Query 001957
Match_columns 991
No_of_seqs 664 out of 3672
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.2E-53 1.8E-57 550.7 43.7 257 79-414 380-641 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2.6E-48 9E-53 505.3 45.1 257 79-414 352-613 (1284)
3 3tui_C Methionine import ATP-b 100.0 3.4E-43 1.1E-47 396.1 28.7 207 164-413 40-252 (366)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 8.2E-43 2.8E-47 392.8 27.4 207 165-414 17-228 (359)
5 3rlf_A Maltose/maltodextrin im 100.0 1.1E-42 3.8E-47 394.2 28.5 207 165-414 16-223 (381)
6 3tif_A Uncharacterized ABC tra 100.0 4.2E-42 1.4E-46 368.5 26.2 207 165-412 18-232 (235)
7 2yyz_A Sugar ABC transporter, 100.0 9.1E-42 3.1E-46 385.5 28.6 207 165-414 16-223 (359)
8 3gfo_A Cobalt import ATP-bindi 100.0 6.7E-42 2.3E-46 374.4 26.6 206 166-414 22-233 (275)
9 4g1u_C Hemin import ATP-bindin 100.0 9.2E-42 3.1E-46 372.1 27.4 204 165-413 24-236 (266)
10 2pcj_A ABC transporter, lipopr 100.0 1.1E-41 3.7E-46 362.7 26.4 200 165-409 17-223 (224)
11 2it1_A 362AA long hypothetical 100.0 1.1E-41 3.8E-46 385.2 27.5 206 165-413 16-222 (362)
12 2olj_A Amino acid ABC transpor 100.0 2.7E-41 9.3E-46 367.4 28.8 205 165-413 37-247 (263)
13 1g29_1 MALK, maltose transport 100.0 2.3E-41 8E-46 384.6 28.4 206 165-413 16-228 (372)
14 1v43_A Sugar-binding transport 100.0 1.9E-41 6.4E-46 384.7 27.0 206 165-413 24-230 (372)
15 1b0u_A Histidine permease; ABC 100.0 2.1E-41 7E-46 368.9 26.2 205 165-413 19-241 (262)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-41 5.9E-46 383.4 25.3 204 167-413 20-229 (353)
17 1z47_A CYSA, putative ABC-tran 100.0 2.5E-41 8.5E-46 381.0 26.4 206 165-413 28-234 (355)
18 3d31_A Sulfate/molybdate ABC t 100.0 2.6E-41 8.9E-46 380.6 26.4 214 167-434 15-229 (348)
19 3nh6_A ATP-binding cassette SU 100.0 3.8E-42 1.3E-46 381.2 19.0 208 165-414 67-277 (306)
20 1g6h_A High-affinity branched- 100.0 3.5E-41 1.2E-45 366.2 25.6 214 165-411 20-239 (257)
21 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-41 2.3E-45 363.1 27.7 206 165-414 28-235 (256)
22 1ji0_A ABC transporter; ATP bi 100.0 1.1E-40 3.6E-45 358.8 26.2 204 165-413 19-227 (240)
23 2onk_A Molybdate/tungstate ABC 100.0 1.1E-40 3.6E-45 358.4 22.6 201 167-413 14-215 (240)
24 2yz2_A Putative ABC transporte 100.0 8.9E-40 3E-44 356.9 26.0 205 165-414 20-227 (266)
25 2ihy_A ABC transporter, ATP-bi 100.0 9.1E-40 3.1E-44 358.6 23.5 208 165-413 34-251 (279)
26 2ff7_A Alpha-hemolysin translo 100.0 3.3E-39 1.1E-43 348.5 25.0 200 165-413 22-231 (247)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 3.1E-39 1.1E-43 349.5 23.9 205 165-411 16-230 (250)
28 2ixe_A Antigen peptide transpo 100.0 1E-38 3.5E-43 349.2 24.5 209 165-414 32-245 (271)
29 2zu0_C Probable ATP-dependent 100.0 2.2E-38 7.5E-43 345.9 26.8 216 165-422 33-261 (267)
30 2nq2_C Hypothetical ABC transp 100.0 3.6E-38 1.2E-42 341.4 27.3 198 165-413 18-216 (253)
31 2pjz_A Hypothetical protein ST 100.0 5.6E-38 1.9E-42 341.4 25.6 194 165-413 18-214 (263)
32 4a82_A Cystic fibrosis transme 100.0 3.6E-38 1.2E-42 380.6 25.0 257 79-414 305-564 (578)
33 1mv5_A LMRA, multidrug resista 100.0 6.3E-39 2.2E-43 345.7 16.4 202 165-414 15-226 (243)
34 2ghi_A Transport protein; mult 100.0 5.8E-38 2E-42 341.3 24.1 200 165-414 33-242 (260)
35 2qi9_C Vitamin B12 import ATP- 100.0 3.7E-38 1.3E-42 340.2 21.2 198 166-413 14-221 (249)
36 3qf4_A ABC transporter, ATP-bi 100.0 4.6E-38 1.6E-42 379.9 23.1 208 165-414 356-566 (587)
37 3gd7_A Fusion complex of cysti 100.0 1.2E-38 4.1E-43 363.8 16.4 200 165-414 34-242 (390)
38 2yl4_A ATP-binding cassette SU 100.0 8.4E-38 2.9E-42 378.8 23.9 203 165-413 357-569 (595)
39 3b5x_A Lipid A export ATP-bind 100.0 1.8E-37 6E-42 375.0 25.8 249 79-414 309-567 (582)
40 3b60_A Lipid A export ATP-bind 100.0 1.4E-37 4.7E-42 376.0 24.8 202 165-414 356-567 (582)
41 1sgw_A Putative ABC transporte 100.0 8.6E-38 3E-42 329.7 19.3 188 166-403 23-210 (214)
42 2cbz_A Multidrug resistance-as 100.0 2.8E-37 9.6E-42 331.4 20.7 196 165-414 18-217 (237)
43 3qf4_B Uncharacterized ABC tra 100.0 2E-37 7E-42 375.2 21.6 255 79-414 321-578 (598)
44 2pze_A Cystic fibrosis transme 100.0 5.1E-37 1.8E-41 327.8 21.7 196 165-413 21-217 (229)
45 4f4c_A Multidrug resistance pr 100.0 1.4E-37 4.9E-42 405.5 17.8 260 79-414 1042-1304(1321)
46 2bbs_A Cystic fibrosis transme 100.0 9.8E-35 3.4E-39 320.0 18.1 194 166-413 52-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 2.4E-34 8.2E-39 374.4 22.0 210 165-414 1046-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2.3E-31 7.7E-36 320.8 19.5 191 167-414 371-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-31 7.7E-36 317.5 18.1 191 167-414 301-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-31 2.6E-35 312.2 18.7 192 167-413 283-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.5E-30 5.1E-35 313.0 19.1 193 165-414 360-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-29 5.8E-34 310.2 15.8 215 164-413 30-297 (670)
53 2iw3_A Elongation factor 3A; a 100.0 1.4E-28 4.8E-33 305.8 22.4 184 165-413 448-634 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-29 6.3E-34 301.0 10.9 182 166-401 36-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.9E-29 6.4E-34 304.1 10.9 182 166-401 106-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 8.8E-29 3E-33 307.6 15.6 221 165-408 686-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.9E-28 1.3E-32 298.1 18.4 106 300-413 524-639 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-27 3.9E-32 284.9 9.5 174 175-402 22-214 (538)
59 3j16_B RLI1P; ribosome recycli 99.9 4.3E-27 1.5E-31 283.0 10.0 185 166-402 92-298 (608)
60 3pih_A Uvrabc system protein A 99.9 2.1E-25 7.2E-30 277.4 23.6 108 299-413 785-901 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 1.1E-25 3.8E-30 277.6 17.4 106 300-413 826-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 99.9 1.7E-25 5.9E-30 276.0 17.0 108 298-413 709-826 (842)
63 2ygr_A Uvrabc system protein A 99.9 3.4E-25 1.2E-29 274.2 17.3 107 300-414 844-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 9E-28 3.1E-32 280.4 -6.3 185 169-413 129-337 (460)
65 4aby_A DNA repair protein RECN 99.9 1E-24 3.4E-29 252.8 17.1 236 165-407 48-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8E-22 2.7E-26 224.6 14.4 84 319-405 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 4.9E-24 1.7E-28 223.8 -5.6 152 160-387 8-160 (208)
68 1e69_A Chromosome segregation 99.8 3.4E-21 1.2E-25 215.9 12.2 88 320-411 216-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.8 1.2E-23 4.2E-28 241.5 -8.4 177 165-401 36-254 (413)
70 1ye8_A Protein THEP1, hypothet 99.8 5.2E-22 1.8E-26 203.4 2.9 149 180-405 2-159 (178)
71 2v9p_A Replication protein E1; 99.8 1.1E-23 3.6E-28 232.7 -11.5 157 165-418 113-270 (305)
72 4gp7_A Metallophosphoesterase; 99.8 2.9E-21 9.8E-26 196.5 4.0 65 323-389 83-163 (171)
73 3b9q_A Chloroplast SRP recepto 99.8 6.4E-21 2.2E-25 211.3 0.6 175 168-403 90-284 (302)
74 2o5v_A DNA replication and rep 99.8 4.7E-19 1.6E-23 200.4 14.8 86 318-412 259-354 (359)
75 3sop_A Neuronal-specific septi 99.8 8.1E-21 2.8E-25 207.3 -1.3 146 180-383 4-149 (270)
76 2dpy_A FLII, flagellum-specifi 99.8 1.5E-20 5E-25 218.4 -3.8 180 164-412 144-342 (438)
77 2og2_A Putative signal recogni 99.8 8.6E-20 2.9E-24 206.1 1.7 174 169-403 148-341 (359)
78 1znw_A Guanylate kinase, GMP k 99.8 8.1E-22 2.8E-26 206.7 -14.2 180 165-399 9-202 (207)
79 1z6g_A Guanylate kinase; struc 99.8 2.3E-22 7.7E-27 212.9 -19.0 171 165-400 10-193 (218)
80 2pt7_A CAG-ALFA; ATPase, prote 99.7 6.9E-19 2.4E-23 197.5 2.8 133 167-403 160-292 (330)
81 3qkt_A DNA double-strand break 99.7 4.1E-16 1.4E-20 175.9 23.6 78 319-399 244-327 (339)
82 1cr0_A DNA primase/helicase; R 99.7 1.4E-18 4.8E-23 192.1 3.3 187 164-403 21-237 (296)
83 3aez_A Pantothenate kinase; tr 99.7 1.7E-19 6E-24 200.7 -4.9 128 170-356 81-209 (312)
84 4ad8_A DNA repair protein RECN 99.7 2.9E-17 9.8E-22 195.7 13.7 78 320-401 393-473 (517)
85 2jeo_A Uridine-cytidine kinase 99.7 2.7E-18 9.4E-23 184.6 0.7 177 164-415 11-188 (245)
86 3tif_A Uncharacterized ABC tra 99.7 6.3E-17 2.1E-21 173.0 10.0 112 856-978 2-120 (235)
87 3pih_A Uvrabc system protein A 99.7 5.8E-17 2E-21 201.9 11.0 169 193-414 383-560 (916)
88 3thx_A DNA mismatch repair pro 99.7 1.4E-16 4.8E-21 199.3 11.0 89 322-412 720-811 (934)
89 3fvq_A Fe(3+) IONS import ATP- 99.6 1.6E-16 5.6E-21 178.9 9.9 101 855-970 4-109 (359)
90 3rlf_A Maltose/maltodextrin im 99.6 2.3E-16 7.7E-21 178.9 10.0 101 855-970 3-104 (381)
91 1tf7_A KAIC; homohexamer, hexa 99.6 2.2E-16 7.6E-21 188.3 10.3 156 172-402 275-444 (525)
92 3tui_C Methionine import ATP-b 99.6 2.9E-16 9.8E-21 177.0 10.3 105 855-970 24-134 (366)
93 1b0u_A Histidine permease; ABC 99.6 2.9E-16 9.9E-21 170.6 9.4 97 855-966 6-118 (262)
94 2obl_A ESCN; ATPase, hydrolase 99.6 3.6E-17 1.2E-21 184.5 2.4 181 164-412 58-253 (347)
95 2pcj_A ABC transporter, lipopr 99.6 3.7E-16 1.3E-20 165.9 9.8 99 856-969 5-110 (224)
96 1sgw_A Putative ABC transporte 99.6 3.7E-16 1.3E-20 164.4 9.5 97 855-969 10-106 (214)
97 2olj_A Amino acid ABC transpor 99.6 3.4E-16 1.1E-20 170.0 9.4 97 855-966 24-125 (263)
98 1vpl_A ABC transporter, ATP-bi 99.6 3.3E-16 1.1E-20 169.4 9.1 100 855-969 15-116 (256)
99 2yyz_A Sugar ABC transporter, 99.6 3.3E-16 1.1E-20 176.8 9.5 99 856-969 4-103 (359)
100 1g29_1 MALK, maltose transport 99.6 4.6E-16 1.6E-20 176.8 9.9 99 856-969 4-109 (372)
101 2it1_A 362AA long hypothetical 99.6 5.2E-16 1.8E-20 175.4 10.0 99 856-969 4-103 (362)
102 1oxx_K GLCV, glucose, ABC tran 99.6 3.2E-16 1.1E-20 177.0 8.2 99 856-969 4-110 (353)
103 1z47_A CYSA, putative ABC-tran 99.6 4.3E-16 1.5E-20 175.5 9.3 101 855-969 14-115 (355)
104 2r6f_A Excinuclease ABC subuni 99.6 7.7E-16 2.6E-20 190.4 11.7 104 302-413 487-599 (972)
105 1ji0_A ABC transporter; ATP bi 99.6 6.2E-16 2.1E-20 165.9 9.5 96 856-966 7-106 (240)
106 1v43_A Sugar-binding transport 99.6 5.6E-16 1.9E-20 175.8 9.6 99 856-969 12-111 (372)
107 4a74_A DNA repair and recombin 99.6 7.6E-17 2.6E-21 170.4 2.3 154 173-402 20-201 (231)
108 3gfo_A Cobalt import ATP-bindi 99.6 5.8E-16 2E-20 169.1 8.3 101 855-969 7-113 (275)
109 4g1u_C Hemin import ATP-bindin 99.6 9.8E-16 3.3E-20 166.7 8.5 100 855-969 11-113 (266)
110 2yz2_A Putative ABC transporte 99.6 1.4E-15 4.9E-20 165.5 9.8 103 856-968 3-106 (266)
111 1g6h_A High-affinity branched- 99.6 8.1E-16 2.8E-20 166.6 7.7 99 855-968 7-109 (257)
112 1tf7_A KAIC; homohexamer, hexa 99.6 7.4E-18 2.5E-22 201.1 -9.4 169 164-402 24-211 (525)
113 3nh6_A ATP-binding cassette SU 99.6 4.4E-16 1.5E-20 172.3 4.9 100 852-966 50-152 (306)
114 2vf7_A UVRA2, excinuclease ABC 99.6 2E-15 6.7E-20 186.7 11.1 187 186-413 270-474 (842)
115 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 3.7E-15 1.3E-19 147.6 10.8 83 318-403 52-142 (148)
116 3d31_A Sulfate/molybdate ABC t 99.6 8.1E-16 2.8E-20 173.1 6.6 98 856-969 2-100 (348)
117 2i3b_A HCR-ntpase, human cance 99.6 1.8E-17 6.3E-22 171.1 -7.0 158 178-407 1-169 (189)
118 2eyu_A Twitching motility prot 99.6 6.1E-16 2.1E-20 167.9 3.8 133 166-400 15-147 (261)
119 3thx_B DNA mismatch repair pro 99.6 3.4E-15 1.2E-19 186.3 10.5 155 165-405 660-816 (918)
120 2qnr_A Septin-2, protein NEDD5 99.6 1.1E-16 3.9E-21 177.4 -2.7 156 164-385 10-167 (301)
121 1w1w_A Structural maintenance 99.6 9.2E-15 3.1E-19 170.1 13.1 76 321-399 331-410 (430)
122 2ehv_A Hypothetical protein PH 99.6 2.9E-16 9.8E-21 168.1 0.3 168 168-399 19-206 (251)
123 2ihy_A ABC transporter, ATP-bi 99.6 3E-15 1E-19 164.0 7.8 100 852-966 18-124 (279)
124 2o8b_B DNA mismatch repair pro 99.6 3.7E-16 1.3E-20 197.8 0.5 161 165-411 769-939 (1022)
125 2d2e_A SUFC protein; ABC-ATPas 99.6 4.4E-15 1.5E-19 160.2 8.7 99 856-967 4-106 (250)
126 3asz_A Uridine kinase; cytidin 99.6 3.5E-17 1.2E-21 171.4 -7.7 145 175-383 3-160 (211)
127 2ixe_A Antigen peptide transpo 99.5 2.6E-15 8.8E-20 163.9 6.8 99 855-966 16-117 (271)
128 2ff7_A Alpha-hemolysin translo 99.5 3.5E-15 1.2E-19 160.6 7.7 98 854-965 6-106 (247)
129 3szr_A Interferon-induced GTP- 99.5 1.9E-16 6.4E-21 191.7 -3.1 166 181-415 48-238 (608)
130 2ygr_A Uvrabc system protein A 99.5 1.3E-14 4.5E-19 180.1 13.3 105 302-414 504-617 (993)
131 1pzn_A RAD51, DNA repair and r 99.5 2.7E-16 9.1E-21 177.9 -1.8 168 167-409 119-310 (349)
132 1rj9_A FTSY, signal recognitio 99.5 5.3E-16 1.8E-20 171.9 0.3 148 177-383 101-257 (304)
133 1mv5_A LMRA, multidrug resista 99.5 2.6E-15 8.9E-20 161.3 5.3 95 856-965 2-99 (243)
134 2zu0_C Probable ATP-dependent 99.5 1.1E-14 3.9E-19 158.4 9.6 99 855-966 20-122 (267)
135 2onk_A Molybdate/tungstate ABC 99.5 9.4E-15 3.2E-19 156.5 8.3 96 856-969 2-98 (240)
136 1ewq_A DNA mismatch repair pro 99.5 2.7E-15 9.2E-20 184.6 4.2 132 165-392 566-704 (765)
137 2w0m_A SSO2452; RECA, SSPF, un 99.5 5.1E-16 1.7E-20 164.0 -2.5 78 323-401 103-192 (235)
138 2ghi_A Transport protein; mult 99.5 8.4E-15 2.9E-19 158.9 7.0 97 855-965 17-116 (260)
139 1wb9_A DNA mismatch repair pro 99.5 5.1E-15 1.7E-19 183.2 4.2 157 165-408 595-752 (800)
140 2qi9_C Vitamin B12 import ATP- 99.5 1.8E-14 6E-19 155.2 7.5 90 856-965 5-97 (249)
141 2pze_A Cystic fibrosis transme 99.5 2.9E-14 1E-18 151.7 8.3 88 855-966 6-93 (229)
142 2nq2_C Hypothetical ABC transp 99.5 3E-14 1E-18 153.9 8.1 88 856-967 5-92 (253)
143 2pjz_A Hypothetical protein ST 99.5 4.5E-14 1.5E-18 153.2 8.4 98 856-969 2-101 (263)
144 2cbz_A Multidrug resistance-as 99.5 4.7E-14 1.6E-18 150.9 8.4 88 856-967 4-91 (237)
145 4a82_A Cystic fibrosis transme 99.5 4.9E-14 1.7E-18 169.9 9.3 99 853-965 337-438 (578)
146 3qf4_B Uncharacterized ABC tra 99.5 4.1E-14 1.4E-18 171.2 8.6 98 853-965 352-452 (598)
147 3gd7_A Fusion complex of cysti 99.5 4.2E-14 1.4E-18 161.4 7.8 97 854-965 18-117 (390)
148 3qf4_A ABC transporter, ATP-bi 99.5 2.7E-14 9.4E-19 172.3 5.9 100 852-965 338-440 (587)
149 1nlf_A Regulatory protein REPA 99.5 6.1E-14 2.1E-18 153.5 8.0 152 174-386 26-182 (279)
150 2yl4_A ATP-binding cassette SU 99.4 7.4E-14 2.5E-18 169.0 9.2 100 854-966 339-442 (595)
151 3b60_A Lipid A export ATP-bind 99.4 7E-14 2.4E-18 168.8 8.9 99 854-966 340-441 (582)
152 3b5x_A Lipid A export ATP-bind 99.4 8.1E-14 2.8E-18 168.2 8.4 99 854-966 340-441 (582)
153 2bdt_A BH3686; alpha-beta prot 99.4 6.1E-16 2.1E-20 159.1 -13.6 170 178-412 2-182 (189)
154 1lw7_A Transcriptional regulat 99.4 3.6E-16 1.2E-20 178.1 -17.2 166 167-399 157-342 (365)
155 1zp6_A Hypothetical protein AT 99.4 6.6E-14 2.3E-18 143.8 0.7 142 174-369 5-147 (191)
156 1s96_A Guanylate kinase, GMP k 99.4 3.7E-14 1.3E-18 149.8 -1.2 150 172-417 10-163 (219)
157 3kta_B Chromosome segregation 99.4 1.4E-12 4.7E-17 132.5 10.1 89 320-412 61-156 (173)
158 2bbs_A Cystic fibrosis transme 99.4 5.6E-13 1.9E-17 146.6 7.5 81 855-963 40-120 (290)
159 2qag_C Septin-7; cell cycle, c 99.4 1.1E-13 3.8E-18 159.3 1.9 150 164-383 23-176 (418)
160 2cvh_A DNA repair and recombin 99.3 8.5E-13 2.9E-17 138.2 8.0 79 323-401 84-185 (220)
161 3jvv_A Twitching mobility prot 99.3 1.6E-13 5.5E-18 155.1 2.2 133 167-401 114-246 (356)
162 2gza_A Type IV secretion syste 99.3 4.1E-13 1.4E-17 152.5 4.9 136 167-402 164-303 (361)
163 1pui_A ENGB, probable GTP-bind 99.3 3.6E-14 1.2E-18 147.6 -5.0 67 301-371 131-198 (210)
164 1htw_A HI0065; nucleotide-bind 99.3 5.3E-14 1.8E-18 140.9 -3.6 78 165-249 20-97 (158)
165 2bbw_A Adenylate kinase 4, AK4 99.3 6.7E-14 2.3E-18 150.3 -6.9 148 177-371 26-198 (246)
166 2qag_B Septin-6, protein NEDD5 99.2 1.2E-12 4E-17 150.3 1.6 168 168-378 30-213 (427)
167 1n0w_A DNA repair protein RAD5 99.2 4.5E-12 1.5E-16 134.8 5.5 61 340-401 118-209 (243)
168 2f1r_A Molybdopterin-guanine d 99.2 7.3E-14 2.5E-18 141.8 -8.1 111 179-344 3-124 (171)
169 2ewv_A Twitching motility prot 99.2 3.3E-12 1.1E-16 145.6 3.8 131 167-399 127-257 (372)
170 1nij_A Hypothetical protein YJ 99.2 3.1E-14 1.1E-18 159.0 -13.2 163 179-393 5-197 (318)
171 2yhs_A FTSY, cell division pro 99.2 3.9E-12 1.3E-16 147.7 2.3 81 168-251 283-372 (503)
172 1htw_A HI0065; nucleotide-bind 99.2 2E-12 6.8E-17 129.5 -0.8 80 881-966 20-99 (158)
173 3e70_C DPA, signal recognition 99.2 7E-12 2.4E-16 140.2 3.0 74 175-251 126-208 (328)
174 2rcn_A Probable GTPase ENGC; Y 99.2 3.7E-12 1.3E-16 143.3 0.8 122 167-338 205-328 (358)
175 3ec2_A DNA replication protein 99.1 5.6E-12 1.9E-16 128.4 1.3 48 339-387 98-146 (180)
176 3auy_A DNA double-strand break 99.1 1.3E-10 4.3E-15 132.5 11.5 97 299-399 245-359 (371)
177 1odf_A YGR205W, hypothetical 3 99.1 4.7E-12 1.6E-16 139.3 -0.3 133 176-358 29-169 (290)
178 2qm8_A GTPase/ATPase; G protei 99.1 4.3E-13 1.5E-17 150.9 -9.7 181 165-370 42-259 (337)
179 1udx_A The GTP-binding protein 99.1 1.8E-11 6.3E-16 140.8 2.0 170 168-395 147-319 (416)
180 1p9r_A General secretion pathw 99.1 2.5E-12 8.5E-17 148.3 -7.0 137 165-346 156-314 (418)
181 2yv5_A YJEQ protein; hydrolase 99.0 4.1E-11 1.4E-15 132.7 2.5 124 176-336 163-300 (302)
182 2oap_1 GSPE-2, type II secreti 99.0 9E-13 3.1E-17 155.8 -12.1 84 166-252 248-331 (511)
183 3lda_A DNA repair protein RAD5 99.0 1.4E-10 4.9E-15 132.9 5.2 63 340-402 272-364 (400)
184 1lvg_A Guanylate kinase, GMP k 99.0 8.1E-14 2.8E-18 144.9 -21.9 57 334-400 116-173 (198)
185 1sxj_E Activator 1 40 kDa subu 99.0 6.7E-10 2.3E-14 125.1 8.0 135 181-385 39-175 (354)
186 2kjq_A DNAA-related protein; s 98.9 3.4E-10 1.2E-14 112.1 4.6 34 166-204 29-62 (149)
187 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3E-12 1E-16 146.1 -12.0 167 174-409 16-208 (392)
188 3c8u_A Fructokinase; YP_612366 98.9 1.3E-11 4.4E-16 129.0 -8.7 30 175-204 19-48 (208)
189 3sop_A Neuronal-specific septi 98.9 1.3E-10 4.5E-15 126.5 -1.3 72 896-969 4-75 (270)
