999999999999999999999999999999999999999754 3566666554 4455 799999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998765
No 247
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.9e-35 Score=325.06 Aligned_cols=256 Identities=27% Similarity=0.402 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCC
Q 001957 81 RQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160 (991)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (991)
++..-+|+-+.+.+.++ +.+++.++-|+..+..|++++-.
T Consensus 305 Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-------------------------------- 344 (580)
T COG4618 305 ARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-------------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC--------------------------------
Confidence 33444555544444333 34457788899999999998721
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCC
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNH 237 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~ 237 (991)
...++.+|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||-+++..++. +.+||.||+ .-
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQd-Ve 420 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQD-VE 420 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCccc-ce
Confidence 112356999999999999999999999999999999999999998 99999999999876543 789999995 55
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++..||.|||. |+. ++.|.+...++....+ +++ =++.|++.+||.||
T Consensus 421 LF~GTIaeNIa---Rf~----------------------~~~d~~kIieAA~lAg------vHe--lIl~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIA---RFG----------------------EEADPEKVIEAARLAG------VHE--LILRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHH---hcc----------------------ccCCHHHHHHHHHHcC------hHH--HHHhCcCCccCccC
Confidence 66789999995 221 1223333333322211 111 26789999999999
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+. ..+||||||||+++||||-++|.+++||||-|.||..-...+.+.|.+..+ .|+|+|+..| ++.+...+|+|++
T Consensus 468 ~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaH--RPs~L~~~Dkilv 543 (580)
T COG4618 468 EG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAH--RPSALASVDKILV 543 (580)
T ss_pred CC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEec--CHHHHhhcceeee
Confidence 65 567999999999999999999999999999999999999999999998644 6677666654 5689999999999
Q ss_pred ecCCeEEEecCHHHHHHHHH
Q 001957 398 LSDGQIVYQGPRELVLEFFA 417 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~ 417 (991)
|++|++-.+|+++|++....
T Consensus 544 l~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 544 LQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCChHHhcCCHHHHHHHhc
Confidence 99999999999999997654
No 248
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=317.05 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=166.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|.. ..+|+|+++|+++... ..++.++|++|+..+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 469999999999999999999999999999999999997610 1289999999987531 124568999998776
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
+ .+||+||+.++....+.. .+ ....++++++.++|.+..+...
T Consensus 101 ~-~~tv~enl~~~~~~~~~~------~~-----------------------------~~~~~~~~l~~~~l~~~i~~~~- 143 (261)
T PRK14263 101 F-SMSIFDNVAFGLRLNRYK------GD-----------------------------LGDRVKHALQGAALWDEVKDKL- 143 (261)
T ss_pred c-cccHHHHHHHHHhhcCch------HH-----------------------------HHHHHHHHHHHcCCchhhhhhh-
Confidence 6 699999999876432110 00 0112455678888854332222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|+ ++|...++.+++|+|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~-isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIAL-VTHNMQQAIRVADTTAF 220 (261)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEE-EeCCHHHHHHhCCEEEE
Confidence 24567899999999999999999999999999999999999999999999984 3455544 56677789999999999
Q ss_pred ec--------CCeEEEecCHHHHH
Q 001957 398 LS--------DGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~--------~G~iv~~G~~~~~~ 413 (991)
|+ +|++++.|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 96 89999999988764
No 249
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=316.79 Aligned_cols=207 Identities=16% Similarity=0.296 Sum_probs=160.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|+|||||||||++|+|.++ |+ +|+|.+||+++... ..++.++|++|+.
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT---TGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC---ceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 48999999999999999999999999999999999986 45 99999999987421 1245799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.+..+.... . . ....+...++.+++.......
T Consensus 115 ~~~~-~tv~eni~~~~~~~~~~~~-----~---~-------------------------~~~~~~~~l~~~~~~~~l~~~ 160 (271)
T PRK14238 115 NPFP-KSIYDNVTYGPKIHGIKDK-----K---T-------------------------LDEIVEKSLRGAAIWDELKDR 160 (271)
T ss_pred cccc-ccHHHHHHHHHHhcCCCcH-----H---H-------------------------HHHHHHHHHHHcCCcchHHHH
Confidence 7776 5999999987543211000 0 0 001123345555432111111
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+ ++|..+++.+++|++
T Consensus 161 ~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii-vsH~~~~i~~~~d~i 236 (271)
T PRK14238 161 L-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIII-VTHNMQQAARISDKT 236 (271)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEE-EEcCHHHHHHhCCEE
Confidence 1 245678999999999999999999999999999999999999999999999753 455554 556677888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 237 ~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 237 AFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
No 250
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-34 Score=377.01 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=181.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+||++|++.+++.+|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LT 2028 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCC
Confidence 46999999999999999999999999999999999999998 99999999998532 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+|+|.+.++.++.... +.+..++++|+.+||.+.+|..+ +
T Consensus 2029 v~E~L~l~a~l~g~~~~----------------------------------~~~~~v~~lLe~lgL~~~~dk~~-----~ 2069 (2272)
T TIGR01257 2029 GREHLYLYARLRGVPAE----------------------------------EIEKVANWSIQSLGLSLYADRLA-----G 2069 (2272)
T ss_pred HHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHhcCCh-----h
Confidence 99999998776543210 01123567899999988887665 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+++|++|||||||+|||+.++..+++.|+++.+ .++|+|+ ++|..+++..+||+|++|.+|+
T Consensus 2070 ~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIIL-tTH~mee~e~lcDrV~IL~~G~ 2147 (2272)
T TIGR01257 2070 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVL-TSHSMEECEALCTRLAIMVKGA 2147 (2272)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999999865 4555555 5677889999999999999999
Q ss_pred EEEecCHHHHHHHHH
Q 001957 403 IVYQGPRELVLEFFA 417 (991)
Q Consensus 403 iv~~G~~~~~~~~f~ 417 (991)
+++.|+++++...|.
T Consensus 2148 i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2148 FQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEECCHHHHHHHhC
Confidence 999999999988775
No 251
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=317.21 Aligned_cols=231 Identities=21% Similarity=0.245 Sum_probs=175.0
Q ss_pred hcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCC
Q 001957 109 RVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188 (991)
Q Consensus 109 ~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsG 188 (991)
...+.++..-+.++|+++.+. .+.+|+|+|+.|++||+++|+||||
T Consensus 11 ~~~~~~~~~~l~~~nl~~~~~----------------------------------~~~~l~~vs~~i~~Ge~~~IiG~nG 56 (274)
T PRK14265 11 SATINPDHSVFEVEGVKVFYG----------------------------------GFLALVDVHLKIPAKKIIAFIGPSG 56 (274)
T ss_pred ccccCCCCceEEEeeEEEEeC----------------------------------CeEEEeeeeeEEcCCCEEEEECCCC
Confidence 344555566788899987641 1259999999999999999999999
Q ss_pred CcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCCc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhh
Q 001957 189 SGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE 261 (991)
Q Consensus 189 sGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 261 (991)
|||||||++|+|++++.. ..+|+|.++|+++... ..++.++|++|+..+++ .||.||+.++....+...
T Consensus 57 sGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~--- 132 (274)
T PRK14265 57 CGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG--- 132 (274)
T ss_pred CCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH---
Confidence 999999999999986310 1289999999987431 12467999999887776 499999988654321100
Q ss_pred hhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC
Q 001957 262 MLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341 (991)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~ 341 (991)
. ....++..++.++|....... -+..+..|||||||||+||++|+.+
T Consensus 133 ---~-----------------------------~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 133 ---N-----------------------------LDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred ---H-----------------------------HHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhhC
Confidence 0 001123345566653211111 1244578999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec---------CCeEEEecCHHHH
Q 001957 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS---------DGQIVYQGPRELV 412 (991)
Q Consensus 342 p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~---------~G~iv~~G~~~~~ 412 (991)
|++|||||||+|||..++..+.+.|+++.+ +.|+ +.++|+.+++.+++|++++|+ +|++++.|+++++
T Consensus 180 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~ti-ii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 180 PDVLLMDEPCSALDPISTRQVEELCLELKE--QYTI-IMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEE-EEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 999999999999999999999999999853 4454 445667789999999999997 8999999999887
Q ss_pred H
Q 001957 413 L 413 (991)
Q Consensus 413 ~ 413 (991)
.
T Consensus 257 ~ 257 (274)
T PRK14265 257 F 257 (274)
T ss_pred H
Confidence 4
No 252
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.7e-34 Score=317.01 Aligned_cols=206 Identities=24% Similarity=0.305 Sum_probs=168.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (991)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+. .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999999998 9999999998764322 35799999986 3
Q ss_pred CCCCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (991)
+++..|+.|++.+..... ... . ......++++++.+||. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSLD----------K------------------------AERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhC
Confidence 567899999997754210 000 0 00112356678899996 34444
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++ +|...++.+++|+
T Consensus 148 -----~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiiv-sH~~~~i~~~~d~ 221 (268)
T PRK10419 148 -----RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI-THDLRLVERFCQR 221 (268)
T ss_pred -----CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEE-ECCHHHHHHhCCE
Confidence 4568999999999999999999999999999999999999999999999865435555555 5667788899999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
+++|.+|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
No 253
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.8e-35 Score=314.38 Aligned_cols=206 Identities=25% Similarity=0.375 Sum_probs=158.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 35999999999999999999999999999999999999998 9999999998754322 356999999876665 7
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.+...... . .++....+. ......++.+ ++....+ .
T Consensus 92 tv~e~l~~~~~~~~----~---~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~-----~ 135 (238)
T cd03249 92 TIAENIRYGKPDAT----D---EEVEEAAKK------------------------ANIHDFIMSLPDGYDTLVG-----E 135 (238)
T ss_pred hHHHHhhccCCCCC----H---HHHHHHHHH------------------------cChHHHHHhhccccceeec-----c
Confidence 99999988532110 0 000000000 0011222232 3333322 3
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.| +.+++. .||++++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh-~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAH-RLSTIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeC-CHHHHh-hCCEEEEEE
Confidence 457899999999999999999999999999999999999999999999874 4666666655 555665 899999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999887654
No 254
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=314.95 Aligned_cols=208 Identities=21% Similarity=0.291 Sum_probs=160.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCC--c---cccceEEEEecCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~~~ 238 (991)
.+|+|||++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++.. . ..++.++|++|+..++
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 4899999999999999999999999999999999997520 0128999999998742 1 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ .||+||+.+.....+.. . +. ...++.+++.+++.+..+.. -+
T Consensus 104 ~-~tv~enl~~~~~~~~~~--~----~~-----------------------------~~~~~~~l~~~~l~~~l~~~-~~ 146 (264)
T PRK14243 104 P-KSIYDNIAYGARINGYK--G----DM-----------------------------DELVERSLRQAALWDEVKDK-LK 146 (264)
T ss_pred c-ccHHHHHHhhhhhcCcc--h----HH-----------------------------HHHHHHHHHHhCchhhHHHH-hc
Confidence 7 59999999875432110 0 00 01123345555553211111 12
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+ ++|+.+++.++||+|++|
T Consensus 147 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~-vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIII-VTHNMQQAARVSDMTAFF 223 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEE-EecCHHHHHHhCCEEEEE
Confidence 44568999999999999999999999999999999999999999999999854 455555 556778999999999999
Q ss_pred c---------CCeEEEecCHHHHH
Q 001957 399 S---------DGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~---------~G~iv~~G~~~~~~ 413 (991)
+ +|++++.|+++++.
T Consensus 224 ~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 224 NVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ecccccccccCceEEEeCCHHHHH
Confidence 8 89999999998874
No 255
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=316.33 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=162.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++... ..++.++|++|+.
T Consensus 53 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 53 QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV---EGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC---ceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 49999999999999999999999999999999999986 45 89999999987431 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++. ||+||+.+.....+... . ....++++++.+||.+.....
T Consensus 130 ~l~~~-tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~i~~~ 173 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQGYDG------D-----------------------------IDERVEESLRRAALWDEVKDQ 173 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcCCcH------H-----------------------------HHHHHHHHHHHcCCCchhHHH
Confidence 77775 99999998764332100 0 011245677888875311001
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++ +.|+|+ ++|...++.+++|++
T Consensus 174 ~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii-~tH~~~~i~~~~dri 249 (285)
T PRK14254 174 L-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVI-VTHNMQQAARISDKT 249 (285)
T ss_pred H-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEE-EeCCHHHHHhhcCEE
Confidence 1 244578999999999999999999999999999999999999999999999864 355555 456677889999997
Q ss_pred E-EecCCeEEEecCHHHHH
Q 001957 396 I-LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 i-lL~~G~iv~~G~~~~~~ 413 (991)
+ +|++|+++..|+.+++.
T Consensus 250 ~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 250 AVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEEeeCCEEEEeCCHHHHH
Confidence 5 67999999999987763
No 256
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.6e-34 Score=304.87 Aligned_cols=189 Identities=24% Similarity=0.316 Sum_probs=155.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 45999999999999999999999999999999999999998 999999999854221 23579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.+.....+... . .....++++++.+||++..|+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 131 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSK----------K------------------------EKREKKKEALEKVGLNLKLKQK-- 131 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCchhhhcCC--
Confidence 889999999999754322100 0 0112345688899998776654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++ .. .+++|++++
T Consensus 132 ---~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~ 205 (206)
T TIGR03608 132 ---IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIE 205 (206)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEe
Confidence 457999999999999999999999999999999999999999999999865 466777766554 44 478999987
Q ss_pred e
Q 001957 398 L 398 (991)
Q Consensus 398 L 398 (991)
|
T Consensus 206 l 206 (206)
T TIGR03608 206 L 206 (206)
T ss_pred C
Confidence 6
No 257
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.2e-34 Score=351.94 Aligned_cols=207 Identities=25% Similarity=0.398 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|++++|||.++|+||||||||||+++|+|+++|. +|+|.+||.++++... ++.++|++|++ ++++.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~-~lf~~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDP-VLFAA 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCC-ccccc
Confidence 35999999999999999999999999999999999999998 9999999999876543 36799999965 56678
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
|++|||.++.. ....+...+ ..+..+ ..+.++ .+++..||.+|+. .
T Consensus 429 Ti~~Ni~~~~~----~~~~~~~~~---~l~~~~------------------------l~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGRP----DATDEEVEA---AARAAH------------------------AHEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCCC----CCCHHHHHH---HHHHcC------------------------cHHHHH--hCCCCCCceeCCC-C
Confidence 99999988531 001111100 000000 011222 3556678999864 5
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..||||||||+++||+++.+|++|+||||||+||..++..+++.|+++. .++|+|+..|++ +....+|+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 366777776654 556789999999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999998875
No 258
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=308.06 Aligned_cols=197 Identities=26% Similarity=0.383 Sum_probs=171.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc------c-ccceEEEEecCCCCCCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V-PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~------~-~~~~~~yv~Q~d~~~~~l 241 (991)
=++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+. . .+|.+|||+|+-.+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3577888776799999999999999999999999999 99999999876321 1 258899999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+-||.|+...- .....|++...||+.|..+ +++
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P 126 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYP 126 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCC
Confidence 9999999986421 0012466888999999886 667
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+..|++|+||||.+.||-....+++-.|.++.++. ..-|+.++|...|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCC
Confidence 8999999999999999999999999999999999999999999999998754 456667788899999999999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++...|+.+++.+
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999998863
No 259
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-34 Score=308.57 Aligned_cols=198 Identities=25% Similarity=0.369 Sum_probs=159.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++ .|
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 96 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DT 96 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-cc
Confidence 5999999999999999999999999999999999999998 9999999998765432 357899999877776 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+||+.+.....+.. . ....++.+++.+||. ...++ .+
T Consensus 97 v~enl~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 135 (225)
T PRK10247 97 VYDNLIFPWQIRNQQ--P----------------------------------DPAIFLDDLERFALPDTILTK-----NI 135 (225)
T ss_pred HHHHHHhHHhhcCCC--h----------------------------------HHHHHHHHHHHcCCChHHhcC-----Cc
Confidence 999998864332110 0 001235678899995 34444 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-C
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~-~ 400 (991)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+..+.|+|++. |+.+++ ..+|++++|. +
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-h~~~~~-~~~d~i~~l~~~ 213 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVT-HDKDEI-NHADKVITLQPH 213 (225)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CChHHH-HhCCEEEEEecc
Confidence 689999999999999999999999999999999999999999999998764466666655 455566 4699999994 6
Q ss_pred CeEEEecCHH
Q 001957 401 GQIVYQGPRE 410 (991)
Q Consensus 401 G~iv~~G~~~ 410 (991)
+..+.+|.++
T Consensus 214 ~~~~~~~~~~ 223 (225)
T PRK10247 214 AGEMQEARYE 223 (225)
T ss_pred cchHhhhhhc
Confidence 7777777654
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-34 Score=317.23 Aligned_cols=198 Identities=24% Similarity=0.242 Sum_probs=158.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|||+.|++||+++|+|||||||||||++|+|+++ . +|+|.+||.++.... .++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999997 5 899999999886543 2467999999988776 59
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-------cccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-------VCADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 315 (991)
|+||+..... . ..+ + +.+.++.+||. ...|+.
T Consensus 93 v~~nl~~~~~----~-~~~---~---------------------------------~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK----W-SDE---E---------------------------------IWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC----C-CHH---H---------------------------------HHHHHHHcCCHHHHHhCcccccce
Confidence 9999964211 0 000 0 11223334443 445666
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+++ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++.. .++|+|++ +|..+.+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~i-sH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILS-EHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEE-ECCHHHHH-hCCEE
Confidence 654 456799999999999999999999999999999999999999999999863 35565555 55555555 59999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
No 261
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=351.09 Aligned_cols=207 Identities=24% Similarity=0.283 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------ccceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 236 (991)
+.+|+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|+. .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 46999999999999999999999999999999999999998 999999999876432 235799999986 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
+++.+||.|++.+.....+...+ . +....++++|+.+||+ ...+.
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~L~~~gL~~~~~~~- 459 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPG---------K------------------------AAAARVAWLLERVGLLPEHAWR- 459 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCH---------H------------------------HHHHHHHHHHHHcCCCHHHhhC-
Confidence 78899999999987543321000 0 0112356789999996 44554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+++|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++.+..+.| |+.++|+...+.++||+|
T Consensus 460 ----~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-vi~isHdl~~v~~~~dri 534 (623)
T PRK10261 460 ----YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA-YLFISHDMAVVERISHRV 534 (623)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEE
Confidence 456899999999999999999999999999999999999999999999987644555 445567888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998874
No 262
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=310.84 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=157.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.+||.++.... .++.++|++|+..+++. |
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 4899999999999999999999999999999999999998 999999999875432 23568999998876664 9
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.+..... ..+ ++..... ....+..++.+ |+....+ ..
T Consensus 93 v~~~~~~~~~~~----~~~---~~~~~~~------------------------~~~l~~~~~~~~~~~~~~~~-----~~ 136 (229)
T cd03254 93 IMENIRLGRPNA----TDE---EVIEAAK------------------------EAGAHDFIMKLPNGYDTVLG-----EN 136 (229)
T ss_pred HHHHHhccCCCC----CHH---HHHHHHH------------------------HhChHHHHHhCcccccCHhh-----cC
Confidence 999998753210 000 0000000 00012233333 3332222 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|+++|++ .++ ..+|++++|++
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~-~~~d~i~~l~~ 212 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRL-STI-KNADKILVLDD 212 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HHH-hhCCEEEEEeC
Confidence 67899999999999999999999999999999999999999999999974 366777766554 555 45999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+.+++.+
T Consensus 213 g~~~~~~~~~~~~~ 226 (229)
T cd03254 213 GKIIEEGTHDELLA 226 (229)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999877643
No 263
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-34 Score=312.66 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=165.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (991)
+|+|||+++++|++++|+||||||||||+++|+|+++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 4 8999999998865432 2468999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+..... ... . +....++++++.+||.+..++. ++.
T Consensus 87 ~~nl~~~~~~~-~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-TRT----------E------------------------AVASALNEVAEALGLDDKLGRS-----VNQ 126 (248)
T ss_pred HHHHHhcCccC-CCc----------H------------------------HHHHHHHHHHHHcCCHhHhcCC-----ccc
Confidence 99998863211 000 0 0012346688899998766654 468
Q ss_pred CChhHhHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 324 ISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~-------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~-sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMS-SHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999864 45555554 566778999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987663
No 264
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-34 Score=308.87 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=160.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 5899999999999999999999999999999999999998 999999999875432 2356899999877665 79
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.+..... ..+ ++....+ ....+..++.+ ++.+..+ ..
T Consensus 92 v~enl~~~~~~~----~~~---~~~~~~~------------------------~~~~~~~~~~l~~~l~~~~~-----~~ 135 (234)
T cd03251 92 VAENIAYGRPGA----TRE---EVEEAAR------------------------AANAHEFIMELPEGYDTVIG-----ER 135 (234)
T ss_pred HHHHhhccCCCC----CHH---HHHHHHH------------------------HcCcHHHHHhcccCcceeec-----cC
Confidence 999998864211 000 0000000 00123345555 5544433 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+.|+|+++| ...++.. ||++++|++
T Consensus 136 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh-~~~~~~~-~d~v~~l~~ 211 (234)
T cd03251 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAH-RLSTIEN-ADRIVVLED 211 (234)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEec-CHHHHhh-CCEEEEecC
Confidence 57899999999999999999999999999999999999999999999985 3566666655 4556655 999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (234)
T cd03251 212 GKIVERGTHEELLA 225 (234)
T ss_pred CeEeeeCCHHHHHH
Confidence 99999999887754
No 265
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-34 Score=309.83 Aligned_cols=207 Identities=22% Similarity=0.314 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--C---CCCeeeEEEECCeeCCCc-----cccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--P---TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~--~---~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ | + +|+|.+||.++... ..++.++|++|+.
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH---EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCC---ccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 49999999999999999999999999999999999864 2 5 89999999987532 1246799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.+.....+...+ + .....+++.++.+||.......
T Consensus 94 ~~~~-~t~~~nl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~ 139 (250)
T PRK14266 94 NPFP-KSIFDNVAYGLRIHGEDDE-----D----------------------------FIEERVEESLKAAALWDEVKDK 139 (250)
T ss_pred ccCc-chHHHHHHhHHhhcCCCCH-----H----------------------------HHHHHHHHHHHHcCCchhHHHH
Confidence 7777 4999999887543211000 0 0011244567777775432112
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. .+.|+|++ +|...++.+.+|++
T Consensus 140 ~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tiii~-sh~~~~~~~~~~~i 215 (250)
T PRK14266 140 L-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK--EDYTIVIV-THNMQQATRVSKYT 215 (250)
T ss_pred H-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cCCeEEEE-ECCHHHHHhhcCEE
Confidence 2 34567899999999999999999999999999999999999999999999984 35555555 55677899999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 216 SFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEEECCeEEEeCCHHHHH
Confidence 999999999999988764
No 266
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=322.60 Aligned_cols=224 Identities=25% Similarity=0.334 Sum_probs=182.0
Q ss_pred ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 001957 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (991)
Q Consensus 116 ~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL 195 (991)
...|.|+++++.+.+ .++||+|+|+.+++|++++++||+|+||||++
T Consensus 260 ~g~v~F~~V~F~y~~---------------------------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~ 306 (497)
T COG5265 260 LGAVAFINVSFAYDP---------------------------------RRPILNGISFTIPLGKTVAIVGESGAGKSTIL 306 (497)
T ss_pred cceEEEEEEEeeccc---------------------------------cchhhcCccccccCccEEEEEeCCCCcHHHHH
Confidence 556999999988743 24599999999999999999999999999999
Q ss_pred HHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 196 LALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 196 ~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
++|-++++++ +|.|++||+++.... .++.+|.|||+ ..+++-|...|+.|+.- ....++.....+
T Consensus 307 rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQD-tvLFNDti~yni~ygr~----~at~eev~aaa~---- 374 (497)
T COG5265 307 RLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQD-TVLFNDTIAYNIKYGRP----DATAEEVGAAAE---- 374 (497)
T ss_pred HHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCccc-ceehhhhHHHHHhccCc----cccHHHHHHHHH----
Confidence 9999999999 999999999987543 35789999995 55667899999998742 111111111111
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs 352 (991)
..+. .--+..|++.+||.||.++.+ |||||||||+|||+++.+|+||++||.||
T Consensus 375 ------------------~aqi-------~~fi~~lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 375 ------------------AAQI-------HDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred ------------------Hhhh-------hHHHHhCchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 0111 112345899999999988776 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 353 GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
+||+.|..+|...|++.+. +.|+++.- |+..+.--+|.|++|++|+|++.|.+++++.
T Consensus 429 aldt~te~~iq~~l~~~~~--~rttlvia--hrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 429 ALDTHTEQAIQAALREVSA--GRTTLVIA--HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HhhhhHHHHHHHHHHHHhC--CCeEEEEe--ehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9999999999999999863 45555543 3556777899999999999999999999985
No 267
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7.9e-34 Score=309.18 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=164.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCeeCCCccc---cc-eEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP---QR-TAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~~~---~~-~~~yv~Q~d~~~~ 239 (991)
.+|+|||++|++|++++|+||||||||||+++|+|+ ++|+ +|+|.++|.++..... .+ .++|++|++.+++
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 499999999999999999999999999999999998 4677 9999999998865432 12 4789999998999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+|+.|++.+......... +. ++.+. .+....++++++.+||. ...++.++
T Consensus 98 ~~~~~~~l~~~~~~~~~~~---------------~~-~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~- 149 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQ---------------GL-PELDP-----------LEFLEIINEKLKLVGMDPSFLSRNVN- 149 (252)
T ss_pred cccHHHHHHHhhhhhhccc---------------cc-ccccH-----------HHHHHHHHHHHHHcCCchhhhccccc-
Confidence 9999999987643210000 00 00000 00112345678899996 34444332
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vil 397 (991)
.+|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|+++ |..+.+... +|++++
T Consensus 150 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~t-H~~~~~~~~~~d~i~~ 224 (252)
T CHL00131 150 ---EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILIT-HYQRLLDYIKPDYVHV 224 (252)
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cCHHHHHhhhCCEEEE
Confidence 25999999999999999999999999999999999999999999999864 466666654 556666666 899999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|+++.+
T Consensus 225 l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 225 MQNGKIIKTGDAELA 239 (252)
T ss_pred EeCCEEEEecChhhh
Confidence 999999999998844
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=309.00 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=164.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC---CeeeEEEECCeeCCCcc---ccceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~---~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||+.+++|++++|+||||||||||+++|+|.++|+. .+.|+|.++|+++.... .++.++|++|++.++
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 459999999999999999999999999999999999998861 12355555556554322 246789999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+.... .+....++++++.++|.+...... +
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 148 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEK---------------------------------REIKKIVEECLRKVGLWKEVYDRL-N 148 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCccchhhh-c
Confidence 999999999987542211000 001113456788888853211111 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ +.|+|+++ |...++.++||++++|
T Consensus 149 ~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvs-h~~~~~~~~~d~v~~l 225 (257)
T PRK14246 149 SPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVS-HNPQQVARVADYVAFL 225 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEE-CCHHHHHHhCCEEEEE
Confidence 34578999999999999999999999999999999999999999999998853 45666654 5566888999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|+++..|+++++.
T Consensus 226 ~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 226 YNGELVEWGSSNEIF 240 (257)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
No 269
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=315.38 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=163.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV 243 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|+..+. ...++
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 5999999999999999999999999999999999999998 999999999875432234699999986542 34578
Q ss_pred HHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+|++.++.... +.... +. ......++++++.+||.+..|+.+ .
T Consensus 98 ~~~i~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~gl~~~~~~~~-----~ 141 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRR-------------------AK------------KRDRQIVTAALARVDMVEFRHRQI-----G 141 (272)
T ss_pred hhheecccccccccccC-------------------CC------------HHHHHHHHHHHHHcCChhHhcCCc-----c
Confidence 99987642100 00000 00 000123456788999988777655 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|...++.+++|+++++ +|+
T Consensus 142 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tvii-vsH~~~~~~~~~d~v~~~-~G~ 218 (272)
T PRK15056 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLV-STHNLGSVTEFCDYTVMV-KGT 218 (272)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 4556555 456677889999999888 899
Q ss_pred EEEecCHHHH
Q 001957 403 IVYQGPRELV 412 (991)
Q Consensus 403 iv~~G~~~~~ 412 (991)
+++.|+++++
T Consensus 219 i~~~g~~~~~ 228 (272)
T PRK15056 219 VLASGPTETT 228 (272)
T ss_pred EEeecCHHhc
Confidence 9999998875
No 270
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-34 Score=378.35 Aligned_cols=256 Identities=19% Similarity=0.218 Sum_probs=191.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC--CC-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (991)
+.....+||+.++.+.++|.- +..+....+ -| ..+|+|+|+++.+..
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~-----~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------- 1246 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEAT-----AIIENNRPVSGWPSRGSIKFEDVHLRYRP------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHhcCCcccc-----ccccCCCCCCCCCCCCcEEEEEEEEEECC-------------------------
Confidence 345566778777776554411 000000001 12 357999999999832
Q ss_pred hhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEe
Q 001957 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (991)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (991)
....+|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+
T Consensus 1247 -------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1247 -------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred -------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 1134999999999999999999999999999999999999998 9999999999987653 57899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|++.+| +.||||||+++.. ...+.+.++ .+.+++ +.. +-.++...
T Consensus 1317 Qdp~LF-~gTIr~NL~~~~~-----~sdeei~~a---l~~a~l------------------------~~~--I~~lp~GL 1361 (1495)
T PLN03232 1317 QSPVLF-SGTVRFNIDPFSE-----HNDADLWEA---LERAHI------------------------KDV--IDRNPFGL 1361 (1495)
T ss_pred CCCeee-CccHHHHcCCCCC-----CCHHHHHHH---HHHcCC------------------------HHH--HHhCcCCC
Confidence 987665 5699999987421 111111111 111110 111 22467788
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+..| .. ++...|
T Consensus 1362 dt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAH-Rl-~ti~~~ 1436 (1495)
T PLN03232 1362 DAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAH-RL-NTIIDC 1436 (1495)
T ss_pred CceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeC-CH-HHHHhC
Confidence 999986 445699999999999999999999999999999999999999999999863 3566665544 33 566679
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|++|++|+++++|+++++++
T Consensus 1437 DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1437 DKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999873
No 271
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=292.76 Aligned_cols=211 Identities=25% Similarity=0.360 Sum_probs=182.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIG 239 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~ 239 (991)
..+.||+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|+++.....+ +..+..-|+.....
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 4567999999999999999999999999999999999999998 99999999999765433 56677788877778
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+|-+.|+.--...|.- ..+....+++.++.|+|.+..| +
T Consensus 89 rlTV~dLv~FGRfPYSqGRl--------------------------------t~eD~~~I~~aieyl~L~~l~d-----r 131 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGRL--------------------------------TKEDRRIINEAIEYLHLEDLSD-----R 131 (252)
T ss_pred eeEHHHHhhcCCCcccCCCC--------------------------------chHHHHHHHHHHHHhcccchHH-----H
Confidence 89999999998643322210 0112235778899999988876 5
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..+||||||||.-||+.++.+.+.++||||.+.||-..+.++|+.||+++++.++|+|+.+ |+...+..++|.|+-|+
T Consensus 132 yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVl-HDINfAS~YsD~IVAlK 210 (252)
T COG4604 132 YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-HDINFASCYSDHIVALK 210 (252)
T ss_pred hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEE-ecccHHHhhhhheeeec
Confidence 56789999999999999999999999999999999999999999999999999888888875 57889999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++.+|+++++.+
T Consensus 211 ~G~vv~~G~~~eii~ 225 (252)
T COG4604 211 NGKVVKQGSPDEIIQ 225 (252)
T ss_pred CCEEEecCCHHHhcC
Confidence 999999999999863
No 272
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-34 Score=377.81 Aligned_cols=255 Identities=20% Similarity=0.231 Sum_probs=192.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC---C-ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---P-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (991)
+.....+||+.++.+.++|.- ...+. +.++ | ..+|+|+|+++.+..