190 2x8a_A Nuclear valosin-contain 98.9 3.1E-12 1E-16 139.8 -14.4 142 165-366 33-190 (274)
191 1u0l_A Probable GTPase ENGC; p 98.9 2.2E-10 7.6E-15 126.8 0.2 73 174-250 165-259 (301)
192 1sq5_A Pantothenate kinase; P- 98.9 5.4E-11 1.8E-15 132.2 -5.5 73 176-253 78-155 (308)
193 2dpy_A FLII, flagellum-specifi 98.8 3.9E-10 1.3E-14 130.9 0.2 100 854-968 130-241 (438)
194 2jeo_A Uridine-cytidine kinase 98.8 1E-09 3.4E-14 117.6 2.3 74 880-967 11-84 (245)
195 1z6g_A Guanylate kinase; struc 98.8 9.1E-10 3.1E-14 116.0 1.8 68 883-956 12-83 (218)
196 1in4_A RUVB, holliday junction 98.8 1.9E-11 6.6E-16 137.3 -11.9 154 166-373 32-196 (334)
197 2gza_A Type IV secretion syste 98.8 1.3E-09 4.5E-14 123.6 3.1 83 883-967 164-250 (361)
198 3b9q_A Chloroplast SRP recepto 98.8 9.1E-10 3.1E-14 121.8 1.1 81 884-966 90-180 (302)
199 1znw_A Guanylate kinase, GMP k 98.8 3.2E-10 1.1E-14 118.3 -3.3 79 881-964 9-87 (207)
200 1t9h_A YLOQ, probable GTPase E 98.7 1.3E-09 4.4E-14 120.4 0.9 71 174-248 169-248 (307)
201 3aez_A Pantothenate kinase; tr 98.7 7.4E-10 2.5E-14 123.1 -2.0 69 891-976 87-155 (312)
202 1s96_A Guanylate kinase, GMP k 98.7 3.9E-10 1.3E-14 118.9 -4.7 79 889-968 11-93 (219)
203 3euj_A Chromosome partition pr 98.7 2.7E-09 9.3E-14 124.4 1.7 54 165-222 17-70 (483)
204 2eyu_A Twitching motility prot 98.7 3.6E-09 1.2E-13 114.5 1.8 94 883-983 16-117 (261)
205 2v9p_A Replication protein E1; 98.7 4.2E-10 1.4E-14 124.2 -5.8 55 855-928 101-155 (305)
206 1vma_A Cell division protein F 98.7 9.4E-09 3.2E-13 113.7 5.0 113 171-370 97-212 (306)
207 2og2_A Putative signal recogni 98.7 3.5E-09 1.2E-13 119.4 1.4 80 885-966 148-237 (359)
208 3b85_A Phosphate starvation-in 98.7 6.2E-10 2.1E-14 116.4 -4.5 63 880-950 12-75 (208)
209 2npi_A Protein CLP1; CLP1-PCF1 98.6 1.7E-09 5.9E-14 126.2 -2.2 75 885-968 129-208 (460)
210 2dr3_A UPF0273 protein PH0284; 98.6 6.4E-08 2.2E-12 102.7 10.1 60 340-400 127-196 (247)
211 2yhs_A FTSY, cell division pro 98.6 4.4E-09 1.5E-13 122.3 1.1 80 884-965 283-371 (503)
212 2px0_A Flagellar biosynthesis 98.6 4.7E-08 1.6E-12 107.8 8.5 142 176-406 103-247 (296)
213 1tq4_A IIGP1, interferon-induc 98.6 9.7E-10 3.3E-14 126.2 -5.5 76 881-965 36-131 (413)
214 2qag_B Septin-6, protein NEDD5 98.6 1.7E-09 5.7E-14 124.2 -3.9 76 884-966 30-107 (427)
215 1sq5_A Pantothenate kinase; P- 98.6 5.6E-09 1.9E-13 115.8 0.1 101 855-972 37-159 (308)
216 3k1j_A LON protease, ATP-depen 98.6 3.5E-09 1.2E-13 128.3 -1.8 159 165-368 47-227 (604)
217 2r6a_A DNAB helicase, replicat 98.6 1.8E-08 6.2E-13 117.8 4.2 184 164-403 189-401 (454)
218 2pt7_A CAG-ALFA; ATPase, prote 98.6 1.7E-08 5.8E-13 113.0 3.2 75 883-964 160-235 (330)
219 2rcn_A Probable GTPase ENGC; Y 98.6 1.4E-08 4.9E-13 114.2 2.4 74 884-960 206-280 (358)
220 1zp6_A Hypothetical protein AT 98.6 7.7E-09 2.6E-13 105.7 -0.0 72 891-968 6-78 (191)
221 3tr0_A Guanylate kinase, GMP k 98.5 4.1E-09 1.4E-13 109.0 -2.6 71 172-249 1-74 (205)
222 1ls1_A Signal recognition part 98.5 1.9E-07 6.6E-12 102.8 10.3 118 169-369 91-209 (295)
223 1rj9_A FTSY, signal recognitio 98.5 2.1E-08 7.2E-13 110.9 1.4 72 892-965 100-180 (304)
224 1oix_A RAS-related protein RAB 98.5 2E-08 6.7E-13 103.0 1.1 38 329-368 151-188 (191)
225 2ius_A DNA translocase FTSK; n 98.5 1.2E-08 4.1E-13 119.8 -0.6 167 170-385 159-343 (512)
226 1u0l_A Probable GTPase ENGC; p 98.4 3.2E-08 1.1E-12 109.4 1.4 73 891-966 166-260 (301)
227 2zr9_A Protein RECA, recombina 98.4 1.8E-07 6.1E-12 105.5 7.0 30 173-202 56-85 (349)
228 4aby_A DNA repair protein RECN 98.4 5.5E-08 1.9E-12 112.1 2.7 81 882-964 49-169 (415)
229 2ewv_A Twitching motility prot 98.4 5.4E-08 1.8E-12 110.7 2.3 85 883-974 127-212 (372)
230 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-08 4.4E-13 105.2 -3.0 73 888-966 1-76 (205)
231 1iy2_A ATP-dependent metallopr 98.4 4.5E-10 1.5E-14 122.6 -15.3 77 166-249 63-143 (278)
232 3e70_C DPA, signal recognition 98.4 4.5E-08 1.5E-12 109.3 0.4 72 892-965 127-207 (328)
233 1ixz_A ATP-dependent metallopr 98.3 7.3E-10 2.5E-14 119.1 -14.8 76 166-248 39-118 (254)
234 2yv5_A YJEQ protein; hydrolase 98.3 1.1E-07 3.9E-12 105.0 2.4 70 892-965 163-245 (302)
235 3lnc_A Guanylate kinase, GMP k 98.3 8.4E-08 2.9E-12 101.5 1.2 40 165-204 14-54 (231)
236 1t9h_A YLOQ, probable GTPase E 98.3 1.6E-07 5.4E-12 103.7 2.7 70 890-962 169-247 (307)
237 3hr8_A Protein RECA; alpha and 98.3 2.6E-07 9E-12 104.0 4.3 41 173-216 56-97 (356)
238 2obl_A ESCN; ATPase, hydrolase 98.3 2.5E-07 8.6E-12 104.1 4.0 94 855-963 45-149 (347)
239 3szr_A Interferon-induced GTP- 98.3 1.1E-07 3.7E-12 115.1 0.7 71 897-968 48-124 (608)
240 1qhl_A Protein (cell division 98.3 2.2E-08 7.6E-13 105.9 -4.7 59 172-234 22-91 (227)
241 2bdt_A BH3686; alpha-beta prot 98.3 5.7E-08 1.9E-12 99.3 -1.7 68 894-969 2-69 (189)
242 2oap_1 GSPE-2, type II secreti 98.3 3.1E-07 1.1E-11 108.5 4.1 87 882-972 248-334 (511)
243 4a74_A DNA repair and recombin 98.3 4E-08 1.4E-12 103.1 -3.3 78 884-965 14-97 (231)
244 3asz_A Uridine kinase; cytidin 98.3 4.8E-07 1.6E-11 94.0 4.6 54 891-965 3-58 (211)
245 2qnr_A Septin-2, protein NEDD5 98.2 1.1E-07 3.6E-12 105.2 -0.9 80 880-967 10-89 (301)
246 2qm8_A GTPase/ATPase; G protei 98.2 7.8E-08 2.7E-12 108.0 -2.4 72 881-954 42-120 (337)
247 3euj_A Chromosome partition pr 98.2 2E-07 7E-12 108.7 0.0 51 882-935 18-68 (483)
248 4eun_A Thermoresistant glucoki 98.2 7.9E-08 2.7E-12 99.4 -3.6 72 172-250 23-96 (200)
249 3lnc_A Guanylate kinase, GMP k 98.2 6.9E-08 2.4E-12 102.2 -4.2 37 882-918 15-52 (231)
250 2ehv_A Hypothetical protein PH 98.2 1.1E-07 3.6E-12 101.2 -2.8 78 884-964 19-102 (251)
251 2f9l_A RAB11B, member RAS onco 98.1 1.2E-06 4.2E-11 89.9 4.7 37 332-370 130-166 (199)
252 2i3b_A HCR-ntpase, human cance 98.1 3.4E-07 1.2E-11 94.1 0.1 52 894-949 1-53 (189)
253 4eun_A Thermoresistant glucoki 98.1 1.9E-07 6.5E-12 96.5 -1.9 70 891-966 26-97 (200)
254 3jvv_A Twitching mobility prot 98.1 1E-06 3.4E-11 99.5 3.6 81 890-974 119-199 (356)
255 2qtf_A Protein HFLX, GTP-bindi 98.1 2.3E-06 8E-11 96.9 6.4 157 180-371 181-353 (364)
256 2qag_C Septin-7; cell cycle, c 98.1 1.8E-07 6.1E-12 107.7 -3.0 89 855-967 11-101 (418)
257 4gp7_A Metallophosphoesterase; 98.1 1.5E-06 5.1E-11 87.6 3.5 30 886-915 1-30 (171)
258 1p9r_A General secretion pathw 98.1 3.3E-07 1.1E-11 105.6 -1.6 82 881-966 156-259 (418)
259 2ce7_A Cell division protein F 98.0 7.1E-06 2.4E-10 95.9 8.8 34 167-202 40-73 (476)
260 3kta_A Chromosome segregation 98.0 2E-06 6.9E-11 87.0 3.5 36 169-205 18-53 (182)
261 1qhl_A Protein (cell division 98.0 2.1E-07 7.1E-12 98.4 -4.6 59 889-950 23-92 (227)
262 1zu4_A FTSY; GTPase, signal re 98.0 1E-06 3.6E-11 98.0 0.2 81 167-250 94-187 (320)
263 2j41_A Guanylate kinase; GMP, 98.0 2.5E-06 8.6E-11 87.9 2.7 33 173-205 1-33 (207)
264 1pzn_A RAD51, DNA repair and r 98.0 4.4E-07 1.5E-11 102.3 -3.3 77 884-965 120-203 (349)
265 2bbw_A Adenylate kinase 4, AK4 97.9 4.1E-07 1.4E-11 97.2 -3.7 69 893-964 26-97 (246)
266 4a1f_A DNAB helicase, replicat 97.9 7.2E-06 2.5E-10 91.6 6.1 39 164-202 32-70 (338)
267 3c8u_A Fructokinase; YP_612366 97.9 3E-06 1E-10 88.0 2.3 45 891-935 19-64 (208)
268 1ye8_A Protein THEP1, hypothet 97.9 1.8E-06 6.2E-11 87.8 0.4 48 896-950 2-52 (178)
269 3a00_A Guanylate kinase, GMP k 97.9 2.1E-06 7.3E-11 87.5 0.8 28 178-205 1-28 (186)
270 2f1r_A Molybdopterin-guanine d 97.9 1.4E-06 4.9E-11 88.0 -0.7 59 895-953 3-73 (171)
271 1cr0_A DNA primase/helicase; R 97.9 7.7E-07 2.6E-11 97.7 -3.0 38 882-919 23-60 (296)
272 2xau_A PRE-mRNA-splicing facto 97.9 1E-05 3.5E-10 100.4 6.6 75 321-396 188-263 (773)
273 4e22_A Cytidylate kinase; P-lo 97.8 1.5E-06 5E-11 93.4 -1.9 62 167-234 19-95 (252)
274 1e69_A Chromosome segregation 97.8 3.4E-06 1.2E-10 94.0 0.9 30 885-915 16-45 (322)
275 3vaa_A Shikimate kinase, SK; s 97.8 5.5E-06 1.9E-10 85.4 2.4 38 165-202 12-49 (199)
276 3uie_A Adenylyl-sulfate kinase 97.8 8.3E-07 2.8E-11 91.7 -4.3 52 165-220 12-65 (200)
277 1nij_A Hypothetical protein YJ 97.7 1.2E-06 4E-11 97.5 -4.6 71 895-965 5-102 (318)
278 1pui_A ENGB, probable GTP-bind 97.7 7.3E-06 2.5E-10 84.4 1.4 47 856-918 4-50 (210)
279 2x8a_A Nuclear valosin-contain 97.7 9.2E-07 3.1E-11 96.3 -5.7 81 881-967 33-117 (274)
280 1kgd_A CASK, peripheral plasma 97.7 1E-05 3.6E-10 82.0 2.5 38 176-215 3-40 (180)
281 1lvg_A Guanylate kinase, GMP k 97.7 9.4E-06 3.2E-10 83.8 1.7 27 892-918 2-28 (198)
282 2vp4_A Deoxynucleoside kinase; 97.7 9.3E-06 3.2E-10 85.8 1.7 63 886-954 12-87 (230)
283 1udx_A The GTP-binding protein 97.7 2.3E-05 7.8E-10 90.1 4.7 57 884-950 147-203 (416)
284 3nwj_A ATSK2; P loop, shikimat 97.7 4.2E-06 1.4E-10 89.8 -1.4 52 855-918 17-72 (250)
285 1lw7_A Transcriptional regulat 97.7 2E-06 6.9E-11 97.5 -4.1 76 884-963 158-245 (365)
286 2dhr_A FTSH; AAA+ protein, hex 97.7 4.8E-07 1.6E-11 106.4 -9.5 49 166-221 54-102 (499)
287 3uie_A Adenylyl-sulfate kinase 97.6 2E-06 6.8E-11 88.8 -4.0 61 884-948 15-77 (200)
288 2j41_A Guanylate kinase; GMP, 97.6 1.6E-05 5.5E-10 81.7 2.6 29 890-918 2-30 (207)
289 1in4_A RUVB, holliday junction 97.6 2.3E-06 7.8E-11 95.8 -4.7 81 882-964 32-124 (334)
290 3nwj_A ATSK2; P loop, shikimat 97.6 4.8E-06 1.6E-10 89.3 -2.1 39 165-203 32-73 (250)
291 4e22_A Cytidylate kinase; P-lo 97.6 6.6E-06 2.3E-10 88.3 -1.3 63 883-950 19-96 (252)
292 3bh0_A DNAB-like replicative h 97.6 0.00013 4.3E-09 81.0 8.6 38 164-201 54-91 (315)
293 1knq_A Gluconate kinase; ALFA/ 97.5 5.7E-06 1.9E-10 83.1 -2.2 67 892-964 6-74 (175)
294 2vp4_A Deoxynucleoside kinase; 97.5 2.1E-05 7.3E-10 83.0 1.8 39 174-219 16-54 (230)
295 2e87_A Hypothetical protein PH 97.5 0.00026 8.9E-09 79.8 10.6 57 322-381 230-287 (357)
296 3kta_A Chromosome segregation 97.5 3.8E-05 1.3E-09 77.5 3.3 31 885-916 18-48 (182)
297 1kgd_A CASK, peripheral plasma 97.5 3E-05 1E-09 78.6 2.4 39 892-931 3-41 (180)
298 2kjq_A DNAA-related protein; s 97.5 5.1E-05 1.7E-09 74.7 3.8 64 881-952 28-93 (149)
299 3tau_A Guanylate kinase, GMP k 97.5 4.6E-05 1.6E-09 79.1 3.7 29 176-204 6-34 (208)
300 3vaa_A Shikimate kinase, SK; s 97.5 2.8E-05 9.7E-10 80.0 1.6 37 882-918 13-49 (199)
301 3ney_A 55 kDa erythrocyte memb 97.5 3.3E-05 1.1E-09 79.7 2.0 28 176-203 17-44 (197)
302 3a00_A Guanylate kinase, GMP k 97.4 3.3E-05 1.1E-09 78.6 1.8 26 894-919 1-26 (186)
303 3t34_A Dynamin-related protein 97.4 0.00011 3.7E-09 83.0 6.2 43 165-213 24-68 (360)
304 1rz3_A Hypothetical protein rb 97.4 2.4E-05 8.1E-10 80.8 0.6 41 175-218 19-59 (201)
305 1knq_A Gluconate kinase; ALFA/ 97.4 3.6E-05 1.2E-09 77.2 1.8 37 176-219 6-42 (175)
306 1svm_A Large T antigen; AAA+ f 97.4 1.9E-05 6.4E-10 89.7 -0.4 44 165-214 156-199 (377)
307 1svm_A Large T antigen; AAA+ f 97.4 1.3E-05 4.5E-10 90.9 -1.7 64 881-951 156-219 (377)
308 3b9p_A CG5977-PA, isoform A; A 97.4 0.00062 2.1E-08 74.2 11.8 27 176-202 52-78 (297)
309 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 5.3E-05 1.8E-09 86.3 3.2 81 890-970 16-115 (392)
310 1v5w_A DMC1, meiotic recombina 97.4 0.001 3.4E-08 74.6 13.6 34 168-201 111-145 (343)
311 1ewq_A DNA mismatch repair pro 97.4 2E-05 6.7E-10 97.3 -0.5 69 881-964 566-634 (765)
312 1wb9_A DNA mismatch repair pro 97.4 2.5E-05 8.7E-10 96.8 0.2 71 881-964 595-665 (800)
313 1n0w_A DNA repair protein RAD5 97.4 4.9E-05 1.7E-09 80.1 2.2 65 884-948 13-87 (243)
314 2w0m_A SSO2452; RECA, SSPF, un 97.4 4.8E-05 1.7E-09 79.3 2.0 50 882-933 10-60 (235)
315 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.6E-09 76.0 4.5 30 174-203 17-46 (207)
316 2dy1_A Elongation factor G; tr 97.4 2.3E-05 7.8E-10 95.7 -0.8 48 172-221 3-50 (665)
317 1zu4_A FTSY; GTPase, signal re 97.3 4E-05 1.4E-09 85.2 1.0 80 884-965 95-187 (320)
318 3tau_A Guanylate kinase, GMP k 97.3 7.2E-05 2.5E-09 77.6 2.5 28 892-919 6-33 (208)
319 3cr8_A Sulfate adenylyltranfer 97.3 5.1E-05 1.7E-09 90.3 1.1 43 174-219 365-409 (552)
320 2z4s_A Chromosomal replication 97.2 0.00011 3.6E-09 85.5 3.3 95 340-437 193-295 (440)
321 3tqc_A Pantothenate kinase; bi 97.2 2.2E-05 7.5E-10 87.2 -2.5 25 180-204 94-118 (321)
322 2qt1_A Nicotinamide riboside k 97.2 0.00017 5.7E-09 74.4 4.3 29 890-918 17-45 (207)
323 2z43_A DNA repair and recombin 97.2 0.0015 5.1E-08 72.6 12.2 34 168-201 96-130 (324)
324 3ney_A 55 kDa erythrocyte memb 97.2 0.00011 3.7E-09 75.8 2.2 27 892-918 17-43 (197)
325 1fnn_A CDC6P, cell division co 97.2 0.0017 5.7E-08 73.1 12.1 29 177-205 41-71 (389)
326 2cvh_A DNA repair and recombin 97.2 8.8E-05 3E-09 76.8 1.3 47 883-933 8-55 (220)
327 1kag_A SKI, shikimate kinase I 97.2 0.00013 4.5E-09 72.7 2.4 27 177-203 3-29 (173)
328 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00025 8.4E-09 69.7 4.0 31 169-200 15-45 (149)
329 1lv7_A FTSH; alpha/beta domain 97.1 0.0016 5.4E-08 69.4 10.6 35 167-203 36-70 (257)
330 1odf_A YGR205W, hypothetical 3 97.1 0.00017 5.9E-09 78.9 2.8 58 892-965 29-86 (290)
331 2o5v_A DNA replication and rep 97.1 0.00013 4.5E-09 82.2 1.8 33 883-916 16-48 (359)
332 2gj8_A MNME, tRNA modification 97.1 0.00037 1.3E-08 69.6 5.0 42 892-933 2-53 (172)
333 1ega_A Protein (GTP-binding pr 97.1 0.00035 1.2E-08 76.9 5.0 52 890-951 5-56 (301)
334 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00017 5.8E-09 81.6 2.4 31 884-915 14-44 (365)
335 1oix_A RAS-related protein RAB 97.1 0.00032 1.1E-08 71.3 4.2 39 896-934 31-78 (191)
336 3cf0_A Transitional endoplasmi 97.0 0.0019 6.6E-08 70.8 10.5 29 175-203 46-74 (301)
337 3thx_B DNA mismatch repair pro 97.0 0.00013 4.5E-09 91.4 1.0 38 880-917 659-696 (918)
338 2f9l_A RAB11B, member RAS onco 97.0 0.00038 1.3E-08 71.1 4.3 39 896-934 7-54 (199)
339 2p67_A LAO/AO transport system 97.0 5.6E-05 1.9E-09 84.8 -2.1 51 165-218 43-93 (341)
340 3kl4_A SRP54, signal recogniti 97.0 0.0016 5.6E-08 74.9 9.6 37 177-216 96-132 (433)
341 1ixz_A ATP-dependent metallopr 97.0 0.00013 4.6E-09 77.7 0.5 77 882-964 39-119 (254)
342 2qby_A CDC6 homolog 1, cell di 97.0 0.00041 1.4E-08 77.9 4.3 29 176-204 43-71 (386)
343 1iy2_A ATP-dependent metallopr 97.0 0.00014 4.8E-09 78.8 0.5 77 882-964 63-143 (278)
344 2www_A Methylmalonic aciduria 96.9 0.00019 6.6E-09 80.7 1.2 42 176-220 72-113 (349)
345 1mky_A Probable GTP-binding pr 96.9 0.00086 2.9E-08 77.8 6.0 71 179-249 181-263 (439)
346 3llm_A ATP-dependent RNA helic 96.9 0.0001 3.4E-09 78.0 -1.8 66 326-394 163-229 (235)
347 4ad8_A DNA repair protein RECN 96.8 0.00033 1.1E-08 83.0 2.5 31 883-914 50-80 (517)
348 1nlf_A Regulatory protein REPA 96.8 0.00034 1.2E-08 75.9 2.3 37 884-920 20-56 (279)
349 1kag_A SKI, shikimate kinase I 96.8 0.00025 8.6E-09 70.6 1.2 27 893-919 3-29 (173)
350 2pez_A Bifunctional 3'-phospho 96.8 0.0002 6.8E-09 72.1 0.4 40 176-219 3-44 (179)
351 1u94_A RECA protein, recombina 96.8 0.0078 2.7E-07 67.7 13.4 29 174-202 59-87 (356)
352 4eaq_A DTMP kinase, thymidylat 96.8 0.00041 1.4E-08 73.2 2.6 38 167-204 12-52 (229)
353 2gj8_A MNME, tRNA modification 96.8 0.0013 4.5E-08 65.5 6.1 27 176-202 2-28 (172)
354 1f6b_A SAR1; gtpases, N-termin 96.8 0.00031 1.1E-08 71.9 1.5 51 882-933 14-70 (198)
355 1ypw_A Transitional endoplasmi 96.8 0.00079 2.7E-08 83.9 5.4 31 174-204 234-264 (806)
356 4fcw_A Chaperone protein CLPB; 96.8 0.0025 8.6E-08 69.6 8.9 29 177-205 46-74 (311)
357 3tqc_A Pantothenate kinase; bi 96.8 0.00018 6.1E-09 79.8 -0.5 55 881-935 73-136 (321)
358 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00053 1.8E-08 67.3 3.0 30 885-915 15-44 (149)
359 1cke_A CK, MSSA, protein (cyti 96.8 0.00011 3.6E-09 76.9 -2.4 54 178-234 5-73 (227)
360 3hr8_A Protein RECA; alpha and 96.8 0.00054 1.8E-08 77.0 3.3 78 884-964 49-130 (356)
361 3thx_A DNA mismatch repair pro 96.8 0.0004 1.4E-08 87.3 2.3 35 881-915 649-683 (934)
362 3m6a_A ATP-dependent protease 96.7 0.00022 7.4E-09 85.1 -0.2 47 167-217 98-144 (543)
363 1m2o_B GTP-binding protein SAR 96.7 0.00099 3.4E-08 67.5 4.7 50 166-216 12-66 (190)
364 2q6t_A DNAB replication FORK h 96.7 0.001 3.6E-08 77.1 5.4 38 165-202 187-224 (444)
365 1m2o_B GTP-binding protein SAR 96.7 0.001 3.4E-08 67.5 4.7 51 882-933 12-68 (190)
366 1rz3_A Hypothetical protein rb 96.7 0.00035 1.2E-08 72.0 1.1 40 891-932 19-58 (201)
367 3k1j_A LON protease, ATP-depen 96.7 0.0004 1.4E-08 83.9 1.8 67 881-950 47-113 (604)
368 1m7g_A Adenylylsulfate kinase; 96.7 0.00032 1.1E-08 72.7 0.4 42 175-219 22-65 (211)
369 3ec2_A DNA replication protein 96.6 0.00051 1.8E-08 69.1 1.8 30 889-918 33-62 (180)
370 3cr8_A Sulfate adenylyltranfer 96.6 0.00032 1.1E-08 83.5 0.2 42 890-933 365-408 (552)
371 3ice_A Transcription terminati 96.6 0.00056 1.9E-08 76.9 2.0 52 854-917 132-197 (422)
372 3lda_A DNA repair protein RAD5 96.6 0.00076 2.6E-08 77.1 2.8 65 884-948 167-241 (400)
373 3qks_A DNA double-strand break 96.6 0.0012 4.1E-08 68.3 4.0 30 170-200 16-45 (203)
374 1f6b_A SAR1; gtpases, N-termin 96.6 0.00051 1.7E-08 70.2 1.1 35 166-201 14-48 (198)
375 4eaq_A DTMP kinase, thymidylat 96.5 0.00074 2.5E-08 71.2 2.2 47 884-933 13-62 (229)
376 2qtf_A Protein HFLX, GTP-bindi 96.5 0.00094 3.2E-08 75.5 3.0 53 892-947 176-238 (364)
377 1mky_A Probable GTP-binding pr 96.5 0.0015 5.3E-08 75.6 4.6 38 896-933 182-229 (439)
378 2qag_A Septin-2, protein NEDD5 96.5 0.00032 1.1E-08 79.2 -1.2 76 165-249 30-105 (361)
379 1np6_A Molybdopterin-guanine d 96.5 0.0011 3.7E-08 66.9 2.8 40 179-218 7-46 (174)
380 2qor_A Guanylate kinase; phosp 96.5 0.00092 3.2E-08 68.8 2.3 29 175-203 9-37 (204)
381 2qor_A Guanylate kinase; phosp 96.4 0.0008 2.7E-08 69.3 1.7 28 891-918 9-36 (204)
382 2o8b_B DNA mismatch repair pro 96.4 0.00092 3.2E-08 85.0 2.5 37 881-918 769-812 (1022)
383 3bgw_A DNAB-like replicative h 96.4 0.013 4.5E-07 67.9 11.9 37 165-201 184-220 (444)
384 1y63_A LMAJ004144AAA protein; 96.4 0.0013 4.3E-08 66.6 2.9 32 170-201 2-33 (184)
385 1l8q_A Chromosomal replication 96.4 0.003 1E-07 69.8 5.9 47 340-387 97-144 (324)
386 3h4m_A Proteasome-activating n 96.4 0.0056 1.9E-07 66.0 7.9 28 176-203 49-76 (285)
387 2dr3_A UPF0273 protein PH0284; 96.3 0.001 3.4E-08 70.0 1.5 48 884-933 12-61 (247)
388 2yvu_A Probable adenylyl-sulfa 96.3 0.0011 3.8E-08 67.0 1.6 30 176-205 11-40 (186)
389 2wji_A Ferrous iron transport 96.3 0.0025 8.6E-08 62.8 4.1 38 896-933 5-51 (165)
390 2ffh_A Protein (FFH); SRP54, s 96.3 0.0011 3.6E-08 76.4 1.5 46 169-219 91-136 (425)
391 2wjg_A FEOB, ferrous iron tran 96.3 0.0026 8.9E-08 63.7 4.2 38 896-933 9-55 (188)
392 3qks_A DNA double-strand break 96.2 0.0017 6E-08 67.0 3.0 29 886-915 16-44 (203)
393 2wji_A Ferrous iron transport 96.2 0.0043 1.5E-07 61.0 5.7 23 180-202 5-27 (165)
394 2qag_A Septin-2, protein NEDD5 96.2 0.00046 1.6E-08 77.9 -1.9 32 881-918 30-61 (361)
395 1w1w_A Structural maintenance 96.2 0.0017 5.7E-08 75.1 2.7 27 890-916 22-48 (430)
396 3ice_A Transcription terminati 96.2 0.0013 4.3E-08 74.1 1.4 33 170-202 166-198 (422)
397 1jjv_A Dephospho-COA kinase; P 96.2 0.0023 7.8E-08 65.7 3.3 69 325-399 61-131 (206)
398 2pez_A Bifunctional 3'-phospho 96.2 0.0017 5.8E-08 65.1 2.3 27 892-918 3-29 (179)
399 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0022 7.5E-08 72.9 3.1 31 171-201 15-45 (396)
400 3lxx_A GTPase IMAP family memb 96.1 0.023 7.9E-07 59.6 10.8 25 180-204 31-55 (239)
401 3qkt_A DNA double-strand break 96.1 0.0019 6.5E-08 72.2 2.4 27 887-914 17-43 (339)
402 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0005 1.7E-08 76.8 -2.4 37 167-203 11-49 (359)
403 2wjg_A FEOB, ferrous iron tran 96.1 0.0034 1.2E-07 62.8 3.9 22 180-201 9-30 (188)
404 2p67_A LAO/AO transport system 96.1 0.0012 4E-08 74.0 0.5 37 881-917 43-79 (341)
405 1np6_A Molybdopterin-guanine d 96.0 0.0028 9.6E-08 63.9 3.2 39 895-933 7-46 (174)
406 1cke_A CK, MSSA, protein (cyti 96.0 0.002 6.7E-08 67.1 2.1 56 894-949 5-73 (227)
407 1j8m_F SRP54, signal recogniti 96.0 0.00082 2.8E-08 73.8 -1.1 47 169-219 89-136 (297)
408 3m6a_A ATP-dependent protease 96.0 0.0016 5.5E-08 77.5 1.4 49 882-933 97-145 (543)
409 2www_A Methylmalonic aciduria 96.0 0.0015 5.2E-08 73.3 0.8 27 892-918 72-98 (349)
410 2p5t_B PEZT; postsegregational 96.0 0.0015 5.1E-08 69.8 0.7 41 174-219 28-68 (253)
411 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.023 7.8E-07 60.1 10.0 27 176-202 37-63 (262)
412 1sxj_E Activator 1 40 kDa subu 95.9 0.0018 6.3E-08 72.1 1.3 55 897-952 39-94 (354)
413 2if2_A Dephospho-COA kinase; a 95.9 0.0031 1E-07 64.6 2.8 21 180-200 3-23 (204)
414 2b8t_A Thymidine kinase; deoxy 95.9 0.0099 3.4E-07 62.3 6.6 53 341-399 89-150 (223)
415 3d8b_A Fidgetin-like protein 1 95.8 0.038 1.3E-06 62.0 11.6 27 176-202 115-141 (357)
416 3cm0_A Adenylate kinase; ATP-b 95.8 0.0042 1.4E-07 62.4 3.3 27 176-202 2-28 (186)
417 1ega_A Protein (GTP-binding pr 95.8 0.0033 1.1E-07 69.0 2.5 65 324-395 101-169 (301)
418 1qhx_A CPT, protein (chloramph 95.7 0.004 1.4E-07 62.0 2.8 26 178-203 3-28 (178)
419 3t61_A Gluconokinase; PSI-biol 95.7 0.0028 9.4E-08 64.9 1.7 25 178-202 18-42 (202)
420 3auy_A DNA double-strand break 95.7 0.005 1.7E-07 69.6 3.8 31 168-199 16-46 (371)
421 1sxj_C Activator 1 40 kDa subu 95.6 0.0012 4.1E-08 73.6 -1.7 41 165-205 31-73 (340)
422 2yvu_A Probable adenylyl-sulfa 95.6 0.0039 1.3E-07 62.9 2.2 29 890-918 9-37 (186)
423 3kb2_A SPBC2 prophage-derived 95.6 0.0056 1.9E-07 60.4 3.2 24 180-203 3-26 (173)
424 1ls1_A Signal recognition part 95.6 0.0028 9.6E-08 69.4 1.0 46 885-934 91-136 (295)
425 1vma_A Cell division protein F 95.6 0.0044 1.5E-07 68.2 2.5 45 887-933 97-141 (306)
426 1m7g_A Adenylylsulfate kinase; 95.5 0.0041 1.4E-07 64.2 2.0 42 890-933 21-64 (211)
427 3t61_A Gluconokinase; PSI-biol 95.5 0.0035 1.2E-07 64.1 1.4 25 894-918 18-42 (202)
428 2px0_A Flagellar biosynthesis 95.5 0.0048 1.6E-07 67.6 2.5 27 892-918 103-129 (296)
429 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0056 1.9E-07 69.6 3.0 46 887-932 15-69 (396)
430 1y63_A LMAJ004144AAA protein; 95.5 0.0048 1.6E-07 62.3 2.2 32 886-917 2-33 (184)
431 3kb2_A SPBC2 prophage-derived 95.5 0.0049 1.7E-07 60.8 2.2 33 896-928 3-35 (173)
432 3cmw_A Protein RECA, recombina 95.4 0.017 5.9E-07 76.3 7.8 30 174-203 728-757 (1706)
433 2rhm_A Putative kinase; P-loop 95.4 0.0066 2.2E-07 61.2 3.1 27 176-202 3-29 (193)
434 1jjv_A Dephospho-COA kinase; P 95.4 0.0053 1.8E-07 62.9 2.3 21 896-916 4-24 (206)
435 2dhr_A FTSH; AAA+ protein, hex 95.4 0.0053 1.8E-07 72.1 2.5 47 882-934 54-100 (499)
436 1qhx_A CPT, protein (chloramph 95.4 0.0068 2.3E-07 60.3 3.0 29 893-921 2-30 (178)
437 1kht_A Adenylate kinase; phosp 95.4 0.0078 2.7E-07 60.4 3.4 26 178-203 3-28 (192)
438 2p5t_B PEZT; postsegregational 95.3 0.0053 1.8E-07 65.4 2.2 46 882-932 21-66 (253)
439 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0022 7.5E-08 71.7 -0.9 37 882-918 10-48 (359)
440 2v1u_A Cell division control p 95.3 0.016 5.6E-07 64.7 6.3 28 176-203 42-69 (387)
441 2zej_A Dardarin, leucine-rich 95.3 0.0078 2.7E-07 60.3 3.0 23 180-202 4-26 (184)
442 2zr9_A Protein RECA, recombina 95.3 0.0056 1.9E-07 68.7 2.2 79 884-965 49-131 (349)
443 1q57_A DNA primase/helicase; d 95.3 0.15 5.1E-06 59.9 14.4 38 165-202 229-266 (503)
444 3r20_A Cytidylate kinase; stru 95.2 0.0089 3E-07 63.1 3.3 24 179-202 10-33 (233)
445 1q3t_A Cytidylate kinase; nucl 95.2 0.0087 3E-07 62.9 3.1 28 175-202 13-40 (236)
446 1ex7_A Guanylate kinase; subst 95.2 0.006 2.1E-07 62.1 1.8 23 896-918 3-25 (186)
447 2v54_A DTMP kinase, thymidylat 95.2 0.0098 3.4E-07 60.5 3.4 26 177-202 3-28 (204)
448 3trf_A Shikimate kinase, SK; a 95.1 0.01 3.4E-07 59.6 3.3 26 177-202 4-29 (185)
449 2ze6_A Isopentenyl transferase 95.1 0.0092 3.1E-07 63.7 3.2 25 179-203 2-26 (253)
450 3r20_A Cytidylate kinase; stru 95.1 0.0065 2.2E-07 64.1 1.9 24 895-918 10-33 (233)
451 2zej_A Dardarin, leucine-rich 95.1 0.0057 1.9E-07 61.4 1.3 22 896-917 4-25 (184)
452 3lw7_A Adenylate kinase relate 95.1 0.01 3.5E-07 58.3 3.2 19 180-198 3-21 (179)
453 2plr_A DTMP kinase, probable t 95.1 0.012 4E-07 60.1 3.7 28 177-204 3-30 (213)
454 1ly1_A Polynucleotide kinase; 95.0 0.012 4.1E-07 58.4 3.5 22 179-200 3-24 (181)
455 2jaq_A Deoxyguanosine kinase; 95.0 0.0084 2.9E-07 60.9 2.3 24 180-203 2-25 (205)
456 1ex7_A Guanylate kinase; subst 95.0 0.0097 3.3E-07 60.6 2.7 25 179-203 2-26 (186)
457 2ze6_A Isopentenyl transferase 94.9 0.0084 2.9E-07 64.0 2.3 32 896-927 3-34 (253)
458 3iij_A Coilin-interacting nucl 94.9 0.011 3.6E-07 59.2 2.8 26 177-202 10-35 (180)
459 3t34_A Dynamin-related protein 94.9 0.0091 3.1E-07 67.1 2.6 34 882-918 25-58 (360)
460 2if2_A Dephospho-COA kinase; a 94.9 0.0087 3E-07 61.1 2.2 21 896-916 3-23 (204)
461 1xjc_A MOBB protein homolog; s 94.9 0.0094 3.2E-07 59.7 2.3 38 179-216 5-42 (169)
462 2r6a_A DNAB helicase, replicat 94.9 0.0061 2.1E-07 70.9 1.1 36 883-918 192-227 (454)
463 1via_A Shikimate kinase; struc 94.9 0.0089 3E-07 59.6 2.0 23 180-202 6-28 (175)
464 3k53_A Ferrous iron transport 94.9 0.017 5.8E-07 62.1 4.4 23 896-918 5-27 (271)
465 3hu3_A Transitional endoplasmi 94.9 0.037 1.3E-06 64.8 7.6 28 175-202 235-262 (489)
466 2wwf_A Thymidilate kinase, put 94.8 0.013 4.6E-07 59.9 3.3 27 176-202 8-34 (212)
467 1gvn_B Zeta; postsegregational 94.8 0.013 4.4E-07 63.8 3.3 36 176-216 31-66 (287)
468 2c95_A Adenylate kinase 1; tra 94.8 0.013 4.3E-07 59.2 3.1 27 176-202 7-33 (196)
469 1vht_A Dephospho-COA kinase; s 94.8 0.014 4.8E-07 60.3 3.4 24 177-200 3-26 (218)
470 3ihw_A Centg3; RAS, centaurin, 94.8 0.024 8.1E-07 56.9 4.9 22 180-201 22-43 (184)
471 1gtv_A TMK, thymidylate kinase 94.8 0.0051 1.7E-07 63.2 -0.1 25 180-204 2-26 (214)
472 2dy1_A Elongation factor G; tr 94.7 0.0051 1.7E-07 75.0 -0.2 43 890-933 5-47 (665)
473 3cmw_A Protein RECA, recombina 94.7 0.15 5.1E-06 67.6 13.4 35 167-201 370-406 (1706)
474 1gtv_A TMK, thymidylate kinase 94.7 0.0067 2.3E-07 62.3 0.6 23 896-918 2-24 (214)
475 1nn5_A Similar to deoxythymidy 94.6 0.015 5.2E-07 59.5 3.2 28 176-203 7-34 (215)
476 1fzq_A ADP-ribosylation factor 94.6 0.022 7.6E-07 56.8 4.3 40 894-933 16-61 (181)
477 2rhm_A Putative kinase; P-loop 94.6 0.013 4.5E-07 58.9 2.7 27 892-918 3-29 (193)
478 1tev_A UMP-CMP kinase; ploop, 94.6 0.018 6.1E-07 57.8 3.6 26 177-202 2-27 (196)
479 3iev_A GTP-binding protein ERA 94.6 0.022 7.4E-07 62.7 4.5 27 892-919 9-35 (308)
480 1aky_A Adenylate kinase; ATP:A 94.6 0.017 5.9E-07 59.8 3.5 27 176-202 2-28 (220)
481 3ihw_A Centg3; RAS, centaurin, 94.6 0.021 7.3E-07 57.2 4.0 39 896-934 22-67 (184)
482 2bwj_A Adenylate kinase 5; pho 94.6 0.0057 2E-07 62.0 -0.3 27 176-202 10-36 (199)
483 1nks_A Adenylate kinase; therm 94.5 0.017 5.9E-07 57.9 3.3 24 180-203 3-26 (194)
484 3cm0_A Adenylate kinase; ATP-b 94.5 0.011 3.8E-07 59.2 1.9 26 892-917 2-27 (186)
485 1xx6_A Thymidine kinase; NESG, 94.5 0.047 1.6E-06 55.7 6.4 53 341-399 81-142 (191)
486 3lxx_A GTPase IMAP family memb 94.5 0.013 4.4E-07 61.6 2.3 24 896-919 31-54 (239)
487 1kht_A Adenylate kinase; phosp 94.5 0.014 4.8E-07 58.5 2.4 26 893-918 2-27 (192)
488 3k53_A Ferrous iron transport 94.4 0.016 5.6E-07 62.2 3.0 23 180-202 5-27 (271)
489 1ko7_A HPR kinase/phosphatase; 94.4 0.03 1E-06 61.5 5.0 36 165-201 132-167 (314)
490 1uf9_A TT1252 protein; P-loop, 94.4 0.019 6.7E-07 58.1 3.3 23 179-201 9-31 (203)
491 3lxw_A GTPase IMAP family memb 94.4 0.026 8.8E-07 59.9 4.4 24 895-918 22-45 (247)
492 1jal_A YCHF protein; nucleotid 94.3 0.025 8.7E-07 63.5 4.3 23 179-201 3-25 (363)
493 2v54_A DTMP kinase, thymidylat 94.3 0.017 5.7E-07 58.8 2.5 26 893-918 3-28 (204)
494 1xjc_A MOBB protein homolog; s 94.3 0.018 6.1E-07 57.6 2.6 37 896-932 6-43 (169)
495 3q85_A GTP-binding protein REM 94.3 0.03 1E-06 54.5 4.3 37 897-933 5-50 (169)
496 1gvn_B Zeta; postsegregational 94.3 0.019 6.5E-07 62.5 3.0 36 892-931 31-66 (287)
497 2jaq_A Deoxyguanosine kinase; 94.2 0.014 4.9E-07 59.1 1.9 23 896-918 2-24 (205)
498 3cbq_A GTP-binding protein REM 94.2 0.029 9.8E-07 56.9 4.1 38 896-933 25-71 (195)
499 2h57_A ADP-ribosylation factor 94.2 0.028 9.7E-07 56.2 4.0 39 895-933 22-68 (190)
500 3trf_A Shikimate kinase, SK; a 94.2 0.016 5.5E-07 58.1 2.0 26 893-918 4-29 (185)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.2e-53 Score=550.73 Aligned_cols=257 Identities=22% Similarity=0.308 Sum_probs=198.9
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCC--CceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
++....++|+.++++..++ +.+ ....+... ...+|+|+|+++.++.
T Consensus 380 ~~~~~s~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~I~~~nvsF~Y~~-------------------------- 427 (1321)
T 4f4c_A 380 GTAQGAASGIYEVLDRKPV-----IDS-SSKAGRKDMKIKGDITVENVHFTYPS-------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHTTTSCC-----SSC-SSSCCCCCCCCCCCEEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccc-cccccccCCCCCCcEEEEEeeeeCCC--------------------------
Confidence 4566677888777765443 111 11122222 2457999999998631
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
...+.+|+|||++|+||+++||+||||||||||+++|.|+++|+ +|+|++||+++++... ++.++||+|
T Consensus 428 -----~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q 499 (1321)
T 4f4c_A 428 -----RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQ 499 (1321)
T ss_dssp -----STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred -----CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCC
Confidence 12346999999999999999999999999999999999999998 9999999999988764 467999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++. +++.||+|||.|+.. ...++. ..++....+. +. .+-.|++..|
T Consensus 500 ~~~-Lf~~TI~eNI~~g~~----~~~~~~---------------------v~~a~~~a~l------~~--~i~~lp~G~~ 545 (1321)
T 4f4c_A 500 EPA-LFNCTIEENISLGKE----GITREE---------------------MVAACKMANA------EK--FIKTLPNGYN 545 (1321)
T ss_dssp SCC-CCSEEHHHHHHTTCT----TCCHHH---------------------HHHHHHHTTC------HH--HHHHSTTTTS
T ss_pred cce-eeCCchhHHHhhhcc----cchHHH---------------------HHHHHHHccc------hh--HHHcCCCCCc
Confidence 765 567899999999742 111111 1111111110 11 1335789999
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
|.||++. ..||||||||++||||++++|+||+||||||+||+.+...|.++|+++. .++|+|+..|+. .+...||
T Consensus 546 T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD 620 (1321)
T 4f4c_A 546 TLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNAD 620 (1321)
T ss_dssp SEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCS
T ss_pred cEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccH--HHHHhCC
Confidence 9999765 4699999999999999999999999999999999999999999999875 467887766554 5778999
Q ss_pred eEEEecCCeEEEecCHHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++|+|+++|+++++++
T Consensus 621 ~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 621 LIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEEETTEEEEEECHHHHHT
T ss_pred EEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.6e-48 Score=505.30 Aligned_cols=257 Identities=20% Similarity=0.326 Sum_probs=191.6
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCC--CCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhh
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (991)
+.....++|+.++++..++ ..+ ....+.+ ....+++|+|+++.+..
T Consensus 352 ~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~-------------------------- 399 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS-------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----CCc-ccccCCCCCCCCCeEEEEEEEEEcCC--------------------------
Confidence 3455566777777665443 000 0011111 22457999999987621
Q ss_pred hcCCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEec
Q 001957 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (991)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (991)
.....+|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|
T Consensus 400 -----~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 471 (1284)
T 3g5u_A 400 -----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQ 471 (1284)
T ss_dssp -----TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECS
T ss_pred -----CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcC
Confidence 11245999999999999999999999999999999999999998 9999999999876654 357999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
++.+++ .||+||+.|+... ...+. +.+..+.++ .+.. +..|++..|
T Consensus 472 ~~~l~~-~ti~eNi~~g~~~----~~~~~---~~~~~~~~~------------------------~~~~--i~~l~~g~~ 517 (1284)
T 3g5u_A 472 EPVLFA-TTIAENIRYGRED----VTMDE---IEKAVKEAN------------------------AYDF--IMKLPHQFD 517 (1284)
T ss_dssp SCCCCS-SCHHHHHHHHCSS----CCHHH---HHHHHHHTT------------------------CHHH--HHHSTTGGG
T ss_pred CCccCC-ccHHHHHhcCCCC----CCHHH---HHHHHHHhC------------------------cHHH--HHhcccccc
Confidence 887765 5999999997421 11111 111111100 0111 234677889
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD 393 (991)
|.+|+ ....|||||||||+|||||+.+|+||+||||||+||+.+...+.+.|+++. .++|+|+. +|....+ ..||
T Consensus 518 t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~i-tH~l~~i-~~~d 592 (1284)
T 3g5u_A 518 TLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVI-AHRLSTV-RNAD 592 (1284)
T ss_dssp CCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEE-CSCHHHH-TTCS
T ss_pred ccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEE-ecCHHHH-HcCC
Confidence 99985 456799999999999999999999999999999999999999999998864 35666654 5555555 5599
Q ss_pred eEEEecCCeEEEecCHHHHHH
Q 001957 394 DIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (991)
+|++|++|+++++|+++++++
T Consensus 593 ~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 593 VIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp EEEECSSSCCCCEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999874
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.4e-43 Score=396.07 Aligned_cols=207 Identities=23% Similarity=0.325 Sum_probs=180.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc------cceEEEEecCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNH 237 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 237 (991)
.+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|+..+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876542 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+.+..+.... +....++++|+.+||.+.+|.
T Consensus 117 ~~~~TV~env~~~~~~~~~~~~----------------------------------~~~~~v~~lL~~vgL~~~~~~--- 159 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPKD----------------------------------EVKRRVTELLSLVGLGDKHDS--- 159 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCHH----------------------------------HHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCchHhcC---
Confidence 9999999999998776543110 112246778999999887764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.+|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.++.+.|+|+ ++|...++.++||+|++
T Consensus 160 --~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~-vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 160 --YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAV 236 (366)
T ss_dssp --CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEEEE
Confidence 456899999999999999999999999999999999999999999999987654555555 56788899999999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999875
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.2e-43 Score=392.82 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC----CCccc-cceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVP-QRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 45999999999999999999999999999999999999998 99999999987 32222 467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+.+.++.... +....++++++.+||.+..|.