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~-----~~~~~-~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAP-----LVIEN-NRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCccc-----ccccC-CCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 455666788877776554410 00000 1111 2 357999999999832
Q ss_pred hhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEE
Q 001957 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (991)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv 231 (991)
....+|+|||++|+|||.+||+|+||||||||+++|.|+++|+ +|+|++||.++.+... ++.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987654 4789999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
+|++.+| ..||||||.++.. ...+.+.++.+ .+++ +.. +..|+..
T Consensus 1319 pQdp~LF-~GTIreNLd~~~~-----~tdeei~~Al~---~a~l------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLF-SGTVRFNLDPFNE-----HNDADLWESLE---RAHL------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCccc-cccHHHHhCcCCC-----CCHHHHHHHHH---HcCc------------------------HHH--HHhCccc
Confidence 9977655 5699999987521 11111111111 1100 111 2346778
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
.||.||+ ....||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+.. |.. ++...
T Consensus 1364 Ldt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IA-HRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIA-HRL-NTIID 1438 (1622)
T ss_pred cCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEe-CCh-HHHHh
Confidence 8999986 445799999999999999999999999999999999999999999999864 355665554 433 56667
Q ss_pred cCeEEEecCCeEEEecCHHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999974
No 273
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=309.54 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=162.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCeeCCC----c---cccceEEEEecCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE----F---VPQRTAAYISQHDN 236 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~--~~~G~I~~nG~~~~~----~---~~~~~~~yv~Q~d~ 236 (991)
.+|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. . ..++.++|++|+..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 59999999999999999999999999999999999987510 128999999987631 1 12457899999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+++. ||+||+.++....+...+ .. .+..++..++.+++........
T Consensus 110 ~~~~-tv~eni~~~~~~~~~~~~-----~~----------------------------~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 110 PFPK-SIFENVAYGLRIRGVKRR-----SI----------------------------LEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred CCcc-hHHHHHHhHHHHcCCChH-----HH----------------------------HHHHHHHHHHHcCCchhhhHHH
Confidence 8875 999999987543221100 00 0012334555666532111111
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|+ ++|..+++.+++|+++
T Consensus 156 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiii-vth~~~~~~~~~d~i~ 231 (265)
T PRK14252 156 -GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILI-VTHNMQQAARVSDYTA 231 (265)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEE-EecCHHHHHHhCCEEE
Confidence 244568999999999999999999999999999999999999999999999853 445544 5677788999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|++|+++..|+.+++.
T Consensus 232 ~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 232 YMYMGELIEFGATDTIF 248 (265)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 274
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-34 Score=304.45 Aligned_cols=193 Identities=26% Similarity=0.305 Sum_probs=156.2
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 162 ~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
...+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... .+...+.+.+
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~---------~~~~~~~~~~ 99 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLL---------GLGGGFNPEL 99 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchhh---------cccccCCCCC
Confidence 34467999999999999999999999999999999999999998 99999999875321 1123445789
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.+.....+... . +....++++++.+||++..++.+
T Consensus 100 tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 140 (224)
T cd03220 100 TGRENIYLNGRLLGLSR----------K------------------------EIDEKIDEIIEFSELGDFIDLPV----- 140 (224)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCh-----
Confidence 99999988754321100 0 00112456788899988777655
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|...++.+++|++++|++|
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G 218 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVIL-VSHDPSSIKRLCDRALVLEKG 218 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999865 3555555 456677888999999999999
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 219 ~i~~~g 224 (224)
T cd03220 219 KIRFDG 224 (224)
T ss_pred EEEecC
Confidence 998765
No 275
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.7e-34 Score=299.53 Aligned_cols=179 Identities=26% Similarity=0.334 Sum_probs=149.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|.. +|+ +|+|.+||+++..... ++.++|++|+..+++
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 5999999999999999999999999999999999994 677 9999999999865432 235999999888888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|+++++. .
T Consensus 91 ~~~~~~~l~----------------------------------------------------------------------~ 100 (200)
T cd03217 91 GVKNADFLR----------------------------------------------------------------------Y 100 (200)
T ss_pred CccHHHHHh----------------------------------------------------------------------h
Confidence 888776550 0
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh-hcCeEEEe
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-LFDDIILL 398 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~-lfD~vilL 398 (991)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ .+.+.+ ++|++++|
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~-~~~~~~~~~d~i~~l 178 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHY-QRLLDYIKPDRVHVL 178 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhhCCEEEEE
Confidence 0136999999999999999999999999999999999999999999999864 46677776555 456766 79999999
Q ss_pred cCCeEEEecCHHHHHHHHHhcC
Q 001957 399 SDGQIVYQGPRELVLEFFASMG 420 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G 420 (991)
++|++++.|+.+ +.++|.+.|
T Consensus 179 ~~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 179 YDGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred ECCEEEEEccHH-HHhhhcccc
Confidence 999999999555 555554443
No 276
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-33 Score=300.21 Aligned_cols=188 Identities=25% Similarity=0.350 Sum_probs=158.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.....++.++|++|++.+++.+|++|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999998865333456899999988888899999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+.....+.. ....++.+++.++|++..++.+ ..||
T Consensus 102 ~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T PRK13543 102 NLHFLCGLHGRR-------------------------------------AKQMPGSALAIVGLAGYEDTLV-----RQLS 139 (214)
T ss_pred HHHHHHHhcCCc-------------------------------------HHHHHHHHHHHcCChhhccCCh-----hhCC
Confidence 998865432110 0012345788899987766554 5799
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+ ++|+..++.+++|++++|+.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALV-TTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999999999998865 4555555 56677899999999999863
No 277
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.6e-33 Score=305.91 Aligned_cols=219 Identities=24% Similarity=0.310 Sum_probs=165.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|.++....+ ++.++|++|+..+++
T Consensus 15 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 4999999999999999999999999999999999995 577 9999999998754332 245899999988888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (991)
.+|+.+++.+...... .. +.. ...+ .......++.+++.++|+. ..++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~---------~~-~~~--------~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (248)
T PRK09580 92 GVSNQFFLQTALNAVR---------SY-RGQ--------EPLD---------RFDFQDLMEEKIALLKMPEDLLTRSVN- 143 (248)
T ss_pred chhHHHHHHHhhhhhh---------cc-ccc--------ccch---------HHHHHHHHHHHHHHcCCChhhcccCCC-
Confidence 8888777654321100 00 000 0000 0011224567888999953 3443321
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCeEEE
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~vil 397 (991)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .++|+|+++ |....+... +|+|++
T Consensus 144 ---~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~s-H~~~~~~~~~~d~i~~ 218 (248)
T PRK09580 144 ---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVT-HYQRILDYIKPDYVHV 218 (248)
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CCHHHHHhhhCCEEEE
Confidence 37999999999999999999999999999999999999999999999864 456666655 455566666 899999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCC
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGF 421 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~ 421 (991)
|++|++++.|+.+.+ +.++..++
T Consensus 219 l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 219 LYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999999998865 34444443
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=304.02 Aligned_cols=198 Identities=21% Similarity=0.247 Sum_probs=163.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
..+.+|+|+|++|+||++++|+|||||||||||++|+|+++|+ +|+|.++|+ ++++.|+..+.+.+|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~----------~~~~~~~~~~~~~~t 101 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE----------VSVIAISAGLSGQLT 101 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE----------EeEEecccCCCCCCc
Confidence 4467999999999999999999999999999999999999998 999999985 356677776778899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+... + +....++.+++.++|.+..+.. ++
T Consensus 102 v~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 102 GIENIEFKMLCMGFKR--K--------------------------------EIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred HHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 9999987654322110 0 0011235567788887766544 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .++|+|++ +|...++.+++|+|++|++|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIii-sH~~~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFV-SHNLGQVRQFCTKIAWIEGGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEE-cCCHHHHHHHcCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999854 45566655 556778889999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 999999988764
No 279
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=314.71 Aligned_cols=219 Identities=24% Similarity=0.350 Sum_probs=166.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-----CCCCeeeEEEECCeeCCCcc-----ccceEEEEecCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-----~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|.++.... .++.++|++|+.
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~---~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI---DGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999985 45 999999999875321 235799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.+.++.... ...... .+. . . .......++.+++.++|....++.
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~-~~~~~~------~~~--~-~-----------~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINT-GLLARL------LGR--D-D-----------KDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccc-cccccc------ccc--C-c-----------hHHHHHHHHHHHHHcCCchhhhHH
Confidence 7776 5999999987543211000 000000 000 0 0 000112356678888885433333
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..++.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++ +.|+|+ ++|....+.+++|++
T Consensus 194 ~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiii-vtH~~~~i~~~~d~i 269 (305)
T PRK14264 194 L-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVV-VTHNMQQAARISDQT 269 (305)
T ss_pred h-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEE-EEcCHHHHHHhcCEE
Confidence 2 355678999999999999999999999999999999999999999999999864 355555 456677889999997
Q ss_pred -EEecCCeEEEecCHHHHH
Q 001957 396 -ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 -ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++++|+++++.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEecCCEEEEeCCHHHHH
Confidence 578999999999988764
No 280
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-34 Score=343.67 Aligned_cols=226 Identities=25% Similarity=0.375 Sum_probs=166.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcC--CCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVG--IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
++....++|+.++.+.+++. .+...... ......++.|+|+++.++.
T Consensus 298 ~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-------------------------- 346 (529)
T TIGR02868 298 TRVRAAAERIEEVTGAKGPR-----PEGVVPAAGALGLGKPTLELRDLSFGYPG-------------------------- 346 (529)
T ss_pred HHHHHHHHHHHHHhcCCCCc-----CCCCCCCCcccCCCCceEEEEEEEEecCC--------------------------
Confidence 45566677777776554430 00000000 1112346999999998731
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
+ ..+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++. . ++.++||+|
T Consensus 347 ----~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q 415 (529)
T TIGR02868 347 ----S---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQ 415 (529)
T ss_pred ----C---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEcc
Confidence 1 13999999999999999999999999999999999999998 99999999998876 4 368999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++. +++.||+|||.++.. ....+...+ +....+ .++ .+..|++..|
T Consensus 416 ~~~-lF~~TI~eNI~~g~~----~~~~e~i~~---------------------al~~a~------l~~--~i~~lp~Gld 461 (529)
T TIGR02868 416 DAH-LFDTTVRDNLRLGRP----DATDEELWA---------------------ALERVG------LAD--WLRSLPDGLD 461 (529)
T ss_pred Ccc-cccccHHHHHhccCC----CCCHHHHHH---------------------HHHHcC------CHH--HHHhCccccc
Confidence 765 556799999998631 111111111 111000 011 1335788899
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
|.||+.. ..||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|+..|+
T Consensus 462 T~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 462 TVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHH 528 (529)
T ss_pred chhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecC
Confidence 9999744 5699999999999999999999999999999999999999999999863 46777777665
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-33 Score=297.27 Aligned_cols=186 Identities=24% Similarity=0.316 Sum_probs=154.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 5999999999999999999999999999999999999998 999999999875422 24578999999888899999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.+.....+. .....++.+++.+||.+..|+. +..
T Consensus 92 ~e~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~-----~~~ 129 (204)
T PRK13538 92 LENLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVP-----VRQ 129 (204)
T ss_pred HHHHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCC-----hhh
Confidence 9999987543210 0011346688999998766654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|...++....++++++
T Consensus 130 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILT-THQDLPVASDKVRKLRL 202 (204)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecChhhhccCCceEEec
Confidence 999999999999999999999999999999999999999999999864 45666665 45566777777788777
No 282
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-34 Score=275.39 Aligned_cols=202 Identities=28% Similarity=0.352 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Cc-------cccceEEEEecCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EF-------VPQRTAAYISQHD 235 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~-------~~~~~~~yv~Q~d 235 (991)
.++|.||++..+.|+.+.++||||+|||||++.|.=+.-|. +|+..+.|...+ +. ..++.+|+|+|+-
T Consensus 15 ~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 45899999999999999999999999999999999888888 999999886543 21 1246789999999
Q ss_pred CCCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 NHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.++|.+||.|||--+. +..|.. ..++.....++|+.|.|.+.+|
T Consensus 92 ~lwphltv~enlieap~kv~gl~----------------------------------~~qa~~~a~ellkrlrl~~~ad- 136 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLS----------------------------------KDQALARAEKLLKRLRLKPYAD- 136 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCC----------------------------------HHHHHHHHHHHHHHhccccccc-
Confidence 9999999999997653 122211 1112234567899999999887
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
+++-.|||||+|||+|||||+..|.+|++||||++||+.-+.++++.+++++. .|.|-||. +|..+-+...+.+
T Consensus 137 ----r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqviv-thev~va~k~as~ 210 (242)
T COG4161 137 ----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIV-THEVEVARKTASR 210 (242)
T ss_pred ----cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEE-EeehhHHHhhhhh
Confidence 45567999999999999999999999999999999999999999999999975 56666665 4667788889999
Q ss_pred EEEecCCeEEEecCHH
Q 001957 395 IILLSDGQIVYQGPRE 410 (991)
Q Consensus 395 vilL~~G~iv~~G~~~ 410 (991)
|+.|.+|+||++|+.+
T Consensus 211 vvyme~g~ive~g~a~ 226 (242)
T COG4161 211 VVYMENGHIVEQGDAS 226 (242)
T ss_pred eEeeecCeeEeecchh
Confidence 9999999999999876
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7.5e-34 Score=341.09 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC--C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (991)
+.+|+|||++|++|++++|+||||||||||+++|+|+++ + +|+|+++|+++..... ++.++||+|+. .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 569999999999999999999999999999999999985 5 8999999998754321 34689999985 4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (991)
+++.+||+||+.++....+.... .. +....++++++.+||+ ...+.
T Consensus 375 l~~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~- 421 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQPTLS--------AA------------------------QREQQVIAVMEEVGLDPETRHR- 421 (529)
T ss_pred cCCcccHHHHHHHHHHhccccCC--------hH------------------------HHHHHHHHHHHHcCCCHHHHhc-
Confidence 78889999999987532210000 00 0112345688999996 35554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.++||+|
T Consensus 422 ----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-vsHd~~~~~~~~d~i 496 (529)
T PRK15134 422 ----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF-ISHDLHVVRALCHQV 496 (529)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhcCeE
Confidence 446899999999999999999999999999999999999999999999987644555555 567888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|+++..|+++++.
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999988774
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=306.36 Aligned_cols=189 Identities=24% Similarity=0.339 Sum_probs=156.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCC--CCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE--MTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~--lTV 243 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|+..+++. .|+
T Consensus 18 ~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK--------LRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc--------cCEEEeccccccccccChhH
Confidence 4999999999999999999999999999999999999998 999999872 359999998776665 477
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++++.+... . . ...+..+++.+||.+..|+. +..
T Consensus 87 ~~~~~~~~~---~--~------------------------------------~~~~~~~l~~~gl~~~~~~~-----~~~ 120 (251)
T PRK09544 87 NRFLRLRPG---T--K------------------------------------KEDILPALKRVQAGHLIDAP-----MQK 120 (251)
T ss_pred HHHHhcccc---c--c------------------------------------HHHHHHHHHHcCChHHHhCC-----hhh
Confidence 777653210 0 0 01134578889998766654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|+.+++.+.+|+|++|+ |++
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii-vsH~~~~i~~~~d~i~~l~-~~i 198 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM-VSHDLHLVMAKTDEVLCLN-HHI 198 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHHhCCEEEEEC-Cce
Confidence 99999999999999999999999999999999999999999999986533555555 5667778999999999996 479
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 199 ~~~g~~~~~~ 208 (251)
T PRK09544 199 CCSGTPEVVS 208 (251)
T ss_pred EeeCCHHHHh
Confidence 9999988764
No 285
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.2e-34 Score=303.33 Aligned_cols=193 Identities=26% Similarity=0.322 Sum_probs=150.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..++ ..|
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~t 93 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGT 93 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cch
Confidence 5999999999999999999999999999999999999998 999999999875432 246799999987755 469
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-------ccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-------CADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt~ 315 (991)
|+||+.+.... ..+ + +.+.++.++|.+ ..++.
T Consensus 94 v~enl~~~~~~-----~~~---~---------------------------------~~~~~~~~~l~~~~~~l~~~l~~~ 132 (221)
T cd03244 94 IRSNLDPFGEY-----SDE---E---------------------------------LWQALERVGLKEFVESLPGGLDTV 132 (221)
T ss_pred HHHHhCcCCCC-----CHH---H---------------------------------HHHHHHHhCcHHHHHhcccccccc
Confidence 99999753210 000 0 011122222221 22233
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
. +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |...++. .+|++
T Consensus 133 ~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~s-h~~~~~~-~~d~i 207 (221)
T cd03244 133 V-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIA-HRLDTII-DSDRI 207 (221)
T ss_pred c-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEe-CCHHHHh-hCCEE
Confidence 2 245678999999999999999999999999999999999999999999998743 45666555 4555665 49999
Q ss_pred EEecCCeEEEecC
Q 001957 396 ILLSDGQIVYQGP 408 (991)
Q Consensus 396 ilL~~G~iv~~G~ 408 (991)
++|++|++++.|+
T Consensus 208 ~~l~~g~~~~~~~ 220 (221)
T cd03244 208 LVLDKGRVVEFDS 220 (221)
T ss_pred EEEECCeEEecCC
Confidence 9999999999876
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=338.07 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|||+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999998 9999999998754321 3569999999888899
Q ss_pred CCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
+||+||+.++.. ..+.... . .+....++++++.+||.+..+..
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 131 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------Q------------------------DKMYRDTKAIFDELDIDIDPRAK---- 131 (491)
T ss_pred CCHHHHhhcccccccccccC--------H------------------------HHHHHHHHHHHHHcCCCCCccCc----
Confidence 999999988642 1110000 0 00012356688999998766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+.+++.++||+|++|+
T Consensus 132 -~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 132 -VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVY-ISHKMEEIFQLCDEITILR 208 (491)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCHHHHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999865 4555555 5567788999999999999
Q ss_pred CCeEEEecCHHH
Q 001957 400 DGQIVYQGPREL 411 (991)
Q Consensus 400 ~G~iv~~G~~~~ 411 (991)
+|+++..|++++
T Consensus 209 ~G~i~~~~~~~~ 220 (491)
T PRK10982 209 DGQWIATQPLAG 220 (491)
T ss_pred CCEEEeecChhh
Confidence 999999988654
No 287
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=290.32 Aligned_cols=158 Identities=31% Similarity=0.485 Sum_probs=139.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.+||+++... ..++.++|++|+..+++.+||
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 4999999999999999999999999999999999999998 99999999987543 224679999999888888888
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.
T Consensus 91 ~~~~~--------------------------------------------------------------------------- 95 (173)
T cd03230 91 RENLK--------------------------------------------------------------------------- 95 (173)
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 77630
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +.|+|++ +|+..++.+++|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~-th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLS-SHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999998763 5555554 5666788889999999999974
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-33 Score=296.70 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=154.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|++|++|++++|+|+||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 35899999999999999999999999999999999999998 99999999987532 12467999999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..... ....++++++.+||++..++. +.
T Consensus 90 v~e~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 124 (201)
T cd03231 90 VLENLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRP-----VA 124 (201)
T ss_pred HHHHHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCc-----hh
Confidence 999998853110 001245678889998766654 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.| ...+....+|+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH-~~~~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTH-QDLGLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec-CchhhhhccceeEec
Confidence 7999999999999999999999999999999999999999999998765 4667666554 555777799999887
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-33 Score=337.49 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-Cee---CCCcc------ccceEEEEecC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN-GHD---MDEFV------PQRTAAYISQH 234 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n-G~~---~~~~~------~~~~~~yv~Q~ 234 (991)
+.+|+|+||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++ |.+ +.... .++.++|++|+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 46999999999999999999999999999999999999998 9999996 642 22211 13468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc----
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---- 310 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---- 310 (991)
..+++.+||+||+.+...+. .. +. .....++.+++.+||.+
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~-~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~ 418 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLE-LP----------DE------------------------LARMKAVITLKMVGFDEEKAE 418 (520)
T ss_pred cccCCCCcHHHHHHHHHHcC-CC----------HH------------------------HHHHHHHHHHHhCCCCCccch
Confidence 88889999999998864321 00 00 00113456788999975
Q ss_pred -cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 311 -CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
..+ ..+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++.
T Consensus 419 ~~~~-----~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vsHd~~~~~ 492 (520)
T TIGR03269 419 EILD-----KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII-VSHDMDFVL 492 (520)
T ss_pred hhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE-EeCCHHHHH
Confidence 234 4456899999999999999999999999999999999999999999999987644555555 567778899
Q ss_pred hhcCeEEEecCCeEEEecCHHHHHH
Q 001957 390 DLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
++||++++|++|++++.|+++++.+
T Consensus 493 ~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 493 DVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999887643
No 290
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-34 Score=305.51 Aligned_cols=206 Identities=29% Similarity=0.386 Sum_probs=156.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+||.++.... .++.++|++|+..++ ..|
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 90 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDT 90 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cch
Confidence 4899999999999999999999999999999999999998 999999999876432 235689999987666 579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+..... ..+ ++...... ...+..++.+ +...++.+. +.++
T Consensus 91 v~~nl~~~~~~~----~~~---~~~~~~~~------------------------~~l~~~~~~l--~~~~~~~~~-~~~~ 136 (236)
T cd03253 91 IGYNIRYGRPDA----TDE---EVIEAAKA------------------------AQIHDKIMRF--PDGYDTIVG-ERGL 136 (236)
T ss_pred HHHHHhhcCCCC----CHH---HHHHHHHH------------------------cCcHHHHHhc--cccccchhh-cCCC
Confidence 999998863210 000 00000000 0011222222 222333332 3467
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.| ...++. .+|++++|++|+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh-~~~~~~-~~d~~~~l~~g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAH-RLSTIV-NADKIIVLKDGR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcC-CHHHHH-hCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999998753 566666654 555664 499999999999
Q ss_pred EEEecCHHHHH
Q 001957 403 IVYQGPRELVL 413 (991)
Q Consensus 403 iv~~G~~~~~~ 413 (991)
+++.|+.+++.
T Consensus 213 i~~~~~~~~~~ 223 (236)
T cd03253 213 IVERGTHEELL 223 (236)
T ss_pred EEeeCCHHHHh
Confidence 99999887664
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-33 Score=306.73 Aligned_cols=204 Identities=26% Similarity=0.309 Sum_probs=156.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|+||++++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++ .|
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~t 110 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GS 110 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cH
Confidence 4999999999999999999999999999999999999998 999999999886533 2467899999886665 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+...... .. +...++. . ....+..++.+ |++ +.++ ..
T Consensus 111 v~~nl~~~~~~----~~-~~~~~~l---------------------~------~~~l~~~~~~~~~~l~----~~~~-~~ 153 (257)
T cd03288 111 IRFNLDPECKC----TD-DRLWEAL---------------------E------IAQLKNMVKSLPGGLD----AVVT-EG 153 (257)
T ss_pred HHHhcCcCCCC----CH-HHHHHHH---------------------H------HhCcHHHHhhcccccC----cEec-cC
Confidence 99998542110 00 0000000 0 00112234443 443 3333 35
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.| ..+++.. +|+|++|++
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh-~~~~~~~-~dri~~l~~ 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAH-RVSTILD-ADLVLVLSR 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEec-ChHHHHh-CCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999863 3566666655 4556654 999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+++++.+
T Consensus 230 G~i~~~g~~~~~~~ 243 (257)
T cd03288 230 GILVECDTPENLLA 243 (257)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999999887753
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.2e-33 Score=294.77 Aligned_cols=177 Identities=28% Similarity=0.351 Sum_probs=143.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCCC-CC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDN-HI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~-~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+.. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 45999999999999999999999999999999999999998 99999999987421 12356899999863 44
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+.+||+||+.+.....+... . +....++++++.+||++..|+.
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~--- 124 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSE----------A------------------------EVERRVREALTAVGASGLRERP--- 124 (190)
T ss_pred ccccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCchhhhhCC---
Confidence 56899999998754321100 0 0111346678899998766654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecC
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~ 384 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++
T Consensus 125 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 125 --THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 468999999999999999999999999999999999999999999999865 466777766554
No 293
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-33 Score=294.41 Aligned_cols=183 Identities=27% Similarity=0.361 Sum_probs=150.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 2357899999988888899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+.....+. ....++++++.+||.+..++.+ .
T Consensus 90 v~~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 126 (198)
T TIGR01189 90 ALENLHFWAAIHGG--------------------------------------AQRTIEDALAAVGLTGFEDLPA-----A 126 (198)
T ss_pred HHHHHHHHHHHcCC--------------------------------------cHHHHHHHHHHcCCHHHhcCCh-----h
Confidence 99999886432110 0012355788899987766554 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.|||||||||+||++++.+|++++|||||+|||..++..+.+.|+++++ .+.|+|+++|++.+ -.+|+++.
T Consensus 127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 7999999999999999999999999999999999999999999999865 57788888777642 23466554
No 294
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-33 Score=372.68 Aligned_cols=256 Identities=17% Similarity=0.198 Sum_probs=192.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC---CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID---LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (991)
+.....++|+.++.+.++|.- ...+....+ ++..+|+|+|+++.+...
T Consensus 1247 e~~~~s~eRi~~~~~~~~e~~-----~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------------------------ 1297 (1522)
T TIGR00957 1247 ETNIVAVERLKEYSETEKEAP-----WQIQETAPPSGWPPRGRVEFRNYCLRYRED------------------------ 1297 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcc-----ccccCCCCCCCCCCCCcEEEEEEEEEeCCC------------------------
Confidence 456667888888876554410 000000111 224679999999988421
Q ss_pred hhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEe
Q 001957 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (991)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (991)
...+|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|++||.++.+... ++.++||+
T Consensus 1298 --------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1298 --------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred --------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEEC
Confidence 124999999999999999999999999999999999999998 9999999999987654 57899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|++.+|. .||||||+.... ...+.+.++ .+.+++ +.. +-.|++..
T Consensus 1367 Qdp~LF~-gTIr~NLdp~~~-----~sdeei~~a---l~~a~l------------------------~~~--I~~lp~GL 1411 (1522)
T TIGR00957 1367 QDPVLFS-GSLRMNLDPFSQ-----YSDEEVWWA---LELAHL------------------------KTF--VSALPDKL 1411 (1522)
T ss_pred CCCcccC-ccHHHHcCcccC-----CCHHHHHHH---HHHcCc------------------------HHH--HhhCccCC
Confidence 9776665 699999973211 111111111 111110 111 22456788
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+..|+ .++...+
T Consensus 1412 dt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHR--l~ti~~~ 1486 (1522)
T TIGR00957 1412 DHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHR--LNTIMDY 1486 (1522)
T ss_pred CceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecC--HHHHHhC
Confidence 999986 445699999999999999999999999999999999999999999999854 35666655443 3667789
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|++|++|+|+++|+++++++
T Consensus 1487 DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1487 TRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874
No 295
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-34 Score=279.68 Aligned_cols=209 Identities=25% Similarity=0.358 Sum_probs=175.6
Q ss_pred ccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c---------
Q 001957 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--------- 224 (991)
Q Consensus 161 ~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~--------- 224 (991)
+.+...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|+ .|.|.+||..+.-.. +
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 345677999999999999999999999999999999999999998 999999998763211 0
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHHHH-hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHH
Q 001957 225 QRTAAYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (991)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (991)
+...++|+|+.+++..|||.||+.-+.. ..|.. + .++....+.+|
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~----------k------------------------~ea~e~Ae~~L 137 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS----------K------------------------AEAIERAEKYL 137 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCC----------H------------------------HHHHHHHHHHH
Confidence 1245899999999999999999876531 11111 0 11223456789
Q ss_pred HHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
...||.+..| .++..|||||+||++|||||+.+|+++++|||||+||+.---++++.+++++. .|+|.++. +|
T Consensus 138 ~kVGi~ek~~-----~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~V-TH 210 (256)
T COG4598 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVV-TH 210 (256)
T ss_pred HHhCchhhhh-----cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEE-ee
Confidence 9999998887 45678999999999999999999999999999999999999999999999997 56676665 57
Q ss_pred CCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 384 PAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
.+..+.+...+|+.|++|.|-++||++++.
T Consensus 211 EM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ehhHHHhhhhheEEeecceecccCChHHHh
Confidence 888999999999999999999999999883
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.9e-33 Score=299.33 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=152.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC--Ce--eCCCccc-------cceEEEEec
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN--GH--DMDEFVP-------QRTAAYISQ 233 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n--G~--~~~~~~~-------~~~~~yv~Q 233 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++ |. ++..... ++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999999998 9999998 42 4332211 246899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-c
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-A 312 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~ 312 (991)
+..+++.+||+|++.+.....+... . .....+..+++.+||.+. .
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPR----------E------------------------AARARARELLARLNIPERLW 143 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhh
Confidence 9888999999999998654322100 0 001124557888999753 3
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+. .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |....+.+++
T Consensus 144 ~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vs-H~~~~~~~~~ 216 (224)
T TIGR02324 144 HL-----PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIF-HDEEVRELVA 216 (224)
T ss_pred hC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhc
Confidence 43 4568999999999999999999999999999999999999999999999854 456666554 5566777899
Q ss_pred CeEEEec
Q 001957 393 DDIILLS 399 (991)
Q Consensus 393 D~vilL~ 399 (991)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998874
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-33 Score=295.72 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=152.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.|++||+++|+||||||||||+++|+|.++++ +|+|+++|.++.....++.++|++|++.+++.+||+|
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 5999999999999999999999999999999999999998 9999999988642223567899999888889999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..+..+.. ...++++++.+||.+..+.. ++.||
T Consensus 93 ~l~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS 129 (207)
T PRK13539 93 NLEFWAAFLGGE--------------------------------------ELDIAAALEAVGLAPLAHLP-----FGYLS 129 (207)
T ss_pred HHHHHHHhcCCc--------------------------------------HHHHHHHHHHcCCHHHHcCC-----hhhcC
Confidence 998764332100 01245678899997765544 45899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.| ...++.. |+++.+..