T Consensus 94 ~ltV~eni~~~l~~~~~~~~----------------------------------~~~~~v~~~l~~~gL~~~~~r----- 134 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTA----------------------------------QERQRIEAMLELTGISELAGR----- 134 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSH----------------------------------HHHHHHHHHHHHHTCGGGTTS-----
T ss_pred CCCHHHHHHHHHHHcCCChH----------------------------------HHHHHHHHHHHHcCCchHhcC-----
Confidence 99999999998765432110 011245678999999887764
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..+.|+ +.++|+..++..+||+|++|+
T Consensus 135 ~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tv-i~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA-VFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEE-EEECCCHHHHHHHCSEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHHCCEEEEEE
Confidence 4568999999999999999999999999999999999999999998888766555554 556778899999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998853
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-42 Score=394.23 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876544 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..| +++.+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~-----r~p~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLD-----RKPKA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----CCGGG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-----CChhH
Confidence 999999987654211 011234677899999988776 45568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE-EECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654555555 57788999999999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998853
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.2e-42 Score=368.51 Aligned_cols=207 Identities=23% Similarity=0.262 Sum_probs=170.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 9999999999876543 2359999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc-cccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMV 316 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 316 (991)
++.+||+||+.++......+... + .+....+.++++.+||.+.. |
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~-------~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMS-------G------------------------EERRKRALECLKMAELEERFAN--- 140 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCC-------H------------------------HHHHHHHHHHHHHTTCCGGGTT---
T ss_pred CCCCcHHHHHHHHHHhhhccCCC-------H------------------------HHHHHHHHHHHHHCCCChhhhh---
Confidence 99999999999987543111000 0 00112356688999997643 5
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.+.+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.+..+.|+|+++| +.. +.++||+|+
T Consensus 141 --~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH-d~~-~~~~~d~i~ 216 (235)
T 3tif_A 141 --HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DIN-VARFGERII 216 (235)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHH-HHTTSSEEE
T ss_pred --CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC-CHH-HHHhCCEEE
Confidence 4456899999999999999999999999999999999999999999999987644677766654 444 568999999
Q ss_pred EecCCeEEEecCHHHH
Q 001957 397 LLSDGQIVYQGPRELV 412 (991)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (991)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-42 Score=385.48 Aligned_cols=207 Identities=27% Similarity=0.366 Sum_probs=178.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++.. +. +....++++++.+||++..|. ++.+
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r-----~~~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDR-----KPTQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTS-----CGGG
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcC-----Chhh
Confidence 99999987543221 00 012246778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY-VTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHHH
Q 001957 404 VYQGPRELVLE 414 (991)
Q Consensus 404 v~~G~~~~~~~ 414 (991)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.7e-42 Score=374.37 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=174.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc-----cccceEEEEecCC-CCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD-NHIG 239 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d-~~~~ 239 (991)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 4999999999999999999999999999999999999998 99999999998421 1236799999985 3556
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
.+||+||+.|+....+... .+....++++++.+||.+..|..
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~---- 140 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKP---- 140 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSB----
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC----
Confidence 8999999999876543210 00112456789999998877654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|+ ++|...++.++||+|++|+
T Consensus 141 -~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~-vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 141 -THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII-ATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp -GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE-EESCCSSGGGGCSEEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE-EecCHHHHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999987334556555 5677889999999999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999998753
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.2e-42 Score=372.12 Aligned_cols=204 Identities=27% Similarity=0.358 Sum_probs=176.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45999999999999999999999999999999999999998 9999999999876543 35689999999888999
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.|+....... .....++++++.+||.+..|.. +
T Consensus 101 tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~-----~ 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRD-----Y 139 (266)
T ss_dssp BHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSB-----G
T ss_pred CHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCC-----c
Confidence 9999999976432110 0112356789999998877654 4
Q ss_pred CCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 322 RGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
..|||||||||+||+||+. +|++|||||||+|||+.++.++++.|+++.+. ++++|+.++|+.+++.++||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 5899999999999999999 99999999999999999999999999998764 4445555678888999999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-41 Score=362.75 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=169.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-------cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 35999999999999999999999999999999999999998 9999999999865432 1569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+....+... . +....++++++.+||.+..+..
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-- 137 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------K------------------------EAKERGEYLLSELGLGDKLSRK-- 137 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCTTCTTCC--
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCC--
Confidence 999999999999765432110 0 0112356789999998877654
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
+.+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +.|+|+++ |+...+ ++||+|++
T Consensus 138 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vt-Hd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 138 ---PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVT-HERELA-ELTHRTLE 211 (224)
T ss_dssp ---GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEC-SCHHHH-TTSSEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEc-CCHHHH-HhCCEEEE
Confidence 4689999999999999999999999999999999999999999999998764 66666655 555555 89999999
Q ss_pred ecCCeEEEecCH
Q 001957 398 LSDGQIVYQGPR 409 (991)
Q Consensus 398 L~~G~iv~~G~~ 409 (991)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999874
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-41 Score=385.16 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=178.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... .+....++++++.+||++..|. .+.+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r-----~~~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNR-----YPWQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTC-----CGGG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhC-----Chhh
Confidence 999999876543210 0011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY-VTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE-ECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999885
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.7e-41 Score=367.44 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Ccc---ccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|+..+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999999884 111 1356999999998999
Q ss_pred CCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
.+||+||+.|+. +..+... . +....++++++.+||.+..|..
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~--- 156 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------E------------------------KAEAKAMELLDKVGLKDKAHAY--- 156 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSC---
T ss_pred CCCHHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcCC---
Confidence 999999999964 3322110 0 0112356789999998877654
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+..++.++||+|++|
T Consensus 157 --~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~-vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 157 --PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp --GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHHHHHCSEEEEE
T ss_pred --hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE-EcCCHHHHHHhCCEEEEE
Confidence 468999999999999999999999999999999999999999999999865 3555555 567788889999999999
Q ss_pred cCCeEEEecCHHHHH
Q 001957 399 SDGQIVYQGPRELVL 413 (991)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (991)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998875
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.3e-41 Score=384.56 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=177.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC------ccc-cceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------FVP-QRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~------~~~-~~~~~yv~Q~d~~ 237 (991)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 45999999999999999999999999999999999999998 9999999998754 322 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+||+.|+.+.++... . +....++++++.+||++..|.
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r--- 135 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNR--- 135 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTC---
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcC---
Confidence 999999999999876543210 0 011245678999999887764
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil 397 (991)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++
T Consensus 136 --~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 136 --KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp --CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEE
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-ECCCHHHHHHhCCEEEE
Confidence 456899999999999999999999999999999999999999999999987644666555 46778899999999999
Q ss_pred ecCCeEEEecCHHHHH
Q 001957 398 LSDGQIVYQGPRELVL 413 (991)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (991)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999885
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-41 Score=384.66 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... . +....++++++.+||.+..|. ++.+
T Consensus 101 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r-----~~~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNR-----YPAQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----CTTT
T ss_pred HHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcC-----Chhh
Confidence 999999865432210 0 011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644666555 46778899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999885
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-41 Score=368.86 Aligned_cols=205 Identities=24% Similarity=0.323 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC----------cc------ccceE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----------FV------PQRTA 228 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~----------~~------~~~~~ 228 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999998851 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHH-HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC
Q 001957 229 AYISQHDNHIGEMTVRETLAFSA-RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (991)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (991)
+||+|+..+++.+||+||+.|+. +..+... . +....++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------H------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------H------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcC
Confidence 99999999999999999999964 3322110 0 01123567899999
Q ss_pred Cccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 308 LDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 308 L~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
|.+. .+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+..
T Consensus 142 L~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~v-tHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVV-THEMG 214 (262)
T ss_dssp CCHHHHTSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEE-CSCHH
T ss_pred CCchhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHH
Confidence 9877 6654 468999999999999999999999999999999999999999999999865 36666654 56778
Q ss_pred hhHhhcCeEEEecCCeEEEecCHHHHH
Q 001957 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 387 ~~~~lfD~vilL~~G~iv~~G~~~~~~ 413 (991)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 888999999999999999999998875
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-41 Score=383.37 Aligned_cols=204 Identities=21% Similarity=0.279 Sum_probs=176.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC-----cc-ccceEEEEecCCCCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-----FV-PQRTAAYISQHDNHIGE 240 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (991)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 22 24789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+||+||+.|+.+.++... . +....++++++.+||++..|. .
T Consensus 97 ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~~-----~ 137 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNH-----F 137 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----C
T ss_pred CCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcC-----C
Confidence 999999999876543210 0 011245678999999887764 4
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
+.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++
T Consensus 138 ~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEEC
Confidence 56899999999999999999999999999999999999999999999987644666555 46778899999999999999
Q ss_pred CeEEEecCHHHHH
Q 001957 401 GQIVYQGPRELVL 413 (991)
Q Consensus 401 G~iv~~G~~~~~~ 413 (991)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999885
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.5e-41 Score=381.02 Aligned_cols=206 Identities=27% Similarity=0.390 Sum_probs=178.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (991)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999999865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
+||+.|+.+.++... . +....++++++.+||++..|. ++.+
T Consensus 105 ~eni~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~r-----~~~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------D------------------------EMDARVRELLRFMRLESYANR-----FPHE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTS-----CGGG
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcC-----Cccc
Confidence 999999876543210 0 011245778999999887764 4568
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++.+.|+|+ ++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~-vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-ECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644656555 56788899999999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999875
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.6e-41 Score=380.56 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=182.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc-cceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999999875433 467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+.++... . ..++++++.+||++..|. ++.+||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~-----~~~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR-----NPLTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS-----CGGGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC-----ChhhCC
Confidence 9999875432110 0 135678999999887765 456899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++.+.|+|+ ++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~-vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999987644556555 4677889999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 001957 406 QGPRELVLEFFASMGFRCPKRKGVADFLQ 434 (991)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 434 (991)
.|+++++. ..|.....+.|+-
T Consensus 209 ~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 209 VGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EECHHHHH--------SSCCTTHHHHHHC
T ss_pred ECCHHHHH--------hCcccHHHHHhcC
Confidence 99999874 3455555566653
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.8e-42 Score=381.17 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 35999999999999999999999999999999999999998 9999999999977543 46799999987766 57
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+|||.|+..... .+...+ ..+..+ ....+ ..++...+|.+| +..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~---~~~~~~------------------------l~~~i--~~lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEA---AAQAAG------------------------IHDAI--MAFPEGYRTQVG-ERG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHH---HHHHHT------------------------CHHHH--HHSTTGGGCEES-TTS
T ss_pred cHHHHHHhhcccCC----HHHHHH---HHHHhC------------------------cHHHH--HhccchhhhHhc-CCc
Confidence 99999998753210 000000 000000 01111 235557788887 456
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.+ ++|+|+ ++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIV-VAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EEcChHHHHc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999753 566665 5566666655 9999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.5e-41 Score=366.24 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999999865432 3469999999988999
Q ss_pred CCHHHHHHHHHHh--cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 241 MTVRETLAFSARC--QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 241 lTV~E~l~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+||+||+.++... .+. .....+ ... ... ..+....++++++.+||++..+..
T Consensus 97 ~tv~enl~~~~~~~~~~~------~~~~~~----~~~-~~~------------~~~~~~~~~~~l~~~~l~~~~~~~--- 150 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP------LNSLFY----KKW-IPK------------EEEMVEKAFKILEFLKLSHLYDRK--- 150 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH------HHHHHH----CSS-CCC------------CHHHHHHHHHHHHHTTCGGGTTSB---
T ss_pred CcHHHHHHHHHhhhccCc------cccccc----ccc-cCC------------HHHHHHHHHHHHHHcCCchhhCCC---
Confidence 9999999997532 110 000000 000 000 000112356789999998877655
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|+ ++|..+++.++||+|++|
T Consensus 151 --~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 151 --AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLI-IEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp --GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCCSTTGGGCSEEEEE
T ss_pred --chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999865 3556555 466778899999999999
Q ss_pred cCCeEEEecCHHH
Q 001957 399 SDGQIVYQGPREL 411 (991)
Q Consensus 399 ~~G~iv~~G~~~~ 411 (991)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999888
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-41 Score=363.07 Aligned_cols=206 Identities=25% Similarity=0.309 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999986421 2357999999998999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|.....+... . +....++++++.+||++..+.. +.
T Consensus 105 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~-----~~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------S------------------------EIEEMVERATEIAGLGEKIKDR-----VS 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHHCCGGGGGSB-----GG
T ss_pred HHHHHHHHHHHcCCCh----------H------------------------HHHHHHHHHHHHCCCchHhcCC-----hh
Confidence 9999999765432110 0 0112356688999998877754 45
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiiv-tHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVS-SHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-ECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEE-cCCHHHHHHHCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999865 45565554 567778889999999999999
Q ss_pred EEEecCHHHHHH
Q 001957 403 IVYQGPRELVLE 414 (991)
Q Consensus 403 iv~~G~~~~~~~ 414 (991)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=358.80 Aligned_cols=204 Identities=22% Similarity=0.322 Sum_probs=170.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999999865432 2459999999989999
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcC-CcccccccccCc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (991)
+||+||+.|+.... .. +. +....++.+++.++ |.+..+.
T Consensus 96 ltv~enl~~~~~~~-~~-~~---------------------------------~~~~~~~~~l~~~~~l~~~~~~----- 135 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-KE---------------------------------GIKRDLEWIFSLFPRLKERLKQ----- 135 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-SS---------------------------------HHHHHHHHHHHHCHHHHTTTTS-----
T ss_pred CcHHHHHHHhhhcC-CC-HH---------------------------------HHHHHHHHHHHHcccHhhHhcC-----
Confidence 99999999864211 00 00 00123456788884 8766654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++.++||+|++|+
T Consensus 136 ~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~v-tHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 136 LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLV-EQNALGALKVAHYGYVLE 213 (240)
T ss_dssp BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEE-ESCHHHHHHHCSEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999865 56666665 566778899999999999
Q ss_pred CCeEEEecCHHHHH
Q 001957 400 DGQIVYQGPRELVL 413 (991)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (991)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=358.35 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=172.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
+|+|||+.+++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999998 999999999986432 2467999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+.+..+. ... ...++++++.+||.+..|.. +..||
T Consensus 90 nl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~l~~~~~~~-----~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VER--------------------------DRRVREMAEKLGIAHLLDRK-----PARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTTCTTTTTCC-----GGGSC
T ss_pred HHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcCCHHHhcCC-----hhhCC
Confidence 99997543210 000 12356688999998877654 46899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.++.+.|+|++ +|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV-THDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE-ESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865446676665 566778899999999999999999
Q ss_pred ecCHHHHH
Q 001957 406 QGPRELVL 413 (991)
Q Consensus 406 ~G~~~~~~ 413 (991)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998875
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.9e-40 Score=356.86 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=172.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 45999999999999999999999999999999999999998 999999999876432346799999984 56788999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--ccccccccCccc
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMVGDEMI 321 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (991)
+||+.|+.... ... . +....++++++.+||. +..+.. +
T Consensus 97 ~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD--------------------R--------------DPVPLVKKAMEFVGLDFDSFKDRV-----P 136 (266)
T ss_dssp HHHHHHTTTTT-CTT--------------------S--------------CSHHHHHHHHHHTTCCHHHHTTCC-----G
T ss_pred HHHHHHHHHhc-CCH--------------------H--------------HHHHHHHHHHHHcCcCCcccccCC-----h
Confidence 99999875321 100 0 0112356688999998 776654 4
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+. +.|+|++ +|...++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~v-tHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILI-SHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE-CSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999998653 5565554 56677888999999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.1e-40 Score=358.63 Aligned_cols=208 Identities=29% Similarity=0.313 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC--Ccc---ccceEEEEecCCCCC-
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI- 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~- 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|+..++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999999875 322 235799999986543
Q ss_pred -CCCCHHHHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 239 -GEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 239 -~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+.+||+||+.|+.... +... ... .+....++++++.+||.+..+..+
T Consensus 111 ~~~ltv~enl~~~~~~~~~~~~-------------------~~~------------~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGVYQ-------------------DID------------DEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp CTTSBHHHHHHTTC----------------------------CC------------HHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCCHHHHHHhhhhhcccccc-------------------CCc------------HHHHHHHHHHHHHcCChhHhcCCh
Confidence 3569999999864210 0000 000 001123567899999988776554
Q ss_pred cCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceE--EEEEecCCchhHhhcCe
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDD 394 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~--ii~i~q~~~~~~~lfD~ 394 (991)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+ |++ +|...++.++||+
T Consensus 160 -----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iiv-tHd~~~~~~~~d~ 232 (279)
T 2ihy_A 160 -----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYV-THFIEEITANFSK 232 (279)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEE-ESCGGGCCTTCCE
T ss_pred -----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEE-ecCHHHHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 6676 554 5677788999999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 233 v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 233 ILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEEETTEEEEEEEHHHHC
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999988763
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.3e-39 Score=348.51 Aligned_cols=200 Identities=26% Similarity=0.378 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999999875432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-------ccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-------ADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~dt 314 (991)
||+||+.|+... ... ..++++++.++|.+. .++
T Consensus 98 tv~enl~~~~~~----~~~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----MSV------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----CCH------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----CCH------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999886310 000 011223444444432 234
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++. |....+ ..||+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivt-H~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIA-HRLSTV-KNADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEEC-SSGGGG-TTSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEe-CCHHHH-HhCCE
Confidence 443 4467899999999999999999999999999999999999999999999983 366666665 455555 45999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.1e-39 Score=349.51 Aligned_cols=205 Identities=23% Similarity=0.291 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK--LDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~--~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+ ++|+ +|+|.++|+++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 3599999999999999999999999999999999998 6777 9999999999865432 23489999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC-cccccccc
Q 001957 239 GEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMV 316 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (991)
+.+||+||+.++... .+.... . .+....++++++.+|| .+..|..+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~---------------------~-----------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREVG---------------------V-----------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCCC---------------------H-----------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccCC---------------------H-----------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999987531 110000 0 0011235668899999 46666544
Q ss_pred cCcccCC-CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-cCe
Q 001957 317 GDEMIRG-ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDD 394 (991)
Q Consensus 317 g~~~~~~-LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l-fD~ 394 (991)
.. |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|++ +|+..++..+ ||+
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~v-tHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVI-THYQRILNYIQPDK 213 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEE-CSSSGGGGTSCCSE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEE-ecCHHHHHHhcCCE
Confidence 46 999999999999999999999999999999999999999999999854 45565555 5667778888 599
Q ss_pred EEEecCCeEEEecCHHH
Q 001957 395 IILLSDGQIVYQGPREL 411 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (991)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-38 Score=349.16 Aligned_cols=209 Identities=23% Similarity=0.370 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999999865332 356999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc--CCcccccccccCc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDE 319 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (991)
||+||+.|+.... .. .+ ++.+... ...++.+++.+ ||....+ +
T Consensus 108 tv~enl~~~~~~~--~~-~~---~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-ME---EITAVAM------------------------ESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HH---HHHHHHH------------------------HHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch-HH---HHHHHHH------------------------HHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999864211 00 00 0000000 01124466777 6655444 4
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|....+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv-tHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI-TQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE-CSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE-eCCHHHHH-hCCEEEEEE
Confidence 4568999999999999999999999999999999999999999999999764345666665 55555554 599999999
Q ss_pred CCeEEEecCHHHHHH
Q 001957 400 DGQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (991)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.2e-38 Score=345.95 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHI 238 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 238 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+. +|+ +|+|.++|+++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999994 566 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHHHH-hc---CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-cccc
Q 001957 239 GEMTVRETLAFSAR-CQ---GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCAD 313 (991)
Q Consensus 239 ~~lTV~E~l~f~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (991)
+.+||.|++.+... .. +.. ..+. .+....++++++.+||+ +..+
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~l~~~gl~~~~~~ 158 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQE--------------------TLDR-----------FDFQDLMEEKIALLKMPEDLLT 158 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCC--------------------CCCH-----------HHHHHHHHHHHHHTTCCTTTTT
T ss_pred ccccHHHHHHHHHHhhhhhhccc--------------------cCCH-----------HHHHHHHHHHHHHcCCChhHhc
Confidence 99999999987642 10 000 0000 00112456789999996 4555
Q ss_pred ccccCcccC-CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh-
Q 001957 314 TMVGDEMIR-GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391 (991)
Q Consensus 314 t~vg~~~~~-~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l- 391 (991)
.. +. +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+..++..+
T Consensus 159 ~~-----~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvii-vtHd~~~~~~~~ 231 (267)
T 2zu0_C 159 RS-----VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFII-VTHYQRILDYIK 231 (267)
T ss_dssp SB-----TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEE-ECSSGGGGGTSC
T ss_pred CC-----cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeeCHHHHHhhc
Confidence 43 34 5999999999999999999999999999999999999999999998754 4556555 45666777776
Q ss_pred cCeEEEecCCeEEEecCHHHHHHHHHhcCCC
Q 001957 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFR 422 (991)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (991)
||+|++|++|++++.|+++++.. ++..||.
T Consensus 232 ~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 232 PDYVHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp CSEEEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred CCEEEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 89999999999999999988753 4555554
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.6e-38 Score=341.44 Aligned_cols=198 Identities=17% Similarity=0.247 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 35999999999999999999999999999999999999998 999982 35699999999888999999
Q ss_pred HHHHHHHHhc-CCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 245 ETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
||+.|+.... +.... +. ......++++++.+||.+..+.. +..
T Consensus 85 enl~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-------------------PK------------SHDYQVAMQALDYLNLTHLAKRE-----FTS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-------------------CC------------HHHHHHHHHHHHHTTCGGGTTSB-----GGG
T ss_pred HHHHHhhhhhcccccC-------------------CC------------HHHHHHHHHHHHHcCChHHhcCC-----hhh
Confidence 9999975321 10000 00 00012356789999998877654 468
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+..+.|+|++ +|+..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT-THQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE-ESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCCEEEEEeCCe-
Confidence 999999999999999999999999999999999999999999999865335665554 567778889999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.6e-38 Score=341.36 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=164.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEE-EEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA-YISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (991)
+.+|+|||++++ |++++|+|||||||||||++|+|++ |+ +|+|.++|+++.....++.++ |++|+..+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 459999999999 9999999999999999999999999 98 999999999875321245789 99998766 8999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
+||+.+....... ....++++++.+||. +..+.. +.
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRK-----LY 127 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSB-----GG
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCC-----hh
Confidence 9999987542100 011245678999998 766644 46
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcC-eEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD-DIILLSDG 401 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD-~vilL~~G 401 (991)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++. . |+|+ ++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tvii-vtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGIL-VTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEE-EESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEE-EEcCHHHHHHhcCceEEEEECC
Confidence 899999999999999999999999999999999999999999999863 2 5555 4567778889999 99999999
Q ss_pred eEEEecCHHHHH
Q 001957 402 QIVYQGPRELVL 413 (991)
Q Consensus 402 ~iv~~G~~~~~~ 413 (991)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 32
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.6e-38 Score=380.56 Aligned_cols=257 Identities=23% Similarity=0.369 Sum_probs=192.3
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++ ..+..+....+....+++++|+++.+..
T Consensus 305 ~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 351 (578)
T 4a82_A 305 TQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYND---------------------------- 351 (578)
T ss_dssp HHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSCS----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcCC----------------------------
Confidence 4566677788777765543 1110011111223457999999887521
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
....+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 352 ----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 352 ----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp ----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred ----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.+++ .||+||+.++.. ....+ ++.+..+..+ .+. ....+++..||.
T Consensus 425 ~l~~-~tv~eni~~~~~----~~~~~---~~~~~~~~~~------------------------~~~--~~~~lp~g~~t~ 470 (578)
T 4a82_A 425 ILFS-DTVKENILLGRP----TATDE---EVVEAAKMAN------------------------AHD--FIMNLPQGYDTE 470 (578)
T ss_dssp CCCS-SBHHHHHGGGCS----SCCHH---HHHHHHHHTT------------------------CHH--HHHTSTTGGGCB
T ss_pred ccCc-ccHHHHHhcCCC----CCCHH---HHHHHHHHhC------------------------cHH--HHHhCcchhhhh
Confidence 7765 499999998631 11111 1111111000 001 133567788999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++. .++|+|++ +|..+.+ +.||+|
T Consensus 471 ~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~i-tH~l~~~-~~~d~i 545 (578)
T 4a82_A 471 VGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AHRLSTI-THADKI 545 (578)
T ss_dssp CCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEE-CSSGGGT-TTCSEE
T ss_pred hcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEE-ecCHHHH-HcCCEE
Confidence 984 556899999999999999999999999999999999999999999999874 35676665 4555555 569999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++.+
T Consensus 546 ~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-39 Score=345.67 Aligned_cols=202 Identities=23% Similarity=0.327 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45999999999999999999999999999999999999998 999999999986532 2467999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc-------
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT------- 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 314 (991)
||+||+.|+... ... ...++++++.++|.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999886311 000 0113445677777665443
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++.| ....+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH-~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAH-RLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECC-SHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeC-ChHHH-HhCCE
Confidence 333 4567899999999999999999999999999999999999999999999975 3667666654 44455 56999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.8e-38 Score=341.28 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|++++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3599999999999999999999999999999999999874 8999999999865432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CCcccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (991)
||+||+.|+.. . . .. + + +.+.++.+ ++++..||
T Consensus 108 tv~enl~~~~~-~-~-~~-~---~---------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D-A-TD-E---E---------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T-C-CH-H---H---------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C-C-CH-H---H---------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999998531 0 0 00 0 0 11122222 45566677
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+.|+|++. |....+ ..||+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivt-H~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIA-HRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEEC-SSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEc-CCHHHH-HhCCE
Confidence 765 4567899999999999999999999999999999999999999999999974 356666655 445555 46999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.7e-38 Score=340.23 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=168.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++| . |+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998854332 356999999988889999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|+||+.|+... .. . ...++++++.+||.+..+.. +.