T Consensus 130 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH-~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATH-IPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-Cchhhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999999999865 4666666554 5556665 99988754
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-33 Score=323.29 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+. ++.+...+.+.+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~----------~i~~~~~l~~~lTV~ 103 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA----------LIAISSGLNGQLTGI 103 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee----------eEEeccccCCCCcHH
Confidence 46999999999999999999999999999999999999998 99999999752 222334456779999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++.+.....+... . +....++.+++.++|.+..+.. ++.|
T Consensus 104 EnL~l~~~~~~~~~----------~------------------------e~~e~i~elLe~lgL~~~ld~~-----~~~L 144 (549)
T PRK13545 104 ENIELKGLMMGLTK----------E------------------------KIKEIIPEIIEFADIGKFIYQP-----VKTY 144 (549)
T ss_pred HHHHhhhhhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhhCC-----cccC
Confidence 99988654322100 0 0011245678889998776654 4689
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++ +|...++.++||++++|++|+++
T Consensus 145 SGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIV-SHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFI-SHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999754 45565555 55667889999999999999999
Q ss_pred EecCHHHHHHHH
Q 001957 405 YQGPRELVLEFF 416 (991)
Q Consensus 405 ~~G~~~~~~~~f 416 (991)
+.|+++++..-|
T Consensus 223 ~~G~~~el~~~~ 234 (549)
T PRK13545 223 EYGDIKEVVDHY 234 (549)
T ss_pred EECCHHHHHhhH
Confidence 999999886543
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=290.07 Aligned_cols=161 Identities=32% Similarity=0.467 Sum_probs=140.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----ccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 35999999999999999999999999999999999999998 999999999876432 2467999999988888
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+|++||+.+
T Consensus 90 ~~t~~~~l~~---------------------------------------------------------------------- 99 (178)
T cd03229 90 HLTVLENIAL---------------------------------------------------------------------- 99 (178)
T ss_pred CCCHHHheee----------------------------------------------------------------------
Confidence 8999887632
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.+++|++++|+
T Consensus 100 ---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~~d~i~~l~ 175 (178)
T cd03229 100 ---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV-THDLDEAARLADRVVVLR 175 (178)
T ss_pred ---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcCEEEEEe
Confidence 0999999999999999999999999999999999999999999999876324555554 566778888999999999
Q ss_pred CCe
Q 001957 400 DGQ 402 (991)
Q Consensus 400 ~G~ 402 (991)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 885
No 300
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.6e-33 Score=317.14 Aligned_cols=188 Identities=30% Similarity=0.360 Sum_probs=158.1
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhh
Q 001957 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE 261 (991)
Q Consensus 183 llGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 261 (991)
|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++.+||+||+.|+.+..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~--- 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR--- 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH---
Confidence 68999999999999999999998 9999999998865432 4679999999999999999999999865432110
Q ss_pred hhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC
Q 001957 262 MLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341 (991)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~ 341 (991)
. +....++++++.+||.+..|. .+..|||||||||+||++|+.+
T Consensus 75 -------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 75 -------A------------------------EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred -------H------------------------HHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhC
Confidence 0 011235668899999876664 4568999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 342 p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv-THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV-THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999876445566555 56677899999999999999999999998874
No 301
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-33 Score=337.89 Aligned_cols=191 Identities=29% Similarity=0.418 Sum_probs=151.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~t 411 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGT 411 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcC
Confidence 4899999999999999999999999999999999999998 9999999999877643 46899999987655 579
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
++|||.++... ...+ ++.+..+..+ .++. .-.|++..||.+|+ ...
T Consensus 412 i~~Ni~~~~~~----~~~~---~i~~a~~~~~------------------------l~~~--i~~lp~Gldt~v~e-~g~ 457 (529)
T TIGR02857 412 IAENIRLARPD----ASDA---EIRRALERAG------------------------LDEF--VAALPQGLDTLIGE-GGA 457 (529)
T ss_pred HHHHHhccCCC----CCHH---HHHHHHHHcC------------------------cHHH--HHhCcccccchhcc-ccc
Confidence 99999986321 0111 1111111110 0111 22456778999986 455
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 799999999999999999999999999999999999999999999864 466777766654 556789999986
No 302
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.3e-33 Score=290.60 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=142.4
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 239 (991)
+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+. .+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 899999999999999999999999999999999999998 9999999998865432 35799999984 5788
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.+..
T Consensus 92 ~~t~~e~l~~~~-------------------------------------------------------------------- 103 (182)
T cd03215 92 DLSVAENIALSS-------------------------------------------------------------------- 103 (182)
T ss_pred CCcHHHHHHHHh--------------------------------------------------------------------
Confidence 899999987631
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++|+
T Consensus 104 ---~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~~d~v~~l~ 178 (182)
T cd03215 104 ---LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLI-SSELDELLGLCDRILVMY 178 (182)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEec
Confidence 0999999999999999999999999999999999999999999999865 45666665 556678999999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9974
No 303
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.5e-33 Score=367.21 Aligned_cols=224 Identities=20% Similarity=0.233 Sum_probs=177.4
Q ss_pred ceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHH
Q 001957 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (991)
Q Consensus 116 ~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL 195 (991)
...|+|+||++.+.. ....||+|||++|+|||.++|+|++|||||||+
T Consensus 1306 ~G~I~f~nVsf~Y~~--------------------------------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl 1353 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYRE--------------------------------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353 (1560)
T ss_pred CCeEEEEEEEEEeCC--------------------------------CCCceeecceEEECCCCEEEEECCCCCCHHHHH
Confidence 357999999998742 112499999999999999999999999999999
Q ss_pred HHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 196 ~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
++|.|+++|+ +|+|++||.++.+... ++.++||||++.+| ..||||||+.... ...+ ++.+..+.
T Consensus 1354 ~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~~-----~sde---eI~~Al~~ 1421 (1560)
T PTZ00243 1354 LTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFLE-----ASSA---EVWAALEL 1421 (1560)
T ss_pred HHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccc-cccHHHHhCcccC-----CCHH---HHHHHHHH
Confidence 9999999998 9999999999987653 57899999987655 5799999965311 1111 11111111
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC-CcEeEEeCCC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP-ALALFMDEIS 351 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~-p~vLllDEPT 351 (991)
.++ ++. +-.|++..||.||+ ....||||||||++|||||+++ |+||+|||||
T Consensus 1422 a~l------------------------~~~--I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEAT 1474 (1560)
T PTZ00243 1422 VGL------------------------RER--VASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEAT 1474 (1560)
T ss_pred CCC------------------------hHH--HhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 111 111 23467789999996 4456999999999999999995 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 352 sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+||+.+...|.+.|++.. .++|+|+..|. .++...||+|++|++|+|+++|+++++++
T Consensus 1475 SaLD~~te~~Iq~~L~~~~--~~~TvI~IAHR--l~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1475 ANIDPALDRQIQATVMSAF--SAYTVITIAHR--LHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHC--CCCEEEEEecc--HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999853 35666665443 36778899999999999999999999863
No 304
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.5e-33 Score=293.07 Aligned_cols=183 Identities=22% Similarity=0.302 Sum_probs=147.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~t 97 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GT 97 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-cc
Confidence 4899999999999999999999999999999999999998 999999999875432 2357999999886665 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+... . .. + .+.+.++ + +..+.
T Consensus 98 v~~~l~~~~~---~--~~---------~---------------------------~~~~~l~---~---------~~~~~ 124 (207)
T cd03369 98 IRSNLDPFDE---Y--SD---------E---------------------------EIYGALR---V---------SEGGL 124 (207)
T ss_pred HHHHhcccCC---C--CH---------H---------------------------HHHHHhh---c---------cCCCC
Confidence 9999975310 0 00 0 0111222 1 23457
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++++|||||+|||+.+...+++.|+++. .+.|+|++. |...++.. +|++++|++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~t-h~~~~~~~-~d~v~~l~~g~ 200 (207)
T cd03369 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIA-HRLRTIID-YDKILVMDAGE 200 (207)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEe-CCHHHHhh-CCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999873 356666655 45556655 99999999999
Q ss_pred EEEecCH
Q 001957 403 IVYQGPR 409 (991)
Q Consensus 403 iv~~G~~ 409 (991)
++.+|++
T Consensus 201 i~~~g~~ 207 (207)
T cd03369 201 VKEYDHP 207 (207)
T ss_pred EEecCCC
Confidence 9988863
No 305
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.7e-33 Score=294.67 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=157.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-YNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
++|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|. ++|..+ .+.|+..+++.+||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL----------PLGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee----------ccccccccCCcCcHH
Confidence 3799999999999999999999999999999999999998 99997 777532 123455678899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+.....+.... ...+.+++.++|+...|+.+ +.|
T Consensus 68 enl~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~-----~~l 105 (213)
T PRK15177 68 ENARMMASLYGLDGD-------------------------------------EFSHFCYQLTQLEQCYTDRV-----SEY 105 (213)
T ss_pred HHHHHHHHHcCCCHH-------------------------------------HHHHHHHHHhChhHHhhchH-----hhc
Confidence 999987654322100 00112344567777766555 579
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+++|++|+.+|++++|||||++||+.++..+.+.|.+..+ +.++| .++|...++..+||++++|++|+++
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii-~vsH~~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLI-VLTHNPRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEE-EEECCHHHHHHhcCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999998865443 34544 4567777888999999999999999
Q ss_pred EecCHHHHHHHHHh
Q 001957 405 YQGPRELVLEFFAS 418 (991)
Q Consensus 405 ~~G~~~~~~~~f~~ 418 (991)
+.|+.+++..+++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (213)
T PRK15177 183 MCEDLAQATALFEQ 196 (213)
T ss_pred EeCCHHHHHHHHHH
Confidence 99999999877653
No 306
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.4e-33 Score=297.70 Aligned_cols=194 Identities=23% Similarity=0.402 Sum_probs=151.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++ .|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 103 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RS 103 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hh
Confidence 5999999999999999999999999999999999999998 999999998875432 2357899999876654 69
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCcc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (991)
|+||+.++..... . .++.+... ...++.+++.+ |+.+..+ ..
T Consensus 104 v~~nl~~~~~~~~----~---~~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~-----~~ 147 (226)
T cd03248 104 LQDNIAYGLQSCS----F---ECVKEAAQ------------------------KAHAHSFISELASGYDTEVG-----EK 147 (226)
T ss_pred HHHHhccccCCCC----H---HHHHHHHH------------------------HcCcHHHHHhccccccchhh-----cC
Confidence 9999987643110 0 01110000 01134566777 6665444 34
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++| ...++. .+|+|++|++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh-~~~~~~-~~d~i~~l~~ 223 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAH-RLSTVE-RADQILVLDG 223 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEC-CHHHHH-hCCEEEEecC
Confidence 578999999999999999999999999999999999999999999999753 456666554 555665 5999999999
Q ss_pred CeE
Q 001957 401 GQI 403 (991)
Q Consensus 401 G~i 403 (991)
|++
T Consensus 224 g~i 226 (226)
T cd03248 224 GRI 226 (226)
T ss_pred CcC
Confidence 974
No 307
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=333.44 Aligned_cols=209 Identities=19% Similarity=0.325 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecC---CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQH---DNHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~---d~~~ 238 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+ ..++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF 353 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence 4899999999999999999999999999999999999998 9999999998754321 3568999997 4578
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+||+.+.......+... ......+. .....++++++.+||. +..++.+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 407 (510)
T PRK09700 354 PNFSIAQNMAISRSLKDGGYKG-AMGLFHEV------------------------DEQRTAENQRELLALKCHSVNQNI- 407 (510)
T ss_pred CCCcHHHHhccccccccccccc-cccccChH------------------------HHHHHHHHHHHhcCCCCCCccCcc-
Confidence 8999999998764321000000 00000000 0012346688999996 6666554
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|+ ++|+.+++.++||++++
T Consensus 408 ----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~-vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 408 ----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILM-VSSELPEIITVCDRIAV 481 (510)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHhhCCEEEE
Confidence 57999999999999999999999999999999999999999999999875 4556555 56677899999999999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|++++.++.
T Consensus 482 l~~G~i~~~~~~ 493 (510)
T PRK09700 482 FCEGRLTQILTN 493 (510)
T ss_pred EECCEEEEEecC
Confidence 999999998865
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4e-33 Score=298.09 Aligned_cols=198 Identities=25% Similarity=0.356 Sum_probs=157.5
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCHHHHHHHH
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFS 250 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~ 250 (991)
++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.. .++.++|++|++.++ +.+||.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhc
Confidence 468899999999999999999999999999998 9999999987643 246799999987653 358999999886
Q ss_pred HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhH
Q 001957 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (991)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (991)
.... .+. .. .+. ......++++++.+||.+..++. +..|||||||
T Consensus 76 ~~~~-~~~-~~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 120 (223)
T TIGR03771 76 RTGH-IGW-LR----------------RPC------------VADFAAVRDALRRVGLTELADRP-----VGELSGGQRQ 120 (223)
T ss_pred cccc-ccc-cc----------------CCc------------HHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHH
Confidence 3211 000 00 000 00012345678899998766654 4579999999
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHH
Q 001957 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE 410 (991)
Q Consensus 331 Rvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~ 410 (991)
||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|++++| +|++++.|+.+
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~-sH~~~~~~~~~d~i~~l-~G~i~~~~~~~ 197 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMT-THDLAQAMATCDRVVLL-NGRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEE-CCEEEeecCHH
Confidence 99999999999999999999999999999999999999864 45566665 45666899999999999 89999999988
Q ss_pred HHH
Q 001957 411 LVL 413 (991)
Q Consensus 411 ~~~ 413 (991)
++.
T Consensus 198 ~~~ 200 (223)
T TIGR03771 198 QLQ 200 (223)
T ss_pred Hhc
Confidence 764
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.7e-33 Score=285.23 Aligned_cols=155 Identities=28% Similarity=0.488 Sum_probs=134.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+++|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GS 91 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCcccc-Cc
Confidence 4999999999999999999999999999999999999998 9999999998765432 467899999876555 47
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+
T Consensus 92 v~~~l--------------------------------------------------------------------------- 96 (173)
T cd03246 92 IAENI--------------------------------------------------------------------------- 96 (173)
T ss_pred HHHHC---------------------------------------------------------------------------
Confidence 65431
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ .+.+ +.+|++++|++|+
T Consensus 97 -LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~-~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 97 -LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHR-PETL-ASADRILVLEDGR 172 (173)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHH-HhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999865 46676666554 4555 6899999999997
Q ss_pred E
Q 001957 403 I 403 (991)
Q Consensus 403 i 403 (991)
+
T Consensus 173 i 173 (173)
T cd03246 173 V 173 (173)
T ss_pred C
Confidence 4
No 310
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=332.16 Aligned_cols=207 Identities=17% Similarity=0.277 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCeeCCCccc----cceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~ 236 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++ |+ +|+|.++|+++..... ++.++|++|+. .
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 351 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDG 351 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCC
Confidence 469999999999999999999999999999999999998 47 9999999998753321 34689999984 4
Q ss_pred CCCCCCHHHHHHHHHH--hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccc
Q 001957 237 HIGEMTVRETLAFSAR--CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCAD 313 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (991)
+++.+||.||+.+... ..+.+. ..+ .+....++.+++.++|. +..|
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~ 400 (506)
T PRK13549 352 IVPVMGVGKNITLAALDRFTGGSR-------IDD------------------------AAELKTILESIQRLKVKTASPE 400 (506)
T ss_pred CcCCCCHHHHhhhhhhhhhccCcc-------cCh------------------------HHHHHHHHHHHHhcCccCCCcc
Confidence 7788999999987632 100000 000 00112356789999996 4566
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|+| .++|+..++.++||
T Consensus 401 ~~-----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi-~~sHd~~~~~~~~d 473 (506)
T PRK13549 401 LA-----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAII-VISSELPEVLGLSD 473 (506)
T ss_pred cc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHhCC
Confidence 54 458999999999999999999999999999999999999999999999875 455544 55677889999999
Q ss_pred eEEEecCCeEEEecCHHHH
Q 001957 394 DIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~ 412 (991)
++++|++|+++..|+.+++
T Consensus 474 ~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 474 RVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEEEECCEEEEEeccccC
Confidence 9999999999999987654
No 311
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.9e-33 Score=286.44 Aligned_cols=161 Identities=29% Similarity=0.471 Sum_probs=138.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.+||.++... ..++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 4899999999999999999999999999999999999998 99999999976532 12467899999876654 688
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+ +..
T Consensus 92 ~~~i-------------------------------------------------------------------------~~~ 98 (178)
T cd03247 92 RNNL-------------------------------------------------------------------------GRR 98 (178)
T ss_pred HHhh-------------------------------------------------------------------------ccc
Confidence 7765 125
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||++||++++.+|++|+|||||+|||..++..+++.|+++. .+.|+|++.| ..+++ ..+|++++|++|++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh-~~~~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITH-HLTGI-EHMDKILFLENGKI 174 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEec-CHHHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999874 3566666655 45566 46999999999999
Q ss_pred EEec
Q 001957 404 VYQG 407 (991)
Q Consensus 404 v~~G 407 (991)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8765
No 312
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-32 Score=289.32 Aligned_cols=182 Identities=21% Similarity=0.281 Sum_probs=147.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 35999999999999999999999999999999999999998 99999999987532 12467999999888888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.+...... . ...++++++.+++.+..|..+ .
T Consensus 91 v~~~~~~~~~~~~---~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 126 (200)
T PRK13540 91 LRENCLYDIHFSP---G------------------------------------AVGITELCRLFSLEHLIDYPC-----G 126 (200)
T ss_pred HHHHHHHHHhcCc---c------------------------------------hHHHHHHHHHcCCchhhhCCh-----h
Confidence 9999998642100 0 012356788889876665444 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.||||||||++||++++.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++ +..+.+|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~~ 197 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYEE 197 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchhh
Confidence 7999999999999999999999999999999999999999999999754 466777765543 3335566543
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-32 Score=299.84 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=148.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|. +|+|.++| .++|++|+..+++ .||+|
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----------~i~yv~q~~~l~~-~tv~e 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----------RISFSSQFSWIMP-GTIKE 116 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC----------EEEEEeCcccccc-cCHHH
Confidence 3899999999999999999999999999999999999998 99999998 3899999877666 59999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..... .. ......+.. ..+..++. +....++.++ ..+..||
T Consensus 117 nl~~~~~~~----~~----~~~~~l~~~------------------------~l~~~l~~--~~~~~~~~~~-~~~~~LS 161 (282)
T cd03291 117 NIIFGVSYD----EY----RYKSVVKAC------------------------QLEEDITK--FPEKDNTVLG-EGGITLS 161 (282)
T ss_pred HhhcccccC----HH----HHHHHHHHh------------------------CCHHHHHh--ccccccceec-CCCCcCC
Confidence 998753210 00 000000000 00112222 2223344443 3457899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.+ +++. .+.|+|++.| +..++ ..+|++++|++|+++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH-~~~~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTS-KMEHL-KKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeC-ChHHH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999998865 4543 3566666554 55555 579999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 238 ~~g~~~~~~ 246 (282)
T cd03291 238 FYGTFSELQ 246 (282)
T ss_pred EECCHHHHH
Confidence 999998775
No 314
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-33 Score=331.42 Aligned_cols=209 Identities=20% Similarity=0.343 Sum_probs=167.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|+. .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 4899999999999999999999999999999999999998 9999999998753211 35689999985 488
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||.||+.++.......... . .... .....++++++.+||. +..|+.+
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~--~--~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 394 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGC--L--INNR------------------------WEAENADRFIRSLNIKTPSREQLI- 394 (501)
T ss_pred CCCCHHHHhccccchhhccccc--c--cChH------------------------HHHHHHHHHHHhcCcccCCccCcc-
Confidence 8999999998754211000000 0 0000 0012346689999994 5666655
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++++ .+.|+|+ ++|+..++.++||++++
T Consensus 395 ----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-vsHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 395 ----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLF-VSSDLPEVLGVADRIVV 468 (501)
T ss_pred ----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHhhCCEEEE
Confidence 57999999999999999999999999999999999999999999999875 4566555 56778899999999999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|++++.
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987653
No 315
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8e-33 Score=330.08 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=167.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+. .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 3699999999999999999999999999999999999998 9999999998764322 34699999985 578
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccccccc
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVG 317 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (991)
+.+||+||+.+..... ....... ... .+....++++++.+||. +..|+.
T Consensus 343 ~~~tv~e~l~~~~~~~-~~~~~~~---~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 392 (501)
T PRK10762 343 LGMSVKENMSLTALRY-FSRAGGS---LKH------------------------ADEQQAVSDFIRLFNIKTPSMEQA-- 392 (501)
T ss_pred CCCcHHHHhhhhhhhh-hcccccc---cCH------------------------HHHHHHHHHHHHhcCCCCCCccCc--
Confidence 8999999998753210 0000000 000 00112356789999995 556654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+ ++|+..++.++||+|++
T Consensus 393 ---~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii-vtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 393 ---IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIIL-VSSEMPEVLGMSDRILV 467 (501)
T ss_pred ---hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHhhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 4555555 55677899999999999
Q ss_pred ecCCeEEEecCHHHH
Q 001957 398 LSDGQIVYQGPRELV 412 (991)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (991)
|++|++++.|+++++
T Consensus 468 l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 468 MHEGRISGEFTREQA 482 (501)
T ss_pred EECCEEEEEeccccC
Confidence 999999999987765
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=297.10 Aligned_cols=210 Identities=26% Similarity=0.378 Sum_probs=180.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCC-
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD- 235 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d- 235 (991)
....++++||+++++||.++|+|.||||||||-.+|.+++++ +|+|.++|++++.+.. ++.+-.|+|++
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCC
Confidence 456799999999999999999999999999999999999987 7999999999975432 46788999986
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
.+-|.|||.+-+.-+.+.+.+... +. +....+.+.|+..||+...
T Consensus 374 gSLsPRmtV~qII~EGL~vh~~~ls--------~~------------------------eR~~rv~~aL~EVGLDp~~-- 419 (534)
T COG4172 374 GSLSPRMTVGQIIEEGLRVHEPKLS--------AA------------------------ERDQRVIEALEEVGLDPAT-- 419 (534)
T ss_pred CCCCcccCHHHHhhhhhhhcCCCCC--------HH------------------------HHHHHHHHHHHHcCCChhH--
Confidence 578999999999999887754321 11 1223456689999997532
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
-++++++.|||||||++||||++.+|++++||||||+||-+-..+|++.|+++-++. +-.-+.|+|+..-+-.+||+
T Consensus 420 --r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~ 496 (534)
T COG4172 420 --RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHR 496 (534)
T ss_pred --hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhce
Confidence 257899999999999999999999999999999999999999999999999997654 45555678899999999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|+||.+|+||++|+.+++.
T Consensus 497 viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 497 VIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999884
No 317
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=315.59 Aligned_cols=207 Identities=26% Similarity=0.380 Sum_probs=174.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (991)
+..++|+||||.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..++ .-++.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4467999999999999999999999999999999999999999 99999999998755543 5689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
|+|||.|||.++........ .+ | ..+.......+|+.+|+....|+.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g---~i----------------d-----------~~~m~~~A~~~l~~lg~~~~~~~~v~- 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFG---LI----------------D-----------RKAMRRRARELLARLGLDIDPDTLVG- 144 (500)
T ss_pred CCccHHHHhhcccccccCCC---cc----------------C-----------HHHHHHHHHHHHHHcCCCCChhhhhh-
Confidence 99999999998765332100 00 0 00112235668999999655777776
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||+||||-|.||+||..++++|+|||||+.|+...+..+.+.++++.. .+..|+.|+|..+|++++||+|.||
T Consensus 145 ----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 145 ----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 6999999999999999999999999999999999999999999999864 4566666788999999999999999
Q ss_pred cCCeEEEecCH
Q 001957 399 SDGQIVYQGPR 409 (991)
Q Consensus 399 ~~G~iv~~G~~ 409 (991)
.+|++|..++.
T Consensus 219 RDG~~v~~~~~ 229 (500)
T COG1129 219 RDGRVVGTRPT 229 (500)
T ss_pred eCCEEeeeccc
Confidence 99999998873
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.3e-32 Score=329.59 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=151.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++.+... ++.++||+|+.. +++.|
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-lf~~t 412 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFH-LFDQL 412 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChh-HHHHh
Confidence 4899999999999999999999999999999999999998 9999999999876543 468999999654 55568
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc--c
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE--M 320 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~--~ 320 (991)
++|| + .... +..+++.++.+++....+ .++. .
T Consensus 413 i~~n---~-----~~~~------------------------------------~~~~~~~~~~~~l~~~~~--~~~~~~~ 446 (547)
T PRK10522 413 LGPE---G-----KPAN------------------------------------PALVEKWLERLKMAHKLE--LEDGRIS 446 (547)
T ss_pred hccc---c-----CchH------------------------------------HHHHHHHHHHcCCchhhh--ccccCCC
Confidence 8776 1 0000 001234566677764332 2221 1
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
...||||||||++|||+++++|++|+|||||++||+.++..+.+.|.+..+..++|+|+..|++ +....+|+|++|++
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~ 524 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999875443467877777664 66789999999999
Q ss_pred CeEEEe
Q 001957 401 GQIVYQ 406 (991)
Q Consensus 401 G~iv~~ 406 (991)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999876
No 319
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=290.00 Aligned_cols=215 Identities=26% Similarity=0.344 Sum_probs=175.3
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEe-cCCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYIS-QHDN 236 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~-Q~d~ 236 (991)
.+++...+.+||||.|++|++++++|||||||||+||+|+|++.|+ +|.|.+||++.-... .-+.+++|+ |.-.
T Consensus 32 ~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred chhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 3444567999999999999999999999999999999999999998 999999998653211 125677775 5555
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.-.+.+.|++........++. .+-....+.+.++|+|+...+..
T Consensus 109 l~Wdlp~~ds~~v~~~Iy~Ipd----------------------------------~~F~~r~~~l~eiLdl~~~lk~~- 153 (325)
T COG4586 109 LWWDLPALDSLEVLKLIYEIPD----------------------------------DEFAERLDFLTEILDLEGFLKWP- 153 (325)
T ss_pred eeeechhhhhHHHHHHHHhCCH----------------------------------HHHHHHHHHHHHHhcchhhhhhh-
Confidence 6666778888776544332211 11223456778899998776654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+|.||-|||.|+.+|.+|+++|+||||||||-|||..++..|.+.|++.....+.|++. .+|....+..+||+|+
T Consensus 154 ----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll-TTH~~~di~~lc~rv~ 228 (325)
T COG4586 154 ----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL-TTHIFDDIATLCDRVL 228 (325)
T ss_pred ----hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE-EecchhhHHHhhhheE
Confidence 47899999999999999999999999999999999999999999999998766655555 4678999999999999
Q ss_pred EecCCeEEEecCHHHHHHHHH
Q 001957 397 LLSDGQIVYQGPRELVLEFFA 417 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~ 417 (991)
+|+.|+++|.|+.+++.+-|.
T Consensus 229 ~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 229 LIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EeeCCcEeecccHHHHHHHhC
Confidence 999999999999999987664
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-32 Score=276.76 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=177.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (991)
+.||++||++|++||+.+||||||||||||.++|+|.-.- --++|+|+++|+++.++.+. .-+..-+|.+.-+|-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 4699999999999999999999999999999999998431 12389999999999887663 345567899999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~ 319 (991)
.|+.+.|..+.+.+.... + . .. +....+++.++.++++. .++..|.
T Consensus 96 V~~~~fLr~a~n~~~~~~---------------~----~-~~-----------~~~~~~~e~~~~l~~~~~~l~R~vN-- 142 (251)
T COG0396 96 VTNSDFLRAAMNARRGAR---------------G----I-LP-----------EFIKELKEKAELLGLDEEFLERYVN-- 142 (251)
T ss_pred eeHHHHHHHHHHhhhccc---------------c----c-cH-----------HHHHHHHHHHHHcCCCHHHhhcccC--
Confidence 999999998765421100 0 0 00 11223566788999987 5565554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc--CeEEE
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF--DDIIL 397 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf--D~vil 397 (991)
-|+|||||||.-|+.+++.+|++.+||||-||||..+-..|-+.++.+.. .+..+++.+|+ ..+.++. |+|.+
T Consensus 143 --~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy--~rll~~i~pD~vhv 217 (251)
T COG0396 143 --EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHY--QRLLDYIKPDKVHV 217 (251)
T ss_pred --CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecH--HHHHhhcCCCEEEE
Confidence 48999999999999999999999999999999999999999999999865 45566555544 4667766 99999
Q ss_pred ecCCeEEEecCHHHHHHHHHhcCCCC
Q 001957 398 LSDGQIVYQGPRELVLEFFASMGFRC 423 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~ 423 (991)
|.+|+||..|.+ ++..+++..||.|
T Consensus 218 l~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 218 LYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999 8889999989865
No 321
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-32 Score=357.43 Aligned_cols=222 Identities=21% Similarity=0.208 Sum_probs=174.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
.+|+|+||++.+.. ....+|+|||++|+|||.++|+|+||||||||++
T Consensus 1216 g~I~f~nVs~~Y~~--------------------------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE--------------------------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred CeEEEEEEEEEeCC--------------------------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 57999999999842 1134999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHc
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (991)
+|.|+++ . +|+|++||.++.+... ++.++||||++.+|. .||||||+.... ...+.+.+
T Consensus 1264 lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~~-----~tdeei~~-------- 1325 (1490)
T TIGR01271 1264 ALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYEQ-----WSDEEIWK-------- 1325 (1490)
T ss_pred HHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCc-cCHHHHhCcccC-----CCHHHHHH--------
Confidence 9999986 5 8999999999987653 478999999776665 699999965321 01111111
Q ss_pred CCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCC
Q 001957 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (991)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsG 353 (991)
+....+. +.. +..++...||.||+ ....||||||||++|||||+++|+||+|||||++
T Consensus 1326 -------------aL~~~~L------~~~--i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~ 1383 (1490)
T TIGR01271 1326 -------------VAEEVGL------KSV--IEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAH 1383 (1490)
T ss_pred -------------HHHHCCC------HHH--HHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 1110000 011 12356678999986 4557999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
||..+...|.+.|++.. .++|+|+.. |.. ++...||+|++|++|+|++.|+++++++
T Consensus 1384 lD~~Te~~I~~~L~~~~--~~~TvI~Ia-HRl-~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1384 LDPVTLQIIRKTLKQSF--SNCTVILSE-HRV-EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCHHHHHHHHHHHHHHc--CCCEEEEEe-cCH-HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999863 355666554 433 6677799999999999999999999863
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6e-32 Score=292.75 Aligned_cols=190 Identities=24% Similarity=0.253 Sum_probs=151.8
Q ss_pred eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 167 ILKDVSGVIK-----PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 167 iL~~vs~~i~-----~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.|+|+++.++ +|++++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc---------eEEEecccccCCCCC
Confidence 5667777665 79999999999999999999999999998 999999984 589999987777889
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|++.+.....+. .....+++++.+||++..|+.+
T Consensus 77 tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~l~l~~~~~~~~----- 113 (246)
T cd03237 77 TVRDLLSSITKDFYT--------------------------------------HPYFKTEIAKPLQIEQILDREV----- 113 (246)
T ss_pred CHHHHHHHHhhhccc--------------------------------------cHHHHHHHHHHcCCHHHhhCCh-----
Confidence 999999764321100 0001245678899987666544
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++++..+.|+|+ ++|+..++..+||+|++|+++
T Consensus 114 ~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-vsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV-VEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999987644555555 566777888999999999765
Q ss_pred eEE--EecCHHHH
Q 001957 402 QIV--YQGPRELV 412 (991)
Q Consensus 402 ~iv--~~G~~~~~ 412 (991)
..+ ..+++..+
T Consensus 193 ~~~~~~~~~~~~~ 205 (246)
T cd03237 193 PSVNGVANPPQSL 205 (246)
T ss_pred CeeEEEeCCchHH
Confidence 443 33444443
No 323
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-33 Score=268.76 Aligned_cols=196 Identities=26% Similarity=0.414 Sum_probs=166.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIG 239 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (991)
....||+++|+.+.+||..+|.||||||||||||+++.+.+|+ +|++++.|++++...+ +..++||.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3456999999999999999999999999999999999999999 9999999999987765 468999999998887
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
. ||++||.|.-+.+.. +| |.++ .-..|+.++|++..= +.
T Consensus 91 ~-tVeDNlifP~~~r~r-------------------r~--dr~a---------------a~~llar~~l~~~~L----~k 129 (223)
T COG4619 91 D-TVEDNLIFPWQIRNR-------------------RP--DRAA---------------ALDLLARFALPDSIL----TK 129 (223)
T ss_pred c-chhhccccchHHhcc-------------------CC--ChHH---------------HHHHHHHcCCchhhh----cc
Confidence 5 999999998765421 11 2221 223678888876432 24
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..||||||||++++|-|.--|+||+||||||+||..++..|-+.|.++.+.+ ...++-++|+..+..+.||+++-+.