T Consensus 90 v~e~l~~~~~~-~~--~------------------------------------~~~~~~~l~~~~l~~~~~~~-----~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT--R------------------------------------TELLNDVAGALALDDKLGRS-----TN 125 (249)
T ss_dssp HHHHHHTTCSS-TT--C------------------------------------HHHHHHHHHHTTCGGGTTSB-----GG
T ss_pred HHHHHHHhhcc-CC--c------------------------------------HHHHHHHHHHcCChhHhcCC-----hh
Confidence 99999986311 00 0 01245678999998877654 46
Q ss_pred CCChhHhHHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 323 GISGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~-------vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|+++.+. +.|+|+ ++|+...+..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvii-vtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVM-SSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE-ECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEE-EeCCHHHHHHhCCEE
Confidence 899999999999999999999 99999999999999999999999998653 556555 566777888999999
Q ss_pred EEecCCeEEEecCHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (991)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-38 Score=379.87 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 35999999999999999999999999999999999999998 9999999999876543 467999999887764 5
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++... ...+ ++.+..+..+ .+. ....|++..||.+|+ ..
T Consensus 432 tv~eni~~~~~~----~~~~---~~~~~~~~~~------------------------~~~--~i~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDD---EIVEAAKIAQ------------------------IHD--FIISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHH---HHHHHHHHTT------------------------CHH--HHHTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCC----CCHH---HHHHHHHHhC------------------------cHH--HHHhcccchhhHhcC-CC
Confidence 999999886421 1111 1111111100 011 123567788999984 56
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.| .... ...||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH-~l~~-~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQ-KIPT-ALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEES-CHHH-HTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEec-ChHH-HHhCCEEEEEECC
Confidence 6899999999999999999999999999999999999999999999874 4667766654 4444 4689999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=363.85 Aligned_cols=200 Identities=24% Similarity=0.251 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|+..+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 459999999999999999999999999999999999987 6 9999999999876554 368999999988876 7
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC---
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD--- 318 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (991)
||+||+.+.... . ...++++++.++|.+..+.....
T Consensus 109 tv~enl~~~~~~----~-------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S-------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C-------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C-------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999743210 0 01234467777877655433321
Q ss_pred ---cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 319 ---EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 319 ---~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++ +|+. ++...||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~v-tHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILC-EARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEE-CSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEE-EcCH-HHHHhCCEE
Confidence 2233499999999999999999999999999999999999999999999853 35555554 5554 566779999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999853
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.4e-38 Score=378.77 Aligned_cols=203 Identities=26% Similarity=0.402 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 35999999999999999999999999999999999999998 9999999999876543 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CCcccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (991)
||+||+.++..... +...+ .++++++.+ .+++..||
T Consensus 433 tv~eni~~~~~~~~-~~~~~------------------------------------~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS-SVTAE------------------------------------EIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT-TSCHH------------------------------------HHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc-ccCHH------------------------------------HHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998642100 00000 112233333 45667899
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+ ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.| ....+ +.||+
T Consensus 476 ~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH-~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAH-RLSTI-KNANM 550 (595)
T ss_dssp BCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECC-CHHHH-HHSSE
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEec-CHHHH-HcCCE
Confidence 9985 4578999999999999999999999999999999999999999999999754 567666654 44444 56999
Q ss_pred EEEecCCeEEEecCHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVL 413 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (991)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.8e-37 Score=375.01 Aligned_cols=249 Identities=23% Similarity=0.345 Sum_probs=189.8
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++. .+ .....+.....++++|+++.+..
T Consensus 309 ~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~~---------------------------- 353 (582)
T 3b5x_A 309 QRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQG---------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcCC----------------------------
Confidence 45666777877777654431 00 00111112346999999987621
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 354 ----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 354 ----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred ----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 1134899999999999999999999999999999999999998 9999999999865432 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CC
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GL 308 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL 308 (991)
.+++ .||+||+.++.. .....+. ++++++.+ .+
T Consensus 427 ~l~~-~tv~eni~~~~~---~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~ 466 (582)
T 3b5x_A 427 HLFN-DTIANNIAYAAE---GEYTREQ------------------------------------IEQAARQAHAMEFIENM 466 (582)
T ss_pred cccc-ccHHHHHhccCC---CCCCHHH------------------------------------HHHHHHHCCCHHHHHhC
Confidence 7775 599999998641 0100000 11122222 34
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..||.+|+ ....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|+ ...
T Consensus 467 p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~-~~~- 541 (582)
T 3b5x_A 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHR-LST- 541 (582)
T ss_pred cccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecC-HHH-
Confidence 5567888885 467899999999999999999999999999999999999999999999974 36777776554 434
Q ss_pred HhhcCeEEEecCCeEEEecCHHHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~~~ 414 (991)
.+.||+|++|++|++++.|+++++.+
T Consensus 542 ~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 542 IEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 45799999999999999999998863
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-37 Score=375.97 Aligned_cols=202 Identities=23% Similarity=0.373 Sum_probs=165.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
+.+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 35999999999999999999999999999999999999998 9999999999876543 357999999987776 5
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-------CCcccccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-------GLDVCADT 314 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (991)
||+||+.++.. .....+. ++++++.+ .+++..||
T Consensus 432 tv~eni~~~~~---~~~~~~~------------------------------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART---EEYSREQ------------------------------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT---SCCCHHH------------------------------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC---CCCCHHH------------------------------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998641 0110000 11122222 24557789
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.+|+ ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|+ ...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~-~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHR-LSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEEECSC-GGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecc-HHHH-HhCCE
Confidence 9985 467899999999999999999999999999999999999999999999975 36677666554 4444 57999
Q ss_pred EEEecCCeEEEecCHHHHHH
Q 001957 395 IILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (991)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-38 Score=329.66 Aligned_cols=188 Identities=19% Similarity=0.276 Sum_probs=156.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++. ..++.++||+|+..+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 5999999999999999999999999999999999999998 999999999876 34577999999998899999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+.|+....+. .. . ...++++++.+||++. +. .+..||
T Consensus 98 nl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~~-----~~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-KK-----KLGELS 135 (214)
T ss_dssp HHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-TS-----BGGGSC
T ss_pred HHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-CC-----ChhhCC
Confidence 99997643221 00 0 1134567899999765 53 456899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .+.|+|++ +|...++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiiv-tHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS-SREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEE-ESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999999865 35666665 55667888888888755 3443
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=331.42 Aligned_cols=196 Identities=24% Similarity=0.332 Sum_probs=152.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 35999999999999999999999999999999999999998 99999998 3899999875 5789999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC-cccccccccCcccCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 323 (991)
||+.|+.... . +...++ .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~---~~~~~~---~~---------------------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--E---PYYRSV---IQ---------------------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--T---THHHHH---HH---------------------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--H---HHHHHH---HH---------------------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 000000 00 0001223333 223344443 55778
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLR---QNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~---~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+ ++. .+.|+|+++ |....+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivt-H~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVT-HSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEEC-SCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEe-cChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 332 356666665 455555 57999999999
Q ss_pred CeEEEecCHHHHHH
Q 001957 401 GQIVYQGPRELVLE 414 (991)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (991)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-37 Score=375.23 Aligned_cols=255 Identities=23% Similarity=0.341 Sum_probs=191.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
++....++|+.++++.+++. +..+....+....+++++|+++.+.
T Consensus 321 ~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~y~----------------------------- 365 (598)
T 3qf4_B 321 QMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFSYD----------------------------- 365 (598)
T ss_dssp HHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECCSS-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEECC-----------------------------
Confidence 45666778888777655431 0001111122345799999987641
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
+...+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 366 ----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 366 ----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp ----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred ----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 1235999999999999999999999999999999999999998 9999999999876543 46799999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
.++ ..||+||+.++... ...+ ++.+ +....+ .+.. .-.+++..||.
T Consensus 439 ~lf-~~tv~eni~~~~~~----~~~~---~~~~------------------~~~~~~------~~~~--~~~~~~g~~t~ 484 (598)
T 3qf4_B 439 ILF-STTVKENLKYGNPG----ATDE---EIKE------------------AAKLTH------SDHF--IKHLPEGYETV 484 (598)
T ss_dssp CCC-SSBHHHHHHSSSTT----CCTT---HHHH------------------HTTTTT------CHHH--HHTSTTGGGCB
T ss_pred ccc-cccHHHHHhcCCCC----CCHH---HHHH------------------HHHHhC------CHHH--HHhccccccch
Confidence 766 56999999986321 1101 0100 000000 0111 22466778899
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+ ....|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++. .++|+|++.| ....+ ..||+|
T Consensus 485 ~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH-~l~~~-~~~d~i 559 (598)
T 3qf4_B 485 LTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAH-RLNTI-KNADLI 559 (598)
T ss_dssp CHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESC-CTTHH-HHCSEE
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEec-CHHHH-HcCCEE
Confidence 984 456799999999999999999999999999999999999999999999974 3667776655 44444 559999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
++|++|+++++|+++++.+
T Consensus 560 ~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 560 IVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEECSSSEEECSCHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999864
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.1e-37 Score=327.78 Aligned_cols=196 Identities=22% Similarity=0.314 Sum_probs=151.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45999999999999999999999999999999999999998 99999998 38999999887774 999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
||+.|+.... . . ......+..+ .+..++. ++...++.++ +.+..|
T Consensus 87 enl~~~~~~~----~-~---~~~~~~~~~~------------------------l~~~~~~--~~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-Y---RYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-H---HHHHHHHHTT------------------------CHHHHTT--STTGGGSCBC-TTCTTS
T ss_pred HHhhccCCcC----h-H---HHHHHHHHhC------------------------cHHHHHh--Cccccccccc-CCCCcC
Confidence 9999863210 0 0 0000000000 0111222 2333455554 346789
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||||||||+||++|+.+|++|+|||||+|||+.++..+++.+ +++. .+.|+|+++ |....+ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vt-H~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVT-SKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEEC-CCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEc-CChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999974 5543 356666655 455555 46999999999999
Q ss_pred EEecCHHHHH
Q 001957 404 VYQGPRELVL 413 (991)
Q Consensus 404 v~~G~~~~~~ 413 (991)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-37 Score=405.51 Aligned_cols=260 Identities=19% Similarity=0.274 Sum_probs=195.0
Q ss_pred HhHHHHHHHHHhhcccChHHHHHHHHHhhhhcCCCCCceEEEEeeeEEEEEEecCCCCCCchHHHHHHHHHHHHhhhhhc
Q 001957 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (991)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (991)
+.....++|+.++++..++ ..+........+...+|+|+||++.|..
T Consensus 1042 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~~---------------------------- 1088 (1321)
T 4f4c_A 1042 AKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYPE---------------------------- 1088 (1321)
T ss_dssp HHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCTT----------------------------
T ss_pred HHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCCC----------------------------
Confidence 3455567777766655443 1110001111223457999999998621
Q ss_pred CCccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC
Q 001957 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (991)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (991)
+....||+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|++||+++++... ++.++||+|++
T Consensus 1089 ---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1089 ---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp ---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred ---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence 12345999999999999999999999999999999999999998 9999999999988764 47899999976
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
. +++.||||||.|+..-. ....+.+. +..+.+++ + -.+..|++.+||.
T Consensus 1163 ~-LF~gTIreNI~~gld~~--~~sd~ei~---~Al~~a~l------------------------~--~~I~~Lp~GldT~ 1210 (1321)
T 4f4c_A 1163 T-LFDCSIAENIIYGLDPS--SVTMAQVE---EAARLANI------------------------H--NFIAELPEGFETR 1210 (1321)
T ss_dssp C-CCSEEHHHHHSSSSCTT--TSCHHHHH---HHHHHTTC------------------------H--HHHHTSTTTTCSE
T ss_pred E-eeCccHHHHHhccCCCC--CCCHHHHH---HHHHHhCC------------------------h--HHHHcCcCCCCCE
Confidence 5 45679999998874211 01111111 11111110 0 1134688999999
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
||+. ...||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+|+.. | +..+...||+|
T Consensus 1211 vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IA-H-RLsTi~~aD~I 1285 (1321)
T 4f4c_A 1211 VGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIA-H-RLNTVMNADCI 1285 (1321)
T ss_dssp ETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEEC-S-SSSTTTTCSEE
T ss_pred ecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEec-c-CHHHHHhCCEE
Confidence 9965 45699999999999999999999999999999999999999999999864 356666654 4 44678889999
Q ss_pred EEecCCeEEEecCHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLE 414 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (991)
+||++|+|+++|+|+++++
T Consensus 1286 ~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1286 AVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEESSSSEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999985
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.8e-35 Score=320.03 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=147.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|+..+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5999999999999999999999999999999999999998 99999998 3899999987777 59999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
|+. +... . . . ......+..+ .+..++. +....++.++ +.+..||
T Consensus 118 nl~-~~~~---~-~-~---~~~~~~~~~~------------------------l~~~l~~--~~~~~~~~~~-~~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY---D-E-Y---RYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGITLS 161 (290)
T ss_dssp HHH-TTCC---C-H-H---HHHHHHHHTT------------------------CHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc---c-h-H---HHHHHHHHhC------------------------hHHHHHh--ccccccchhc-CccCcCC
Confidence 998 4211 0 0 0 0000000000 0112222 2233455554 3467899
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEE
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L-~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv 404 (991)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.+ +++. .+.|+|++. |....+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivt-Hd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVT-SKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEEC-CCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEe-cCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999974 4442 356666654 555555 569999999999999
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-34 Score=374.37 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEM 241 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (991)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+ +..
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL-FDC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCC-CSS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcc-ccc
Confidence 35999999999999999999999999999999999999998 9999999999976543 4679999998754 568
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
||+||+.++...... ..+. +.+..+..+ .+. .+-.+++.+||.||+ ..
T Consensus 1122 ti~eNi~~~~~~~~~--~~~~---i~~~~~~~~------------------------~~~--~i~~l~~gldt~vge-~G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV--SYEE---IVRAAKEAN------------------------IHQ--FIDSLPDKYNTRVGD-KG 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC--CHHH---HHHHHHHHT------------------------CHH--HHSSTTTGGGCBCST-TS
T ss_pred cHHHHHhccCCCCCC--CHHH---HHHHHHHhC------------------------cHH--HHHhCccccccccCC-CC
Confidence 999999986422111 1111 111110000 011 133578889999995 45
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
..|||||||||+|||+|+.+|++|+|||||+|||+.+...|.+.|++.. .++|+|+. .|..+.+ ..||+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~i-sH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVI-AHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEE-CSCTTGG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEE-ecCHHHH-HcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999998853 45666554 5666666 559999999999
Q ss_pred eEEEecCHHHHHH
Q 001957 402 QIVYQGPRELVLE 414 (991)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (991)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=2.3e-31 Score=320.75 Aligned_cols=191 Identities=28% Similarity=0.315 Sum_probs=159.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 999876 2458999999877788999998
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+..... .. ....++.+|+.+||.+..|.. +..|||
T Consensus 438 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRN-----VEDLSG 474 (607)
T ss_dssp HHHHHHHH-----------HH---------------------------CHHHHHHTHHHHTCTTTTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCCchHhcCC-----hhhCCH
Confidence 86531100 00 011345678999998777654 458999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..+.|+|+ ++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~-vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV-VEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEE-ECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999987544555555 56788899999999999986 8899
Q ss_pred EecCHHHHHH
Q 001957 405 YQGPRELVLE 414 (991)
Q Consensus 405 ~~G~~~~~~~ 414 (991)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.3e-31 Score=317.53 Aligned_cols=191 Identities=27% Similarity=0.311 Sum_probs=158.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 477777888999999999999999999999999999998 999875 2358999998777788999988
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+....... .. ....++.+++.+||.+..+.. +..|||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDRE-----VNELSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSB-----GGGCCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCC-----hhhCCH
Confidence 76531100 00 011245578889998766654 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|+|||||+|||..++..+++.|+++++..++|+|+ ++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV-VEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987544556555 56788899999999999986 8999
Q ss_pred EecCHHHHHH
Q 001957 405 YQGPRELVLE 414 (991)
Q Consensus 405 ~~G~~~~~~~ 414 (991)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.7e-31 Score=312.23 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=156.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
.|+++|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999998 99999765 357999998766778999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+.+..... ... ....++++++.+||.+..|.. +..|||
T Consensus 351 l~~~~~~~-~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-LST------------------------------------SSWFFEEVTKRLNLHRLLESN-----VNDLSG 388 (538)
T ss_dssp HHHHCSST-TCT------------------------------------TSHHHHHTTTTTTGGGCTTSB-----GGGCCH
T ss_pred HHHhhhhc-cch------------------------------------hHHHHHHHHHHcCCHHHhcCC-----hhhCCH
Confidence 98742100 000 011245577888998776654 468999
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC--CeEE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQIV 404 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~--G~iv 404 (991)
||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++..+.|+ +.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tv-i~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT-FIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEE-EEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 999999999999999999999999999999999999999999876445554 4567889999999999999986 6677
Q ss_pred EecCHHHHH
Q 001957 405 YQGPRELVL 413 (991)
Q Consensus 405 ~~G~~~~~~ 413 (991)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=313.04 Aligned_cols=193 Identities=25% Similarity=0.248 Sum_probs=158.9
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCC
Q 001957 165 LTILKDVSGVIKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (991)
Q Consensus 165 ~~iL~~vs~~i~~G-----e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (991)
..+|+|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+....+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999998 7852 1 1346899999877777
Q ss_pred CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCc
Q 001957 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (991)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (991)
..||+|++.... .+... ....++.+++.++|.+.+|..
T Consensus 427 ~~tv~e~~~~~~--~~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~---- 464 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQFL------------------------------------NPQFQTDVVKPLRIDDIIDQE---- 464 (608)
T ss_dssp CSBHHHHHHHHC--SSTTT------------------------------------SHHHHHHTHHHHTSTTTSSSB----
T ss_pred CccHHHHHHHHh--hcccc------------------------------------cHHHHHHHHHHcCChhhhcCC----
Confidence 889999875322 11000 001235578899998877654
Q ss_pred ccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+ ++|+.+++..++|+|++|+
T Consensus 465 -~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii-vtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 465 -VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI-VEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp -SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEECE
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEEe
Confidence 56899999999999999999999999999999999999999999999987545656555 5778899999999999998
Q ss_pred C--CeEEEecCHHHHHH
Q 001957 400 D--GQIVYQGPRELVLE 414 (991)
Q Consensus 400 ~--G~iv~~G~~~~~~~ 414 (991)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988875
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.7e-29 Score=310.18 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=135.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCCC----eeeEEEECCee
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHD 218 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL---------------------~~LaG~~~~~~~----~~G~I~~nG~~ 218 (991)
..++|+|||++|++||+++|+||||||||||| ++++|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 888888777521 25677788776
Q ss_pred CCCccccceEEEEecCCC-------------------CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCC
Q 001957 219 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (991)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (991)
.... +++.++||+|... .++.+||+||+.+......... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~~------- 173 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIAR------- 173 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh--------hhHHHH-------
Confidence 5432 2334455554322 2467899999988532210000 000000
Q ss_pred ChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCH
Q 001957 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (991)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~ 356 (991)
.. ..+.... ..+++.+||.+. .|. .+..|||||||||+||+||+.+|+ +|||||||+|||+
T Consensus 174 -------~~---~~~~~~~-~~~l~~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 174 -------LI---LREIRDR-LGFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -------HH---HHHHHHH-HHHHHHcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00 0000111 135888999764 454 446899999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 357 ~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
.++..+++.|+++.+ .+.|+|+ ++|+... ...||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEE-EeCCHHH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999865 4656555 5566655 4569999999 899999999999875
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.4e-28 Score=305.79 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=147.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCC-CCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (991)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 359999999999999999999999999999999995 222 3433221 12368999873 67889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 322 (991)
.|++.+ ...+. ...++.+|+.+||+ +..+..+ .
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~-----~ 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPI-----S 547 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBG-----G
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCc-----c
Confidence 999976 11110 01245678999995 5555444 5
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .++|+|+ ++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEE-EECCHHHHHHhCCEEEEEECCe
Confidence 7999999999999999999999999999999999999999999987 3555555 5678889999999999999999
Q ss_pred EE-EecCHHHHH
Q 001957 403 IV-YQGPRELVL 413 (991)
Q Consensus 403 iv-~~G~~~~~~ 413 (991)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789987764
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.9e-29 Score=301.03 Aligned_cols=182 Identities=22% Similarity=0.278 Sum_probs=144.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCeeCCCc-----cccceEEEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 231 (991)
.+|+||| .|++||+++|+|||||||||||++|+|.++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 4899999 99999999999999999999999999999998 7875 4566554321 112357889
Q ss_pred ecCCCCCCC---CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 SQHDNHIGE---MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 ~Q~d~~~~~---lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+...++. .||.|++..... ...++++|+.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred hhhhhhcchhhhccHHHHHhhhhH-------------------------------------------HHHHHHHHHHcCC
Confidence 886443332 388887743100 0124568899999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..|.. +..|||||||||+||++|+.+|++|||||||++||+.++..+++.|+++.+ .+.|+|+ ++|+..++
T Consensus 149 ~~~~~~~-----~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~-vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLERE-----IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLV-VEHDLAVL 221 (538)
T ss_dssp TTTTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred ChhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHH
Confidence 8776654 468999999999999999999999999999999999999999999999875 4555554 56788899
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..+||+|++|.+|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 9999999999743
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.9e-29 Score=304.08 Aligned_cols=182 Identities=22% Similarity=0.287 Sum_probs=144.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCeeCCCc-----cccceEEEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I---------~~nG~~~~~~-----~~~~~~~yv 231 (991)
.+|+||| .+++||+++|+|||||||||||++|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999998 8885 4567654321 112357888
Q ss_pred ecCCCCCC---CCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 ~Q~d~~~~---~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+....+ ..||+|++..... ...++++|+.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred echhhhchhhccccHHHHhhhhHH-------------------------------------------HHHHHHHHHHcCC
Confidence 88643322 2489998853100 0124567899999
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
++..|..+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+ ++|+...+
T Consensus 219 ~~~~~~~~-----~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDREL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CchhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEE-EecChHHH
Confidence 88777554 58999999999999999999999999999999999999999999999875 4555555 56778888
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..++|+|++|.++
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 9999999999753
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=8.8e-29 Score=307.64 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=152.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCC----CCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH----IGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~----~~~ 240 (991)
+.+|+|||+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|+..+ ...
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~ 754 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------CRIAYIKQHAFAHIESHLD 754 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT--------CCEEEECHHHHHHGGGCTT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc--------cceEeeccchhhhhhcccc
Confidence 46999999999999999999999999999999999999998 999999862 248999997532 235
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHH---HHHHH--H-----------------------------------HcCCC----
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTE---LARRE--K-----------------------------------AAGIK---- 276 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~---~~~~~--~-----------------------------------~~~~~---- 276 (991)
.|++|++.+.... +. ........ +...+ . ..++.
T Consensus 755 ~t~~e~i~~~~q~-g~-d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~ 832 (986)
T 2iw3_A 755 KTPSEYIQWRFQT-GE-DRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSE 832 (986)
T ss_dssp SCHHHHHHHHTTT-SS-CTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTC
T ss_pred cCHHHHHHHHhhc-cc-hhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccc
Confidence 7999999874321 00 00000000 00000 0 00000
Q ss_pred -------------CCCCh-HHHHHH---H-----Hhh---hhhhhHHHHHHHHHcCCccc--ccccccCcccCCCChhHh
Q 001957 277 -------------PDPDI-DVYMKA---I-----ATE---GQEANVITDYYLKVLGLDVC--ADTMVGDEMIRGISGGQK 329 (991)
Q Consensus 277 -------------~~~~~-~~~~~~---~-----~~~---~~~~~~~~~~~l~~lgL~~~--~dt~vg~~~~~~LSGGqr 329 (991)
+.... ..+.+. . ... .......++++|+.+||... .+. .+++||||||
T Consensus 833 ~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQk 907 (986)
T 2iw3_A 833 RWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQK 907 (986)
T ss_dssp EEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHH
T ss_pred cccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHH
Confidence 00000 000000 0 000 01123456789999999742 343 3468999999
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEecC
Q 001957 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (991)
Q Consensus 330 qRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G~ 408 (991)
|||+||++|+.+|++|||||||+|||..+...+++.|+++ ++|+ +.++|+.+++.++||+|++|.+|+++..|+
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tV-IiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGV-IIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEE-EEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEE-EEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999998763 4554 445677888999999999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=3.9e-28 Score=298.10 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=88.0
Q ss_pred HHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
.+.+..+||... .+ +.+..|||||||||+|||||+.+| ++|||||||+|||+.++..+++.|+++.+ .+.
T Consensus 524 ~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~ 597 (670)
T 3ux8_A 524 LETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 597 (670)
T ss_dssp HHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 345778888642 33 455689999999999999999876 59999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++ +|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 598 tvi~v-tHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVI-EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEE-CCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEE-eCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 66555 5566554 679999999 899999999999884
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.1e-27 Score=284.94 Aligned_cols=174 Identities=21% Similarity=0.196 Sum_probs=132.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCeeCCCcc-----ccceEEEEecCCCC-
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-----------TYNGHDMDEFV-----PQRTAAYISQHDNH- 237 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I-----------~~nG~~~~~~~-----~~~~~~yv~Q~d~~- 237 (991)
.++||+++|+||||||||||||+|+|+++|+ +|+| .++|.++.... ....+..+.|....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4599999999999999999999999999998 8988 67776653210 11223444443222
Q ss_pred --CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccc
Q 001957 238 --IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (991)
Q Consensus 238 --~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (991)
+...||+|++.... ....++++++.+||.+..|..