T Consensus 130 ~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q-~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ-NVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhh-ceEEEEEecChHHHhhhhheEEEec
Confidence 456899999999999999999999999999999999999999999999998744 4566667788889999999999999
Q ss_pred CCeE
Q 001957 400 DGQI 403 (991)
Q Consensus 400 ~G~i 403 (991)
.|++
T Consensus 209 ~G~~ 212 (223)
T COG4619 209 PGHA 212 (223)
T ss_pred cCcc
Confidence 9876
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.2e-32 Score=282.71 Aligned_cols=166 Identities=36% Similarity=0.558 Sum_probs=137.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 35999999999999999999999999999999999999998 9999999998754322 234566666
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
+++.+||.+..++ .+
T Consensus 81 ------------------------------------------------------------~l~~~gl~~~~~~-----~~ 95 (180)
T cd03214 81 ------------------------------------------------------------ALELLGLAHLADR-----PF 95 (180)
T ss_pred ------------------------------------------------------------HHHHcCCHhHhcC-----Cc
Confidence 1234455433333 34
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|+|++ +|...++.+++|++++|++|
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~-sh~~~~~~~~~d~~~~l~~g 174 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV-LHDLNLAARYADRVILLKDG 174 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999865325566655 55666888999999999999
Q ss_pred eEEEec
Q 001957 402 QIVYQG 407 (991)
Q Consensus 402 ~iv~~G 407 (991)
++++.|
T Consensus 175 ~i~~~~ 180 (180)
T cd03214 175 RIVAQG 180 (180)
T ss_pred EEEecC
Confidence 998764
No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-32 Score=326.05 Aligned_cols=207 Identities=18% Similarity=0.253 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCCccc----cceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~ 236 (991)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++|++|+. .
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 4699999999999999999999999999999999999985 7 8999999998753221 35689999984 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-ccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (991)
+++.+||+||+.++..-..... . .... ......++.+++.++|.+ ..|+.
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~-~----~~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFK-M----RIDA------------------------AAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccC-C----cCCH------------------------HHHHHHHHHHHHhcCccCCCccCc
Confidence 7889999999988642000000 0 0000 001123567889999964 45554
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|+ ++|+.+++.++||++
T Consensus 401 ~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii-vsHd~~~~~~~~d~v 473 (500)
T TIGR02633 401 I-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIV-VSSELAEVLGLSDRV 473 (500)
T ss_pred c-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEE
Confidence 4 57999999999999999999999999999999999999999999999875 4556544 567788999999999
Q ss_pred EEecCCeEEEecCHH
Q 001957 396 ILLSDGQIVYQGPRE 410 (991)
Q Consensus 396 ilL~~G~iv~~G~~~ 410 (991)
++|++|+++..++.+
T Consensus 474 ~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 474 LVIGEGKLKGDFVNH 488 (500)
T ss_pred EEEECCEEEEEEccc
Confidence 999999999877654
No 326
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.1e-32 Score=290.26 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=144.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 46999999999999999999999999999999999999988 999999998775421 13568999998876
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-------
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV------- 310 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~------- 310 (991)
+ ..||+||+.+..... . + + ..++++.++|.+
T Consensus 91 ~-~~t~~~nl~~~~~~~----~-~---~---------------------------------~~~~~~~~~l~~~~~~~~~ 128 (218)
T cd03290 91 L-NATVEENITFGSPFN----K-Q---R---------------------------------YKAVTDACSLQPDIDLLPF 128 (218)
T ss_pred c-cccHHHHHhhcCcCC----H-H---H---------------------------------HHHHHHHhCcHHHHHhCcC
Confidence 6 689999998753210 0 0 0 001122222221
Q ss_pred cccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHhhccCceEEEEEecCCchh
Q 001957 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN--CLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~--~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
..++..+ ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ .++.+ +..+.|+|++.|+ ...+
T Consensus 129 ~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~-~~~~ 205 (218)
T cd03290 129 GDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHK-LQYL 205 (218)
T ss_pred ccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCC-hHHH
Confidence 1223332 3467899999999999999999999999999999999999999998 55554 3346676666555 4455
Q ss_pred HhhcCeEEEecCCe
Q 001957 389 YDLFDDIILLSDGQ 402 (991)
Q Consensus 389 ~~lfD~vilL~~G~ 402 (991)
..+|++++|++|.
T Consensus 206 -~~~d~i~~l~~G~ 218 (218)
T cd03290 206 -PHADWIIAMKDGS 218 (218)
T ss_pred -hhCCEEEEecCCC
Confidence 5799999999884
No 327
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.8e-32 Score=325.77 Aligned_cols=205 Identities=17% Similarity=0.258 Sum_probs=165.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 239 (991)
+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+. .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999999998 9999999998764322 24689999973 4788
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (991)
.+||.|++.+.......... . .. .....++++++.+||+ +..|+.+
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~----~--~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 401 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWI----K--PA-------------------------RENAVLERYRRALNIKFNHAEQAA-- 401 (510)
T ss_pred CCcHHHHHHhhhhhhhcccc----C--hH-------------------------HHHHHHHHHHHHcCCCCCCccCcc--
Confidence 89999999643110000000 0 00 0012356789999996 5666554
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+| .++|+..++.++||++++|
T Consensus 402 ---~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiI-ivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 402 ---RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVL-FISSDLEEIEQMADRVLVM 476 (510)
T ss_pred ---ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEE-EECCCHHHHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999876 455544 4567788999999999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
++|++++.|.++++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (510)
T PRK15439 477 HQGEISGALTGAAI 490 (510)
T ss_pred ECCEEEEEEccccC
Confidence 99999999877654
No 328
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-32 Score=286.45 Aligned_cols=185 Identities=29% Similarity=0.376 Sum_probs=139.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|+..++ .+||+|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 5999999999999999999999999999999999999998 99999998 589999987765 679999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.+..... .+ +..+..+.. .....+..+ +...++.+. .....||
T Consensus 85 nl~~~~~~~-----~~---~~~~~~~~~------------------------~l~~~~~~~--~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 85 NILFGKPFD-----EE---RYEKVIKAC------------------------ALEPDLEIL--PDGDLTEIG-EKGINLS 129 (204)
T ss_pred HhccCCCcC-----HH---HHHHHHHHc------------------------CcHHHHHhc--cCcccceec-CCCCcCC
Confidence 998853210 00 000000000 001112221 122334433 3467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
||||||++||++|+.+|++++|||||+|||+.++..+.+. +++..+ .+.|+|++.|+ ...+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~-~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQ-LQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCC-HHHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999984 566544 35666666555 456666 99999999985
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=271.37 Aligned_cols=212 Identities=24% Similarity=0.378 Sum_probs=179.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-eeCCCccc----cceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG-HDMDEFVP----QRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG-~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (991)
..+|+|+||++.|||+-+|+|||||||||+|++|+|+.+|+ +|+|.++| .++..... +.-+|-=+|.+..|.
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 45899999999999999999999999999999999999998 99999999 77766543 245778899999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+|||+.+.+.... ....+..+. ..+....+|++|...||.+.+|..-+
T Consensus 95 ~ltV~eNLelA~~~~k~-----v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 95 NLTVRENLELALNRDKS-----VFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccHHHHHHHHhcCCcc-----hHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 99999999998653211 111111111 01123467899999999998886554
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||.||||++.||+.++++|++|++|||++|+--..+.+.-+.|+.++. +..|+.+.|++..+.+++|+|.+|+
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~---~hsilVVEHDM~Fvr~~A~~VTVlh 220 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG---KHSILVVEHDMGFVREIADKVTVLH 220 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc---CceEEEEeccHHHHHHhhheeEEEe
Confidence 6999999999999999999999999999999999999999999999863 5667778999999999999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|.+...|+.+++.
T Consensus 221 ~G~VL~EGsld~v~ 234 (249)
T COG4674 221 EGSVLAEGSLDEVQ 234 (249)
T ss_pred ccceeecccHHHhh
Confidence 99999999998874
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.3e-31 Score=280.42 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=143.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+++ +|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ++.++|++|+...++.+||+||
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHH
Confidence 555 99999999999999999999999999999999998 999999999876532 3568999998888889999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+.....+. ...++.+++.++|++..+.. ++.|||
T Consensus 91 l~~~~~~~~~---------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 126 (195)
T PRK13541 91 LKFWSEIYNS---------------------------------------AETLYAAIHYFKLHDLLDEK-----CYSLSS 126 (195)
T ss_pred HHHHHHhccc---------------------------------------HHHHHHHHHHcCCHhhhccC-----hhhCCH
Confidence 9885432100 01234567888887666544 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|||||++||++++.+|++|+|||||+|||+.++..+.+.|++..+ .+.|+|++.|+ ..++. .+|-|
T Consensus 127 G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~-~~~i~-~~~~~ 192 (195)
T PRK13541 127 GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHL-ESSIK-SAQIL 192 (195)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-ccccc-hhhee
Confidence 999999999999999999999999999999999999999987543 56676666554 43433 36654
No 331
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=326.89 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++|++|+..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 45999999999999999999999999999999999999998 9999999999875432 3578999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+|+.||+.+.....+... . +....+.++++.+||.+..|+..
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~lgl~~~~~~~~- 142 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYAGLER----------K------------------------QRLLRAQELLQRLGLEDRVEYQP- 142 (648)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhhhcCCc-
Confidence 899999999998654322100 0 01123456788999987766554
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..||||||||+.||++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++.|++ +.+ +.||++++
T Consensus 143 ----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~ 215 (648)
T PRK10535 143 ----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIE 215 (648)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEE
Confidence 58999999999999999999999999999999999999999999999764 467777766554 444 57999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|+++++|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999988764
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=1.6e-31 Score=271.70 Aligned_cols=145 Identities=23% Similarity=0.391 Sum_probs=123.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (991)
++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~---------- 80 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMV---------- 80 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEE----------
Confidence 5999999999999999999999999999999999999998 9999999987653210 0011111
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
T Consensus 81 -------------------------------------------------------------------------------- 80 (163)
T cd03216 81 -------------------------------------------------------------------------------- 80 (163)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+||||||||+++|++|+.+|++|+|||||+|||..++..+.+.|+++.+ .+.|+|++ +|..+++.+.+|++++|++|
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFI-SHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 12999999999999999999999999999999999999999999999864 45566655 56667888999999999999
Q ss_pred eEEE
Q 001957 402 QIVY 405 (991)
Q Consensus 402 ~iv~ 405 (991)
++++
T Consensus 159 ~i~~ 162 (163)
T cd03216 159 RVVG 162 (163)
T ss_pred EEEe
Confidence 9975
No 333
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.98 E-value=1.5e-31 Score=272.86 Aligned_cols=150 Identities=26% Similarity=0.386 Sum_probs=131.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.++|++|+..+ +.+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~q~~~~-~~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG--------EDLLFLPQRPYL-PLGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC--------ceEEEECCCCcc-ccccHH
Confidence 35999999999999999999999999999999999999998 999999873 578999998654 578999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.+. ....|
T Consensus 82 ~nl~~~---------------------------------------------------------------------~~~~L 92 (166)
T cd03223 82 EQLIYP---------------------------------------------------------------------WDDVL 92 (166)
T ss_pred HHhhcc---------------------------------------------------------------------CCCCC
Confidence 998642 02479
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
|||||||++||++|+.+|++++|||||+|||..++..+.+.|+++ +.|+|++.|++ . ....+|++++|++|
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-S-LWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999874 46777776664 3 45799999999865
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.5e-31 Score=274.26 Aligned_cols=153 Identities=35% Similarity=0.549 Sum_probs=130.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 5999999999999999999999999999999999999998 9999999998754322 356899999865443 45
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||+
T Consensus 92 ~~e~l--------------------------------------------------------------------------- 96 (171)
T cd03228 92 IRENI--------------------------------------------------------------------------- 96 (171)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 54321
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++ +|..+++.. ||++++|++|+
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~~~tii~~-sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVI-AHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc--CCCEEEEE-ecCHHHHHh-CCEEEEEcCCC
Confidence 89999999999999999999999999999999999999999999974 35565655 555667766 99999999885
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.3e-32 Score=278.75 Aligned_cols=208 Identities=29% Similarity=0.417 Sum_probs=169.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----ccccceEEEEe--cCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYIS--QHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~~~~~~~~yv~--Q~d~~ 237 (991)
.+.||+|+|.+|+|||-.+|+|||||||||||++|+|..+|+ +|.+.+.|+.... +..++.+|||+ .+..+
T Consensus 43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 356999999999999999999999999999999999999998 9999999998643 33468899997 23445
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
.+..+|+|-+.-+.- ...+ +... +.+. .....+..+++.+|+.+.+|...
T Consensus 120 ~~~~~v~dvVlSg~~-~siG-----------------~y~~-~~~~----------~~~~~a~~lle~~g~~~la~r~~- 169 (257)
T COG1119 120 RVRETVRDVVLSGFF-ASIG-----------------IYQE-DLTA----------EDLAAAQWLLELLGAKHLADRPF- 169 (257)
T ss_pred ccccccceeeeeccc-cccc-----------------cccc-CCCH----------HHHHHHHHHHHHcchhhhccCch-
Confidence 567788887654321 1111 1110 0110 01123466899999999887555
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
..||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++...+.+.++.++|+.+|+-..|+++++
T Consensus 170 ----~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 170 ----GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred ----hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 5799999999999999999999999999999999999999999999998776788888888899999999999999
Q ss_pred ecCCeEEEecC
Q 001957 398 LSDGQIVYQGP 408 (991)
Q Consensus 398 L~~G~iv~~G~ 408 (991)
+++|+++++|.
T Consensus 246 l~~g~v~~~g~ 256 (257)
T COG1119 246 LKEGEVVAQGK 256 (257)
T ss_pred eeCCceeeccc
Confidence 99999999984
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.7e-31 Score=322.25 Aligned_cols=186 Identities=20% Similarity=0.210 Sum_probs=147.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|+.. +++.|
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-lf~~t 431 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFH-LFDDL 431 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChh-hhhhh
Confidence 5999999999999999999999999999999999999998 9999999999976543 467899999654 55668
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-------cccccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-------VCADTM 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~dt~ 315 (991)
+++|+. +.... ..+++.++.+++. +..||.
T Consensus 432 i~~n~~-------~~~~~------------------------------------~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 432 IGPDEG-------EHASL------------------------------------DNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred hhcccc-------cchhH------------------------------------HHHHHHHHHcCCchhhcccccccCCc
Confidence 888741 10000 0122344455544 344442
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..||||||||++|||+++.+|++|+|||||++||+.++..+.+.+.+..+..++|+|+..|++ ++.+.+|+|
T Consensus 469 ------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~--~~~~~~d~i 540 (555)
T TIGR01194 469 ------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD--QYFELADQI 540 (555)
T ss_pred ------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH--HHHHhCCEE
Confidence 579999999999999999999999999999999999999999876432222467777776654 467899999
Q ss_pred EEecCCeEEEe
Q 001957 396 ILLSDGQIVYQ 406 (991)
Q Consensus 396 ilL~~G~iv~~ 406 (991)
++|++|++++.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999864
No 337
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.7e-31 Score=316.98 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=156.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC--CCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN--HIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~--~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|+.. +++.+|
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN--------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEEcccccccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999873 46899999853 456799
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
|+|++.+... ... ....++.+|+.+||. +..|.. +
T Consensus 401 ~~~~~~~~~~---~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 436 (530)
T PRK15064 401 LFDWMSQWRQ---EGD------------------------------------DEQAVRGTLGRLLFSQDDIKKS-----V 436 (530)
T ss_pred HHHHHHHhcc---CCc------------------------------------cHHHHHHHHHHcCCChhHhcCc-----c
Confidence 9999864210 000 011245678899984 455544 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ ++|+|+ ++|+.+++..+||++++|++|
T Consensus 437 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~-vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 437 KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIF-VSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999875 345555 556778999999999999999
Q ss_pred eEE-EecCHHHHH
Q 001957 402 QIV-YQGPRELVL 413 (991)
Q Consensus 402 ~iv-~~G~~~~~~ 413 (991)
+++ +.|+.++++
T Consensus 512 ~i~~~~g~~~~~~ 524 (530)
T PRK15064 512 GVVDFSGTYEEYL 524 (530)
T ss_pred eEEEcCCCHHHHH
Confidence 998 889887664
No 338
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.1e-31 Score=315.76 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=156.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCCc----cccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..++ + +|+|.++|+++... ..++.++|++|++.+++
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY---SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCccc---CCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 4699999999999999999999999999999999998764 5 89999999875321 12356899999865543
Q ss_pred --CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccc
Q 001957 240 --EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (991)
Q Consensus 240 --~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (991)
..|+++++.++.... .... . ... .+....++++++.+||.+ ..|+.
T Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~-~----------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~- 398 (490)
T PRK10938 350 RVSTSVRNVILSGFFDS-IGIY-Q----------------AVS------------DRQQKLAQQWLDILGIDKRTADAP- 398 (490)
T ss_pred ccCCcHHHHHHhccccc-cccc-c----------------CCC------------HHHHHHHHHHHHHcCCchhhccCc-
Confidence 357777765432100 0000 0 000 000123567899999986 66654
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh-hcCeE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-LFDDI 395 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~-lfD~v 395 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. ++++|+.++|+..++.+ ++|++
T Consensus 399 ----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 399 ----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchhhhhhhhheeE
Confidence 4589999999999999999999999999999999999999999999998763 55545555677778877 59999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
++|++|++++.-
T Consensus 474 ~~l~~G~i~~~~ 485 (490)
T PRK10938 474 EFVPDGDIYRYV 485 (490)
T ss_pred EEecCCceEEee
Confidence 999999988753
No 339
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=6.7e-31 Score=285.61 Aligned_cols=215 Identities=23% Similarity=0.291 Sum_probs=179.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCeeCCCcccc-------ceEEEEec
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~--~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q 233 (991)
....++++|||.|++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-....+ ..+++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999999753 45689999999997544321 36899999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
++ .+.|-.|+...+.-..+++.... ++ .++..+-++|+..|+++.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~---------~~------------------------~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLS---------RA------------------------AARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhccc---------HH------------------------HHHHHHHHHHHHcCCCch
Confidence 96 46778899888888777652211 11 122345568899999876
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
...+ +.++++|||||||||.||+||+.+|++|+.|||||+||.....+|++.|+++-++. +..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5443 57899999999999999999999999999999999999999999999999997654 56666788999999999
Q ss_pred cCeEEEecCCeEEEecCHHHHH
Q 001957 392 FDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~ 413 (991)
+|+|+||.+|++|++|+++++.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999998873
No 340
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-31 Score=314.85 Aligned_cols=202 Identities=18% Similarity=0.294 Sum_probs=160.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCC---CCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHD---NHI 238 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 238 (991)
.+|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|+. .++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 5899999999999999999999999999999999999998 9999999998865332 34589999974 367
Q ss_pred CCCCHHHHHHHH-----HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccc
Q 001957 239 GEMTVRETLAFS-----ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCA 312 (991)
Q Consensus 239 ~~lTV~E~l~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~ 312 (991)
+.+|+.+|..+. ....+... + ......++.+++.+++. ...
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~ 385 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLD---------N------------------------SRMKSDTQWVIDSMRVKTPGH 385 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccC---------c------------------------HHHHHHHHHHHHhcCccCCCc
Confidence 889988774332 10000000 0 00112345678888985 344
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
|+ .+..|||||||||+||++++.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+.+++.++|
T Consensus 386 ~~-----~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~v-sHd~~~~~~~~ 458 (491)
T PRK10982 386 RT-----QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIII-SSEMPELLGIT 458 (491)
T ss_pred cc-----ccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEE-CCChHHHHhhC
Confidence 54 4568999999999999999999999999999999999999999999999865 46665554 56778899999
Q ss_pred CeEEEecCCeEEEecCHH
Q 001957 393 DDIILLSDGQIVYQGPRE 410 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~ 410 (991)
|++++|++|+++..++.+
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999877553
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.3e-31 Score=268.68 Aligned_cols=208 Identities=25% Similarity=0.371 Sum_probs=168.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccce---EEEEecCC--CC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT---AAYISQHD--NH 237 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~---~~yv~Q~d--~~ 237 (991)
..++||+++|++|..|+++-|+|.||||||||+|+|+|.+.++ +|+|.++|.+++.....+. ++-|+|++ -.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 4567999999999999999999999999999999999999999 9999999999988765543 45678985 45
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHH--cCCccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV--LGLDVCADTM 315 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~dt~ 315 (991)
+++|||.||+..+.. +|...... ..+..+.+ +.| .+-++. +||++..++.
T Consensus 94 ~~~lTieENl~la~~-Rg~~rgl~--~~ln~~~~----------~~f---------------~~~l~~l~lgLenrL~~~ 145 (263)
T COG1101 94 APELTIEENLALAES-RGKKRGLS--SALNERRR----------SSF---------------RERLARLGLGLENRLSDR 145 (263)
T ss_pred cccccHHHHHHHHHh-cCcccccc--hhhhHHHH----------HHH---------------HHHHhhcccchhhhhcCh
Confidence 899999999999753 33221110 00111000 011 112333 5778888888
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+| -|||||||-|+++.|.+++|+||+|||-|++|||.++..+++.-.++..+..-|+++. +|.+..+.++-+|.
T Consensus 146 ig-----lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMV-THnm~~Al~yG~Rl 219 (263)
T COG1101 146 IG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRL 219 (263)
T ss_pred hh-----hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEE-eccHHHHHhhCCeE
Confidence 77 5999999999999999999999999999999999999999999999988766666664 67899999999999
Q ss_pred EEecCCeEEEec
Q 001957 396 ILLSDGQIVYQG 407 (991)
Q Consensus 396 ilL~~G~iv~~G 407 (991)
|+|++|+||.+-
T Consensus 220 ImLh~G~IvlDv 231 (263)
T COG1101 220 IMLHSGKIVLDV 231 (263)
T ss_pred EEEeCCeEEEEc
Confidence 999999999763
No 342
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.8e-31 Score=278.75 Aligned_cols=174 Identities=26% Similarity=0.289 Sum_probs=150.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
...+++||||.|++||+++|+|.||||||||-++|.|+++|+ +|+|.++|+++..+.
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~-------------------- 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS-------------------- 81 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc--------------------
Confidence 367999999999999999999999999999999999999999 999999999876543
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
. . + ....+.++|+.+||..- ..++++++
T Consensus 82 -------~--------~----~-----------------------------~~~~v~elL~~Vgl~~~----~~~ryPhe 109 (268)
T COG4608 82 -------K--------E----E-----------------------------RRERVLELLEKVGLPEE----FLYRYPHE 109 (268)
T ss_pred -------h--------h----H-----------------------------HHHHHHHHHHHhCCCHH----HhhcCCcc
Confidence 0 0 0 01134567888897642 22478899
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
+|||||||+.|||||+.+|+++++|||+|+||.+.+.+|++.|+++.+..+ ...+.|+|+...+..++|+|.+|..|+|
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~-lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-LTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC-CeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 999999999999999999999999999999999999999999999977544 5556677899999999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
|+.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999999885
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.2e-30 Score=312.43 Aligned_cols=191 Identities=22% Similarity=0.317 Sum_probs=155.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|++|+. .+++.+||
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET--------VKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEEeCchhhcCCCCCH
Confidence 45999999999999999999999999999999999999998 999999542 1589999985 67889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
+|++.+.....+.... ......+++.+||.. ..|.. +.
T Consensus 406 ~e~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 444 (556)
T PRK11819 406 WEEISGGLDIIKVGNR------------------------------------EIPSRAYVGRFNFKGGDQQKK-----VG 444 (556)
T ss_pred HHHHHhhccccccccc------------------------------------HHHHHHHHHhCCCChhHhcCc-----hh
Confidence 9999986532111000 001234688899963 44544 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ .+|+| .++|+..++..+||+|++|++ |
T Consensus 445 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi-~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 445 VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAV-VISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEE-EEECCHHHHHHhCCEEEEEECCC
Confidence 89999999999999999999999999999999999999999999985 24554 567788899999999999985 7
Q ss_pred eEE-EecCHHHH
Q 001957 402 QIV-YQGPRELV 412 (991)
Q Consensus 402 ~iv-~~G~~~~~ 412 (991)
+++ +.|+.++.
T Consensus 520 ~~~~~~g~~~~~ 531 (556)
T PRK11819 520 QVEWFEGNFQEY 531 (556)
T ss_pred eEEEecCCHHHH
Confidence 876 57776544
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=3.4e-30 Score=310.79 Aligned_cols=190 Identities=22% Similarity=0.322 Sum_probs=154.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. .+++.+||
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 46999999999999999999999999999999999999998 999999542 2589999985 47888999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
+|++.++....+.... ......+++.+||.. ..|.. +.
T Consensus 404 ~e~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~ 442 (552)
T TIGR03719 404 WEEISGGLDIIQLGKR------------------------------------EVPSRAYVGRFNFKGSDQQKK-----VG 442 (552)
T ss_pred HHHHHhhccccccCcc------------------------------------hHHHHHHHHhCCCChhHhcCc-----hh
Confidence 9999986432111000 001234688899963 44544 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC-C
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-G 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~-G 401 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ ++|+| .++|+...+.++||+|++|++ |
T Consensus 443 ~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~vi-ivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAV-VISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEE-EEeCCHHHHHHhCCEEEEEECCC
Confidence 89999999999999999999999999999999999999999999986 23544 566778899999999999986 6
Q ss_pred eEE-EecCHHH
Q 001957 402 QIV-YQGPREL 411 (991)
Q Consensus 402 ~iv-~~G~~~~ 411 (991)
+++ +.|+.++
T Consensus 518 ~~~~~~g~~~~ 528 (552)
T TIGR03719 518 HVEWFEGNYSE 528 (552)
T ss_pred eEEEeCCCHHH
Confidence 876 6676654
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=2.4e-30 Score=311.69 Aligned_cols=183 Identities=24% Similarity=0.285 Sum_probs=155.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++ ..++|++|+..+.+.+||+|+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE----------LKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe----------eeEEEecccccCCCCCcHHHH
Confidence 599999999999999999999999999999999999998 9999986 148999999888899999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+...... ....++++|+.+||.+..|+. +..|||
T Consensus 421 l~~~~~~~~---------------------------------------~~~~~~~~L~~l~l~~~~~~~-----~~~LSG 456 (590)
T PRK13409 421 LRSITDDLG---------------------------------------SSYYKSEIIKPLQLERLLDKN-----VKDLSG 456 (590)
T ss_pred HHHHhhhcC---------------------------------------hHHHHHHHHHHCCCHHHHhCC-----cccCCH
Confidence 987532100 001235678999998776654 458999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+ ++|+..++..++|+|++|+ |++...
T Consensus 457 Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii-vsHD~~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV-VDHDIYMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEc-Ccceee
Confidence 99999999999999999999999999999999999999999987654556555 5667788999999999996 588777
Q ss_pred cC
Q 001957 407 GP 408 (991)
Q Consensus 407 G~ 408 (991)
|.
T Consensus 535 g~ 536 (590)
T PRK13409 535 GH 536 (590)
T ss_pred ee
Confidence 75
No 346
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=291.33 Aligned_cols=204 Identities=25% Similarity=0.317 Sum_probs=172.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (991)
...+++|||+.+++||+.||+|.||||||||+++|.|.+.|+ +|+|.+||+++.-..|. .-+|+|.|+..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 567999999999999999999999999999999999999999 99999999998655543 46899999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
++||.||+..+..-.... . +.+ ......++++.+..||+--.|..|+
T Consensus 93 ~lTV~ENiiLg~e~~~~~-~------~~~------------------------~~~~~~i~~l~~~yGl~vdp~~~V~-- 139 (501)
T COG3845 93 TLTVAENIILGLEPSKGG-L------IDR------------------------RQARARIKELSERYGLPVDPDAKVA-- 139 (501)
T ss_pred ccchhhhhhhcCcccccc-c------cCH------------------------HHHHHHHHHHHHHhCCCCCccceee--
Confidence 999999999986421000 0 000 0112345678889999988887775
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.||-||||||.|-++|.++|++|+|||||+-|-+....++++.|+++++ .|+| |+.|+|-..|+.++||++.||.
T Consensus 140 ---dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~t-Ii~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 140 ---DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKT-IIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeccHHHHHHhhCeeEEEe
Confidence 6999999999999999999999999999999999999999999999876 4555 4556789999999999999999
Q ss_pred CCeEEEecC
Q 001957 400 DGQIVYQGP 408 (991)
Q Consensus 400 ~G~iv~~G~ 408 (991)
.|+++-.-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999876544
No 347
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=330.65 Aligned_cols=208 Identities=28% Similarity=0.400 Sum_probs=187.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc----ccceEEEEecCCCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~lT 242 (991)
+++++|+.+++||+.+++|||||||||++++|.|..+|+ +|++.++|+++.... .++.+||+||.|.+.+.+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT 656 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELT 656 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhcc
Confidence 899999999999999999999999999999999999999 999999999986422 3578999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
.||+|.+.++++|.... +.+..++..++.+||.+.+|+.++
T Consensus 657 ~rEhL~~~arlrG~~~~----------------------------------di~~~v~~ll~~~~L~~~~~~~~~----- 697 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRS----------------------------------DIGSAIEKLLRLVGLGPYANKQVR----- 697 (885)
T ss_pred HHHHHHHHHHHcCCChh----------------------------------HHHHHHHHHHHHcCChhhhccchh-----
Confidence 99999999999986321 112346788999999999998765
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.+|||+|||+++|.+|+++|++++|||||+|+|+.++..+++.++++.+ .++ .|+.++|.++|+..+|||+.+|.+|+
T Consensus 698 ~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~-aiiLTSHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 698 TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGK-AIILTSHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCC-EEEEEcCCHHHHHHHhhhhheeecCe
Confidence 7999999999999999999999999999999999999999999999865 445 56666789999999999999999999
Q ss_pred EEEecCHHHHHHHHHh
Q 001957 403 IVYQGPRELVLEFFAS 418 (991)
Q Consensus 403 iv~~G~~~~~~~~f~~ 418 (991)
+..-|+++++...|..
T Consensus 776 l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 776 LRCIGSPQELKSRYGS 791 (885)
T ss_pred eEEecChHHHHhhcCC
Confidence 9999999999988864
No 348
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-30 Score=282.73 Aligned_cols=190 Identities=24% Similarity=0.279 Sum_probs=152.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCccc-----cceEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFVP-----QRTAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~~-----~~~~~ 229 (991)
.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|. ++|+++..... ...++
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 5999999 59999999999999999999999999999998 99996 88887754211 12468
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc
Q 001957 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309 (991)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 309 (991)
|++|+...++ .++.+++.+..... + ....++++++.+||+
T Consensus 91 ~~~~~~~~~~-~~~~~~i~~~l~~~-------------~--------------------------~~~~~~~~l~~~gl~ 130 (255)
T cd03236 91 VKPQYVDLIP-KAVKGKVGELLKKK-------------D--------------------------ERGKLDELVDQLELR 130 (255)
T ss_pred eecchhccCc-hHHHHHHHHHhchh-------------H--------------------------HHHHHHHHHHHcCCc
Confidence 9999877777 48888887642100 0 011245678899998
Q ss_pred ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 310 ~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
+..+.. +..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|+ ++|+..++.
T Consensus 131 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIi-iSHd~~~~~ 203 (255)
T cd03236 131 HVLDRN-----IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLV-VEHDLAVLD 203 (255)
T ss_pred hhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHH
Confidence 766544 468999999999999999999999999999999999999999999999865 3555555 566777888
Q ss_pred hhcCeEEEecCCeEEEec
Q 001957 390 DLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 390 ~lfD~vilL~~G~iv~~G 407 (991)
++||+|++| +|+++++|
T Consensus 204 ~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 204 YLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HhCCEEEEE-CCCCCcce
Confidence 899999999 56676655
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=309.50 Aligned_cols=189 Identities=25% Similarity=0.312 Sum_probs=153.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC--CCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lT 242 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. .+.+..|
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG--------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC--------EEEEEecCcchhhCCccch
Confidence 46999999999999999999999999999999999999998 999999741 2589999963 3445667
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (991)
|.+++.-. . .. .....+..+|+.+++.. ..++.+
T Consensus 394 ~~~~~~~~---~-~~------------------------------------~~~~~~~~~L~~~~l~~~~~~~~~----- 428 (638)
T PRK10636 394 PLQHLARL---A-PQ------------------------------------ELEQKLRDYLGGFGFQGDKVTEET----- 428 (638)
T ss_pred HHHHHHHh---C-ch------------------------------------hhHHHHHHHHHHcCCChhHhcCch-----
Confidence 77765310 0 00 00112456788999963 455544
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+|+ ++|+...+..+||+|++|++|
T Consensus 429 ~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~-vSHd~~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 429 RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVV-VSHDRHLLRSTTDDLYLVHDG 503 (638)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEE-EeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999885 345554 567888999999999999999
Q ss_pred eEE-EecCHHHHHH
Q 001957 402 QIV-YQGPRELVLE 414 (991)
Q Consensus 402 ~iv-~~G~~~~~~~ 414 (991)
+++ +.|+.++..+
T Consensus 504 ~i~~~~g~~~~~~~ 517 (638)
T PRK10636 504 KVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCHHHHHH
Confidence 997 8999887643
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.7e-29 Score=248.29 Aligned_cols=209 Identities=24% Similarity=0.292 Sum_probs=174.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc--cc-cceEEEEecCCC--C
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VP-QRTAAYISQHDN--H 237 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~--~~-~~~~~yv~Q~d~--~ 237 (991)
....+++.|||+++.|+.+||+|.||||||||.|+|+|..+|+ +|+|.+||+++.-- .. .+.+-+|+|+++ +
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~ 100 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL 100 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhhheeeeecCCcccc
Confidence 4567999999999999999999999999999999999999999 99999999987532 22 267899999864 5
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (991)
.|.+.|..-|++..++...- + .+..+..+-+.|+.+||- +.++
T Consensus 101 NPRl~iGqiLd~PL~l~T~~----------------------~-----------~~~R~~~i~~TL~~VGL~Pdhan--- 144 (267)
T COG4167 101 NPRLRIGQILDFPLRLNTDL----------------------E-----------PEQRRKQIFETLRMVGLLPDHAN--- 144 (267)
T ss_pred ChhhhhhhHhcchhhhcccC----------------------C-----------hHHHHHHHHHHHHHhccCccccc---
Confidence 67788888888877653211 0 111223455678899984 4444
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
-++.-||-||||||++||||+-+|+|++.||.-.+||.+.+-++++.+-++-.+ .+..-|.+.|+..-+-.++|+|+
T Consensus 145 --~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek-~GiSyiYV~QhlG~iKHi~D~vi 221 (267)
T COG4167 145 --YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHIGMIKHISDQVL 221 (267)
T ss_pred --cchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH-hCceEEEEechhhHhhhhcccEE
Confidence 456789999999999999999999999999999999999999999999998764 45666667899999999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
||++|++|+.|.+.+++
T Consensus 222 VM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 222 VMHEGEVVERGSTADVL 238 (267)
T ss_pred EEecCceeecCChhhhh
Confidence 99999999999999885
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=1.4e-29 Score=310.15 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=142.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+++++||.++|+||||||||||+++|+|+++++ +|+|.+++ ++.++||+|++.+++. ||+|
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA--------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC--------CCcEEEECCCCCCCCc-CHHH
Confidence 5999999999999999999999999999999999999988 89998864 4579999998876665 9999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc------ccccccCc
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC------ADTMVGDE 319 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~------~dt~vg~~ 319 (991)
|+.++....... . ++. ....++++++.++|++. .||..+
T Consensus 534 ni~~~~~~~~~~----------~--------~~~---------------~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-- 578 (659)
T TIGR00954 534 QIIYPDSSEDMK----------R--------RGL---------------SDKDLEQILDNVQLTHILEREGGWSAVQD-- 578 (659)
T ss_pred HHhcCCChhhhh----------c--------cCC---------------CHHHHHHHHHHcCCHHHHhhcCCcccccc--
Confidence 998864321100 0 000 00123445666676543 344443
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.+++ .+.|+|++.|++ +..+.+|++++|+
T Consensus 579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~--~~~~~~d~il~l~ 652 (659)
T TIGR00954 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRK--SLWKYHEYLLYMD 652 (659)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCch--HHHHhCCEEEEEe
Confidence 3468999999999999999999999999999999999999999998876 356776665554 3468899999996
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3e-29 Score=306.72 Aligned_cols=191 Identities=27% Similarity=0.357 Sum_probs=154.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.++ .++|++|+. .+++.+||
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL-------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc-------EEEEEeCcccccCCCCCH
Confidence 46999999999999999999999999999999999999998 999998 4322 589999974 57889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
.|++.++....... . ....+..+|+.+++. +..++.+ .
T Consensus 401 ~e~l~~~~~~~~~~-------~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 439 (635)
T PRK11147 401 MDNLAEGKQEVMVN-------G-----------------------------RPRHVLGYLQDFLFHPKRAMTPV-----K 439 (635)
T ss_pred HHHHHhhccccccc-------c-----------------------------hHHHHHHHHHhcCCCHHHHhChh-----h
Confidence 99998753210000 0 001234578888885 4555544 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec-CC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-DG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~-~G 401 (991)
.|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+|+ ++|+...+..+||+|++|. +|
T Consensus 440 ~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~-vSHd~~~~~~~~d~i~~l~~~g 514 (635)
T PRK11147 440 ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLL-VSHDRQFVDNTVTECWIFEGNG 514 (635)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEE-EECCHHHHHHhcCEEEEEeCCC
Confidence 79999999999999999999999999999999999999999999874 345555 5677888999999999997 89
Q ss_pred eEE-EecCHHHH
Q 001957 402 QIV-YQGPRELV 412 (991)
Q Consensus 402 ~iv-~~G~~~~~ 412 (991)
+++ |.|+-++.
T Consensus 515 ~i~~~~g~y~~y 526 (635)
T PRK11147 515 KIGRYVGGYHDA 526 (635)
T ss_pred eEEEccCCHHHH
Confidence 986 45666554
No 353
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.2e-28 Score=256.07 Aligned_cols=240 Identities=21% Similarity=0.217 Sum_probs=187.5
Q ss_pred eEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 001957 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (991)
Q Consensus 117 ~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~ 196 (991)
+-++++||+.....+. ...-++ .+.+.+...- ..+.....+|+||||++++||.++|+|+|||||||||+
T Consensus 2 ~~I~~~~V~k~~~~~~--~~~~~~-------~~~~~~~~~~-~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlk 71 (249)
T COG1134 2 VVIKVSNVSKKFRIYH--EKSYSL-------KKRLKGLAKG-GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLK 71 (249)
T ss_pred cEEEeeceeEEEecch--hhhhhH-------HHHHHHHhcC-CCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHH
Confidence 3578889888876531 000111 1112222111 11445678999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCC
Q 001957 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276 (991)
Q Consensus 197 ~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (991)
+|+|.++|+ +|+|.++|+-..-+. -.--+-|++|.+||+.+-+.+.|... +
T Consensus 72 liaGi~~Pt---~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~G~~~----------~------- 122 (249)
T COG1134 72 LIAGIYKPT---SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLILGLTR----------K------- 122 (249)
T ss_pred HHhCccCCC---CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHhCccH----------H-------
Confidence 999999999 999999997432111 11235578999999999888765421 1
Q ss_pred CCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001957 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356 (991)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~ 356 (991)
+.+..++++++.-+|.+..|+.| +.+|-|++-|++.|.+...+|+||++||-.+-.|+
T Consensus 123 -----------------ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 123 -----------------EIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 12335677788888888887655 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecCHHHHHHHHHhc
Q 001957 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419 (991)
Q Consensus 357 ~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~~~~~~~~f~~~ 419 (991)
.-.....+.++++.+ ++ .+|+.++|+...+.++||++++|++|++.+.|.++++.++|+..
T Consensus 181 ~F~~K~~~rl~e~~~-~~-~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 181 AFQEKCLERLNELVE-KN-KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHHHH-cC-CEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 999999999999865 34 55555677888999999999999999999999999999988753
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=3.1e-29 Score=249.63 Aligned_cols=131 Identities=31% Similarity=0.500 Sum_probs=117.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|. +.++|++|
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~~------------ 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--------VKIGYFEQ------------ 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--------EEEEEEcc------------
Confidence 4999999999999999999999999999999999999998 999999984 24555544
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
||
T Consensus 71 ------------------------------------------------------------------------------lS 72 (144)
T cd03221 71 ------------------------------------------------------------------------------LS 72 (144)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 89
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+||+||++||++|+.+|++++|||||+|||..++..+.+.|+++ +.|+++ ++|..+++.+++|++++|++|+
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~-~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVIL-VSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEE-EECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999875 245555 5667778889999999999985
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=251.79 Aligned_cols=179 Identities=28% Similarity=0.414 Sum_probs=155.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~ 240 (991)
....++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|.++|.+++... .++.+-|+.-++-+=++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 4567999999999999999999999999999999999999999 999999999987643 23667888888888899
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
|||.|||.|..+..+.... ..+.+.++.+||....|..++
T Consensus 90 LTa~ENL~F~~~~~~~~~~-------------------------------------~~i~~Al~~vgL~g~~dlp~~--- 129 (209)
T COG4133 90 LTALENLHFWQRFHGSGNA-------------------------------------ATIWEALAQVGLAGLEDLPVG--- 129 (209)
T ss_pred hhHHHHHHHHHHHhCCCch-------------------------------------hhHHHHHHHcCcccccccchh---
Confidence 9999999999876543110 123457889999999888775
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+||-||||||+|||.++.++++-+||||+++||......+-..+..-++ .|+.||.++|||.+.
T Consensus 130 --~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 130 --QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred --hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 7999999999999999999999999999999999999999998888765 688999999999864
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.2e-28 Score=301.91 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=151.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|+. ...+++.
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~--------~~igyv~Q~~--~~~l~~~ 588 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK--------VRMAVFSQHH--VDGLDLS 588 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc--------eeEEEEeccc--cccCCcc
Confidence 35999999999999999999999999999999999999998 999998752 4689999974 3456666
Q ss_pred HHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 245 ETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 245 E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
++..+.. ... .+. ....+..+|+.+||.. ..+. .+.
T Consensus 589 ~~~~~~~~~~~-~~~------------------------------------~~~~i~~~L~~~gl~~~~~~~-----~~~ 626 (718)
T PLN03073 589 SNPLLYMMRCF-PGV------------------------------------PEQKLRAHLGSFGVTGNLALQ-----PMY 626 (718)
T ss_pred hhHHHHHHHhc-CCC------------------------------------CHHHHHHHHHHCCCChHHhcC-----Ccc
Confidence 6643321 110 000 0012456788999963 4443 456
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|+|||||+|||..+...+++.|++. ++|+|+ ++|+...+..+||++++|.+|+
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIi-vSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLM-VSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEE-EECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999888763 345544 5677889999999999999999
Q ss_pred EE-EecCHHHHHH
Q 001957 403 IV-YQGPRELVLE 414 (991)
Q Consensus 403 iv-~~G~~~~~~~ 414 (991)
++ +.|+.++..+
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 98 7888776544
No 357
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-28 Score=297.48 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=154.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++|++|+...+ ..|+.
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~--------~~i~~~~q~~~~~-~~~~~ 81 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN--------WQLAWVNQETPAL-PQPAL 81 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCC-CCCHH
Confidence 45999999999999999999999999999999999999998 999999874 2489999965433 36776
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHH---H-hhhhhhhHHHHHHHHHcCCc-ccccccccCc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI---A-TEGQEANVITDYYLKVLGLD-VCADTMVGDE 319 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 319 (991)
+.+.-.... ...+.......... .+...+.... . ..+......++.+|+.+||. +..|..+
T Consensus 82 ~~v~~~~~~---------~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~--- 147 (638)
T PRK10636 82 EYVIDGDRE---------YRQLEAQLHDANER--NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV--- 147 (638)
T ss_pred HHHHHhhHH---------HHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch---
Confidence 655422110 00110000000000 0000000000 0 01112234577889999996 4566544
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ ++|+| .++|+...+.++||+|++|+
T Consensus 148 --~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvi-ivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 148 --SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLI-LISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred --hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEE-EEeCCHHHHHHhcCEEEEEe
Confidence 579999999999999999999999999999999999999999999874 34544 45678889999999999999
Q ss_pred CCeEE-EecCHHHH
Q 001957 400 DGQIV-YQGPRELV 412 (991)
Q Consensus 400 ~G~iv-~~G~~~~~ 412 (991)
+|+++ |.|+.+..
T Consensus 221 ~G~i~~~~g~~~~~ 234 (638)
T PRK10636 221 QQSLFEYTGNYSSF 234 (638)
T ss_pred CCEEEEecCCHHHH
Confidence 99996 66765543
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=5.9e-29 Score=255.10 Aligned_cols=146 Identities=26% Similarity=0.357 Sum_probs=124.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+++++ +.+++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+.
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~---------i~~~~q~~--------- 70 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT---------PVYKPQYI--------- 70 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE---------EEEEcccC---------
Confidence 4688885 899999999999999999999999999999998 9999999853 56666520
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|+ ++|...++.+++|++++|+++-.+
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii-vsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV-VEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE-EECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999986532355555 566777888899999999988777
Q ss_pred Ee--cCHHH
Q 001957 405 YQ--GPREL 411 (991)
Q Consensus 405 ~~--G~~~~ 411 (991)
+. |++..
T Consensus 152 ~~~~~~~~~ 160 (177)
T cd03222 152 YGIASQPKG 160 (177)
T ss_pred ceeccCCcc
Confidence 65 55543
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=8e-29 Score=253.89 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=124.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+++++|++++|+|||||||||||++|.+ . +|+|.++|... .. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~-~~-~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLP-KF-SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCccc-cc-ccccEEEEhH----------
Confidence 3569999999999999999999999999999999963 3 89999988732 21 1234678776
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~ 322 (991)
.| .++.++|.. ..+ ..++
T Consensus 68 ~~--------------------------------------------------------~l~~~~L~~~~~~-----~~~~ 86 (176)
T cd03238 68 LQ--------------------------------------------------------FLIDVGLGYLTLG-----QKLS 86 (176)
T ss_pred HH--------------------------------------------------------HHHHcCCCccccC-----CCcC
Confidence 01 234556643 233 3456
Q ss_pred CCChhHhHHHHHHHHHhcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 323 GISGGQKKRVTTGEMMVGP--ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~--p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.||||||||++||++|+.+ |++++|||||+|||..++..+.+.|+++.+ .+.|+|++.| ...++ +.+|++++|.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH-~~~~~-~~~d~i~~l~~ 163 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEH-NLDVL-SSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-CHHHH-HhCCEEEEECC
Confidence 8999999999999999999 999999999999999999999999999864 5667666554 45554 68999999966
Q ss_pred CeE
Q 001957 401 GQI 403 (991)
Q Consensus 401 G~i 403 (991)
|+.
T Consensus 164 g~~ 166 (176)
T cd03238 164 GSG 166 (176)
T ss_pred CCC
Confidence 443
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.6e-29 Score=237.48 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=153.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (991)
.....|-|||++|.+||++-|||||||||||||..+.|.+.+...++|++.+|++.++.... +|.+|..+|++.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 34569999999999999999999999999999999999999988899999999999987654 58999999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
+|.+||.|+.-..-. +...+..++..|+..||+...+. .+
T Consensus 93 sVg~Nl~fAlp~~~K-----------------------------------G~aRr~~a~aAL~~~gL~g~f~~-----dP 132 (213)
T COG4136 93 SVGQNLLFALPATLK-----------------------------------GNARRNAANAALERSGLDGAFHQ-----DP 132 (213)
T ss_pred ccccceEEecCcccc-----------------------------------cHHHHhhHHHHHHHhccchhhhc-----Ch
Confidence 999999998632111 11112235667889999887763 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
.+||||||-||++-|+|+..|+.++||||+|-||..-+.++.+..-.-++..+.-+|..+ |+..++
T Consensus 133 ~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VT-HD~~Dv 198 (213)
T COG4136 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVT-HDLQDV 198 (213)
T ss_pred hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-cccccC
Confidence 789999999999999999999999999999999999998888877666665566666554 555443
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.6e-28 Score=295.99 Aligned_cols=182 Identities=24% Similarity=0.292 Sum_probs=147.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCcc-----ccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFV-----PQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~-----~~~~~ 228 (991)
..+|++++ .+++|++++|+|||||||||||++|+|.++|+ +|+|. ++|+++.... .+..+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46999999 99999999999999999999999999999998 99998 9998875321 11235
Q ss_pred EEEecCCCCCC---CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHH
Q 001957 229 AYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305 (991)
Q Consensus 229 ~yv~Q~d~~~~---~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 305 (991)
+|.+|.....| ..||+|++.+.. ....++++++.
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~l~~ 199 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKVD-------------------------------------------ERGKLDEVVER 199 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhhh-------------------------------------------HHHHHHHHHHH
Confidence 66666533333 349999886310 00124568899
Q ss_pred cCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 306 LGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 306 lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
+||.+..|+.+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ +.| |+.++|..
T Consensus 200 l~l~~~~~~~~-----~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~t-vIivsHd~ 271 (590)
T PRK13409 200 LGLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKY-VLVVEHDL 271 (590)
T ss_pred cCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCE-EEEEeCCH
Confidence 99988777655 57999999999999999999999999999999999999999999999864 555 45556788
Q ss_pred chhHhhcCeEEEecCC
Q 001957 386 PETYDLFDDIILLSDG 401 (991)
Q Consensus 386 ~~~~~lfD~vilL~~G 401 (991)
.++..++|+|++|.+|
T Consensus 272 ~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 272 AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 8999999999999764
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.2e-27 Score=300.25 Aligned_cols=257 Identities=21% Similarity=0.262 Sum_probs=192.0
Q ss_pred hHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC-CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
.....+||+.+..+...|.- ......+..-. |...+|.|+|+++.|...
T Consensus 1102 n~m~SVERv~eY~~~~~E~p---~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~--------------------------- 1151 (1381)
T KOG0054|consen 1102 NNMVSVERVLEYTDIPSEAP---LEIEESRPPPSWPSKGEIEFEDLSLRYRPN--------------------------- 1151 (1381)
T ss_pred hcchhhhHHHHHhcCCCCCC---CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC---------------------------
Confidence 34556788888777544410 11001110011 125899999999998532
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
--.+|||||++|+|||-++|+|..|||||||+++|-++..+. +|+|.+||.++.+... ++.++.|||++
T Consensus 1152 -----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1152 -----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred -----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 124999999999999999999999999999999999999998 9999999999988754 57899999966
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. ++..|||+||+=.-+. ..+.+. +++..... ....+ .++...|+.
T Consensus 1224 v-LFsGTvR~NLDPf~e~-----sD~~IW---------------------~ALe~~~L------k~~v~--~~p~~Ld~~ 1268 (1381)
T KOG0054|consen 1224 V-LFSGTVRFNLDPFDEY-----SDDEIW---------------------EALERCQL------KDVVS--SLPGGLDSE 1268 (1381)
T ss_pred c-eecCccccccCccccc-----CHHHHH---------------------HHHHHhCh------HHHHh--hCCcCCCce
Confidence 5 5678999999743211 011111 22211110 11122 566667888
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|. +....+|-||||-+++||||+++++||+|||+|+..|+.|-..|.+.||+-- ...+|++|-|... +.--+|||
T Consensus 1269 v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F---~dcTVltIAHRl~-TVmd~DrV 1343 (1381)
T KOG0054|consen 1269 VS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF---KDCTVLTIAHRLN-TVMDSDRV 1343 (1381)
T ss_pred ec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh---cCCeEEEEeeccc-hhhhcCeE
Confidence 86 4566799999999999999999999999999999999999999999999843 3455666666554 55558999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
+||++|+++++|+|.++++
T Consensus 1344 lVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEeeCCeEeecCChHHHHh
Confidence 9999999999999999974
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.5e-28 Score=234.90 Aligned_cols=202 Identities=29% Similarity=0.406 Sum_probs=153.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--------Cccc----cceEEEEec
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--------EFVP----QRTAAYISQ 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--------~~~~----~~~~~yv~Q 233 (991)
.--+||||.+.|||+++|+|.|||||||||++|++++.|+ .|+|.|.-.+-. +... +-.-|+|.|
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 3579999999999999999999999999999999999999 999999754321 1111 123589999
Q ss_pred CCCCCCCC------CHHHHHHH-HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc
Q 001957 234 HDNHIGEM------TVRETLAF-SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306 (991)
Q Consensus 234 ~d~~~~~l------TV~E~l~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 306 (991)
++.-=-.+ .|.|-+.- +++-.| + .......+|+..
T Consensus 97 nP~DGLRm~VSAG~NiGERlma~G~RHYG------------------------~--------------iR~~a~~WL~~V 138 (258)
T COG4107 97 NPRDGLRMQVSAGGNIGERLMAIGARHYG------------------------N--------------IRAEAQDWLEEV 138 (258)
T ss_pred CccccceeeeccCCccchhHHhhhhhhhh------------------------h--------------HHHHHHHHHHhc
Confidence 85321112 22222211 111000 0 011223467777
Q ss_pred CCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 307 GLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 307 gL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
.++... + ++.++..|||++||+.|||-|+..|++.||||||-|||.+-...++++++.+.+..+..+||. +|+..
T Consensus 139 EI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viV-THDl~ 213 (258)
T COG4107 139 EIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-THDLA 213 (258)
T ss_pred ccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEE-echhH
Confidence 765432 2 467899999999999999999999999999999999999999999999999998777666665 56777
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
-+.-++|+.++|.+|+++++|-.+.++
T Consensus 214 VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 214 VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhhhcceeecCCCEeccccccccc
Confidence 888899999999999999999888875
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.5e-27 Score=238.37 Aligned_cols=142 Identities=34% Similarity=0.549 Sum_probs=120.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+++|+.+++|++++|+||||||||||+++|+|.+++. +|+|+++|.++..... ++.++|++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~---------- 79 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVP---------- 79 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEe----------
Confidence 5999999999999999999999999999999999999988 9999999987653200 01111211
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
T Consensus 80 -------------------------------------------------------------------------------- 79 (157)
T cd00267 80 -------------------------------------------------------------------------------- 79 (157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
+|||||+||++||++++.+|++++|||||+|||..++..+.+.|+++.. .+.|+++ ++|...++..++|++++|++|+
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~-~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVII-VTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCcC
Confidence 2999999999999999999999999999999999999999999998765 3455544 5567778888899999999875
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=271.61 Aligned_cols=217 Identities=26% Similarity=0.312 Sum_probs=163.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ ...++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 456999999999999999999999999999999999999998 99998753 2368999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCC---ChHHHHHH-HHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP---DIDVYMKA-IATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+.+.-+.... .+...+...... ..+++ ..+..... ....+-+.+..+..+|.-||++.. ++.+
T Consensus 84 ~~~v~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~--- 151 (530)
T COG0488 84 LDYVIEGFGEL-----RELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV--- 151 (530)
T ss_pred HHHHHhhhHHH-----HHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch---
Confidence 99998765321 111111111110 00111 00000000 111223345567788999999876 6555
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
..||||||.||++|++|+.+|++|+|||||+.||..+...+-+.|++. .+ ++|.++|++..+-+.|++|+-++
T Consensus 152 --~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g--tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 152 --SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG--TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC--cEEEEeCCHHHHHHHhhheEEec
Confidence 479999999999999999999999999999999999999999999863 34 44556789999999999999999
Q ss_pred CCeEE-EecCHH
Q 001957 400 DGQIV-YQGPRE 410 (991)
Q Consensus 400 ~G~iv-~~G~~~ 410 (991)
.|++. |.|..+
T Consensus 225 ~g~l~~y~Gny~ 236 (530)
T COG0488 225 RGKLTPYKGNYS 236 (530)
T ss_pred CCceeEecCCHH
Confidence 99775 555544
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.2e-27 Score=235.74 Aligned_cols=134 Identities=37% Similarity=0.578 Sum_probs=117.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCCCHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
|+|||+.|++|++++|+||||||||||+++|+|..++. +|+|.+||.++... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999987 99999999999772 2347899999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|+. . +..++++++.+++.+..++.++.. ...|
T Consensus 78 ~~~---~--------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~-~~~L 109 (137)
T PF00005_consen 78 ENE---S--------------------------------------------DERIEEVLKKLGLEDLLDRKIGQR-ASSL 109 (137)
T ss_dssp HHH---H--------------------------------------------HHHHHHHHHHTTHGGGTGSBGTSC-GGGS
T ss_pred ccc---c--------------------------------------------cccccccccccccccccccccccc-cchh
Confidence 991 0 012456788899988888888644 4789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCC
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEIST 352 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTs 352 (991)
||||||||+||++|+.+|++++|||||+
T Consensus 110 S~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 110 SGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999996
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=7.3e-27 Score=286.37 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=138.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|+|+.|++|+.++|+|||||||||||++|+|.. .|. +|+| +|+.|+. .....
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~---~g~I----------------~~~~Q~~-~g~~~ 249 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK---NCQI----------------LHVEQEV-VGDDT 249 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC---CCEE----------------EEEeccC-CCCCC
Confidence 34999999999999999999999999999999999974 122 4444 4454432 12334
Q ss_pred CHHHHHHHHHHhc-CC-CchhhhhHHHHHHHHH-----------cCCCCCCCh----HHHHHHH-HhhhhhhhHHHHHHH
Q 001957 242 TVRETLAFSARCQ-GV-GTRYEMLTELARREKA-----------AGIKPDPDI----DVYMKAI-ATEGQEANVITDYYL 303 (991)
Q Consensus 242 TV~E~l~f~~~~~-~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l 303 (991)
|+.|.+.-+..-. .. ................ .+. +..++ +...+.. ...+......++.+|
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGV-DKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-chHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 5544322110000 00 0000000000000000 000 00000 0000000 001123445677889
Q ss_pred HHcCCc-ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 304 KVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 304 ~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
..+||. +..++. +..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ ++|+|++ +
T Consensus 329 ~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviiv-s 398 (718)
T PLN03073 329 AGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVV-S 398 (718)
T ss_pred HHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEE-E
Confidence 999996 334443 4689999999999999999999999999999999999999999999874 4555554 5
Q ss_pred cCCchhHhhcCeEEEecCCeEE-EecCHHHH
Q 001957 383 QPAPETYDLFDDIILLSDGQIV-YQGPRELV 412 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~G~iv-~~G~~~~~ 412 (991)
|+...+.++||+|++|++|+++ |.|+.++.
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 7788899999999999999996 77776643
No 368
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=3.7e-27 Score=284.67 Aligned_cols=127 Identities=40% Similarity=0.702 Sum_probs=118.3
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEEc
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 930 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~in 930 (991)
.+..+.|+|+++.++.+.. ..+++|+||||.++||+++|+|||||||||||||+||||..+| .++|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999998876542 3579999999999999999999999999999999999999986 799999999
Q ss_pred CccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 931 G~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
|++.+..+|++++|||+|+|...|++||||+|.|+|.||+|.+++.++|..-||+|
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~v 149 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEV 149 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999986
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.3e-25 Score=240.63 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=83.5
Q ss_pred HHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 301 YYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 301 ~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
+.++.++|.+ ..+ ..+..|||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ .+.|+
T Consensus 119 ~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~ti 192 (226)
T cd03270 119 GFLVDVGLGYLTLS-----RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTV 192 (226)
T ss_pred HHHHHCCCCccccc-----CccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 4688899975 344 455789999999999999999998 59999999999999999999999999865 46676
Q ss_pred EEEEecCCchhHhhcCeEEEe------cCCeEEEec
Q 001957 378 VISLLQPAPETYDLFDDIILL------SDGQIVYQG 407 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G 407 (991)
|++.|+ ..++ ++||++++| ++|+||++|
T Consensus 193 i~itH~-~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHD-EDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeC-HHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 666554 4555 699999999 999999987
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=2e-25 Score=242.05 Aligned_cols=197 Identities=22% Similarity=0.246 Sum_probs=140.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-----cCcC-----CC--CCee------eEEEECCeeCCCcccc-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-----GKLD-----PT--LKVS------GTVTYNGHDMDEFVPQ- 225 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La-----G~~~-----~~--~~~~------G~I~~nG~~~~~~~~~- 225 (991)
.+-|+|||..|+.|++++|.|+||||||||++.+. ..+. +. -.+. --|.++..++......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998551 1111 11 0011 2356666555321100
Q ss_pred ----------------------------ceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCC
Q 001957 226 ----------------------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277 (991)
Q Consensus 226 ----------------------------~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (991)
..+.|..++...+..|||.|++.|......
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~---------------------- 145 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK---------------------- 145 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh----------------------
Confidence 012234444444567777777777543210
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCC
Q 001957 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTG 353 (991)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsG 353 (991)
......+|+.+||.. ..+ +..+.||||||||+.||++|+.+ |++++|||||+|
T Consensus 146 ------------------~~~~~~~L~~vgL~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsg 202 (261)
T cd03271 146 ------------------IARKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTG 202 (261)
T ss_pred ------------------HHHHHHHHHHcCCchhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCC
Confidence 012345788999976 344 44568999999999999999996 799999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCH
Q 001957 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPR 409 (991)
Q Consensus 354 LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~ 409 (991)
||+.....+++.|+++.+ .+.|+|++.|+ ...+ +.+|+++.| .+|+++++|++
T Consensus 203 LD~~~~~~l~~~L~~l~~-~g~tvIiitH~-~~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 203 LHFHDVKKLLEVLQRLVD-KGNTVVVIEHN-LDVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999999999865 46677666554 4454 579999999 89999999974
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2e-25 Score=217.42 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=151.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee--CC--Ccc-------ccceEEEEe
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--MD--EFV-------PQRTAAYIS 232 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~--~~--~~~-------~~~~~~yv~ 232 (991)
...+|+|||+.++.||+++|=|||||||||||++|-|-|.|+ +|+|.+.-.. ++ ... .++++|||+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 467999999999999999999999999999999999999999 9999986432 11 111 236889999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
|---.+|...-.|-++-.+--+|... +.+......+|..|+|++..
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~----------------------------------~~a~~~a~~Ll~rLnlperL 145 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPR----------------------------------EVARAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 97666777666665554443333321 11122344578889988643
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
=. -.+.+.||||+|||.|||.++.+-+||+|||||+.||..++.-+++.|++. + ..++.++-|-|+.+--...+
T Consensus 146 W~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-K-a~GaAlvGIFHDeevre~va 219 (235)
T COG4778 146 WS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-K-ARGAALVGIFHDEEVREAVA 219 (235)
T ss_pred hc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-H-hcCceEEEeeccHHHHHHHh
Confidence 22 235689999999999999999999999999999999999999999999984 4 46788888888877777889
Q ss_pred CeEEEecC
Q 001957 393 DDIILLSD 400 (991)
Q Consensus 393 D~vilL~~ 400 (991)
||++-+..
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99988753
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=1e-24 Score=228.51 Aligned_cols=167 Identities=15% Similarity=0.191 Sum_probs=125.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC------CCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT------LKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~------~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
+++++.+++| +++|+|||||||||||++|+|.+.+. ....|++.++|++.......+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 99999999999999999999987553 122457888888765433357899999987665
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|... .. ..++++++. .+..+ ..+.