T Consensus 99 ~~~~~~~v~~~l~~~~-------------------------------------------~~~~~~~~l~~l~l~~~~~~~ 135 (538)
T 3ozx_A 99 SKFLKGTVNEILTKID-------------------------------------------ERGKKDEVKELLNMTNLWNKD 135 (538)
T ss_dssp GTTCCSBHHHHHHHHC-------------------------------------------CSSCHHHHHHHTTCGGGTTSB
T ss_pred hhhccCcHHHHhhcch-------------------------------------------hHHHHHHHHHHcCCchhhcCC
Confidence 22347776543210 001245678999998877755
Q ss_pred ccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.| |+.++|...++..+||+|
T Consensus 136 ~-----~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~t-ii~vsHdl~~~~~~~d~i 207 (538)
T 3ozx_A 136 A-----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKY-VIVVDHDLIVLDYLTDLI 207 (538)
T ss_dssp G-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSE-EEEECSCHHHHHHHCSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCE-EEEEEeChHHHHhhCCEE
Confidence 4 57999999999999999999999999999999999999999999999853 555 555677888999999999
Q ss_pred EEecCCe
Q 001957 396 ILLSDGQ 402 (991)
Q Consensus 396 ilL~~G~ 402 (991)
++|++|.
T Consensus 208 ~vl~~~~ 214 (538)
T 3ozx_A 208 HIIYGES 214 (538)
T ss_dssp EEEEEET
T ss_pred EEecCCc
Confidence 9997653
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.3e-27 Score=283.03 Aligned_cols=185 Identities=23% Similarity=0.302 Sum_probs=133.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCeeCCCccc---cc--eEE
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT-----------YNGHDMDEFVP---QR--TAA 229 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~-----------~nG~~~~~~~~---~~--~~~ 229 (991)
..|++++ .+++||+++|+|||||||||||++|+|+++|+ +|+|. +.|.++..... .+ ...
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 68999999999999999999999999999998 88872 23322211000 00 112
Q ss_pred EEecCCCCC------CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHH
Q 001957 230 YISQHDNHI------GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303 (991)
Q Consensus 230 yv~Q~d~~~------~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (991)
+.+|....+ +..++.+.+... .......+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~-----------------------------------------~~~~~~~~~~~l 206 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR-----------------------------------------MEKSPEDVKRYI 206 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH-----------------------------------------CCSCHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh-----------------------------------------hhhHHHHHHHHH
Confidence 223321110 111233322210 001113466789
Q ss_pred HHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 304 ~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
+.+||.+..|..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.| |+.++|
T Consensus 207 ~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~t-vi~vtH 279 (608)
T 3j16_B 207 KILQLENVLKRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKY-VICVEH 279 (608)
T ss_dssp HHHTCTGGGGSCT-----TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCE-EEEECS
T ss_pred HHcCCcchhCCCh-----HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCE-EEEEeC
Confidence 9999988777554 58999999999999999999999999999999999999999999999865 4555 555678
Q ss_pred CCchhHhhcCeEEEecCCe
Q 001957 384 PAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 384 ~~~~~~~lfD~vilL~~G~ 402 (991)
...++..++|+|++|.+|.
T Consensus 280 dl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 280 DLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CHHHHHHHCSEEEEEESCT
T ss_pred CHHHHHHhCCEEEEEeCCc
Confidence 8999999999999998664
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=2.1e-25 Score=277.40 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=89.8
Q ss_pred HHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 299 TDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 299 ~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
+..+|+.+||.... + ++.+.+|||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 785 ~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~ 859 (916)
T 3pih_A 785 TLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGN 859 (916)
T ss_dssp HHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC
Confidence 45678899996421 2 2456789999999999999999865 79999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|+ +.|..+.+ ..||+|++| ++|+|++.|+++++.
T Consensus 860 TVIv-I~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIV-IEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEE-ECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEE-EeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6555 45666555 569999999 899999999999986
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=1.1e-25 Score=277.58 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=89.6
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..+|+.+||.. ..+. .+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .+.
T Consensus 826 ~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999976 4443 45689999999999999999764 99999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
|+|++ +|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 900 TVIvi-sHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVI-EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEE-CCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEE-cCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 65554 5666665 689999999 789999999999875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=1.7e-25 Score=276.05 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Q 001957 298 ITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (991)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~---p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~ 373 (991)
.+..+|+.+||... .+ +.+..|||||||||.||++|+.+ |++|||||||+|||..+...+++.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999763 33 34568999999999999999996 799999999999999999999999999875 4
Q ss_pred CceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 374 SGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 374 ~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
+.|+|+ ++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIv-isHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIA-VEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEE-ECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEE-EcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 555555 56677777 889999999 799999999999874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=3.4e-25 Score=274.25 Aligned_cols=107 Identities=23% Similarity=0.252 Sum_probs=89.9
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCChhHhHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCc
Q 001957 300 DYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (991)
Q Consensus 300 ~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p---~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~ 375 (991)
..+|+.+||.. ..+ +.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .+.
T Consensus 844 ~~~L~~lgL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 917 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLG-----QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGN 917 (993)
T ss_dssp HHHHHHTTGGGSBTT-----CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCccccc-----CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45788999975 344 345689999999999999999864 99999999999999999999999999875 466
Q ss_pred eEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 376 TAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 376 t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
|+|++ +|+..++ ..||+|++| ++|++++.|+++++..
T Consensus 918 TVIvi-sHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVI-EHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEE-CCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEE-cCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 65554 5666665 789999999 7899999999998753
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9e-28 Score=280.43 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=145.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-E-EEECCeeCCCccccceEEEEecCCC---CCCCCCH
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-T-VTYNGHDMDEFVPQRTAAYISQHDN---HIGEMTV 243 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~-I~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (991)
.++|+.+++|++++|+||||||||||+|+|+|++.++ +| + |.+||. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 99 9 999982 3567899999873 4566899
Q ss_pred HHHHHHHHHh-cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+||+ |+... .+.... ..+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~~-------------------------------------~~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLL-------------------------------------HNKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCSS-------------------------------------CCBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcchH-------------------------------------HHHHHHHHHhCCCcccc-------hh
Confidence 9999 76432 110000 00122456778876554 35
Q ss_pred CCChhHhHHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc-----hhHh
Q 001957 323 GISGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP-----ETYD 390 (991)
Q Consensus 323 ~LSGGqrqRvsia~~--L~~~p~v----LllDE-PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~-----~~~~ 390 (991)
+|||||||||+||++ |+.+|++ ||||| ||+|||.. ...+.+.+++ .+.|+|+++|++.+ ++..
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 799999999999999 9999999 99999 99999998 5555555544 36677777776552 5668
Q ss_pred hcCe-----EEEec-CCeEEEecCHHHHH
Q 001957 391 LFDD-----IILLS-DGQIVYQGPRELVL 413 (991)
Q Consensus 391 lfD~-----vilL~-~G~iv~~G~~~~~~ 413 (991)
++|+ |++|. +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987663
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=1e-24 Score=252.84 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=148.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----------------------------------CCee
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----------------------------------LKVS 209 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 209 (991)
..+|+++|+.+.+| +++|+|||||||||||++|+++.... ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999997765420 0116
Q ss_pred eEEEECCeeCCCccc----cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-c----hhhhhHHHHHHHHHcCCCCCC-
Q 001957 210 GTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVG-T----RYEMLTELARREKAAGIKPDP- 279 (991)
Q Consensus 210 G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~- 279 (991)
|++.+||.+++.... ...+++++|++.++.. +..+...|--...... . .+.....+.+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999999864222 2347999998765433 5555555432211000 0 000000110000000 00000
Q ss_pred ----------ChHHHHHHHH-----------hhhhhhhHHHHHHHHHcCCcccc----------------cc---cccC-
Q 001957 280 ----------DIDVYMKAIA-----------TEGQEANVITDYYLKVLGLDVCA----------------DT---MVGD- 318 (991)
Q Consensus 280 ----------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 318 (991)
..+.+.+... .........+...++.++++... |. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0011111100 11112233455567777765411 00 1110
Q ss_pred -----cccCC-CChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 319 -----EMIRG-ISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 319 -----~~~~~-LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|++++ .+.++|+++|. . ++..
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~-~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHL-A-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSC-H-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCc-H-HHHh
Confidence 11222 6999999999999999999 9999999999999999999999999986 36677776554 3 6678
Q ss_pred hcCeEEEe----cCCeEEEec
Q 001957 391 LFDDIILL----SDGQIVYQG 407 (991)
Q Consensus 391 lfD~vilL----~~G~iv~~G 407 (991)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999998654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=8e-22 Score=224.61 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=72.6
Q ss_pred cccCCCChhHhHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 319 EMIRGISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+.+.+|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.+ .+.|+|++. |.... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~it-H~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFIT-HDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEE-SCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEe-cchHH-HHhC
Confidence 466789999999999999999 79999999999999999999999999999865 466666655 45544 7889
Q ss_pred CeEEEecCCeEEE
Q 001957 393 DDIILLSDGQIVY 405 (991)
Q Consensus 393 D~vilL~~G~iv~ 405 (991)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=4.9e-24 Score=223.82 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=97.1
Q ss_pred CccccceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCC
Q 001957 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239 (991)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 239 (991)
+..+.+.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|............++.++|++|+.
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH----
Confidence 333456799996 89999999999999999999999999 887 777732111111112346799999965
Q ss_pred CCCHHHHH-HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 240 EMTVRETL-AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 240 ~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+||+ .+..... ..+ ... .+ ...++.+++. |
T Consensus 76 ----~enl~~~~~~~~---------~~~------~~~---~~---------------~~~~~~~l~~-g----------- 106 (208)
T 3b85_A 76 ----NEKIDPYLRPLH---------DAL------RDM---VE---------------PEVIPKLMEA-G----------- 106 (208)
T ss_dssp --------CTTTHHHH---------HHH------TTT---SC---------------TTHHHHHHHT-T-----------
T ss_pred ----HHHHHHHHHHHH---------HHH------HHh---cc---------------HHHHHHHHHh-C-----------
Confidence 5666 4421100 000 000 00 0112333332 2
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+ ||||||+||++|+.+|++|||||||+| ++..+++.|+++ + .+.|+| ++|+..+
T Consensus 107 -----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii--vtHd~~~ 160 (208)
T 3b85_A 107 -----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV--VTGDITQ 160 (208)
T ss_dssp -----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE--EEEC---
T ss_pred -----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE--EECCHHH
Confidence 2 999999999999999999999999999 888999999886 3 455555 4555543
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=3.4e-21 Score=215.93 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred ccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.|+++. .+.++|++.| . .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH-~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITH-N-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECC-C-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEEC-C-HHHHhhCceE
Confidence 45689999999999999997 6899999999999999999999999999974 3556666554 4 4688899987
Q ss_pred --EEecCCeE-EEecCHHH
Q 001957 396 --ILLSDGQI-VYQGPREL 411 (991)
Q Consensus 396 --ilL~~G~i-v~~G~~~~ 411 (991)
++|.+|.. +.....++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.84 E-value=1.2e-23 Score=241.49 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=135.1
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc
Q 001957 165 LTILKDVSGVIKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge--------------------~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~ 224 (991)
+.+|+|||+.+++|+ +++|+||||||||||+|+|+|+++++ +|+|.++|.+.+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t~--- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVTM--- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC----C---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecce---
Confidence 468999999999999 99999999999999999999999998 9999999976531
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 001957 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (991)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (991)
.+|++|++ .++.+|+.|++.++.. . ..++++++
T Consensus 110 ---~~~v~q~~-~~~~ltv~D~~g~~~~----~---------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 110 ---ERHPYKHP-NIPNVVFWDLPGIGST----N---------------------------------------FPPDTYLE 142 (413)
T ss_dssp ---CCEEEECS-SCTTEEEEECCCGGGS----S---------------------------------------CCHHHHHH
T ss_pred ---eEEecccc-ccCCeeehHhhcccch----H---------------------------------------HHHHHHHH
Confidence 27899974 5778999988755320 0 01345678
Q ss_pred HcCCcccccccccCcccCCCChh--HhHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-
Q 001957 305 VLGLDVCADTMVGDEMIRGISGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCLRQNIH- 371 (991)
Q Consensus 305 ~lgL~~~~dt~vg~~~~~~LSGG--qrqRvsia~~L~~----------~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~- 371 (991)
.++|.+.. .. +. |||| ||||+.||++|+. +|++++|||||+|||+.++.++++.|+++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887542 22 23 9999 9999999999999 9999999999999999999999999999852
Q ss_pred ---cc---CceEEEEEecCCch--hHhhcCeEE-EecCC
Q 001957 372 ---IN---SGTAVISLLQPAPE--TYDLFDDII-LLSDG 401 (991)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~lfD~vi-lL~~G 401 (991)
.. ..++|+...|...+ +.+++|+|. .|.+|
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 22 23444444444444 777777774 44433
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=5.2e-22 Score=203.44 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (991)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ ++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22333221 1111102246789999964 222222 10 00
Q ss_pred hhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHH--
Q 001957 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-- 337 (991)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~-- 337 (991)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0112 23456799999999999996
Q ss_pred ---HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe--cCCchhHhhcCeEEEecCCeEEE
Q 001957 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 405 (991)
Q Consensus 338 ---L~~~p~vLllDE--PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~--q~~~~~~~lfD~vilL~~G~iv~ 405 (991)
++.+|++|+||| ||++||+.....+.+.|++ .+.|+|+++| |+.+.+..++|+ .+|++++
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999998888864 3566888886 788889899998 5566665
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=1.1e-23 Score=232.71 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+|||+.|++|++++|+||||||||||+++|+|++ +|+|. +|++|+..++ ..|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf-~~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFW-LASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGG-GGGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCccccc-cccHH
Confidence 35899999999999999999999999999999999997 57773 4567765444 46888
Q ss_pred H-HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 245 E-TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 245 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
| |+.|.... . + .+...++.+ |++..| ...
T Consensus 171 ~~ni~~~~~~-----~-~------------------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-----T-H------------------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-----C-H------------------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-----c-H------------------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 6 77663110 0 0 011223333 444444 357
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|||||||| ||+|+.+|+||| ||+||+.+...|.. + +| ..++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999988887752 1 33 34566789999 9999999
Q ss_pred EEecCHHHHHHHHHh
Q 001957 404 VYQGPRELVLEFFAS 418 (991)
Q Consensus 404 v~~G~~~~~~~~f~~ 418 (991)
++.|+++++..+|.+
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999999666654
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.82 E-value=2.9e-21 Score=196.51 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=54.3
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~----------------t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
..||||||||+||++++.+|++|+|||||+|||+. ...++.+.|+++.+ .|.|+|+++ |..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~vt-H~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVYIL-NSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEEEE-CSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEEEe-CCHH
Confidence 46999999999999999999999999999999999 55888999888765 467777665 5554
Q ss_pred hhH
Q 001957 387 ETY 389 (991)
Q Consensus 387 ~~~ 389 (991)
++.
T Consensus 161 ~~~ 163 (171)
T 4gp7_A 161 EVE 163 (171)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.79 E-value=6.4e-21 Score=211.31 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=129.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c--cceEEEEecCCC-C
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P--QRTAAYISQHDN-H 237 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~--~~~~~yv~Q~d~-~ 237 (991)
++++|+.+++|++++|+||||||||||++.|+|++.++ +|+|.++|.+..... . +..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998875421 1 235899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
++.+||+|++.++... +. + ..+++.+|+.+..+..
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~-- 201 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSL-- 201 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHH--
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHH--
Confidence 8999999999886421 00 0 0123456776655543
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC--------ch
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PE 387 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~ 387 (991)
+.+|| |||++||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+.+|-+. ..
T Consensus 202 ---~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 202 ---MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp ---HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred ---HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 35699 999999999999999 99999 99999987542 3333334677777665221 22
Q ss_pred hHhhcCeEEEecCCeE
Q 001957 388 TYDLFDDIILLSDGQI 403 (991)
Q Consensus 388 ~~~lfD~vilL~~G~i 403 (991)
+....+.|.++..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345567788887764
No 74
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.79 E-value=4.7e-19 Score=200.41 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=74.5
Q ss_pred CcccC-CCChhHhHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 318 DEMIR-GISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 318 ~~~~~-~LSGGqrqRvsia~~L~---------~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.|+++. .++|+++|+ ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 44566 79999999999999999 8999999999999999999999999998752 455556664 33
Q ss_pred hHhhcCeEEEecCCeEEEecCHHHH
Q 001957 388 TYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 388 ~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=8.1e-21 Score=207.30 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCch
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (991)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+.........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47999999999999999999999998 999999999886544457899999999999999999999987643211000
Q ss_pred hhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHh
Q 001957 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339 (991)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~ 339 (991)
+ . +...+. ....+. ....|||||||||++||+++
T Consensus 81 -~---~---------------------------------i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 81 -E---P---------------------------------IEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp -H---H---------------------------------HHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCE
T ss_pred -H---H---------------------------------HHHHHH----HHHHhh-----hHHhcCcccchhhhhheeee
Confidence 0 0 000010 111122 23479999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
. ++|+|||+.|||+.. ++.++.+.+ . .++|+.++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEec
Confidence 5 999999999999976 344444433 3 666666543
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.76 E-value=1.5e-20 Score=218.41 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=139.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe---eCCCc--------cccceEEEEe
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEF--------VPQRTAAYIS 232 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~---~~~~~--------~~~~~~~yv~ 232 (991)
...+|+++ +.|.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35699999 999999999999999999999999999999998 999999998 45332 1347899999
Q ss_pred cC-CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc
Q 001957 233 QH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (991)
Q Consensus 233 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (991)
|+ +..++.+||.+|+.+.++.... +. .+ ....
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~---------------------------v~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH---------------------------VLLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------------EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------------HHHH
Confidence 95 5667889999999887642100 00 00 0000
Q ss_pred ccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhc--c-Cc----eEEEEEecC
Q 001957 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--N-SG----TAVISLLQP 384 (991)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~--~-~~----t~ii~i~q~ 384 (991)
.| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.|+++.+. . |. .+|+.+.|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 11 134699999 999999 888887 9999999999999999987542 2 32 144555566
Q ss_pred CchhHhhcCeEEEecCCeEEEecCHHHH
Q 001957 385 APETYDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 385 ~~~~~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 65 678999999999999999988765
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.76 E-value=8.6e-20 Score=206.10 Aligned_cols=174 Identities=15% Similarity=0.137 Sum_probs=129.3
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---------ccceEEEEecCCC-CC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---------PQRTAAYISQHDN-HI 238 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (991)
+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 5688999999999999999999999999999999887 899999999875421 1245899999987 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
|.+||+|++.++... +. + ..+++.+|+.+..+..
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~--- 258 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSL--- 258 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHH---
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhH---
Confidence 999999999986421 00 0 0123456776655443
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC--------chh
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PET 388 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~~ 388 (991)
+.+|| |||++||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+.+|-+. ..+
T Consensus 259 --~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 259 --MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp --HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred --HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 45699 999999999999999 99999 99999987553 3333334677777665221 123
Q ss_pred HhhcCeEEEecCCeE
Q 001957 389 YDLFDDIILLSDGQI 403 (991)
Q Consensus 389 ~~lfD~vilL~~G~i 403 (991)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345567777777753
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=8.1e-22 Score=206.70 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=112.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+|+| ..|++|++++|+||||||||||+++|+|+++. +.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 347888 68999999999999999999999999999852 23333332322211 1235689999988778888888
Q ss_pred HHHHHHHHhcC----CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH------HHHcCCcccccc
Q 001957 245 ETLAFSARCQG----VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY------LKVLGLDVCADT 314 (991)
Q Consensus 245 E~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt 314 (991)
|++.+.....+ .+... .+..+ .+++. ++.+|+.+.++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~---~~~~~-----------------------------~~~~~~~~~~~l~~~gl~~~~~~ 130 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLA---QPVRA-----------------------------AAATGVPVLIEVDLAGARAIKKT 130 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEH---HHHHH-----------------------------HHHHTCCEEEECCHHHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcH---HHHHH-----------------------------HHHcCCeEEEEeCHHHHHHHHHh
Confidence 87653321111 00000 00000 11111 223344333332
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHh
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGL----D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~ 390 (991)
.++.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+.|+|+ ++|+.+++..
T Consensus 131 -----~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~-vtHdl~~~~~ 193 (207)
T 1znw_A 131 -----MPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVV-VNRRLESACA 193 (207)
T ss_dssp -----CTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEE-ECSSHHHHHH
T ss_pred -----cCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEE-ECCCHHHHHH
Confidence 334566 889999999999999998 7889999999999987544566655 5678999999
Q ss_pred hcCeEEEec
Q 001957 391 LFDDIILLS 399 (991)
Q Consensus 391 lfD~vilL~ 399 (991)
+||+|++|.
T Consensus 194 ~~d~i~~l~ 202 (207)
T 1znw_A 194 ELVSLLVGT 202 (207)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999985
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=2.3e-22 Score=212.89 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=106.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc----cceEEEEecCCCCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (991)
..-|+|||+.+++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ++.++|++|+...++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 776543222 3567899997655544
Q ss_pred CC-HHHHHHH---HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 241 MT-VRETLAF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 241 lT-V~E~l~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
++ +.+++.+ ...+.+.. ...++++++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~~--------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGTL--------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEEE--------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCCCc--------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 32 1111111 11111100 0012223333221 111
Q ss_pred cCcccCCCChhHhHHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 317 GDEMIRGISGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsi-----a~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .+ +.| ...
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~ 184 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLN 184 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSC
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccC
Confidence 1 4699999999999 88999999999999999999999999999999876432 23 122 245
Q ss_pred cCeEEEecC
Q 001957 392 FDDIILLSD 400 (991)
Q Consensus 392 fD~vilL~~ 400 (991)
||.|+++++
T Consensus 185 ~d~iiv~~~ 193 (218)
T 1z6g_A 185 FNLSIINDD 193 (218)
T ss_dssp CSEEEECSS
T ss_pred CCEEEECCC
Confidence 777777653
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=6.9e-19 Score=197.53 Aligned_cols=133 Identities=13% Similarity=0.172 Sum_probs=101.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+ +.... + + .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~~-------~---~-~------- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVFK-------H---H-K------- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCCS-------S---C-S-------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccccc-------c---c-h-------
Confidence 799999999999999999999999999999999999998 9999999864 11100 0 0 0
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+. .+ .+ .+ |
T Consensus 217 -----~~----------------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 217 -----NY----------------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp -----SE----------------------------------------------------EE-------EE-----CB--T
T ss_pred -----hE----------------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 01 8
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
||+||++||++|..+|++|++||||+. ++.+.|+.+.. .+.|+++++|.+. +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766542 3345666666543 8889999999988753
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.71 E-value=4.1e-16 Score=175.87 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=66.5
Q ss_pred cccCCCChhHhH------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 319 EMIRGISGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 319 ~~~~~LSGGqrq------Rvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
..+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.. .+.++|++. |+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~s-H~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVS-HD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEE-SC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEE-Ch-HHHHHhC
Confidence 456789999999 67778888899999999999999999999999999999765 456666655 44 5788999
Q ss_pred CeEEEec
Q 001957 393 DDIILLS 399 (991)
Q Consensus 393 D~vilL~ 399 (991)
|++++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=1.4e-18 Score=192.07 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=114.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-EEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
...+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999998775 57 66554433221111111111122111 11
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+.+++.... +.. .+....++.+++..++. .. +.+.
T Consensus 94 ~~~~l~~~~--------------~~~------------------------~~~~~~~~~~l~~~~l~-i~------~~~~ 128 (296)
T 1cr0_A 94 QSDSLKREI--------------IEN------------------------GKFDQWFDELFGNDTFH-LY------DSFA 128 (296)
T ss_dssp GCHHHHHHH--------------HHH------------------------THHHHHHHHHHSSSCEE-EE------CCCC
T ss_pred hccccccCC--------------CCH------------------------HHHHHHHHHHhccCCEE-EE------CCCC
Confidence 112222110 000 00111223333222221 11 1224
Q ss_pred CCChhH-hHHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHhhccCceEEEEEecC-Cc-------
Q 001957 323 GISGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCLRQNIHINSGTAVISLLQP-AP------- 386 (991)
Q Consensus 323 ~LSGGq-rqRvsia~~L~~~p~vLllDEPTs---G---LD~-~t~~~i~~~L~~l~~~~~~t~ii~i~q~-~~------- 386 (991)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 588898 66666 999999999999999999 5 555 6678899999999876677777765553 23
Q ss_pred -------------hhHhhcCeEEEecCCeE
Q 001957 387 -------------ETYDLFDDIILLSDGQI 403 (991)
Q Consensus 387 -------------~~~~lfD~vilL~~G~i 403 (991)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.71 E-value=1.7e-19 Score=200.69 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=96.0
Q ss_pred ceEEE-EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 170 DVSGV-IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 170 ~vs~~-i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+|.. +++|++++|+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++|++.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 44443 7899999999999999999999999999875 332 458999999888888 9999986
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+... .+.... .+ ...+.+.|+.++ ....+.. +..|||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYAC-----APVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEE-----EEEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCC-----cccCChhh
Confidence 5321 111000 00 012344566666 3333333 35799999
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~ 356 (991)
+||+++|++++.+|+|||||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.71 E-value=2.9e-17 Score=195.69 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=66.7
Q ss_pred ccCCC-ChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 320 MIRGI-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 320 ~~~~L-SGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.+..| ||||||||+||++|+.+| ++|||||||+|||..++..|.+.|+++++ +.++|+++ |.. ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~it-H~~-~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVT-HLA-QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEEC-CCH-HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEe-cCH-HHHHhCCEEE
Confidence 45667 999999999999999999 99999999999999999999999999864 56666655 443 4667899999
Q ss_pred EecCC
Q 001957 397 LLSDG 401 (991)
Q Consensus 397 lL~~G 401 (991)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.68 E-value=2.7e-18 Score=184.64 Aligned_cols=177 Identities=15% Similarity=0.059 Sum_probs=103.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+||||.+++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 356999999999999999999999999999999999976 222233 1356789999975 7788999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.|++.+.......... +. .+.+ .+.+.|+.+ .+..+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~-~~----------------~~~~---------------~~~~~L~~l--~~~~~~-----~~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-DA----------------FDND---------------LMHRTLKNI--VEGKTV-----EVPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG-GG----------------BCHH---------------HHHHHHHHH--HTTCCE-----EECC
T ss_pred hHhhhhhccCCCCCCc-cc----------------ccHH---------------HHHHHHHHH--HCCCCe-----eccc
Confidence 9999875432211100 00 0000 111223322 233333 3458
Q ss_pred CChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh-HhhcCeEEEecCCe
Q 001957 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET-YDLFDDIILLSDGQ 402 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~-~~lfD~vilL~~G~ 402 (991)
+|+||+||+.+ ++++.+|++++||||...+|.. +.++ .+.+++++.|. ...+ ..+++++ .+|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~-~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS-DVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH-HHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH-HHHHHHHHHHHH---HcCC
Confidence 99999999987 5788899999999998888763 2222 24566666543 2333 3344444 5564
Q ss_pred EEEecCHHHHHHH
Q 001957 403 IVYQGPRELVLEF 415 (991)
Q Consensus 403 iv~~G~~~~~~~~ 415 (991)
+.+++.+.