T Consensus 89 ------~~~~-----~~-------------------------------------~~~~~~l~~---~~~~~-----~~~~ 112 (197)
T cd03278 89 ------YSII-----SQ-------------------------------------GDVSEIIEA---PGKKV-----QRLS 112 (197)
T ss_pred ------eeEE-----eh-------------------------------------hhHHHHHhC---CCccc-----cchh
Confidence 2110 00 012223333 23333 3456
Q ss_pred CCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++.+ +.++|++ +|.... .+.+|+++.+
T Consensus 113 ~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIii-tH~~~~-~~~~d~v~~~ 188 (197)
T cd03278 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVI-THRKGT-MEAADRLYGV 188 (197)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEE-ECCHHH-HhhcceEEEE
Confidence 89999999999999986 57799999999999999999999999999753 4565555 455544 5789999999
Q ss_pred cC
Q 001957 399 SD 400 (991)
Q Consensus 399 ~~ 400 (991)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 63
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.6e-25 Score=219.01 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=163.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (991)
-|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.++..... .|..+|..|+..-.+.|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 36778999999999999999999999999999999875 8999999999865432 3667999999888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
...|.+.- + + +.....++++...++|++... +++.+
T Consensus 90 ~~YL~L~q----P---------------------~--------------~~~a~~i~~i~~~L~l~DKL~-----Rs~~q 125 (248)
T COG4138 90 WHYLTLHQ----P---------------------D--------------KTRTELLNDVAGALALDDKLG-----RSTNQ 125 (248)
T ss_pred hhhhhhcC----c---------------------h--------------HHHHHHHHHHHhhhcccchhh-----hhhhh
Confidence 99887642 1 0 001123567788899976654 56679
Q ss_pred CChhHhHHHHHHHHHhc-----C--CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 324 ISGGQKKRVTTGEMMVG-----P--ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~-----~--p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
|||||-|||-+|-..+. | .++|+||||-++||....-.+-..|.+++. .|.++|++ .|+...+.+.+|++.
T Consensus 126 LSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims-~HDLNhTLrhA~~~w 203 (248)
T COG4138 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMS-SHDLNHTLRHAHRAW 203 (248)
T ss_pred cCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEe-ccchhhHHHHHHHHH
Confidence 99999999999966542 2 468999999999999999999999999986 57777776 578999999999999
Q ss_pred EecCCeEEEecCHHHHH
Q 001957 397 LLSDGQIVYQGPRELVL 413 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (991)
+|+.|++..+|.+++++
T Consensus 204 LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 204 LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHhcCeEEeecchhhhc
Confidence 99999999999999986
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=247.24 Aligned_cols=189 Identities=28% Similarity=0.345 Sum_probs=151.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lT 242 (991)
.+.+++++|+.|.+|+.++|+||||+|||||||+|+|...|. +|+|.+.- .-.+||..|+. .+.++.|
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~--------~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE--------TVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC--------ceEEEEEEehhhhcCccCc
Confidence 367999999999999999999999999999999999999987 99998752 23589999985 4457889
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCccc
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMI 321 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~ 321 (991)
+.|++.-...-. .+..+...|..++++.- ..+ .+
T Consensus 403 ~~d~l~~~~~~~----------------------------------------~e~~~r~~L~~f~F~~~~~~~-----~v 437 (530)
T COG0488 403 VLEELSEGFPDG----------------------------------------DEQEVRAYLGRFGFTGEDQEK-----PV 437 (530)
T ss_pred HHHHHHhhCccc----------------------------------------cHHHHHHHHHHcCCChHHHhC-----ch
Confidence 998886432100 01123456888888642 333 44
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
+.||||||.||.+|..++.+|.+|+|||||+.||..+...+-+.|.+. .+|+|++ +|++..+-.++++++++.+
T Consensus 438 ~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~V-SHDr~Fl~~va~~i~~~~~- 511 (530)
T COG0488 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLV-SHDRYFLDRVATRIWLVED- 511 (530)
T ss_pred hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEE-eCCHHHHHhhcceEEEEcC-
Confidence 689999999999999999999999999999999999999999999874 4666664 5788999999999999998
Q ss_pred eEE-EecCHHHHHH
Q 001957 402 QIV-YQGPRELVLE 414 (991)
Q Consensus 402 ~iv-~~G~~~~~~~ 414 (991)
++. +.|..++..+
T Consensus 512 ~~~~~~g~y~~y~~ 525 (530)
T COG0488 512 KVEEFEGGYEDYLE 525 (530)
T ss_pred ceeEcCCCHHHHHH
Confidence 554 4477666543
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.3e-23 Score=241.24 Aligned_cols=204 Identities=21% Similarity=0.400 Sum_probs=162.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc----ceEEEEecC---CCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQH---DNHIG 239 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~---d~~~~ 239 (991)
-++||||++++||+++|-|--|||+|-|+++|.|..++. +|+|.+||+++.-..++ .-++||+.+ +-++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 478999999999999999999999999999999987776 99999999998765443 468999965 67899
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccC
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (991)
.++|++|+.++. +....... .+. ..+....++...+.|++.. ..+
T Consensus 351 ~~sI~~Ni~l~~-l~~~~~~~-~i~---------------------------~~~e~~~~~~~~~~l~Ik~~s~~----- 396 (500)
T COG1129 351 DMSIAENITLAS-LRRFSRRG-LID---------------------------RRKERALAERYIRRLRIKTPSPE----- 396 (500)
T ss_pred CCcHHHheehHh-hhhhcccc-ccC---------------------------hHHHHHHHHHHHHhcCcccCCcc-----
Confidence 999999999982 22110000 000 0011234566777888753 223
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
..+..||||.+|+|.||+.|..+|++|||||||.|.|.-+..+|.+.|++++. .|.++|+ ++...+|+..+||||+||
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~-iSSElpEll~~~DRIlVm 474 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILM-ISSELPELLGLSDRILVM 474 (500)
T ss_pred chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEE-EeCChHHHHhhCCEEEEE
Confidence 34568999999999999999999999999999999999999999999999997 3555444 556899999999999999
Q ss_pred cCCeEEEecCH
Q 001957 399 SDGQIVYQGPR 409 (991)
Q Consensus 399 ~~G~iv~~G~~ 409 (991)
++|+++..=+.
T Consensus 475 ~~Gri~~e~~~ 485 (500)
T COG1129 475 REGRIVGELDR 485 (500)
T ss_pred ECCEEEEEecc
Confidence 99999875443
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.8e-23 Score=226.58 Aligned_cols=185 Identities=21% Similarity=0.286 Sum_probs=125.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----------------CCCCCeee--------EEEECCeeC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----------------DPTLKVSG--------TVTYNGHDM- 219 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~----------------~~~~~~~G--------~I~~nG~~~- 219 (991)
..++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+.
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCCc
Confidence 45788887 7899999999999999999998432 222 33 555655321
Q ss_pred ---C--CccccceEEEEecCCCCCC-CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhh
Q 001957 220 ---D--EFVPQRTAAYISQHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQ 293 (991)
Q Consensus 220 ---~--~~~~~~~~~yv~Q~d~~~~-~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (991)
. +...++.++|++|+..+++ ..|..|...+...+ +...... ..+.+
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~-----------~~~~~---------------- 138 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNP-----------YYIVP---------------- 138 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCC-----------cEEEE----------------
Confidence 1 1223466888888766666 46776665554433 2210000 00000
Q ss_pred hhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
.+.+.+.+++....+ ..++.||||||||++||++|+ .+|++++|||||+|||+.++..+++.|+++
T Consensus 139 -----qg~i~~l~~l~~~~~-----~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 139 -----QGKINSLTNMKQDEQ-----QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred -----cCchHHhhhcccccc-----ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 011233444543333 345689999999999999996 468999999999999999999999999987
Q ss_pred hhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 370 IHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 370 ~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+ +++|+++||. +++.+++|++++|.
T Consensus 209 ~~---~~~ii~~~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 209 SD---GAQFITTTFR-PELLEVADKFYGVK 234 (243)
T ss_pred hC---CCEEEEEecC-HHHHhhCCEEEEEE
Confidence 43 3556666665 67889999999985
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=6.2e-24 Score=225.05 Aligned_cols=185 Identities=15% Similarity=0.224 Sum_probs=132.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
..++|+++++ ++++|+||||||||||+++|.-. +|.+.... ..+.++|++|+...++.+|+
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~-~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKM-RQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHh-hhhhHHHHhcCCCCCCCCce
Confidence 4568999987 89999999999999999999722 23322211 12467888988888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+|.+.+..+..+.. .+ ...++..... ......+++++.++|++..++.+ +.
T Consensus 77 ~~~~~~~~~~~~~~----~l-------~~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~-----~~ 127 (212)
T cd03274 77 CSVEVHFQEIIDKP----LL-------KSKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNI-----SN 127 (212)
T ss_pred EEEEEEEEeCCCHH----HH-------HHCCcCCCCC-------------ceEEcCCcEEEeeccccccccch-----hh
Confidence 99887765432210 00 0001100000 00000134567788887777654 57
Q ss_pred CChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 324 ISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 324 LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+|+|||||++||++++ .+|++++|||||+|||+.+...+.+.|+++. .++++|+.+|+ +++.++||++++|+
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~--~~~~~~~d~v~~~~ 203 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLR--NNMFELADRLVGIY 203 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECc--HHHHHhCCEEEEEE
Confidence 9999999999999996 3689999999999999999999999999974 34666666654 58899999999996
Q ss_pred C
Q 001957 400 D 400 (991)
Q Consensus 400 ~ 400 (991)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 3
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=2.3e-22 Score=212.02 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=121.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHh----cCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-----CCCCC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALA----GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-----NHIGE 240 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~La----G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-----~~~~~ 240 (991)
..++.+.+| +++|+|||||||||||++|. |...++ +|.+..+...+.....+..+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 344567788 99999999999999999995 887776 565552222233333346788999876 33445
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||.|++.+... + .++..+ ++.
T Consensus 91 ~~~~~~~~~~~~-----------------~---------------------------~~~~~~--------------~~~ 112 (204)
T cd03240 91 LAILENVIFCHQ-----------------G---------------------------ESNWPL--------------LDM 112 (204)
T ss_pred hhHhhceeeech-----------------H---------------------------HHHHHH--------------hcC
Confidence 688888765310 0 001111 244
Q ss_pred cCCCChhHhHH------HHHHHHHhcCCcEeEEeCCCCCCCHHHHH-HHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 321 IRGISGGQKKR------VTTGEMMVGPALALFMDEISTGLDSSTTF-QIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 321 ~~~LSGGqrqR------vsia~~L~~~p~vLllDEPTsGLD~~t~~-~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
++.||+||||| +++|++++.+|+++++||||++||+.++. .+.+.|+++.+..+.++|++.|+ . +....+|
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~-~-~~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD-E-ELVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec-H-HHHhhCC
Confidence 57899999996 78899999999999999999999999999 99999998865336677776665 3 3457899
Q ss_pred eEEEecC
Q 001957 394 DIILLSD 400 (991)
Q Consensus 394 ~vilL~~ 400 (991)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999953
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=2.5e-22 Score=218.68 Aligned_cols=183 Identities=18% Similarity=0.229 Sum_probs=127.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe-eCCCc-----cccceEEEEecCC---------CCCCCCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-DMDEF-----VPQRTAAYISQHD---------NHIGEMT 242 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~-~~~~~-----~~~~~~~yv~Q~d---------~~~~~lT 242 (991)
..+++|+|||||||||||++|++.+.+. ..|++.+.|. ++-.. .....+.+++|++ ...+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998764 1457777766 32111 1124788999984 3456789
Q ss_pred HHHHHHHHHHhcC-CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc-------
Q 001957 243 VRETLAFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (991)
Q Consensus 243 V~E~l~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (991)
|.+++.+...... ...+. .....++.+|+.+||......
T Consensus 103 V~r~I~~~~~~~~~in~~~---------------------------------~~~~~v~~~L~~vgL~~~~~~~~i~Qg~ 149 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHR---------------------------------AQQQRVQDLFQSVQLNVNNPHFLIMQGR 149 (251)
T ss_pred EEEEEEcCCceEEEECCEE---------------------------------eeHHHHHHHHHHcCCCCCCceEEEeehH
Confidence 9988866432211 00000 001224455666666411000
Q ss_pred --------cccCcccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe
Q 001957 315 --------MVGDEMIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 315 --------~vg~~~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
..-+..+..||||||||++||++|+ .+|++++|||||+|||..+...+.+.|+++. .+.++|++.|
T Consensus 150 v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH 227 (251)
T cd03273 150 ITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSL 227 (251)
T ss_pred HHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEEC
Confidence 0112456789999999999999997 6889999999999999999999999999974 3555666554
Q ss_pred cCCchhHhhcCeEEEec
Q 001957 383 QPAPETYDLFDDIILLS 399 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~ 399 (991)
. +++.+.+|+++-+.
T Consensus 228 ~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 228 K--EGMFNNANVLFRTR 242 (251)
T ss_pred C--HHHHHhCCEEEEEE
Confidence 4 68889999998875
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=226.17 Aligned_cols=180 Identities=24% Similarity=0.395 Sum_probs=139.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
..|++.++.++||+-+.|.||||||||||+++|+|+-+-. +|+|.+- ....+-|+||.+. +|..|.||
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P--------~~~~~lflpQ~PY-~p~GtLre 474 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP--------ADSALLFLPQRPY-LPQGTLRE 474 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC--------CCCceEEecCCCC-CCCccHHH
Confidence 6899999999999999999999999999999999999876 7887653 2345789999765 66779999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc-CcccCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG-DEMIRGI 324 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg-~~~~~~L 324 (991)
-|.+....... .+..+.++|...||++..+..=+ ++.-+-|
T Consensus 475 ~l~YP~~~~~~--------------------------------------~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vL 516 (604)
T COG4178 475 ALCYPNAAPDF--------------------------------------SDAELVAVLHKVGLGDLAERLDEEDRWDRVL 516 (604)
T ss_pred HHhCCCCCCCC--------------------------------------ChHHHHHHHHHcCcHHHHHHHhccCcHhhhc
Confidence 99885321100 01123456778888776554322 1245679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
|+||||||++||.|+++|+++||||.|++||..+...+.+.|++-. -.++||++.|. +....+.++.+-+.
T Consensus 517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l---p~~tvISV~Hr-~tl~~~h~~~l~l~ 587 (604)
T COG4178 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL---PDATVISVGHR-PTLWNFHSRQLELL 587 (604)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---CCCEEEEeccc-hhhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999999743 35677777654 46667777765553
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=7.6e-21 Score=236.72 Aligned_cols=106 Identities=25% Similarity=0.259 Sum_probs=89.4
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
...|+.+||.. ..+ +.+..||||||||+.||++|+.+| ++++|||||+|||..+...+++.|+++.+ .+.
T Consensus 811 l~~L~~vgL~~l~l~-----~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~ 884 (943)
T PRK00349 811 LQTLVDVGLGYIKLG-----QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGN 884 (943)
T ss_pred HHHHHHCCCCccccc-----CCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45788899975 344 345689999999999999999999 99999999999999999999999999865 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++.|+ ...+ ..+|+|+.| .+|++++.|+++++.
T Consensus 885 TVIiitH~-~~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 885 TVVVIEHN-LDVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEEEecC-HHHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 76666554 4454 689999999 799999999999875
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=9.9e-21 Score=213.25 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=167.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC-CCcccc----ceEEEEecCC---C
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVPQ----RTAAYISQHD---N 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~-~~~~~~----~~~~yv~Q~d---~ 236 (991)
...+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ ....+. .-++|||++. -
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 56899999999999999999999999999999999999877 89999999997 333332 4689999864 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+.+|+.||+.+...-..+-.+... -+. ......+..+++.++...+.-
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~----------------l~~-----------~~i~~~a~~li~~fdVr~~~~--- 397 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGF----------------LDR-----------RAIRKFARELIEEFDVRAPSP--- 397 (501)
T ss_pred cccCccHHHHhhhhhccccccccccc----------------cCH-----------HHHHHHHHHHHHHcCccCCCC---
Confidence 67899999999887532211111000 011 112234556778888763321
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
....+.||||++||+-+||.|..+|++|+..+||.|||..++..|.+.|.+.++ .++.|+.+....+|+++++|+|.
T Consensus 398 -~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~--~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 398 -DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD--AGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred -CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh--cCCEEEEEehhHHHHHHhhheee
Confidence 134578999999999999999999999999999999999999999999999764 45566667789999999999999
Q ss_pred EecCCeEEEecCHHH
Q 001957 397 LLSDGQIVYQGPREL 411 (991)
Q Consensus 397 lL~~G~iv~~G~~~~ 411 (991)
+|++|+++...++++
T Consensus 475 Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 475 VIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeCCceeccccccc
Confidence 999999999888765
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.86 E-value=2.8e-21 Score=205.23 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=116.0
Q ss_pred eceEEEEe-CCeEEEEEcCCCCcHHHHHHHHhcCc-CCCCCeeeEEEEC--CeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 169 KDVSGVIK-PGRLTLLLGPPSSGKTTLLLALAGKL-DPTLKVSGTVTYN--GHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 169 ~~vs~~i~-~Ge~~allGpsGsGKSTLL~~LaG~~-~~~~~~~G~I~~n--G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+ ...+........+++++|++.... ++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~ 92 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE 92 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE
Confidence 45555433 58999999999999999999999644 222 3333332 111111222456888998763211 111
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
... +.. .+.+.+. ..+...++.+..+ ..+..|
T Consensus 93 r~~-------gl~-----------------------~~~~~~~-------------~~l~~g~l~~~l~-----~~~~~l 124 (213)
T cd03279 93 RSR-------GLD-----------------------YDQFTRI-------------VLLPQGEFDRFLA-----RPVSTL 124 (213)
T ss_pred Eec-------CCC-----------------------HHHHHHh-------------hhhhhcchHHHhc-----CCcccc
Confidence 111 110 0000000 0112222322222 445689
Q ss_pred ChhHhHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 325 SGGQKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 325 SGGqrqRvsia~~L~~----------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
|||||||+++|++|+. +|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++ +|....+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~i-tH~~~~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVI-SHVEELKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-ECchHHHHhhCcE
Confidence 9999999999999974 6789999999999999999999999998854 35555555 5566788899999
Q ss_pred EEEecCCe
Q 001957 395 IILLSDGQ 402 (991)
Q Consensus 395 vilL~~G~ 402 (991)
+++|++|.
T Consensus 203 i~~~~~~~ 210 (213)
T cd03279 203 LEVIKTPG 210 (213)
T ss_pred EEEEecCC
Confidence 99999874
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=213.18 Aligned_cols=217 Identities=22% Similarity=0.293 Sum_probs=139.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC-CH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM-TV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l-TV 243 (991)
+.+++|+++.+.+||-.+|+|||||||||+|++|+|...|. .-.+- +....++ ...... +|
T Consensus 88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~---p~~~d--------------~y~ls~e-~~ps~~~av 149 (614)
T KOG0927|consen 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI---PEHID--------------FYLLSRE-IEPSEKQAV 149 (614)
T ss_pred ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC---Ccccc--------------hhhhccc-CCCchHHHH
Confidence 45899999999999999999999999999999999998874 11111 1111111 111122 22
Q ss_pred HHHHHHHHHhcCCCchhhhh-HHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCccc
Q 001957 244 RETLAFSARCQGVGTRYEML-TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (991)
.+-+.+....+ .+.+.. .++.... .+...+.-.+.+.....+.....+..+-.+|..+|.. +.++. ..
T Consensus 150 ~~v~~~~~~e~---~rle~~~E~l~~~~--d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-----~~ 219 (614)
T KOG0927|consen 150 QAVVMETDHER---KRLEYLAEDLAQAC--DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-----KV 219 (614)
T ss_pred HHHhhhhHHHH---HHHHHHHHHHHhhc--cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH-----Hh
Confidence 22222322111 001100 0010000 0000001112222223334444555566677777753 44443 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.++|||+|.|+++||+|..+|.+|+|||||+|||..+..-+-+.|.+. ...+++.+.|+.+.+-..|.+|+-|.++
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~----d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY----DRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc----cCceEEEEecchhhhhhHhhhhheeccc
Confidence 689999999999999999999999999999999999999999988774 2324445567888999999999999999
Q ss_pred e-EEEecCHHHHH
Q 001957 402 Q-IVYQGPRELVL 413 (991)
Q Consensus 402 ~-iv~~G~~~~~~ 413 (991)
+ +.|.|+.+...
T Consensus 296 kl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 296 KLIYYEGNYDQYV 308 (614)
T ss_pred ceeeecCCHHHHh
Confidence 9 56778776543
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=2e-20 Score=241.62 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=88.8
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHh---cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMV---GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~---~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
.|+.+||.+. .+. .+..|||||||||.||++|+ .+|++|+|||||+|||..+...+++.|+++.+ .+.|+
T Consensus 792 ~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TV 865 (1809)
T PRK00635 792 ALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTV 865 (1809)
T ss_pred HHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 6788999764 453 45689999999999999997 69999999999999999999999999999865 46665
Q ss_pred EEEEecCCchhHhhcCeEEEec------CCeEEEecCHHHHHH
Q 001957 378 VISLLQPAPETYDLFDDIILLS------DGQIVYQGPRELVLE 414 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL~------~G~iv~~G~~~~~~~ 414 (991)
|+ ++|....+ +.+|+|++|. +|+++..|+++++..
T Consensus 866 Ii-IsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 866 VI-IEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EE-EeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 55 45566666 8999999996 799999999998753
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=8.1e-20 Score=227.23 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=87.1
Q ss_pred HHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhc---CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVG---PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~---~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..+|+.+||... .+ +..+.|||||||||.||++|+. +|++++|||||+|||+.+...+++.|+++.. .+.
T Consensus 809 l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~ 882 (924)
T TIGR00630 809 LQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGN 882 (924)
T ss_pred HHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 457888899642 33 3456899999999999999997 5999999999999999999999999999865 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELV 412 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~ 412 (991)
|+|++.| ....+ ..+|+|++| .+|++++.|+++++
T Consensus 883 TVIvi~H-~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 883 TVVVIEH-NLDVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEEeC-CHHHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 6666554 44455 679999999 79999999998865
No 387
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.83 E-value=4.8e-21 Score=233.78 Aligned_cols=128 Identities=34% Similarity=0.490 Sum_probs=107.8
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEEcCc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGY 932 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~inG~ 932 (991)
..+.|.++. +++-.+--+ .++++.+|+||||.++||+++||||||||||||||++|+||.+.+ ..+|+|++||.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~ 90 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCR----ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90 (617)
T ss_pred ccchhhhhh-hhccccccc----ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 345677776 554322111 123578999999999999999999999999999999999998765 47899999999
Q ss_pred cCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccce
Q 001957 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKSP 986 (991)
Q Consensus 933 ~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~veev 986 (991)
+.....++|.+|||+|+|.|.|++||||+|.|+|.+|+|.+++.+++...|+++
T Consensus 91 ~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~ 144 (617)
T TIGR00955 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEV 144 (617)
T ss_pred ECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 987678999999999999999999999999999999999999988887776654
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=5.4e-20 Score=184.93 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=165.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCe-eeEEEECCeeCCCcccc-------ceEEEEecC
Q 001957 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ-------RTAAYISQH 234 (991)
Q Consensus 163 ~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~-~G~I~~nG~~~~~~~~~-------~~~~yv~Q~ 234 (991)
+..+++++||+++..||+-+|+|.||||||-..|+|+|..+.+-.+ .-+..+++.++-.+.++ +.+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4467999999999999999999999999999999999997653222 23456666666554443 356789998
Q ss_pred CC--CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 DN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+. +-|.-+|...|--..-......+ ..... .+ .+...-++|..+|+.+..
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgr--WWq~F----------------~W----------rKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGR--WWQRF----------------GW----------RKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccch--Hhhhh----------------ch----------hHHHHHHHHHHhccccHH
Confidence 64 33444443333211100000000 00000 00 111234578899999888
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
|-+ ..++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.++.+|.+.|.++.+ .++|+|+.+.|+...+-+.|
T Consensus 150 DIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ-n~~TtILL~s~Dl~~is~W~ 226 (330)
T COG4170 150 DIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ-NSNTTILLISHDLQMISQWA 226 (330)
T ss_pred HHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc-cCCceEEEEcccHHHHHHHh
Confidence 755 467889999999999999999999999999999999999999999999999865 56777777889999999999
Q ss_pred CeEEEecCCeEEEecCHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~ 414 (991)
|+|-||.-|+-++.++.+++++
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999999874
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.2e-21 Score=206.51 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=143.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcccc---ceEEEEecCCCCCCCCCH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 243 (991)
=+..||++|+.||++-|+|.||||||||+++|.|++.|+ +|+|.+||.+++...+. +..+-|+-|-.+|+. ++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~-ll 413 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ-LL 413 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHh-hh
Confidence 367899999999999999999999999999999999999 99999999999765432 333444442222221 11
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++.. ......++..|+.|.|.+.-.-+=|+-..-.
T Consensus 414 -----------~~e~----------------------------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 414 -----------GPEG----------------------------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred -----------CCcc----------------------------------CCChHHHHHHHHHHHHhhhhcccCCcccccc
Confidence 1100 0001234556667766654333223333457
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||-|||||++.--||+-+.+|+++||=.+--||.-+..+.+.+--+.++.|+|++...| + +.-|..+||++.+.+|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH-D-d~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH-D-DHYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec-C-chhhhhHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999999888877777777666554 3 367899999999999999
Q ss_pred EEecC
Q 001957 404 VYQGP 408 (991)
Q Consensus 404 v~~G~ 408 (991)
++.-+
T Consensus 527 ~e~tg 531 (546)
T COG4615 527 SELTG 531 (546)
T ss_pred eeccc
Confidence 98653
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=2.7e-20 Score=210.28 Aligned_cols=186 Identities=24% Similarity=0.303 Sum_probs=139.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC--CCCCCCCCH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH--DNHIGEMTV 243 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~--d~~~~~lTV 243 (991)
.++++++|-|.+++-++++||||+|||||||++.|.+.|. .|.|.-.-+. ..++-.|+ +.+.-..++
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSHN--------KLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccccc--------cchhhhhhhHhhcCcchhH
Confidence 6999999999999999999999999999999999999998 8888654332 22333443 333334555
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
-|++.=... + ......+..+|..+||..-.++ ...++
T Consensus 473 le~~~~~~~-------------------------~--------------~~~~e~~r~ilgrfgLtgd~q~----~p~~~ 509 (614)
T KOG0927|consen 473 LEFMMPKFP-------------------------D--------------EKELEEMRSILGRFGLTGDAQV----VPMSQ 509 (614)
T ss_pred HHHHHHhcc-------------------------c--------------cchHHHHHHHHHHhCCCccccc----cchhh
Confidence 555432110 0 0011234568999999855443 34679
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||+|||+||..|+.++.+|.+|+|||||+|||..+...+-+.|.++ .+++|+ ++|+.-.+-+.+++|.+..+|.+
T Consensus 510 LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~-vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 510 LSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVL-VSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred cccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceee-eechhhHHHHHHHHhHhhccCce
Confidence 9999999999999999999999999999999999999999999874 334444 35788888899999999987755
Q ss_pred -EEecCHH
Q 001957 404 -VYQGPRE 410 (991)
Q Consensus 404 -v~~G~~~ 410 (991)
.+.|...
T Consensus 585 ~~~~G~i~ 592 (614)
T KOG0927|consen 585 TKWDGDIE 592 (614)
T ss_pred eecCccHH
Confidence 4666544
No 391
>PLN03211 ABC transporter G-25; Provisional
Probab=99.82 E-value=3e-20 Score=226.98 Aligned_cols=132 Identities=32% Similarity=0.557 Sum_probs=108.1
Q ss_pred CcceeecceEEEeeCchhhh--------------hcc--ccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 853 PHSLTFDEVVYSVDMPEEMK--------------VQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k--------------~~g--~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
+.++.|.|++|.++...... ..+ ...+++++|+|||+.++||+++||||||||||||||++|||
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999997653100 000 01124689999999999999999999999999999999999
Q ss_pred cccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 917 Rkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
+...+..+|+|.+||++... ...+.+|||+|+|.+.|.+||+|+|.|+|.+|+|.+++.+++...+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~ 184 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES 184 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 97655579999999998753 345668999999999999999999999999999988887776665554
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=200.55 Aligned_cols=170 Identities=26% Similarity=0.321 Sum_probs=133.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (991)
.|.|..||+++++||||-||||+.++|||.++|+ +|. .. .-.++|=||.-.--...||++-|.-..
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 4556667889999999999999999999999998 776 11 234778888655557899999876554
Q ss_pred HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHH
Q 001957 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (991)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (991)
+-. .+ .+....++++-|.|+...|..| .+|||||.||
T Consensus 427 ~~~-~~-------------------------------------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQR 463 (591)
T COG1245 427 RSA-FG-------------------------------------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQR 463 (591)
T ss_pred hhh-cc-------------------------------------cchhHHhhcCccchHHHHhccc-----ccCCchhHHH
Confidence 321 00 0112234677788888777655 5799999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
|+||.+|..++++.+||||++-||++.+..+-+.+|+.+...++|.++ +.|+..-+--+.|++++..
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v-VdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV-VDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE-EecceehhhhhhceEEEEe
Confidence 999999999999999999999999999999999999998865555555 5777777777889988774
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.3e-19 Score=190.17 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=115.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----ccccceEEEEecCCCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----~~~~~~~~yv~Q~d~~~~~lT 242 (991)
-++++++.+.+| +++|+|||||||||||.+|.-.+... .. ...-|..+.+ -.....+.+++|+.....
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~---~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK---AS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC---cc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 347788888888 88999999999999999997443221 00 0011221111 111245667777654333
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+ ... ... ...++++|+. .+..+ +.++
T Consensus 83 ---~-----~~~----------~~~----------------------------~~~~~~~l~~---~~~~~-----~~~~ 108 (198)
T cd03276 83 ---N-----PLC----------VLS----------------------------QDMARSFLTS---NKAAV-----RDVK 108 (198)
T ss_pred ---C-----cCC----------HHH----------------------------HHHHHHHhcc---ccccC-----Cccc
Confidence 0 000 000 0112334444 34444 3456
Q ss_pred CCChhHhHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhc-cCceEEEEEecCCchhHhhcCeEEE
Q 001957 323 GISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI-NSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L----~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~-~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
.||||||||++||++| +.+|++++|||||+|||..++..+.+.|+++++. .+.++|+.++|...++.++ |+|.+
T Consensus 109 ~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~ 187 (198)
T cd03276 109 TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV 187 (198)
T ss_pred ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE
Confidence 8999999999999999 5899999999999999999999999999997653 1444555566778788776 99999
Q ss_pred ecCCe
Q 001957 398 LSDGQ 402 (991)
Q Consensus 398 L~~G~ 402 (991)
|..|+
T Consensus 188 ~~~~~ 192 (198)
T cd03276 188 FRMKD 192 (198)
T ss_pred EEecC
Confidence 98754
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=3.6e-19 Score=193.47 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=65.3
Q ss_pred cCCCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..||||||||++||++++. +|++++|||||+|||..+...+.+.|+++++ .+.++|++.| . .+..+.+|+++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH-~-~~~~~~~d~i~ 229 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISL-K-EEFFSKADALV 229 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEEC-C-HHHHhhCCeEE
Confidence 37899999999999999985 4899999999999999999999999999864 3566666554 4 57789999999
Q ss_pred Eec
Q 001957 397 LLS 399 (991)
Q Consensus 397 lL~ 399 (991)
+|.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 996
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.77 E-value=5.4e-18 Score=170.41 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=145.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC---ccccceEEEEec---------
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---FVPQRTAAYISQ--------- 233 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~~~~~~~~yv~Q--------- 233 (991)
+++-|+|+.++.|.-++++|.||||||||||+|+|.---. .|.|.++|.+.-. ........|..-
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~a 104 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIA 104 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEeccccccccccc
Confidence 4899999999999999999999999999999999985443 6899999986411 111122334332
Q ss_pred -CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 234 -HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 234 -~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
+-.+...+++ |.+-|+..- .+. .+-|.++++|.++-.
T Consensus 105 gevplq~D~sa-e~mifgV~g---------------------------------------~dp-~Rre~LI~iLDIdl~- 142 (291)
T KOG2355|consen 105 GEVPLQGDISA-EHMIFGVGG---------------------------------------DDP-ERREKLIDILDIDLR- 142 (291)
T ss_pred ccccccccccH-HHHHhhccC---------------------------------------CCh-hHhhhhhhheeccce-
Confidence 1122234444 333343211 001 123556777776532
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
...+.+|-|||+||.|++-|+.+-++|+|||.|--||.-++.++++.|++-+..++.|+|-+ +|--+-.....