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 45555543
No 86
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.68 E-value=6.3e-17 Score=173.03 Aligned_cols=112 Identities=19% Similarity=0.316 Sum_probs=89.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.|+... ....+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 56889998885221 13578999999999999999999999999999999999865 46899999998864
Q ss_pred ccc------c-cceeeEEeccCCCCCCCCHHHHHHhhhhccCCCCCCHHH
Q 001957 936 QET------F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSET 978 (991)
Q Consensus 936 ~~t------f-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~~v~~~~ 978 (991)
..+ + ++.+|||+|+..+.|.+||+|++.|...++.....+.++
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 120 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence 211 2 345999999999999999999999987766433444443
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=5.8e-17 Score=201.85 Aligned_cols=169 Identities=22% Similarity=0.322 Sum_probs=121.4
Q ss_pred HHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHH
Q 001957 193 TLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (991)
Q Consensus 193 TLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (991)
|...|..+++.+. .|+|+++|+++.+ +..+||.|++.|.....-...........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~------ 437 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGEL------ 437 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHH------
T ss_pred cchhcccccCChH---hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhh------
Confidence 3445666777777 8999999998743 34578999998854321110000000000
Q ss_pred cCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCCc--EeEEeC
Q 001957 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDE 349 (991)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~--vLllDE 349 (991)
.+ +.. .....|..+||... .| +.+.+|||||||||.||++|+.+|+ +|+|||
T Consensus 438 ------------~~-------~~~-~~~~~L~~vgL~~l~l~-----r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDE 492 (916)
T 3pih_A 438 ------------LK-------EIE-KRLEFLVDVGLEYLTLS-----RSATTLSGGESQRIRLATQIGSGLTGVIYVLDE 492 (916)
T ss_dssp ------------HH-------HHH-HHHHHHHTTTCTTCBTT-----SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ------------HH-------HHH-HHHHHHHHcCCcccccc-----CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 00 001 12346778899754 34 4456899999999999999999877 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 350 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 350 PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
||+|||+.....+++.|+++.+ .|.|+|+ ++|+...+ ..+|+|++| ++|++++.|+++++..
T Consensus 493 PT~gLD~~~~~~l~~~L~~L~~-~G~Tviv-VtHd~~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 493 PTIGLHPRDTERLIKTLKKLRD-LGNTVIV-VEHDEEVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TTTTCCGGGHHHHHHHHHHTTT-TTCEEEE-ECCCHHHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999999999999999864 4666655 45666554 569999999 8999999999998864
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.65 E-value=1.4e-16 Score=199.27 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=71.6
Q ss_pred CCCChhHhHHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe
Q 001957 322 RGISGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L--~~~p~vLllDEPTsGLD~~t~~~i-~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL 398 (991)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+..+.++|+++| . .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH-~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH-F-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEES-C-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcC-c-HHHHHHhccccee
Confidence 47899999999999888 999999999999999999999888 56666665434667777655 4 4677899999999
Q ss_pred cCCeEEEecCHHHH
Q 001957 399 SDGQIVYQGPRELV 412 (991)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (991)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998877654
No 89
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.65 E-value=1.6e-16 Score=178.86 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=87.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998872 2468999999999999999999999999999999999876 4589999999875
Q ss_pred ----C-cccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 ----K-QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ----~-~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
. ....+|.+|||+|+..++|++||+|++.|..+.|.
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~ 109 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK 109 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC
Confidence 2 12356889999999999999999999999876653
No 90
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.64 E-value=2.3e-16 Score=178.91 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=87.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ...+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377899998872 2468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
.. ...+|.+|||.|+..++|++||+|++.|..+++.
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 42 2346789999999999999999999999887763
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.64 E-value=2.2e-16 Score=188.35 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=113.5
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (991)
++.+++|++++|+||||||||||++.|+|...+. |+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5699999999999999999999999999987653 32 12445566431 01111110
Q ss_pred HhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHH
Q 001957 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331 (991)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR 331 (991)
+ .+ + +. +. +...|+....+ ..+..|||||+||
T Consensus 330 ~-~g-------------------~----~~------------------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S-WG-------------------M----DF------------------EE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp T-TS-------------------C----CH------------------HH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred H-cC-------------------C----CH------------------HH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 0 00 0 00 11 12345544443 3456899999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHhhccCceEEEEEecCC---------chhHhhcCeEEE
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCLRQNIHINSGTAVISLLQPA---------PETYDLFDDIIL 397 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~-----t~~~i~~~L~~l~~~~~~t~ii~i~q~~---------~~~~~lfD~vil 397 (991)
+.+|+++..+|++|++| ||+|||.. .+..+.+.++.+.+ .+.|+|++.|... ..+..++|+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 89999999988754 5777777766551 567789999999
Q ss_pred ecCCe
Q 001957 398 LSDGQ 402 (991)
Q Consensus 398 L~~G~ 402 (991)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
No 92
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.64 E-value=2.9e-16 Score=176.98 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=89.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.|.... ....+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 24 mi~v~~ls~~y~~~~---------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECSS---------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCCC---------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999998885321 23678999999999999999999999999999999999865 4589999999986
Q ss_pred Ccc------cccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 935 ~~~------tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
... .++|.+|||+|+..++|.+||+|++.|.+.++.
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 521 246789999999999999999999999887653
No 93
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.63 E-value=2.9e-16 Score=170.57 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378999998872 2468999999999999999999999999999999999865 4589999999886
Q ss_pred Cc----------------ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~----------------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ..+++.+|||+|+..++|.+||+|++.|.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 118 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 118 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhH
Confidence 41 135677999999998999999999999964
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.63 E-value=3.6e-17 Score=184.45 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=125.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc----------cccceEEEEec
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------VPQRTAAYISQ 233 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~----------~~~~~~~yv~Q 233 (991)
.+.+|+++ +.|.+|++++|+||||||||||+++|+|..+++ .|.|.++|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999999752111 12356778887
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccc
Q 001957 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (991)
.+. ...+.+.-.... +. ..+ .+...+ .|
T Consensus 134 ~~~-----~~~~r~~~~~~~------------~~------------------------------~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTA------------TT------------------------------IAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHH------------HH------------------------------HHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHH------------HH------------------------------HHH-HHHhcc----cc
Confidence 542 222222211100 00 000 011111 11
Q ss_pred ccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh-ccCce----EEEEEecCCchh
Q 001957 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGT----AVISLLQPAPET 388 (991)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~-~~~~t----~ii~i~q~~~~~ 388 (991)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|.. +|+..+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 111012345799999 899999 577776 999999999999999998753 23431 4455556665
Q ss_pred HhhcCeEEEecCCeEEEecCHHHH
Q 001957 389 YDLFDDIILLSDGQIVYQGPRELV 412 (991)
Q Consensus 389 ~~lfD~vilL~~G~iv~~G~~~~~ 412 (991)
..+||++++|.+|+++.+|+.+++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 678999999999999999988765
No 95
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.63 E-value=3.7e-16 Score=165.85 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=84.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67899998772 1468999999999999999999999999999999999865 45899999999864
Q ss_pred cc------ccc-ceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 QE------TFA-RISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~~------tf~-r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. .++ +.+||++|+..+.|.+||+|++.|.+.++
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 21 133 67899999998999999999999987654
No 96
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.63 E-value=3.7e-16 Score=164.45 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=85.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.+. + .+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 478899998762 2 57999999999999999999999999999999999865 4589999999886
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .+++.+||++|+..+.+.+||+|+|.|.+.++
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 106 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY 106 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence 5 46788999999998899999999999987654
No 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.63 E-value=3.4e-16 Score=169.95 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=83.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
-+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378999998872 2468999999999999999999999999999999999865 4589999999886
Q ss_pred C-----cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 K-----QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~-----~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
. ...+++.+|||+|+...+|.+||+|++.|.+
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 3 1235677999999998999999999999965
No 98
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=3.3e-16 Score=169.45 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=86.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478999998872 2468999999999999999999999999999999999865 4589999999986
Q ss_pred Cc--ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~--~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ..+++.+|||+|+..+.|.+||+|+|.|.+.++
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc
Confidence 42 235678999999998999999999999977654
No 99
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.63 E-value=3.3e-16 Score=176.80 Aligned_cols=99 Identities=28% Similarity=0.341 Sum_probs=85.8
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67889998772 2468999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|..+++
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 234678999999999999999999999987655
No 100
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.62 E-value=4.6e-16 Score=176.77 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=85.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67889998772 2468999999999999999999999999999999999876 46899999998753
Q ss_pred c-------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 2 223678999999999999999999999987765
No 101
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.62 E-value=5.2e-16 Score=175.42 Aligned_cols=99 Identities=27% Similarity=0.401 Sum_probs=85.6
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988762 2357999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 224578999999999999999999999987665
No 102
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.62 E-value=3.2e-16 Score=176.98 Aligned_cols=99 Identities=25% Similarity=0.249 Sum_probs=85.5
Q ss_pred eeecceEEEeeCchhhhhcccccccee--eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~--lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
+.++||++.+. +.. +|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67889998772 123 7999999999999999999999999999999999876 468999999987
Q ss_pred CCc------ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 934 KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 934 ~~~------~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
... ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 532 245788999999999999999999999987655
No 103
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.62 E-value=4.3e-16 Score=175.47 Aligned_cols=101 Identities=27% Similarity=0.349 Sum_probs=87.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++ . +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~--g----------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP--G----------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT--T----------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc--C----------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 478899998762 1 2357999999999999999999999999999999999876 4689999999986
Q ss_pred Cc-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 42 235788999999999999999999999987765
No 104
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.61 E-value=7.7e-16 Score=190.41 Aligned_cols=104 Identities=21% Similarity=0.306 Sum_probs=87.5
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||... .|. .+.+|||||||||.||++|..+| ++|+|||||+|||+.....+++.|+++.. .|.|+|
T Consensus 487 ~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 5889999753 454 45689999999999999999984 99999999999999999999999999854 566655
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~ 413 (991)
++ .|..++ ...+|+|++| .+|++++.|+++++.
T Consensus 561 vV-eHdl~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VV-EHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EE-CCCHHH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EE-ecCHHH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 54 566655 5679999999 799999999998764
No 105
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.61 E-value=6.2e-16 Score=165.87 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=82.3
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+..
T Consensus 7 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 78899998872 2457999999999999999999999999999999999865 45899999999864
Q ss_pred cc---c-ccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 936 ~~---t-f~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. . .++.+|||+|+..+++.+||+|++.|.+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 21 1 2345999999998899999999999975
No 106
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.61 E-value=5.6e-16 Score=175.77 Aligned_cols=99 Identities=21% Similarity=0.320 Sum_probs=79.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|+++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78999998872 2467999999999999999999999999999999999876 45899999999864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 2 234678999999999999999999999986654
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.61 E-value=7.6e-17 Score=170.39 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=91.9
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC---C-CeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~---~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
+-+++|++++|+||||||||||+++|+|...+. + .-.|.|.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 469999999999999999999999999954431 0 01346666654310 01123333333222222 3333332
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1223332
Q ss_pred h-HHHHHHHHHh-------cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhccCceEEEEEecCCch-
Q 001957 329 K-KRVTTGEMMV-------GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPE- 387 (991)
Q Consensus 329 r-qRvsia~~L~-------~~p~vLllDEPTsGLD~~-------t-----~~~i~~~L~~l~~~~~~t~ii~i~q~~~~- 387 (991)
+ +.+..++.++ .+|+++++||||++||+. . ..++++.|+++++..+.|+|++ +|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v-tH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT-NQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE-EECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE-eecccCc
Confidence 2 2234444443 489999999999999983 1 2378888888877556666665 553333
Q ss_pred ---hHhhcCeEEEecCCe
Q 001957 388 ---TYDLFDDIILLSDGQ 402 (991)
Q Consensus 388 ---~~~lfD~vilL~~G~ 402 (991)
+...+|++++|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 788999999998753
No 108
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.61 E-value=5.8e-16 Score=169.10 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=84.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.|+- +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 7 ~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 4789999988731 2348999999999999999999999999999999999865 4589999999986
Q ss_pred C-----cccccceeeEEeccC-CCCCCCCHHHHHHhhhhcc
Q 001957 935 K-----QETFARISGYCEQND-IHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~-----~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~LR 969 (991)
. ...+++.+|||+|+. ......||+|++.|.+..+
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~ 113 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM 113 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc
Confidence 3 124678899999984 3445799999999988754
No 109
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.59 E-value=9.8e-16 Score=166.69 Aligned_cols=100 Identities=24% Similarity=0.299 Sum_probs=86.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..+|++|.+. ...+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899998872 2468999999999999999999999999999999999865 3589999999986
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.. ...++.+||++|+..+.+.+||+|+|.|.+..+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 42 245677999999998888999999999987654
No 110
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.59 E-value=1.4e-15 Score=165.53 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=83.9
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.... ...+.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67889998873100 001468999999999999999999999999999999999865 45899999999865
Q ss_pred cccccceeeEEeccC-CCCCCCCHHHHHHhhhhc
Q 001957 936 QETFARISGYCEQND-IHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~D-ih~p~~TVrEsL~fsA~L 968 (991)
...+++.+||++|+. ...+..||+|++.|.+..
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 334677899999984 567789999999997644
No 111
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.59 E-value=8.1e-16 Score=166.65 Aligned_cols=99 Identities=23% Similarity=0.260 Sum_probs=84.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378999998872 2468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc----ccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 935 ~~----~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
.. ..+++.+|||+|+..++|.+||+|++.|.+..
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 42 12456799999999889999999999997654
No 112
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=7.4e-18 Score=201.11 Aligned_cols=169 Identities=15% Similarity=0.142 Sum_probs=113.1
Q ss_pred cceeeeceEE-EEeCCeEEEEEcCCCCcHHHHHHH--HhcCcCCCCCeeeEEEECCeeCCCc--cccceEEEEecCCCCC
Q 001957 164 HLTILKDVSG-VIKPGRLTLLLGPPSSGKTTLLLA--LAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHI 238 (991)
Q Consensus 164 ~~~iL~~vs~-~i~~Ge~~allGpsGsGKSTLL~~--LaG~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~ 238 (991)
...+|++||+ .+++|++++|+||||||||||+++ ++|.++|+ +|.|.++|.+.... ...+.++|++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4669999999 999999999999999999999999 78999877 89999999873211 1124578888863211
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC
Q 001957 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (991)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (991)
+ ++.+ .. .... .+. .++++.++|.+..+
T Consensus 101 ~------~l~~-~~---~~~~-------------------~~~------------------~~~l~~~~l~~~~~----- 128 (525)
T 1tf7_A 101 G------KLFI-LD---ASPD-------------------PEG------------------QEVVGGFDLSALIE----- 128 (525)
T ss_dssp T------SEEE-EE---CCCC-------------------SSC------------------CSCCSSHHHHHHHH-----
T ss_pred C------cEEE-Ee---cCcc-------------------cch------------------hhhhcccCHHHHHH-----
Confidence 1 1100 00 0000 000 00111222222222
Q ss_pred cccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC-----CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh-----
Q 001957 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEIST-----GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET----- 388 (991)
Q Consensus 319 ~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs-----GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~----- 388 (991)
+.++.||||| |++++|||||+ +||+..+.++.+.++.+.+ .+.|+|++.| ...++
T Consensus 129 ~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH-~~~~~~~~~~ 193 (525)
T 1tf7_A 129 RINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTE-RIEEYGPIAR 193 (525)
T ss_dssp HHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEE-CSSSSSCSST
T ss_pred HHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEec-CCCCcccccc
Confidence 2234577776 56889999998 4699999999999999865 5777777655 45553
Q ss_pred ----HhhcCeEEEecCCe
Q 001957 389 ----YDLFDDIILLSDGQ 402 (991)
Q Consensus 389 ----~~lfD~vilL~~G~ 402 (991)
..+||+|++|++|+
T Consensus 194 ~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 194 YGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TSCHHHHCSEEEEEEEEC
T ss_pred ccceeeeeeEEEEEEEEc
Confidence 45699999999844
No 113
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.59 E-value=4.4e-16 Score=172.31 Aligned_cols=100 Identities=27% Similarity=0.331 Sum_probs=85.2
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.|+||+|.|+- ...+|+|||+.++||+++||+|+||||||||+++|+|--. ..+|+|++||
T Consensus 50 ~~~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G 115 (306)
T 3nh6_A 50 QKGRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDG 115 (306)
T ss_dssp SSCCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECC
Confidence 3457999999998841 2357999999999999999999999999999999999765 4589999999
Q ss_pred ccCCc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 932 ~~~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+... ..+++.+|||+|+..+++ .||+|+|.|..
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~ 152 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGR 152 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTS
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhc
Confidence 98653 346788999999987774 59999999864
No 114
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.58 E-value=2e-15 Score=186.66 Aligned_cols=187 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred CCCCcHHHHHHHHhcC---------cCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 001957 186 PPSSGKTTLLLALAGK---------LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (991)
Q Consensus 186 psGsGKSTLL~~LaG~---------~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (991)
.+..||++|.+.+... +.+. +|+|+++|+++.+. ..++|.|.+.|.......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~---~~~v~~~G~~I~~~----------------~~~~v~e~~~~~~~~~~~ 330 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQE---ALNVTFAGLDITEL----------------SRLPLARVSELLRPYAEE 330 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTT---TTTCBBTTBCHHHH----------------HHSBHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHH---HhhcccCCccHHHH----------------hhcCHHHHHHHHHhhhhh
Confidence 3556899999887763 3344 78889988876542 135677777766543210
Q ss_pred CchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccc-ccccccCcccCCCChhHhHHHHHH
Q 001957 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTG 335 (991)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia 335 (991)
... +.. . +..+ ..+.......+ ..+....++ .|..+||... .| +....|||||||||.||
T Consensus 331 ~~~--~~~-----~-~~~~--~~~~~~i~~~i---~~ei~~rl~-~L~~vGL~~l~l~-----r~~~tLSGGe~QRV~LA 391 (842)
T 2vf7_A 331 REP--GHA-----E-RVKN--RPEQAIALQRM---AADLVKRLD-VLLHLGLGYLGLD-----RSTPTLSPGELQRLRLA 391 (842)
T ss_dssp CSS--CST-----T-SSSS--CSSHHHHHHHH---HHHHHHHHH-HHHHTTCTTSBTT-----CBGGGSCHHHHHHHHHH
T ss_pred hhh--ccc-----c-hhhc--chhhHHHHHHH---HHHHHHHHH-HHHhCCCCcCCcc-----CCcCcCCHHHHHHHHHH
Confidence 000 000 0 0000 00000000000 112223344 5789999754 45 44568999999999999
Q ss_pred HHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEe------cCCeEEEec
Q 001957 336 EMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQG 407 (991)
Q Consensus 336 ~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL------~~G~iv~~G 407 (991)
++|..+| ++|+|||||+|||+.....+.+.|+++.. .+.|+|+ +.|..+ +.+.+|+|++| .+|++++.|
T Consensus 392 ~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIv-VeHdl~-~l~~aD~ii~lgpgaG~~~G~iv~~g 468 (842)
T 2vf7_A 392 TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFV-VEHDLD-VIRRADWLVDVGPEAGEKGGEILYSG 468 (842)
T ss_dssp HHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEE-ECCCHH-HHTTCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEE-EcCCHH-HHHhCCEEEEeCCCcccCCCEEEEec
Confidence 9999998 59999999999999999999999999864 5656555 456665 66789999999 799999999
Q ss_pred CHHHHH
Q 001957 408 PRELVL 413 (991)
Q Consensus 408 ~~~~~~ 413 (991)
+++++.
T Consensus 469 ~~~~~~ 474 (842)
T 2vf7_A 469 PPEGLK 474 (842)
T ss_dssp CGGGGG
T ss_pred CHHHHH
Confidence 998864
No 115
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.58 E-value=3.7e-15 Score=147.56 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=70.3
Q ss_pred CcccCCCChhHhHHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhh
Q 001957 318 DEMIRGISGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia------~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~l 391 (991)
+..+..|||||||||+|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ . ++.++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~-~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD-E-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESC-G-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEECh-H-HHHHh
Confidence 456789999999999876 899999999999999999999999999999999764 46677766555 4 67899
Q ss_pred cCeEEEe--cCCeE
Q 001957 392 FDDIILL--SDGQI 403 (991)
Q Consensus 392 fD~vilL--~~G~i 403 (991)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 116
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.58 E-value=8.1e-16 Score=173.05 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=84.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +. +|+|||+.+++|+++||+|||||||||||++|||-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 46788887762 13 7999999999999999999999999999999999876 46899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...+|.+|||+|+..++|++||+|++.|...++
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 2 234678999999999999999999999987665
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.57 E-value=1.8e-17 Score=171.14 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=105.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (991)
|++++|+||||||||||+++|+|+++ + +| |.++|.+..+.. ..+.++|++|+. .... +++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999988 6 89 999998775432 246789999963 1111 111 0000
Q ss_pred CchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc-ccccccccCcccCCCChhHhHHHHH-
Q 001957 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTT- 334 (991)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsi- 334 (991)
++.+ ...+..+| ++...+|||||+++..
T Consensus 66 -------------------------------------------------~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 -------------------------------------------------LEPPPGKRECRVG-QYVVDLTSFEQLALPVL 95 (189)
T ss_dssp -------------------------------------------------CCCCSSSCCEESS-SSEECHHHHHTTTTTTT
T ss_pred -------------------------------------------------ccCCccccccccc-eEEEcchHHHHHHHHHH
Confidence 0000 00112344 2345699999999844
Q ss_pred HH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHhhccCceEEE---EEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 335 GE---MMVGPALALFMDE--ISTGLDSSTTFQIVNCLRQNIHINSGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 335 a~---~L~~~p~vLllDE--PTsGLD~~t~~~i~~~L~~l~~~~~~t~ii---~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
++ |+..+|++|+||| |+..+|......+.+.| +. ..++|+ +++|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l----~~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL----ST-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH----HC-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH----hC-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 89889887555544444 32 334443 3336553 457788888889999875
Q ss_pred c
Q 001957 407 G 407 (991)
Q Consensus 407 G 407 (991)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.57 E-value=6.1e-16 Score=167.89 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=95.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+|+++| +++|++++|+|||||||||||++|+|+++++ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998762 169999998775321 11111222220
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 012210 112
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
|++||++|..+|+++++|||| |..+...+++ . +. .+.++++++|. . ++...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~-~-~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHT-N-TAIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECC-S-SHHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCc-c-hHHHHHHHHhhhcC
Confidence 899999999999999999999 9888665543 3 23 46666666554 4 37789999998864
No 119
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=3.4e-15 Score=186.32 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=100.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..|++|||+.+++|++++|+|||||||||||++|++..-.. ..| . +.+.. .+.+..-+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998653110 001 0 01111 01111112222222221
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 122468
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHhhccCceEEEEEecCCchhHhhcCeEEE-ecCCe
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQ 402 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~-~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil-L~~G~ 402 (991)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.++|+++| .. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH-~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH-YP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECS-CG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeC-cH-HHHHHHhhcccceEEEE
Confidence 9999999999988 8999999999999999999999987 6677765545667766654 43 56677776431 33444
Q ss_pred EEE
Q 001957 403 IVY 405 (991)
Q Consensus 403 iv~ 405 (991)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 120
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=1.1e-16 Score=177.37 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=80.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK-LDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~-~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (991)
.+.+++++++.| +|+||||||||||++.|.|. ..+. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 88 8888877643222355789999888888899
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
|.||..++..... .+. . ..+++++.+. .+ .+.+
T Consensus 80 v~Dt~g~~~~~~~-------------~e~---~--------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC---F--------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC---------------------------C--------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-------------HHH---H--------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999887542210 000 0 0011111111 11 3346
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
++|||||||+.+|++++ ++++||||+ |||+... +.++++.. .-..+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 79999999999888875 999999998 5999763 55555543 2234444445543
No 121
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.56 E-value=9.2e-15 Score=170.13 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=64.7
Q ss_pred cCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.. .+.++|++.|+ ......||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999998753 35566665544 56788999999
Q ss_pred Eec
Q 001957 397 LLS 399 (991)
Q Consensus 397 lL~ 399 (991)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.56 E-value=2.9e-16 Score=168.11 Aligned_cols=168 Identities=12% Similarity=0.095 Sum_probs=95.9
Q ss_pred eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHh--cCcCCCCCeeeEEEECCeeCCCccc--cceEEEEecCCCCCCCCC
Q 001957 168 LKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALA--GKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 168 L~~v-s~~i~~Ge~~allGpsGsGKSTLL~~La--G~~~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (991)
|+++ .+-|++|++++|+||||||||||+++|+ |...+. .|.+.+++........ .+.++|++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 4443 2479999999999999999999999999 663444 5667776643211100 122344444322222233
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+.++........ .. +. . ....