T Consensus 143 ------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYA-THIFDGLe~Wp 215 (291)
T KOG2355|consen 143 ------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYA-THIFDGLETWP 215 (291)
T ss_pred ------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEE-eeeccchhhcc
Confidence 23456999999999999999999999999999999999999999999999998766666655 55666777888
Q ss_pred CeEEEecCCeEEEecCHHHHHHH
Q 001957 393 DDIILLSDGQIVYQGPRELVLEF 415 (991)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~~~ 415 (991)
.+++.|+.|+++-.-+.+.+.++
T Consensus 216 thl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 216 THLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hhEEEecCCeeeeccccchhhhh
Confidence 99999999999986666655543
No 396
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=3.9e-19 Score=197.27 Aligned_cols=119 Identities=29% Similarity=0.328 Sum_probs=98.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+-.+.. ++.+|+|||+.|+||+++||||||||||||||++|+|... ..+|+|.++|++..
T Consensus 5 i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 556777755421 3678999999999999999999999999999999999987 36899999998865
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCC-CCHHHHhccccceee
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKVGTKSPRV 988 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~-v~~~~k~~~veev~~ 988 (991)
. ..+++.+|||+|++.+.|.+||+|+|.|.|.+|.++. ...+.-...++++++
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L 126 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL 126 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCC
Confidence 3 4788899999999999999999999999999999774 333344455555543
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=3.1e-18 Score=181.58 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=65.1
Q ss_pred ccCCCChhHhHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc-eEEEEEecCCchhHhhcC-
Q 001957 320 MIRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDLFD- 393 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L----~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~-t~ii~i~q~~~~~~~lfD- 393 (991)
.+..||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|+++.+..+. ++|++ +|+..+..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viii-th~~~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLI-TPKLLPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEE-chhhccCCcccCc
Confidence 4568999999998877554 5899999999999999999999999999998653244 45554 455556667776
Q ss_pred -eEEEecCCe
Q 001957 394 -DIILLSDGQ 402 (991)
Q Consensus 394 -~vilL~~G~ 402 (991)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 398
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=7.9e-18 Score=191.76 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=137.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
+..+.+|+|+.|+.|+-++|.||||||||+||++|+|+-+.. +|.++--...-. +.+-|+||.+. ++..|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~~~-----~~lfflPQrPY-mt~GTL 517 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDGGP-----KDLFFLPQRPY-MTLGTL 517 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccCCC-----CceEEecCCCC-ccccch
Confidence 345889999999999999999999999999999999999876 898875433211 45789999764 566699
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc------cccccc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC------ADTMVG 317 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~------~dt~vg 317 (991)
||.+-|..+--... ....+ +..+..+|+..+|.|. .|+-+-
T Consensus 518 RdQvIYP~~~~~~~------------------~~~~~---------------d~~i~r~Le~v~L~hl~~r~ggld~~~~ 564 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMD------------------SKSAS---------------DEDILRILENVQLGHLLEREGGLDQQVD 564 (659)
T ss_pred hheeeccCcccccc------------------ccCCC---------------HHHHHHHHHHhhhhhHHHHhCCCCchhh
Confidence 99998864211000 00000 0112223333333332 222222
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
-+....||+||+||++.||.+..+|++-||||.||++|......+.+.+++. +++.|++.| +......=|.++-
T Consensus 565 ~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-----giT~iSVgH-RkSL~kfHd~~L~ 638 (659)
T KOG0060|consen 565 WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-----GITFISVGH-RKSLWKFHDYVLR 638 (659)
T ss_pred ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-----CCeEEEecc-HHHHHhhhhEEEE
Confidence 2345679999999999999999999999999999999999999999988862 466777765 5577777888888
Q ss_pred ecC
Q 001957 398 LSD 400 (991)
Q Consensus 398 L~~ 400 (991)
|+.
T Consensus 639 ~~g 641 (659)
T KOG0060|consen 639 MDG 641 (659)
T ss_pred ecC
Confidence 874
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=3.2e-18 Score=180.06 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=68.8
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
..+|+|+||++.|++++ .+|+++++|||++|||+.....+.. .++.+.+ .+.++|++.|+ .++.+++|++++|.+
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~ 165 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVEN 165 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEE
Confidence 46999999999999874 7899999999999999999999974 5676643 46666666553 578899999999999
Q ss_pred CeEEEec
Q 001957 401 GQIVYQG 407 (991)
Q Consensus 401 G~iv~~G 407 (991)
|++++.+
T Consensus 166 g~l~~~~ 172 (200)
T cd03280 166 ASMEFDP 172 (200)
T ss_pred EEEEEec
Confidence 9999874
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=5.2e-17 Score=177.96 Aligned_cols=257 Identities=23% Similarity=0.359 Sum_probs=169.5
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+++...++|+++....-..+.+.+ .|... .+.-.-.+.|++++-..........+| +.+..+++.+ ..
T Consensus 322 eEa~r~i~rf~~~d~~A~~h~L~~--pRyr~--ve~L~~p~~~~~v~k~faS~ld~~~lp---~e~~~IleSF----Gv- 389 (593)
T COG2401 322 EEAKRYIDRFVGEDPMAYPHLLLA--PRYRM--VEKLEGPIKFKNVTKTFASELDIKGLP---NEFQDILESF----GV- 389 (593)
T ss_pred HHHHHHHHHHhccCccccccceec--ccccc--ccccCCccccceeeeeeeeeeecccCC---hHHHHHHHHh----cc-
Confidence 566777788776555444433322 22221 111122356667655443332333333 3333333332 22
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCeeeEEEECCeeCCCccccceEEE
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVPQRTAAY 230 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~~nG~~~~~~~~~~~~~y 230 (991)
..+.....+|+|||+.++||++++|+|+|||||||||++|+|.. .|+ +|.|.+-- ....+.
T Consensus 390 ~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~---sg~v~vp~--------nt~~a~ 458 (593)
T COG2401 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD---SGKVEVPK--------NTVSAL 458 (593)
T ss_pred hheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC---CCceeccc--------cchhhc
Confidence 22345677999999999999999999999999999999999974 344 67665421 123456
Q ss_pred EecC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc
Q 001957 231 ISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309 (991)
Q Consensus 231 v~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 309 (991)
+|-. +.-|..-|+.|++.=- .+ |+ ....++|+..||.
T Consensus 459 iPge~Ep~f~~~tilehl~s~-----tG----------------------D~---------------~~AveILnraGls 496 (593)
T COG2401 459 IPGEYEPEFGEVTILEHLRSK-----TG----------------------DL---------------NAAVEILNRAGLS 496 (593)
T ss_pred cCcccccccCchhHHHHHhhc-----cC----------------------ch---------------hHHHHHHHhhccc
Confidence 6643 4445566777766311 00 11 0124578888886
Q ss_pred ccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhH
Q 001957 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 310 ~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~ 389 (991)
+.. .=-+..+.||-|||.|+.||.++...|.+++.||--+.||..|+..+.+.|.++++..+.|.+++.|+| +-.-
T Consensus 497 DAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~ 572 (593)
T COG2401 497 DAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGN 572 (593)
T ss_pred hhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHh
Confidence 532 222456789999999999999999999999999999999999999999999999987777777766554 4555
Q ss_pred hh-cCeEEEecCCeEE
Q 001957 390 DL-FDDIILLSDGQIV 404 (991)
Q Consensus 390 ~l-fD~vilL~~G~iv 404 (991)
.+ =|.++++.=|.+.
T Consensus 573 AL~PD~li~vgYg~v~ 588 (593)
T COG2401 573 ALRPDTLILVGYGKVP 588 (593)
T ss_pred ccCCceeEEeeccccc
Confidence 56 5888888766543
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.5e-17 Score=180.39 Aligned_cols=180 Identities=26% Similarity=0.353 Sum_probs=134.1
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC--CCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH--DNH 237 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~--d~~ 237 (991)
.....+.++++++|-|.--.-+||+||||.||||||++|.|.++|+ .|+..-|- +-.+|+..|+ ..+
T Consensus 595 gy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh--------rL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 595 GYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH--------RLRIGWFDQHANEAL 663 (807)
T ss_pred cCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc--------eeeeechhhhhHHhh
Confidence 4445677899999999999999999999999999999999999998 88765442 2357877776 344
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
-.+-|.-|.|.-...+ .++ .....|-.+||...++|+-
T Consensus 664 ~~Eetp~EyLqr~FNl-----pyq------------------------------------~ARK~LG~fGL~sHAHTik- 701 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNL-----PYQ------------------------------------EARKQLGTFGLASHAHTIK- 701 (807)
T ss_pred ccccCHHHHHHHhcCC-----ChH------------------------------------HHHHHhhhhhhhhccceEe-
Confidence 4556666665432211 010 1123477899999999863
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+..||||||-||++|+..++.|+||||||||+.||..+...+-+.|++. .+.+|+.. |+...+.+---.++|
T Consensus 702 ---ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~Vs-HDeRLi~eT~C~LwV 773 (807)
T KOG0066|consen 702 ---IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVS-HDERLIVETDCNLWV 773 (807)
T ss_pred ---eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEe-cccceeeecCceEEE
Confidence 5789999999999999999999999999999999999999999999874 34444444 444444444445555
Q ss_pred ecC
Q 001957 398 LSD 400 (991)
Q Consensus 398 L~~ 400 (991)
+.+
T Consensus 774 vE~ 776 (807)
T KOG0066|consen 774 VEN 776 (807)
T ss_pred Ecc
Confidence 544
No 402
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.72 E-value=2e-16 Score=199.60 Aligned_cols=88 Identities=36% Similarity=0.447 Sum_probs=80.8
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc----ccccceeeEEeccCCCCCCCCH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFVTI 958 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~----~tf~r~~GY~eQ~Dih~p~~TV 958 (991)
+++++|+.|+||+|.+|.|+|||||||++++|.|... +.+|++.|+|+.... ...++.+|||||.|++++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 8999999999999999999999999999999999987 678999999999652 2267889999999999999999
Q ss_pred HHHHHhhhhccCCC
Q 001957 959 YESLLFSAWLRLSP 972 (991)
Q Consensus 959 rEsL~fsA~LRlp~ 972 (991)
||+|+|.|+||.-+
T Consensus 658 rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 658 REHLEFYARLRGLP 671 (885)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999744
No 403
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2e-17 Score=186.34 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=127.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecC-CCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTV 243 (991)
+.+|++-++++..|+-.+|+|+||+||||||++|+. |.| .|.++.+. ..-.|++-. +.+... |.
T Consensus 93 k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v--~~f~veqE---~~g~~t~~~~~~l~~D-~~ 157 (582)
T KOG0062|consen 93 KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQV--SGFHVEQE---VRGDDTEALQSVLESD-TE 157 (582)
T ss_pred hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCc--CccCchhh---eeccchHHHhhhhhcc-HH
Confidence 459999999999999999999999999999999997 111 11121110 111233211 112222 22
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
++.+... +++- ..+.....+.+.+|..+|.+.-.- ....+.
T Consensus 158 ~~dfl~~-------------------e~~l----------------~~~~~l~ei~~~~L~glGFt~emq----~~pt~s 198 (582)
T KOG0062|consen 158 RLDFLAE-------------------EKEL----------------LAGLTLEEIYDKILAGLGFTPEMQ----LQPTKS 198 (582)
T ss_pred HHHHHHh-------------------hhhh----------------hccchHHHHHHHHHHhCCCCHHHH----hccccc
Confidence 2222211 0000 000011223445788888865332 245678
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
+|||-|-|+++||||..+|++|+|||||+.||..+-.-+-+.|+.+ . .+++++.|++...-..|.+||.+++=++
T Consensus 199 lSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~-~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 199 LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----K-ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----C-ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999863 2 4455567899999999999999987665
Q ss_pred -EEecCHHH
Q 001957 404 -VYQGPREL 411 (991)
Q Consensus 404 -v~~G~~~~ 411 (991)
.|.|.-++
T Consensus 274 ~~YkGN~~~ 282 (582)
T KOG0062|consen 274 DYYKGNYSQ 282 (582)
T ss_pred hhhcCcHHH
Confidence 45665544
No 404
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.71 E-value=3.1e-18 Score=179.68 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHhhccccCCCCccccccchhhHHHHHHHHHHHhHHHHH-HHHh
Q 001957 503 ELLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEI-SMTI 580 (991)
Q Consensus 503 ~~~~~~~~R~~l~~~R~~~~~-~~r~~~~~~~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~-~~~~ 580 (991)
+|++++++|+++..+||+... +..++..++.+++++.+|.+.+...+ +..+.|.+++.+...++...... ....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQD----GFNRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccceeeehhhHHhhhhhcccchhhhh
Confidence 478999999999999999877 89999999999999999998762221 22345666666665554444443 4455
Q ss_pred hcchhhhhhhccCccChhhHHHHHHHHHhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001957 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660 (991)
Q Consensus 581 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~i~~~i~Yf~~Gl~~~~~~ff~~~l~~~~~~~~~~sl~~~i~a~ 660 (991)
.++..+.+++....|++++|.+++.+.+++..++..+++.++.|++.|++.+ +|+.+++.+.+...++.+++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 6888999999999999999999999999999999999999999999999988 77888888888888899999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccccCcCCchhhhHHhHhhcHHHHHHHHHHhhhh
Q 001957 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (991)
Q Consensus 661 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef 716 (991)
+++...++.+.+++..++++++|.++|.+.+|+|++|+.|+||++|+.+++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5e-17 Score=183.14 Aligned_cols=182 Identities=23% Similarity=0.285 Sum_probs=142.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+++.+++..++.-.-.+++|+||+||||+++++.|.+.|. .|.+.+++ +..++|-.|+..-+..+.|-+
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~ 446 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNA 446 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc--------cceecchhHhhhhHHHHHhHH
Confidence 5888888888888899999999999999999999998887 78776653 567899999866555555543
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
- .+..++. +| + ........+..+||+.-. ....+.+||
T Consensus 447 v-d~~~~~~-pG-----------------------------------~-~~ee~r~hl~~~Gl~g~l----a~~si~~LS 484 (582)
T KOG0062|consen 447 V-DFMEKSF-PG-----------------------------------K-TEEEIRRHLGSFGLSGEL----ALQSIASLS 484 (582)
T ss_pred H-HHHHHhC-CC-----------------------------------C-CHHHHHHHHHhcCCCchh----hhccccccC
Confidence 2 3322222 11 0 111234468899997421 123467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
||||=||++|.+...+|.+|+|||||+.||-.+-..+.+.|+.+ .|+.++| +|+.+.+-.+|+.+.+..+|++.-
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~V--SHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLV--SHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEE--ECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999999999985 4554443 478889999999999999999964
No 406
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.1e-17 Score=170.16 Aligned_cols=117 Identities=27% Similarity=0.532 Sum_probs=95.6
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC-CeeeEEEEEcCcc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYP 933 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~-G~i~G~I~inG~~ 933 (991)
+++|+||+|.|+.+. +++.+|+|+|+.++||+++||+|+||||||||+++|+|.... +..+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 589999999997652 235789999999999999999999999999999999998653 3578999999998
Q ss_pred CCc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc---CCCCCCHHHHh
Q 001957 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR---LSPEVDSETRK 980 (991)
Q Consensus 934 ~~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR---lp~~v~~~~k~ 980 (991)
... ...++.+|||+|++.+.|.+||+|+|.|.+.++ .+.+.|..+|+
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~q 125 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERK 125 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHH
Confidence 542 246778999999999999999999999987653 23444544443
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.67 E-value=6e-16 Score=159.56 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=63.3
Q ss_pred CChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 324 ISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 324 LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
||||||||+++|++++ .+|+++++|||++|||+.....+.+.|+++++ .+.++|++.|. .+....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~--~~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLK--KEMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECC--HHHHhhCCeEEEEE
Confidence 9999999999999986 68999999999999999999999999999865 35566665544 35667899999997
Q ss_pred C
Q 001957 400 D 400 (991)
Q Consensus 400 ~ 400 (991)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=2.5e-16 Score=174.87 Aligned_cols=96 Identities=25% Similarity=0.247 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 298 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
..|++.+.|+|.+..|.-| ..|||||-|||+||.+++++++++|+|||||-||...+....+.++++++. + ..
T Consensus 193 ~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~-k~ 265 (591)
T COG1245 193 KFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-G-KY 265 (591)
T ss_pred cHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-C-Ce
Confidence 4678899999998887554 689999999999999999999999999999999999999999999999863 4 44
Q ss_pred EEEEecCCchhHhhcCeEEEecC
Q 001957 378 VISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|+.+.|+..-+--++|-|.++..
T Consensus 266 ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 266 VIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred EEEEechHHHHHHhhheeEEEec
Confidence 55567888777788999988863
No 409
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=8.5e-17 Score=179.49 Aligned_cols=114 Identities=25% Similarity=0.343 Sum_probs=94.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+=.+ | ...+|+|||+.+++|+.++|+|||||||||||.+|||-.+ ..+|+|.|+|.+.
T Consensus 5 ~l~i~~v~k~y---------g----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF---------G----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec---------C----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 56788877443 2 3578999999999999999999999999999999999998 5689999999996
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
.. .-.+|-+|+|.|+-+++|++||+|++.|-=+ +....++++...-|+|
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e 119 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK--VRKKLKKAEIKARVEE 119 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHH
Confidence 63 4579999999999999999999999999755 4444555555555554
No 410
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.5e-16 Score=167.33 Aligned_cols=99 Identities=26% Similarity=0.410 Sum_probs=87.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.+++|++++.. ..+|+|||+.+.+|+.+||+|||||||||||++|||-.+ ..+|+|.++|.|.
T Consensus 3 ~l~i~~v~~~f~~-------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFGG-------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeCc-------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 3567788877632 567999999999999999999999999999999999987 5689999999997
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+ .=.+..|||.|+|.++|-.||+|+..|...++.
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 3 335678999999999999999999999988885
No 411
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.3e-16 Score=173.84 Aligned_cols=86 Identities=31% Similarity=0.420 Sum_probs=80.1
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.|+|||..++.|+.++|+|||||||||||++|||=.. ..+|+|+|+|...+. .--.|-+|+|.|+.+++|++||+|+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 7999999999999999999999999999999999987 578999999999774 4457999999999999999999999
Q ss_pred HHhhhhccC
Q 001957 962 LLFSAWLRL 970 (991)
Q Consensus 962 L~fsA~LRl 970 (991)
+.|.-++|.
T Consensus 96 iaf~Lk~~~ 104 (338)
T COG3839 96 IAFGLKLRG 104 (338)
T ss_pred hhhhhhhCC
Confidence 999999985
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=3.5e-16 Score=166.98 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=110.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEE-EEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (991)
..+.+|+++.+++|++++|.||||+||||||+.++-.. ....+| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV---------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH---------------------HHHHhCCCcCcccEEEe----
Confidence 46899999999999999999999999999999988210 001111 3433221111
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
..+.++..+|+++.. .++
T Consensus 72 ------------------------------------------------------~~~~il~~~~l~d~~--------~~~ 89 (222)
T cd03285 72 ------------------------------------------------------IVDCILARVGASDSQ--------LKG 89 (222)
T ss_pred ------------------------------------------------------ccceeEeeeccccch--------hcC
Confidence 012234455554322 357
Q ss_pred CChhHhHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 324 LSGGqrqRvsia~~L--~~~p~vLllDEP---TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+|.|+++++.+++++ +.+|++++|||| |++||.......+ ++.+.+..+.++|+++| ..++.+++|++..+
T Consensus 90 lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i--l~~l~~~~~~~vlisTH--~~el~~~~~~~~~i 165 (222)
T cd03285 90 VSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI--AEYIATQIKCFCLFATH--FHELTALADEVPNV 165 (222)
T ss_pred cChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH--HHHHHhcCCCeEEEEec--hHHHHHHhhcCCCe
Confidence 999999999999999 899999999999 9999998775433 23333334667777655 37889999999999
Q ss_pred cCCeEEEecC
Q 001957 399 SDGQIVYQGP 408 (991)
Q Consensus 399 ~~G~iv~~G~ 408 (991)
.+|++.+.+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999988764
No 413
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.62 E-value=1.2e-15 Score=171.54 Aligned_cols=176 Identities=21% Similarity=0.319 Sum_probs=120.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+...++|.|+||--++|+||||||||+|.++|+|+-+- |+|+-.. ++...+-|+||.+..- -.|.|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~--P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSI--PRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeec--CCCcceEeccCCCccC-cCccc
Confidence 3488999999999999999999999999999999999875 4444322 2234589999987544 66778
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC----cc
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD----EM 320 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~----~~ 320 (991)
|.+-+.- +..+ +.+ .++ +| ...+.+|+++.|++.+..-.|= +.
T Consensus 563 DQIIYPd------S~e~----~~~----kg~-~d------------------~dL~~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 563 DQIIYPD------SSEQ----MKR----KGY-TD------------------QDLEAILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred ceeecCC------cHHH----HHh----cCC-CH------------------HHHHHHHHHhhHHHHHHhccChhhhccH
Confidence 7776632 1111 111 111 11 1123345555555443322221 12
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
-.-||||||||+.+||+.-+.|+.-+|||.||+........|.+..+. . +..+++++|. +..+.+
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~-gi~llsithr-pslwk~ 674 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----A-GISLLSITHR-PSLWKY 674 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----c-CceEEEeecC-ccHHHH
Confidence 346999999999999999999999999999999999888888887765 3 4556665543 344443
No 414
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.62 E-value=8.5e-16 Score=156.22 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=63.0
Q ss_pred CCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+||+||+||+++|++|+. +|+++++|||++|||+.....+.+.+.+.... +.++|+++| .. +..+.+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH-~~-~~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITH-LP-ELAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcC-CH-HHHHhhhhEEEE
Confidence 499999999999999986 78999999999999999999999999987654 556666544 33 456789999998
Q ss_pred cC
Q 001957 399 SD 400 (991)
Q Consensus 399 ~~ 400 (991)
..
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 53
No 415
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=3.4e-15 Score=164.91 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCChhHhHHHHHHHHHhc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 323 GISGGQKKRVTTGEMMVG----PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~----~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
.||||||||+++|++++. +|+++++||||+|||+.+...+++.|+++.+ +.++|++.|+| .+...+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~--~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLP--QVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechH--HHHHhcCcEEEE
Confidence 599999999999986543 9999999999999999999999999998753 56666666654 367899999999
Q ss_pred cCCe
Q 001957 399 SDGQ 402 (991)
Q Consensus 399 ~~G~ 402 (991)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8753
No 416
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.3e-14 Score=171.14 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=94.0
Q ss_pred HHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||.-. .+| +...+|||||.|||-+|..|.... .+++|||||+||-..-..++++.|.++.. .|.|+|
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi 879 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI 879 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4666777532 234 455689999999999999998776 89999999999999999999999999986 455655
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 435 (991)
+ |.|.. ++...+|.|+=| ..|+||..|+|+++.+ +| ..-++.||..
T Consensus 880 V-IEHNL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~ 931 (935)
T COG0178 880 V-IEHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKK 931 (935)
T ss_pred E-Eeccc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHH
Confidence 5 55555 788999999998 3589999999999974 44 4455666554
No 417
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.61 E-value=1.4e-15 Score=170.24 Aligned_cols=103 Identities=26% Similarity=0.302 Sum_probs=88.6
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
...+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+|+|+
T Consensus 5 ~~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~ 69 (306)
T PRK13537 5 VAPIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGE 69 (306)
T ss_pred CceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCE
Confidence 34578999987763 1468999999999999999999999999999999999865 46899999999
Q ss_pred cCCc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 933 PKKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 933 ~~~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+... ...++.+|||+|+..+.+.+||+|+|.|.|.++.
T Consensus 70 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 70 PVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred ecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 8542 3467889999999999999999999999888763
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.61 E-value=1.5e-15 Score=159.44 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=98.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..|++|+++.. |++++|+|||||||||||++|+|... +...|.++.. ..+++|.+.+++.+|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec------CccCcccceEEEeccch
Confidence 35889887775 79999999999999999999998642 1123444321 13666778889999999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++.++.... . .++ ..+.++++.+++
T Consensus 78 d~l~~~~s~~----~----~e~------------------------------~~~~~iL~~~~~---------------- 103 (199)
T cd03283 78 DDLRDGISYF----Y----AEL------------------------------RRLKEIVEKAKK---------------- 103 (199)
T ss_pred hccccccChH----H----HHH------------------------------HHHHHHHHhccC----------------
Confidence 9998754210 0 000 113344555442
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHhhccCceEEEEEecCCchhHhh--cCeEEEe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDL--FDDIILL 398 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~-~L~~l~~~~~~t~ii~i~q~~~~~~~l--fD~vilL 398 (991)
.+|+++++|||++|||+.....+.. .++.+.+ .+.++|+++| ....+..+ .++|-.+
T Consensus 104 ---------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH-~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 ---------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTH-DLELADLLDLDSAVRNY 163 (199)
T ss_pred ---------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcC-cHHHHHhhhcCCCeEEE
Confidence 6899999999999999999987754 5777654 4566666655 44455444 4455444
No 419
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.59 E-value=1.8e-15 Score=172.34 Aligned_cols=100 Identities=25% Similarity=0.340 Sum_probs=86.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|||... ..+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377889987763 1357999999999999999999999999999999999976 5689999999886
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|....|
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 42 335788999999999999999999999987654
No 420
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.59 E-value=1.6e-14 Score=187.58 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=88.3
Q ss_pred HHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE
Q 001957 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA 377 (991)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ 377 (991)
..|..+||.... .| +....|||||.||+-+|..|..+ +.+++|||||+||++.....+++.|+++.. .|.|+
T Consensus 1681 ~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tv 1755 (1809)
T PRK00635 1681 QALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSV 1755 (1809)
T ss_pred HHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeE
Confidence 467788886532 33 45568999999999999999865 789999999999999999999999999986 56676
Q ss_pred EEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 378 VISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 378 ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
|+.- |+ .++...||.|+=| ..|+||+.|+++++.+
T Consensus 1756 ivie-H~-~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYID-HD-PALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEe-CC-HHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 6654 43 3677779999999 3589999999999964
No 421
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.6e-15 Score=156.99 Aligned_cols=112 Identities=55% Similarity=0.835 Sum_probs=91.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.++.+. .++.+|+|||+.++||+++||+|+||||||||+++|+|.......+|+|.++|++.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 367899998875321 12468999999999999999999999999999999999753234689999999986
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHH
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k 979 (991)
. ..+++.+||++|++.+.+..||+|++.|.+.++ +.|..+|
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~LSgGe~ 114 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---GLSVEQR 114 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh---cCCHHHh
Confidence 5 567788999999998899999999999976654 4444444
No 422
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.6e-15 Score=170.78 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=87.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999998763 1357999999999999999999999999999999999987 5689999999986
Q ss_pred Ccc-cccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~-tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .-+|.+|||+|+..++|++||+|++.|....|.
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 432 235889999999999999999999999877653
No 423
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=2.8e-15 Score=157.63 Aligned_cols=89 Identities=25% Similarity=0.364 Sum_probs=77.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC------cccc-cceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETF-ARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~------~~tf-~r~~GY~eQ~Dih~ 953 (991)
..+|++||+.+++|+++||||||||||||||++|+|--.. .+|.|.|+|.... ...| ++.+||+.|+-.+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 6889999999999999999999999999999999988763 6899999996643 2345 45599999999999
Q ss_pred CCCCHHHHHHhhhhccCC
Q 001957 954 PFVTIYESLLFSAWLRLS 971 (991)
Q Consensus 954 p~~TVrEsL~fsA~LRlp 971 (991)
|.+||+|++..-+.++.-
T Consensus 96 ~~ltv~ENv~lpl~~~~~ 113 (226)
T COG1136 96 PDLTVLENVELPLLIAGK 113 (226)
T ss_pred CCCCHHHHHHhHHHHcCC
Confidence 999999999987766643
No 424
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.58 E-value=3.7e-15 Score=159.82 Aligned_cols=108 Identities=36% Similarity=0.564 Sum_probs=89.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc-CCeeeEEEEEcCccC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 934 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt-~G~i~G~I~inG~~~ 934 (991)
+.|+||.|.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ++..+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45888888774211 13578999999999999999999999999999999999864 234689999999987
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCC
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~ 972 (991)
....+++.+|||+|++...+.+||+|++.|.+..+.+.
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 112 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPR 112 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccc
Confidence 65567788999999998899999999999987766544
No 425
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.9e-15 Score=160.63 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=82.1
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678887763 1357999999999999999999999999999999999865 358999999988542
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
..+++.+|||+|+....|.+||+|+|.|.+..
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 24577899999999889999999999987543
No 426
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.8e-15 Score=161.75 Aligned_cols=88 Identities=31% Similarity=0.445 Sum_probs=79.4
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc---CCc-ccccceeeEEeccCCCCCC
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQ-ETFARISGYCEQNDIHSPF 955 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~---~~~-~tf~r~~GY~eQ~Dih~p~ 955 (991)
....|+|||..++.|+++||.|||||||||||.+|||-.+ ...|.|.+||.. ..+ ..-.|.+|||-|+-+++|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4567999999999999999999999999999999999998 568999999994 322 4568999999999999999
Q ss_pred CCHHHHHHhhhhcc
Q 001957 956 VTIYESLLFSAWLR 969 (991)
Q Consensus 956 ~TVrEsL~fsA~LR 969 (991)
+||.+++.|...+|
T Consensus 92 mtVa~NIAFGl~~~ 105 (345)
T COG1118 92 MTVADNIAFGLKVR 105 (345)
T ss_pred chHHhhhhhccccc
Confidence 99999999998877
No 427
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=2.8e-15 Score=153.37 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=83.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC-
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK- 934 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~- 934 (991)
+.++||+.++ +.+++|+|||..+++|+.++|+||||+||||||.+|.+-.+ +.+|+|.|+|...
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 4567777555 25788999999999999999999999999999999999887 5689999999654
Q ss_pred ---CcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 ---KQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ---~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
+....+|.+|+|.|+-.++|++||-|+++.+=
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 23468999999999999999999999999863
No 428
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=2.8e-14 Score=178.10 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=87.2
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||... .| +.+.+|||||+|||.||++|+.+| ++++|||||+|||+.....+++.|+++.+ .|.|+|
T Consensus 470 ~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 3677888653 34 455789999999999999999986 89999999999999999999999999865 466666
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++.| ....+ ..||+|++| ++|+|++.|+++++.
T Consensus 544 vVeH-d~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 544 VVEH-DEETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEC-CHHHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6554 45455 589999999 899999999998874
No 429
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=5.7e-15 Score=156.50 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=83.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ++.+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4678887663 1357999999999999999999999999999999999854 468999999998653
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
..++.+|||+|+....+..||+|+|.+.+.++.
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 456789999999988899999999999876653
No 430
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.9e-15 Score=176.24 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=97.1
Q ss_pred CCccCC-CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeee
Q 001957 846 GMVLPF-EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 924 (991)
Q Consensus 846 ~~~lp~-~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~ 924 (991)
|...|. ....+.|+||+|.||++|+ ..+|+|+|+.++||+.||||||||.||||+.++|- .-+-+.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp~----------~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~--rfY~Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRPD----------VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL--RFYDPTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCCC----------chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH--HhcCCCC
Confidence 555563 4568999999999999874 46699999999999999999999999999999994 3345679
Q ss_pred EEEEEcCccCC---cccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHH
Q 001957 925 GNITISGYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 978 (991)
Q Consensus 925 G~I~inG~~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~ 978 (991)
|.|++||+|++ ....+|.+|+|.|+.+++ .=||+|++.|-.- ++++|+
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~-----~~t~e~ 573 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLD-----NATDEE 573 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCC-----CCCHHH
Confidence 99999999965 456899999999999999 6799999999533 666555
No 431
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6.7e-15 Score=167.83 Aligned_cols=100 Identities=28% Similarity=0.392 Sum_probs=85.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||+..++ . .+.+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+|+|++||.+..
T Consensus 4 l~i~~l~~~~~--~----------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD--G----------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC--C----------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67889887762 1 2357999999999999999999999999999999999876 46899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..-+|.+|||+|+..++|++||+|++.|..+.+
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 2 223588999999999999999999999986654
No 432
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.55 E-value=2.7e-15 Score=156.39 Aligned_cols=112 Identities=24% Similarity=0.273 Sum_probs=90.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.|+||+..|. .+.+++|||+.+.+|++++|+|||||||||+|.++-+-.. ..+|+|+|||.+..
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 46788875542 3578999999999999999999999999999999965444 56899999999965
Q ss_pred c---ccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHhccccc
Q 001957 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKVGTKS 985 (991)
Q Consensus 936 ~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~~~vee 985 (991)
. ...+|.+|||=|+-.++|++||.|++.+=-.|. ..++++..+-++|
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~E 116 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADE 116 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHH
Confidence 3 357999999999999999999999998765554 3455555555554
No 433
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=6.2e-15 Score=157.44 Aligned_cols=98 Identities=27% Similarity=0.295 Sum_probs=82.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 5678887763 1358999999999999999999999999999999999854 358999999987532
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+..+.|.+||+|++.|.+.++
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 234567899999998899999999999987665
No 434
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=1.1e-14 Score=166.97 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=86.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|++..+. ...+|+|||+.+++|++++|+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999997662 1357999999999999999999999999999999999986 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|..+.+
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 42 346789999999999999999999999976654
No 435
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=4.1e-15 Score=154.18 Aligned_cols=101 Identities=30% Similarity=0.381 Sum_probs=86.9
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+||+-.| .+.++|+|||+.+++|++++|+|+|||||||||+.|+|-.. ..+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 4567777444 24789999999999999999999999999999999999876 34899999999955
Q ss_pred ----cccccceeeEEeccCCCCCCCCHHHHHHhhhhccCC
Q 001957 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971 (991)
Q Consensus 936 ----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp 971 (991)
.+..++-++||||-.-.+|.+||+|+|...+..|-.
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~ 108 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD 108 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc
Confidence 245788899999999999999999999998776643
No 436
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.55 E-value=3.5e-14 Score=177.62 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=88.4
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|+.+||.+. .|. .+..|||||||||.||++|..+| ++++|||||+|||+..+..+++.|+++.+ .|.|+|
T Consensus 472 ~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999754 554 45689999999999999999987 99999999999999999999999999864 566666
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++ .|...++ ..+|+|++| .+|++++.|+++++.
T Consensus 546 vV-eH~~~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 546 VV-EHDEDTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EE-eCCHHHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 65 4555565 469999999 999999999998874
No 437
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.55 E-value=9.5e-15 Score=167.35 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=86.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.++++|+++.+. ...+|+|||+.+++|+++||+|+|||||||||++|||-.. ..+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998763 1357999999999999999999999999999999999876 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..-+|.+|||.|+..++|++||+|++.|..+.+
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 42 234688999999999999999999999986654
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.55 E-value=3.8e-15 Score=159.58 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=85.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
++.+|+++.|+ ++.+|+|||+.+++|++++|+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 3 L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchh
Confidence 67889999884 3578999999999999999999999999999999999665 46899999999854
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...++|.+||+||.-...+.+||+|...+.
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~G 100 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG 100 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhc
Confidence 456999999999999999999999999987
No 439
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.7e-15 Score=148.02 Aligned_cols=97 Identities=29% Similarity=0.416 Sum_probs=84.4
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+|+|||..+.+|++++++||||||||||||++||-.+ +..|.|.+||+++.-..-.| |.|-|+|.++|-+||.+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgaer--gvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER--GVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCccc--eeEeccCccchhhHHHH
Confidence 457999999999999999999999999999999999998 67999999999976433322 88999999999999999
Q ss_pred HHHhhhhccCCCCCCHHHHhcccc
Q 001957 961 SLLFSAWLRLSPEVDSETRKVGTK 984 (991)
Q Consensus 961 sL~fsA~LRlp~~v~~~~k~~~ve 984 (991)
+..|.-+||. +++++|..-+.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~ 114 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAH 114 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHH
Confidence 9999999984 56677765443
No 440
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=8.6e-14 Score=153.32 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=63.8
Q ss_pred ccCCCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 320 MIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
...-+|+||||++++|++|+ .+|++++|||||++||+.....+.+.|+++ . .+++++|| .+.+..
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~-~~~~~~ 253 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTD-LADFDA 253 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCC-chhccc
Confidence 34568999999999999875 799999999999999999999999999764 2 35555554 446667
Q ss_pred hc---CeEEEecCCeE
Q 001957 391 LF---DDIILLSDGQI 403 (991)
Q Consensus 391 lf---D~vilL~~G~i 403 (991)
++ ++++.|++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 76 68999999986
No 441
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.54 E-value=9.8e-15 Score=153.90 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=63.8
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~-L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.++++++| +..+.+++.+|++++|||||+|||+.....+... ++.+.+ .+.++|+++ |. .+..+.+|++..+..|
T Consensus 91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~t-H~-~~~~~~~~~~~~l~~~ 166 (202)
T cd03243 91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFAT-HF-HELADLPEQVPGVKNL 166 (202)
T ss_pred eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEC-Ch-HHHHHHhhcCCCeEEE
Confidence 45655554 6666777889999999999999999988877654 555443 456666654 44 4778899999999999
Q ss_pred eEEEecCHHH
Q 001957 402 QIVYQGPREL 411 (991)
Q Consensus 402 ~iv~~G~~~~ 411 (991)
++...+...+
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 9998886533
No 442
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.54 E-value=9.6e-15 Score=155.67 Aligned_cols=104 Identities=24% Similarity=0.331 Sum_probs=84.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. +.+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35778887763110 11468999999999999999999999999999999999864 46899999998854
Q ss_pred ccc-------ccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 QET-------FARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~~t-------f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .++.+|||+|+....+.+||+|+|.|.+.++.
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 211 34679999999988999999999999876653
No 443
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.54 E-value=1.1e-14 Score=154.10 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=82.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.+.||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5678887663 1357999999999999999999999999999999999865 468999999987542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+++.+|||+|++...|..||+|.|.+.+..+
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 245677999999988899999999999876544
No 444
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.54 E-value=7.8e-15 Score=164.11 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=86.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|++..+. .+.+|+|||+.+.||+++||+|||||||||||++|+|... ..+|+|.|+|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887763 2458999999999999999999999999999999999865 56899999998864
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ...++.+|||+|+....|.+||+|+|.|.+.++.
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 2 2356789999999999999999999999988764
No 445
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.54 E-value=9.4e-15 Score=155.97 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=84.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++- .++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|++..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 356788877631 11458999999999999999999999999999999999865 46899999999854
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ..+++.+|||+|+....+..||+|++.|.+..+.
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 2 3456789999999888889999999998776553
No 446
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.3e-14 Score=157.44 Aligned_cols=209 Identities=23% Similarity=0.232 Sum_probs=135.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
+.++.|-|+.|-.|+-.+|+||||-||||||+.|+.+- +|. -.+-||.|+- .-..-
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--------------------IDvLlCEQEv-vad~t 335 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--------------------IDVLLCEQEV-VADST 335 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--------------------CceEeeeeee-eecCc
Confidence 45889999999999999999999999999999999873 332 1233444432 12222
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChH-----HHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID-----VYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
|.-+++.-+-. .|..++.+..+...+-. .-+.... .+.+-.+.....++.....+|.-||.+.-..
T Consensus 336 ~Ai~tvl~aD~-----kRl~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ--- 406 (807)
T KOG0066|consen 336 SAIDTVLKADK-----KRLALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ--- 406 (807)
T ss_pred HHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh---
Confidence 33333332211 11222222111111100 0000011 1111112222334455667888999875432
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
++.....|||-|-||++||||...|.+|.|||||+.||......+-+.|+.+. +|.+| ++|+...+-..|.+||
T Consensus 407 -~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLI-VSHDQgFLD~VCtdII 480 (807)
T KOG0066|consen 407 -ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLI-VSHDQGFLDSVCTDII 480 (807)
T ss_pred -cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEE-EecccchHHHHHHHHh
Confidence 35566899999999999999999999999999999999999888888888752 35444 4577888999999999
Q ss_pred EecCCeEEE-ecCH
Q 001957 397 LLSDGQIVY-QGPR 409 (991)
Q Consensus 397 lL~~G~iv~-~G~~ 409 (991)
.|++-++.| .|..
T Consensus 481 HLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 481 HLDNQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhhhhcchH
Confidence 999877754 4543
No 447
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.54 E-value=1.1e-14 Score=166.04 Aligned_cols=100 Identities=25% Similarity=0.306 Sum_probs=85.3
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeee--EEEEEcCc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 932 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~--G~I~inG~ 932 (991)
.+.++||++.+. +..+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 477889998773 1357999999999999999999999999999999999865 345 99999998
Q ss_pred cCCc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+... ...+|.+|||.|+..++|++||+|+|.|....+
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 8542 234688999999999999999999999986654
No 448
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.54 E-value=1.3e-14 Score=164.50 Aligned_cols=100 Identities=26% Similarity=0.286 Sum_probs=87.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+..++ ++.+|+|||+.+.||+++||+|||||||||||++|+|... ..+|+|.|+|++.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 478999998763 2468999999999999999999999999999999999876 4589999999985
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....+.+||+|+|.|.+.++
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 42 245778999999999999999999999988765
No 449
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.54 E-value=8.4e-15 Score=156.52 Aligned_cols=99 Identities=30% Similarity=0.376 Sum_probs=82.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35678887652 1357999999999999999999999999999999999875 45899999998754
Q ss_pred cc---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. . .++.+||++|+...+|.+||+|++.|.+..+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR 103 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc
Confidence 21 1 2466999999998999999999999876654
No 450
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.53 E-value=1.3e-14 Score=165.39 Aligned_cols=98 Identities=26% Similarity=0.417 Sum_probs=84.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.+.+|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66788887762 1357999999999999999999999999999999999875 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
. ..-+|.+|||+|+..++|++||+|++.|...+
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV 101 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence 2 23457899999999999999999999998665
No 451
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.1e-14 Score=157.83 Aligned_cols=99 Identities=25% Similarity=0.284 Sum_probs=82.9
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
.++||++.++- ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.+||.+..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 46788877631 0357999999999999999999999999999999999865 45899999998753
Q ss_pred --cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 --QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 --~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+..+++.+|||+|...+.+..||+|++.|.+.++
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 103 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL 103 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence 2345678899999999999999999999876654
No 452
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.53 E-value=1.6e-14 Score=155.93 Aligned_cols=98 Identities=28% Similarity=0.320 Sum_probs=81.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4678887663 1357999999999999999999999999999999999864 458999999998643
Q ss_pred c---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. . .++.+|||+|+...+|.+||+|+|.|.+..+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~ 103 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR 103 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc
Confidence 1 2 2356899999999999999999999876554
No 453
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.8e-14 Score=153.93 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=83.2
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~~---------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGGG---------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCCC---------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-
Confidence 4678887763210 11468999999999999999999999999999999999865 35899999998864
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..++.+|||+|+..+.+..||+|++.|.+..+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 101 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ 101 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHc
Confidence 35678999999988889999999999876654
No 454
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.53 E-value=1.6e-14 Score=155.47 Aligned_cols=98 Identities=26% Similarity=0.284 Sum_probs=81.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++||++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5678887763 1357999999999999999999999999999999999865 458999999987532
Q ss_pred c---c-ccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. . .++.+|||+|+....|.+||+|++.+....+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc
Confidence 1 2 2356899999998999999999999875544
No 455
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.53 E-value=1.3e-14 Score=154.44 Aligned_cols=101 Identities=22% Similarity=0.313 Sum_probs=83.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++- +++.+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567899887731 12358999999999999999999999999999999999764 45899999998753
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+||++|+....+..||+|++.|.+..+
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 108 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII 108 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc
Confidence 2 125678999999988899999999999876654
No 456
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.53 E-value=1.7e-14 Score=161.67 Aligned_cols=100 Identities=28% Similarity=0.289 Sum_probs=84.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.+. ...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988763 1357999999999999999999999999999999999865 3589999999875
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....|.+||+|+|.+.+.++
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 32 235678999999988899999999999877654
No 457
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.52 E-value=2.1e-14 Score=162.60 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++.+. ....+|+|||+.+.||+++||+|+||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 2 I~~~~lsk~y~~~~---------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT---------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC---------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 57889998774221 12468999999999999999999999999999999999976 46899999999864
Q ss_pred cc------cccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..+|.+|||+|+..++|..||+|++.|...++
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~ 110 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 110 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc
Confidence 21 24678999999999999999999999976554
No 458
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.7e-14 Score=155.48 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=84.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++-. .+...+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|++..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4678888776311 011368999999999999999999999999999999999975 46899999999864
Q ss_pred cc------cccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. .+++.+|||+|+....|.+||+|++.|.+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 110 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA 110 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc
Confidence 21 23677899999999999999999999876555
No 459
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.52 E-value=2.3e-14 Score=152.14 Aligned_cols=98 Identities=27% Similarity=0.384 Sum_probs=81.7
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ .+.+|+|||+.++||++++|+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5778887763 1357999999999999999999999999999999999864 458999999988542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+....+..||+|++.+.+.++
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR 100 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc
Confidence 123467999999988889999999999876544
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.2e-14 Score=164.67 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=84.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.+++|+++||+|+|||||||||++|||-.. ..+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67889987763 1357999999999999999999999999999999999865 45899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 2 224577999999999999999999999987655
No 461
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.52 E-value=2.6e-14 Score=149.67 Aligned_cols=116 Identities=42% Similarity=0.699 Sum_probs=91.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++.... .....+|+|+|+.++||+++||+|+||||||||+++|||-.+.-..+|+|.++|.+.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence 4678999988753110 012458999999999999999999999999999999999862125689999999987
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHHHh
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~k~ 980 (991)
.....++.+|||+|+....+..||+|++.+.+.++ +.|.-+|+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---~LS~G~~q 118 (194)
T cd03213 76 DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---GLSGGERK 118 (194)
T ss_pred chHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---cCCHHHHH
Confidence 64456788999999988889999999999877653 45554443
No 462
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.1e-14 Score=156.63 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=85.4
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC---eeeEEEEEcC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G---~i~G~I~inG 931 (991)
.+.++||++.++- ..+|+|||+.++||+++||+|+||||||||+++|+|-.... ..+|+|+++|
T Consensus 4 ~l~~~~l~~~~~~-------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYGS-------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeCC-------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 3678999987731 34799999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+.. +..+++.+|||+|+....+..||+|++.+.+..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 113 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLN 113 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhc
Confidence 8753 2245678999999998899999999999876544
No 463
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=2.5e-14 Score=154.17 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=84.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++-.. ....+|+|||+.++||++++|+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11468999999999999999999999999999999999865 4689999999886
Q ss_pred Cccc------c-cceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~t------f-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.... + ++.+||++|+....|.+||+|+|.|.+.++
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 4211 2 257899999988888999999999976554
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.52 E-value=1.7e-14 Score=153.78 Aligned_cols=103 Identities=28% Similarity=0.334 Sum_probs=84.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++-.. +...+|+|+|+.+.||+.+||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 46788888764210 11258999999999999999999999999999999999864 45899999999864
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|+..+.+..||+|++.+...++
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 106 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY 106 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc
Confidence 2 245678999999998899999999999876654
No 465
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.52 E-value=1.2e-14 Score=162.65 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=77.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc--ccccceeeEEeccCCCCCCCCH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTI 958 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~--~tf~r~~GY~eQ~Dih~p~~TV 958 (991)
..+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|.+... ...++.+|||+|++.+.|.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 468999999999999999999999999999999999865 458999999988542 2356779999999999999999
Q ss_pred HHHHHhhhhccC
Q 001957 959 YESLLFSAWLRL 970 (991)
Q Consensus 959 rEsL~fsA~LRl 970 (991)
+|+|.|.+.++.
T Consensus 84 ~e~l~~~~~~~~ 95 (302)
T TIGR01188 84 RENLEMMGRLYG 95 (302)
T ss_pred HHHHHHHHHHcC
Confidence 999999888764
No 466
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=2.4e-14 Score=151.46 Aligned_cols=99 Identities=27% Similarity=0.356 Sum_probs=83.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|++..++ +..+|+|||+.++||+++||+|+||||||||+++|+|-.. ..+|+|+++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788887652 2357999999999999999999999999999999999865 45799999998753
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...+++.+|||+|++...+..||+|++.+.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 2236778999999998889999999999876554
No 467
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.52 E-value=1.3e-14 Score=155.70 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=81.0
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCcc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGYP 933 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~~ 933 (991)
.++||++.++ .+.+|+|||+.+.||+++||+|+|||||||||++|+|-... -..+|+|+++|.+
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 68 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD 68 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEE
Confidence 5678887652 13579999999999999999999999999999999998610 1468999999988
Q ss_pred CCc-----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 934 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 934 ~~~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... ..+++.+|||+|+.... ..||+|++.|.+.++
T Consensus 69 ~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~ 108 (227)
T cd03260 69 IYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLH 108 (227)
T ss_pred hhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhc
Confidence 532 24567899999998766 799999999877655
No 468
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.4e-14 Score=155.99 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=84.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGY 932 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~ 932 (991)
+.++||++.++ ...+|+|||+.++||+++||+|+||||||||+++|+|.... ...+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67889987763 13579999999999999999999999999999999998642 246899999998
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+.. ....++.+||++|+..+.+..||+|++.|....+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 753 2346678999999998899999999999875443
No 469
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=2.5e-14 Score=151.05 Aligned_cols=99 Identities=26% Similarity=0.368 Sum_probs=83.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+..+|+++.++ ...+|+|||+.++||+.+||+|+||||||||+++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45678887653 1357999999999999999999999999999999999865 45899999998853
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|.+...|..||+|++.+.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 102 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH 102 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc
Confidence 2 346778999999998899999999999987554
No 470
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2.5e-14 Score=162.72 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=86.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++... .++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 i~i~~l~~~y~~~~---------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGG---------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCC---------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56889998874211 13568999999999999999999999999999999999875 45899999999864
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|+...++..||+|++.|.+.++
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~ 110 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA 110 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc
Confidence 2 124678999999998999999999999987654
No 471
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.51 E-value=2.7e-14 Score=153.13 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=83.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. ....+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46788888763110 01258999999999999999999999999999999999864 46899999998864
Q ss_pred c------ccccceeeEEeccC--CCCCCCCHHHHHHhhhhccC
Q 001957 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~D--ih~p~~TVrEsL~fsA~LRl 970 (991)
. ..+++.+||++|+. ...+..||+|++.+.+.++.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~ 113 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG 113 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhcc
Confidence 2 34677899999997 35678999999998765543
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.51 E-value=1.7e-14 Score=153.38 Aligned_cols=100 Identities=31% Similarity=0.360 Sum_probs=83.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ . +..+|+|+|+.++||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~--~----------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP--G----------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC--C----------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46788887763 1 1357999999999999999999999999999999999864 45899999998854
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+||++|+....+..||+|++.+.+.++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR 107 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc
Confidence 2 135678999999988889999999999976654
No 473
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2.7e-14 Score=151.74 Aligned_cols=98 Identities=30% Similarity=0.382 Sum_probs=81.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..+
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4678887763 1357999999999999999999999999999999999865 468999999987542
Q ss_pred -ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 -~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+....+..||+|++.+.+..+
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR 100 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence 224567899999988889999999999875543
No 474
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.51 E-value=1.9e-14 Score=151.94 Aligned_cols=86 Identities=31% Similarity=0.367 Sum_probs=73.2
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC-CCCCCCHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTIY 959 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di-h~p~~TVr 959 (991)
+.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+......++.+|||+|+.. .....||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 357999999999999999999999999999999999865 468999999998654456778999999864 34567999
Q ss_pred HHHHhhhhc
Q 001957 960 ESLLFSAWL 968 (991)
Q Consensus 960 EsL~fsA~L 968 (991)
|+|.|.+..
T Consensus 91 e~l~~~~~~ 99 (205)
T cd03226 91 EELLLGLKE 99 (205)
T ss_pred HHHhhhhhh
Confidence 999986544
No 475
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.51 E-value=2.6e-14 Score=151.81 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=82.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++- ++.+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 46788877631 1357999999999999999999999999999999999854 458999999987532
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+++.+||++|+....+..||+|++.+.+..+
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~ 106 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT 106 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc
Confidence 135678999999998999999999999876554
No 476
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.51 E-value=2.8e-14 Score=152.44 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=83.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. ..+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEGK---------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCCC---------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 46788888764211 12468999999999999999999999999999999999865 46899999998853
Q ss_pred c---cc---cc-ceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q---ET---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~---~t---f~-r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .. ++ +.+||++|+....+..||+|++.+.+.++
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 2 11 23 57899999988888999999999977655
No 477
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.50 E-value=1.4e-12 Score=162.81 Aligned_cols=98 Identities=28% Similarity=0.425 Sum_probs=84.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.|+||+|.|+. .+.+|+|||..++||+.+||+|+||||||||+++|+|--. ..+|+|+|||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46899999999851 1246999999999999999999999999999999999865 568999999998
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+ .+..++.+|||+|++.+++ -||||+|.+..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~ 572 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGA 572 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccC
Confidence 54 4678899999999998875 49999999863
No 478
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=2.6e-14 Score=151.59 Aligned_cols=97 Identities=35% Similarity=0.483 Sum_probs=81.9
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++|| ++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5678887662 135799999999999 999999999999999999999865 468999999987542
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
...++.+|||+|+..+++.+||+|.+.|..+++
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence 235678999999998899999999999977665
No 479
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=2.8e-14 Score=154.60 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=83.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 1358999999999999999999999999999999999865 45899999998854
Q ss_pred c----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+++.+|||+|++...+..||+|++.+.+.++
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 106 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence 2 224577999999998888999999999876544
No 480
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=3.2e-14 Score=149.67 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=82.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. .+.+|+|||+.++||+.+||+|+||||||||+++|+|... ..+|+|+++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 46788887762 1358999999999999999999999999999999999975 46899999999854
Q ss_pred --cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 --QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 --~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....|..||+|.+.|.+
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI 99 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHH
Confidence 2457788999999877788999999999864
No 481
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.1e-14 Score=154.87 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=85.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCC---eeeEEEEEcC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G---~i~G~I~inG 931 (991)
.+.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|||..... ..+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367889998773 135799999999999999999999999999999999986421 2589999999
Q ss_pred ccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+.. ....++.+|||+|+....+..||+|++.+....+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 113 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN 113 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhc
Confidence 8753 1245678999999988899999999999876554
No 482
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.50 E-value=2e-14 Score=173.36 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=84.7
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..++|+||+|.|+.. ..+|+|+|+.++||+.+||+|+||||||||+++|+|--. ..+|+|++||.
T Consensus 332 ~~~I~~~~vsf~Y~~~------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~ 397 (529)
T TIGR02868 332 KPTLELRDLSFGYPGS------------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGV 397 (529)
T ss_pred CceEEEEEEEEecCCC------------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 3469999999998521 237999999999999999999999999999999998865 56899999998
Q ss_pred cCC--cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK--QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~--~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. .+.+++.+|||+|+..++ .-||||+|.|.
T Consensus 398 ~i~~~~~~lr~~i~~V~Q~~~lF-~~TI~eNI~~g 431 (529)
T TIGR02868 398 SVSSLQDELRRRISVFAQDAHLF-DTTVRDNLRLG 431 (529)
T ss_pred EhhhHHHHHHhheEEEccCcccc-cccHHHHHhcc
Confidence 854 467788999999999887 45999999985
No 483
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.50 E-value=3.1e-14 Score=151.16 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=81.0
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
.++|+++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4678887763 1357999999999999999999999999999999999865 45899999998753
Q ss_pred ----cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....+..||+|++.+.+
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 1346788999999988899999999999865
No 484
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=4.1e-14 Score=154.56 Aligned_cols=97 Identities=27% Similarity=0.399 Sum_probs=81.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 46788887662 1357999999999999999999999999999999999864 45899999998864
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ..+.+|||+|+....|..||+|++.+.+.++
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~ 98 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA 98 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc
Confidence 2 3345799999988889999999999876544
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=99.50 E-value=4.2e-14 Score=151.27 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.1
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ . ++.+|+|||+.++||+++||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~--~----------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL--G----------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec--C----------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46788887763 1 1357999999999999999999999999999999999865 45899999998753
Q ss_pred c------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+ ..+++.+|||+|+....+..||+|+|.+.++++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA 107 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc
Confidence 2 125678999999887788999999999977654
No 486
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.50 E-value=2.8e-14 Score=162.58 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=77.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccc----cceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF----ARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf----~r~~GY~eQ~Dih~ 953 (991)
+.+|+|||+.+++|++++|||+|||||||||++|+|-.. ..+|+|+|+|.+... ..+ +|.+|||+|+..++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 568999999999999999999999999999999999876 468999999998653 223 67899999999999
Q ss_pred CCCCHHHHHHhhhhcc
Q 001957 954 PFVTIYESLLFSAWLR 969 (991)
Q Consensus 954 p~~TVrEsL~fsA~LR 969 (991)
|++||+|++.|...++
T Consensus 84 ~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 84 PHMTILQNTSLGPELL 99 (363)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 9999999999987654
No 487
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=4.8e-14 Score=152.53 Aligned_cols=100 Identities=28% Similarity=0.401 Sum_probs=83.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++ ...+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367889988773 1357999999999999999999999999999999999865 4689999999885
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+|||+|+....+..||+|++.|.+..+
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 102 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK 102 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence 42 122467899999988889999999999876544
No 488
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=5.5e-14 Score=149.57 Aligned_cols=100 Identities=25% Similarity=0.279 Sum_probs=85.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++|+++.++ ++.+|+|||+.+.+|+.+||+|+||||||||+++|+|... ..+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899997753 1357999999999999999999999999999999999865 4579999999986
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.....++.+|||+|.+.+.+.+|++|++.+.+.++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 110 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH 110 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc
Confidence 54345667899999988899999999999876554
No 489
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.50 E-value=5.3e-14 Score=150.58 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=81.6
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776653 1357999999999999999999999999999999999865 468999999998653
Q ss_pred ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 937 ~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... +.+|||+|++...+..||+|++.+.+.++
T Consensus 67 ~~~-~~~~~~~q~~~~~~~~t~~~~~~~~~~~~ 98 (223)
T TIGR03740 67 KDL-HKIGSLIESPPLYENLTARENLKVHTTLL 98 (223)
T ss_pred ccc-ccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence 333 57899999998889999999999877654
No 490
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.2e-14 Score=156.73 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=84.6
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~in 930 (991)
..+.++||++.++ ...+|+|||+.++||+++||+|+|||||||||++|+|.... ...+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998773 13579999999999999999999999999999999998531 1368999999
Q ss_pred CccCC-----cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 931 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 931 G~~~~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
|.+.. ....++.+|||+|+..+.+. ||+|+|.|.+.++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~ 122 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING 122 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC
Confidence 98753 23456779999999887775 99999999876653
No 491
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.50 E-value=2.8e-14 Score=155.13 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=82.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC---CeeeEEEEEcCc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISGY 932 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~---G~i~G~I~inG~ 932 (991)
+.++||++.++ +..+|+|||+.++||+++||+|+|||||||||++|+|-... +..+|+|+++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 12479999999999999999999999999999999998642 123899999999
Q ss_pred cCCc-----ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 933 ~~~~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
+... ...++.+|||+|+....+ .||+|++.|.+.++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~ 109 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH 109 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc
Confidence 8642 245678999999988888 99999999977655
No 492
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=3.5e-14 Score=157.81 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=82.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-.. .....+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889998874211 011358999999999999999999999999999999999875 46899999999864
Q ss_pred c-----ccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 Q-----ETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~-----~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
. ..+++.+|||+|+. ......||+|.|.|....
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 3 24578899999985 344467999999987554
No 493
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.49 E-value=4.9e-14 Score=152.57 Aligned_cols=96 Identities=20% Similarity=0.369 Sum_probs=81.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ .+.+|+|||+.+.||+++||+|+||||||||+++|+|--. ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788887763 1357999999999999999999999999999999999854 46899999998854
Q ss_pred c-----ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ~-----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
. ...++.+|||+|+....|..||+|.+.|..
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 102 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP 102 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHH
Confidence 2 234677999999988889999999998864
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=3.5e-14 Score=153.65 Aligned_cols=96 Identities=26% Similarity=0.315 Sum_probs=80.3
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++||++.++- +..+|+|||+.+.||+++||+|+|||||||||++|+|-.. ..+|+|+++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 56788876631 1357999999999999999999999999999999999864 458999999987542
Q ss_pred ------ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 937 ------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...++.+||++|+...++..||+|+|.+..
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 235678999999998899999999998754
No 495
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=3.2e-14 Score=158.34 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=82.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++-... ....+|+|||+.++||+.+||+|+|||||||||++|+|-.. ..+|+|.++|++..
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP--------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc--------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999998842210 11358999999999999999999999999999999999875 45899999999863
Q ss_pred -------cccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 -------QETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 -------~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
...+++.+|||+|+. .+....||+|++.|....
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 124678899999984 334357999999987554
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.49 E-value=4.4e-14 Score=149.17 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=75.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC---c----ccccceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~---~----~tf~r~~GY~eQ~Dih~ 953 (991)
..+|+|||+.++||+.++|+|+|||||||||++|+|... ..+|+|.++|.+.. . ...+|.+|||+|+....
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 357999999999999999999999999999999999875 46899999999832 1 13567899999998888
Q ss_pred CCCCHHHHHHhhhhcc
Q 001957 954 PFVTIYESLLFSAWLR 969 (991)
Q Consensus 954 p~~TVrEsL~fsA~LR 969 (991)
+..||+|++.|.+..+
T Consensus 89 ~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 89 ENETVEENLDLGLKYK 104 (206)
T ss_pred cCCcHHHHHHHHHHhc
Confidence 9999999999976654
No 497
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=5.3e-14 Score=144.60 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=79.2
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++. ..+|+|+|+.+.||+++||+|+|||||||||++|+|... ..+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYGK-------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEECC-------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 56788876631 247999999999999999999999999999999999865 358999999987542
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
..+++.+|||+|+....+..||+|++.+|
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 24567899999998889999999998644
No 498
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.49 E-value=5e-14 Score=148.41 Aligned_cols=95 Identities=27% Similarity=0.388 Sum_probs=80.5
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK- 935 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~- 935 (991)
..+|+++.++ ...+|+|||+.++||+.+||+|+||||||||+++|+|-.. ..+|+|.++|.+..
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677776652 1357999999999999999999999999999999999876 45899999998853
Q ss_pred -cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 -QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 -~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
...+++.+||++|+....+..||+|++.+..
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence 2346788999999988889999999999864
No 499
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.49 E-value=5.8e-14 Score=147.50 Aligned_cols=99 Identities=24% Similarity=0.262 Sum_probs=82.1
Q ss_pred eecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc
Q 001957 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (991)
Q Consensus 857 ~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~ 936 (991)
.++|+++.++ ...+|+|||+.+.||+.+||+|+||||||||+++|+|... ..+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4677776652 2357999999999999999999999999999999999865 458999999987431
Q ss_pred --ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 937 --~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
..+++.+|||+|.+..++..||+|.+.+...++.
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 3466789999999888889999999998765543
No 500
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.48 E-value=6.1e-14 Score=151.45 Aligned_cols=99 Identities=25% Similarity=0.332 Sum_probs=82.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.++ ++.+|+|||+.++||+++||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46778887763 1357999999999999999999999999999999999865 35899999998753
Q ss_pred c--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ....+.+|||+|+....+..||+|++.+.+.++
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 2 123357899999988889999999999877655
Done!