T Consensus 96 ~~~~~~~~~~~~--------------------------------------------~~---~~-------~-----~~~~ 116 (251)
T 2ehv_A 96 IVDGVSSVVGLP--------------------------------------------SE---EK-------F-----VLED 116 (251)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EEEccccccccc--------------------------------------------cc---cc-------e-----eccC
Confidence 222211110000 00 00 0 0001
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHhhccCceEEEEEecCCchh---------
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLD-----SSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--------- 388 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD-----~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~--------- 388 (991)
..+-++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+ .+.|+|++. |...++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vt-H~~~~~~~~~~~~~i 194 (251)
T 2ehv_A 117 RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTT-EAPDPQHGKLSRYGI 194 (251)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEE-CCC----CCSSSSSC
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEE-CCCCCCcccccccCh
Confidence 123344444444444467999999999999998 6666668888888754 566776665 555565
Q ss_pred Hhhc-CeEEEec
Q 001957 389 YDLF-DDIILLS 399 (991)
Q Consensus 389 ~~lf-D~vilL~ 399 (991)
..+| |+|++|+
T Consensus 195 ~~~~aD~vi~l~ 206 (251)
T 2ehv_A 195 EEFIARGVIVLD 206 (251)
T ss_dssp GGGGCSEEEEEE
T ss_pred hhEeeeEEEEEe
Confidence 6888 9999995
No 123
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.55 E-value=3e-15 Score=163.95 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=82.2
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 18 ~~~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g 82 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFG 82 (279)
T ss_dssp -CEEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECC
Confidence 334589999998872 2468999999999999999999999999999999999875 4589999999
Q ss_pred ccCC-----cccccceeeEEeccCCC--CCCCCHHHHHHhhh
Q 001957 932 YPKK-----QETFARISGYCEQNDIH--SPFVTIYESLLFSA 966 (991)
Q Consensus 932 ~~~~-----~~tf~r~~GY~eQ~Dih--~p~~TVrEsL~fsA 966 (991)
.+.. ...+++.+||++|+... .+.+||+|+|.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 8764 12356789999998653 34679999999864
No 124
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.55 E-value=3.7e-16 Score=197.83 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=109.6
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~-------Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~ 237 (991)
..|++||++.+++ |++++|+|||||||||||++| |++.+- .+..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------------------aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------------------AQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------------------HTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------------------hheeEEeccCcC-
Confidence 4589999999987 999999999999999999999 986531 122348998642
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc
Q 001957 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (991)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (991)
.+||.|++.. + +|+.+..+
T Consensus 828 --~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~---- 846 (1022)
T 2o8b_B 828 --RLTPIDRVFT--R-----------------------------------------------------LGASDRIM---- 846 (1022)
T ss_dssp --EECCCSBEEE--E-----------------------------------------------------CC----------
T ss_pred --CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh----
Confidence 4555554411 0 01110000
Q ss_pred CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~-~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
.....+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+.+..+.++|++ +|..+.+..++|++.
T Consensus 847 -~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~-TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 847 -SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS-THYHSLVEDYSQNVA 923 (1022)
T ss_dssp ----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE-CCCHHHHHHTSSCSS
T ss_pred -hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE-eCCHHHHHHhCCcce
Confidence 01134666665 49999999999999999999999999885 446788888765335565555 566778888899998
Q ss_pred EecCCeEE--EecCHHH
Q 001957 397 LLSDGQIV--YQGPREL 411 (991)
Q Consensus 397 lL~~G~iv--~~G~~~~ 411 (991)
++ +|++. +.|++++
T Consensus 924 v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 924 VR-LGHMACMVENECED 939 (1022)
T ss_dssp EE-EEEEEEC-------
T ss_pred ee-cCeEEEEEecCccc
Confidence 87 58888 5565543
No 125
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.55 E-value=4.4e-15 Score=160.22 Aligned_cols=99 Identities=29% Similarity=0.280 Sum_probs=80.5
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+. +..+|+|||+.+++|+++||+|+|||||||||++|+|-...-..+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67899998872 24579999999999999999999999999999999996211246899999999864
Q ss_pred cc---cc-cceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~---tf-~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.. .. ++.+||++|+..++|.+||+|++.|.+.
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 106 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQ 106 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHH
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHH
Confidence 21 12 3458999999999999999999998653
No 126
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=3.5e-17 Score=171.37 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=106.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCC--CCCCHHHHHHHHHH
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMTVRETLAFSAR 252 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (991)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 478999987765 56899988766421
Q ss_pred hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH----
Q 001957 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ---- 328 (991)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 328 (991)
. ++. . ....+.+.++.+++.+..+. ....+|+||
T Consensus 61 ~--~~~-~----------------------------------~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 H--PDA-F----------------------------------DLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp S--GGG-B----------------------------------CHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred C--hhh-h----------------------------------hHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 1 000 0 00112344566666554433 245689996
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsG-------LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
+||++++++++.+|+++++||||++ ||+.....+.+.+++..+..+.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999987644456676665554
No 127
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.55 E-value=2.6e-15 Score=163.88 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=82.5
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+.-. +++.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 58899999887321 12457999999999999999999999999999999999865 4589999999886
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ..+++.+|||+|+...++ .||+|+|.|.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 42 235677999999987777 59999999864
No 128
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.55 E-value=3.5e-15 Score=160.64 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=82.5
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..++++||++.++ . ++..+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|.+
T Consensus 6 ~~~~~~~l~~~y~--~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK--P---------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS--T---------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC--C---------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3578999998873 1 12468999999999999999999999999999999999865 458999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
... ..+++.+|||+|+...++ .||+|+|.|.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 642 335678999999987776 5999999985
No 129
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.54 E-value=1.9e-16 Score=191.72 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=111.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCC-CCCeeeEEEECCeeCCC------ccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 181 TLLLGPPSSGKTTLLLALAGKLDP-TLKVSGTVTYNGHDMDE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG~~~~-~~~~~G~I~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
++|+|||||||||||++|+|+..| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 6 9999999988521 12346789999999999999999999886532
Q ss_pred cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHH
Q 001957 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (991)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11122
Q ss_pred HHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh----Hhhc--------CeE
Q 001957 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET----YDLF--------DDI 395 (991)
Q Consensus 334 ia~~L~~~p~vLllDEP------TsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~----~~lf--------D~v 395 (991)
++......|+++++||| |+|||+....++.+.++++.+...+.+++.++|..+.+ .+++ ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223457999999999 99999999999999999976655566666667665422 2222 357
Q ss_pred EEecCCeEEEecCHHHHHHH
Q 001957 396 ILLSDGQIVYQGPRELVLEF 415 (991)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~ 415 (991)
+|+.++.++..|+.+++.+.
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCC
T ss_pred EEecchhhcCcccHHHHHHH
Confidence 88999988888876655443
No 130
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.54 E-value=1.3e-14 Score=180.09 Aligned_cols=105 Identities=21% Similarity=0.325 Sum_probs=88.4
Q ss_pred HHHHcCCccc-ccccccCcccCCCChhHhHHHHHHHHHhcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 302 YLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGP--ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 302 ~l~~lgL~~~-~dt~vg~~~~~~LSGGqrqRvsia~~L~~~--p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
.|..+||+.. .| +.+..|||||||||.||++|..+ |++|+|||||+|||+.....+++.|+++.. .|.|+|
T Consensus 504 ~L~~vGL~~l~l~-----r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 577 (993)
T 2ygr_A 504 FLLDVGLEYLSLS-----RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLI 577 (993)
T ss_dssp HHHHHTGGGSCTT-----CBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHhhCCCCccccC-----CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 4788999753 44 44568999999999999999998 589999999999999999999999999864 566655
Q ss_pred EEEecCCchhHhhcCeEEEe------cCCeEEEecCHHHHHH
Q 001957 379 ISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVLE 414 (991)
Q Consensus 379 i~i~q~~~~~~~lfD~vilL------~~G~iv~~G~~~~~~~ 414 (991)
++ .|..+. .+.+|+|++| .+|++++.|+++++.+
T Consensus 578 vV-eHdl~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 578 VV-EHDEDT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EE-CCCHHH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EE-CCCHHH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 54 566654 5689999999 7999999999998764
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.54 E-value=2.7e-16 Score=177.91 Aligned_cols=168 Identities=19% Similarity=0.191 Sum_probs=99.9
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCC-CCeeeE-EEECCeeCCCccccceEEEEecCCCCCCCC
Q 001957 167 ILKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPT-LKVSGT-VTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (991)
Q Consensus 167 iL~~v-s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~--~~~-~~~~G~-I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (991)
.|+++ +|.+++|++++|+||||||||||++.|++.. +|+ +...|+ |++++.+. + ..+.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 45555 5899999999999999999999999999987 443 111367 78887653 1 12345555665433322
Q ss_pred CHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCccc
Q 001957 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (991)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (991)
++.||+.+...
T Consensus 195 ~v~~ni~~~~~--------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 EVLKHIYVARA--------------------------------------------------------------------- 205 (349)
T ss_dssp HHGGGEEEEEC---------------------------------------------------------------------
T ss_pred HHhhCEEEEec---------------------------------------------------------------------
Confidence 44444333210
Q ss_pred CCCChhHhHHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHhhccCceEEEEEe
Q 001957 322 RGISGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCLRQNIHINSGTAVISLL 382 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~-------~~p~vLllDEPTsGLD~~t------------~~~i~~~L~~l~~~~~~t~ii~i~ 382 (991)
--|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+.|+|++ +
T Consensus 206 -~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~-~ 283 (349)
T 1pzn_A 206 -FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT-N 283 (349)
T ss_dssp -CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-E
T ss_pred -CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEE-c
Confidence 01334455555554444 7899999999999999852 4667778888877556666555 5
Q ss_pred cCCchhHhhcCeEEEecCCeEEEecCH
Q 001957 383 QPAPETYDLFDDIILLSDGQIVYQGPR 409 (991)
Q Consensus 383 q~~~~~~~lfD~vilL~~G~iv~~G~~ 409 (991)
|........|++...+..|+++.++..
T Consensus 284 h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC---------------CCCCCTTCS
T ss_pred ccccccccccCCccccCCcceEeecCc
Confidence 555555556666777777877766553
No 132
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.54 E-value=5.3e-16 Score=171.90 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---------cceEEEEecCCCCCCCCCHHHHH
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
+|++++|+||||||||||+++|+|++.++ +|+|.++|.++..... ++.++|++|+....|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999998 8999999998754221 23589999998888999999999
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~-----------------------d~-------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY-----------------------DL-------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC-----------------------SE-------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC-----------------------CE-------------------EEecCCCCCCchH--------HHHHHH
Confidence 875321 00 00 0112223322211 124455
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
++||++|||+++.+|+.++| .||+.+..++++.++++.+..+.|+|+.+|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999999994333 3444444455666666554446777776654
No 133
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.54 E-value=2.6e-15 Score=161.30 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=80.2
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.++ . +..+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~--~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD--D----------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS--S----------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC--C----------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56889998772 1 1357999999999999999999999999999999999865 45899999998864
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...+++.+|||+|+..+++ .||+|+|.|.
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~ 99 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYG 99 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSC
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhh
Confidence 2346778999999987777 5999999985
No 134
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.53 E-value=1.1e-14 Score=158.42 Aligned_cols=99 Identities=27% Similarity=0.294 Sum_probs=81.8
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.+. ++.+|+|||+.+++|+++||+|||||||||||++|+|-...-..+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 489999998872 2468999999999999999999999999999999999732224689999999885
Q ss_pred Cc---ccc-cceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQ---ETF-ARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~---~tf-~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ... ++.+|||+|+....|.+||+|.+.+..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 32 112 234899999999999999999998754
No 135
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.52 E-value=9.4e-15 Score=156.53 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=81.4
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+. + .|+|||+.+++ +++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46788888762 1 29999999999 9999999999999999999999875 45899999998864
Q ss_pred c-ccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. ...++.+|||+|+..+.|.+||+|++.|.+.++
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 2 234677999999998999999999999976543
No 136
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=2.7e-15 Score=184.61 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=95.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. .. .+..+++++| +++.+++
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PA--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SS--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------eh--hccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 44431 11 1234666665 4455555
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55432 25
Q ss_pred CChhHhHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHhhccCceEEEEEecCCchhHhhc
Q 001957 324 ISGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (991)
Q Consensus 324 LSGGqrqRvsia~~L--~~~p~vLllDEP---TsGLD~~t~-~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lf 392 (991)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.++|+++|. . +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~-~-~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHY-F-ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCC-H-HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCC-H-HHHHhh
Confidence 899999999999999 999999999999 999998775 578888865 36677776554 3 334444
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.51 E-value=5.1e-16 Score=163.99 Aligned_cols=78 Identities=14% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CCChhHhHHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHhhccCceEEEEEecCC--------chhHh
Q 001957 323 GISGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPA--------PETYD 390 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~--vLllDEPTsGL--D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~--------~~~~~ 390 (991)
..|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|+|++. |.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~-h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS-QYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE-C-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe-ccCcccccccccchhe
Confidence 458999988888777778999 99999999888 999999999999998875566666654 555 56889
Q ss_pred hcCeEEEecCC
Q 001957 391 LFDDIILLSDG 401 (991)
Q Consensus 391 lfD~vilL~~G 401 (991)
+||+|++|...
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999754
No 138
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.51 E-value=8.4e-15 Score=158.85 Aligned_cols=97 Identities=25% Similarity=0.354 Sum_probs=81.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++-. +...+|+|||+.++||+++||+|||||||||||++|+|-.. . +|+|+++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47899999887321 11357999999999999999999999999999999999875 3 79999999886
Q ss_pred Cc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 935 ~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.. ..+++.+|||+|+..+++ .||+|+|.|.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence 42 335678999999987776 5999999985
No 139
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=5.1e-15 Score=183.22 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=102.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
..+++|+|+. ++|++++|+||||||||||||+|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 0 1 211111 0123455544 45555665
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 5543211 135
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i-~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~i 403 (991)
|+++++ +..+...+.+|+++|||||++|+|+.....+ +..++.+.+..+.++|+++|. . +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~-~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY-F-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC-G-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCC-H-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 677777765346677776554 3 45679998877888887
Q ss_pred EEecC
Q 001957 404 VYQGP 408 (991)
Q Consensus 404 v~~G~ 408 (991)
.+...
T Consensus 748 ~~~~~ 752 (800)
T 1wb9_A 748 DALEH 752 (800)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 76543
No 140
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.49 E-value=1.8e-14 Score=155.23 Aligned_cols=90 Identities=28% Similarity=0.432 Sum_probs=78.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++. .+|+|||+.+++|+++||+|||||||||||++|+|-.. .. |+|.++|.+..
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECC
Confidence 677788764 24999999999999999999999999999999999876 35 99999999853
Q ss_pred ---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 936 ---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 936 ---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
...+++.+||++|+..+++.+||+|+|.|.
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence 234567899999998888999999999986
No 141
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.49 E-value=2.9e-14 Score=151.72 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=75.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||++.++. ++..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4789999988741 12467999999999999999999999999999999999875 4589999999
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.+||++|+....|. ||+|++.|..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~ 93 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGV 93 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTS
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccC
Confidence 37999999888775 9999999853
No 142
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.48 E-value=3e-14 Score=153.90 Aligned_cols=88 Identities=22% Similarity=0.333 Sum_probs=75.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.. +..+|+|||+.+++|+++||+|||||||||||++|+|-.. ..+|+|.
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------- 63 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------- 63 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE-------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE-------
Confidence 678999988730 1357999999999999999999999999999999999865 3578887
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.++.+|||+|+..+.+.+||+|++.|.+.
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 92 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRS 92 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGG
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhh
Confidence 34678999999988899999999999754
No 143
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.47 E-value=4.5e-14 Score=153.24 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=80.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++|+++.+.-.. .++.+|+|||+.++ |+++||+|||||||||||++|+|-. ..+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~~---------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKG---------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEET---------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCC---------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECc
Confidence 56788988773110 12468999999999 9999999999999999999999986 35899999998754
Q ss_pred c-ccccceee-EEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 936 Q-ETFARISG-YCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 936 ~-~tf~r~~G-Y~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
. .. ++.+| ||+|+..+ .+||+|+|.|.+.++
T Consensus 69 ~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 69 KIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp GCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred chHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 2 22 56789 99998766 899999999976554
No 144
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=150.90 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=75.7
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
+.++||++.+.- +...+|+|||+.++||+++||+|||||||||||++|+|-.. ..+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678999988731 12457999999999999999999999999999999999875 5689999999
Q ss_pred cccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 936 ~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
.+|||+|+.. .+..||+|+|.|...
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~ 91 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQ 91 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCccc
Confidence 2799999875 578999999998643
No 145
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.47 E-value=4.9e-14 Score=169.95 Aligned_cols=99 Identities=23% Similarity=0.381 Sum_probs=84.8
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..+.++||+|.++.. +..+|+|||+.++||+++||+||||||||||+++|+|--. ..+|+|++||.
T Consensus 337 ~~~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDN-----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCSS-----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC-----------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 4579999999988531 2457999999999999999999999999999999999865 46899999999
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. ....++.+|||+|+..+++. ||+|++.|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 864 24567889999999887765 999999985
No 146
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=4.1e-14 Score=171.21 Aligned_cols=98 Identities=27% Similarity=0.405 Sum_probs=83.8
Q ss_pred CcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 853 ~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
+..+.++||+|.|+- +..+|+|||+.++||+.+||+||||||||||+++|+|--. ..+|+|++||.
T Consensus 352 ~~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCE
Confidence 357999999998741 2357999999999999999999999999999999999865 46899999999
Q ss_pred cCC---cccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 933 PKK---QETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 933 ~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+.. ....++.+|||+|+..+++ .||+|++.|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~ 452 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYG 452 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSS
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcC
Confidence 854 3456788999999987775 5999999985
No 147
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=161.41 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=82.8
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||++.|+. ....+|+|||+.+++|+++||+|||||||||||++|||-.. .+|+|+++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 46899999988741 12467999999999999999999999999999999999764 58999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
... ..++|.+|||+|+..++| .||+|++.+.
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~ 117 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN 117 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhc
Confidence 653 335789999999999887 6999999754
No 148
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.45 E-value=2.7e-14 Score=172.33 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=85.1
Q ss_pred CCcceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 852 ~~~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+..+.++||+|.|+.. ...+|+|||+.++||+.+||+||||||||||+++|+|--. ..+|+|++||
T Consensus 338 ~~~~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g 404 (587)
T 3qf4_A 338 VEGSVSFENVEFRYFEN-----------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDE 404 (587)
T ss_dssp CCCCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESS
T ss_pred CCCcEEEEEEEEEcCCC-----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECC
Confidence 34579999999988521 2457999999999999999999999999999999999765 4689999999
Q ss_pred ccCCc---ccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 932 ~~~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
.+... ...++.+|||+|+..+++. ||+|+|.|.
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 440 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWG 440 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTT
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhcc
Confidence 98642 4567889999999887754 999999885
No 149
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.45 E-value=6.1e-14 Score=153.53 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=99.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
-+++|++++|+||||||||||++.|++... .|++ +.|.+... ...+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~~---~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGELP---TGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCCC---CCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccCC---CccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998653 3554 33543321 345778876543 1 1111 010
Q ss_pred cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHH
Q 001957 254 QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333 (991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvs 333 (991)
...+ ..+ .....+.+++.+++.+..+ ..+..||+||++++
T Consensus 88 ~~~g---------------~~~-------------------~~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALG---------------AHL-------------------SAEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHH---------------TTS-------------------CHHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH-
T ss_pred HHHH---------------hhc-------------------ChhhhhhccCceEEeecCC-----CCcccCCHHHHHHH-
Confidence 0000 000 0011334567777766544 34567999998876
Q ss_pred HHHHHhcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 334 ia~~L~~~p~vLllDEPTs--GLD~~t~---~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++ +|...
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i-~H~~~ 182 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHASK 182 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEE-ecCCC
Confidence 57888999999999999 9997444 888999999876566666665 55443
No 150
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.45 E-value=7.4e-14 Score=169.01 Aligned_cols=100 Identities=25% Similarity=0.374 Sum_probs=84.5
Q ss_pred cc-eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 854 HS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 854 ~~-l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
.. +.++||+|.|+..+ +..+|+|||+.++||+.+||+||||||||||+++|+|-.. ..+|+|++||.
T Consensus 339 ~~~i~~~~v~~~y~~~~----------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARP----------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSCT----------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCCC----------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCE
Confidence 35 89999999884211 2358999999999999999999999999999999999865 46899999999
Q ss_pred cCCc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 933 ~~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
+... ...++.+|||+|+..+++ .||+|+|.|..
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~ 442 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGA 442 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcC
Confidence 8642 346778999999988876 59999999964
No 151
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.45 E-value=7e-14 Score=168.79 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=83.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||+|.|+.. ++.+|+|||+.++||+.+||+||||||||||+++|+|-.. ..+|+|++||.+
T Consensus 340 ~~i~~~~v~~~y~~~-----------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR-----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCCC-----------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 468999999988411 1357999999999999999999999999999999999865 458999999998
Q ss_pred CCc---ccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~~---~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
... ...++.+|||+|+..+++. ||+|++.|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR 441 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccC
Confidence 642 3567789999999888774 9999999864
No 152
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.44 E-value=8.1e-14 Score=168.22 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=83.9
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+.++||+|.|+.. ++.+|+|||+.++||+.+||+||||||||||+++|+|-.. ..+|+|++||.+
T Consensus 340 ~~i~~~~v~~~y~~~-----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK-----------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCCC-----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 468999999988421 1357999999999999999999999999999999999865 458999999988
Q ss_pred CC---cccccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 934 ~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.. ...+++.+|||+|+..+++. ||+|++.|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA 441 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccC
Confidence 54 34567889999999887764 9999999863
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.38 E-value=6.1e-16 Score=159.09 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (991)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 78899998765432 234567776545556788888877543210
Q ss_pred chhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccC---cccCCC--ChhHhHHH
Q 001957 258 TRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD---EMIRGI--SGGQKKRV 332 (991)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqrqRv 332 (991)
. . +-....|...+. +..+.+ |+|++|++
T Consensus 71 ----------~----~---------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L----A---------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H----T---------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h----c---------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000000000 011234 88999888
Q ss_pred HHHH------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 333 sia~------~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
.++. +++.+|+...+|+ |||+..... ++.++.+.. .+.++|.+.|...+++.+++|+|+ .+|+++.+
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 8777 8888888888884 899988777 888877643 455666654432678999999999 99999999
Q ss_pred cCHHHH
Q 001957 407 GPRELV 412 (991)
Q Consensus 407 G~~~~~ 412 (991)
|+++-+
T Consensus 177 ~~~~~~ 182 (189)
T 2bdt_A 177 MAGDPL 182 (189)
T ss_dssp ------
T ss_pred ecCCch
Confidence 987654
No 154
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.37 E-value=3.6e-16 Score=178.12 Aligned_cols=166 Identities=16% Similarity=0.050 Sum_probs=99.5
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCee----eEEEEC----CeeCCCccccceEEEEecCCC
Q 001957 167 ILKDVSGVIKP--GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS----GTVTYN----GHDMDEFVPQRTAAYISQHDN 236 (991)
Q Consensus 167 iL~~vs~~i~~--Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~----G~I~~n----G~~~~~~~~~~~~~yv~Q~d~ 236 (991)
+.+.|++.+++ |+.++|+||||||||||+++|+|+++++ + |+|.++ |.++ .
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~--------------- 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-A--------------- 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-S---------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-c---------------
Confidence 56789999999 9999999999999999999999999987 7 776653 2221 0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccc
Q 001957 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (991)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (991)
+..... +++.+...- . .........++ .++.....++
T Consensus 218 -~~~~~~-~~I~~~~q~------~----~~~~~t~~~nl-----------------------------~~~~~~~~~~-- 254 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQR------Y----IDYAVRHSHKI-----------------------------AFIDTDFITT-- 254 (365)
T ss_dssp -SCTTTH-HHHHHHHHH------H----HHHHHHHCSSE-----------------------------EEESSCHHHH--
T ss_pred -CChhHH-HHHHHHHHH------H----HHHHHhccCCE-----------------------------EEEeCCchHH--
Confidence 111112 223332100 0 00000000000 0000000111
Q ss_pred cCcccCCCChhHhHHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCc
Q 001957 317 GDEMIRGISGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L~-~~p~vLllDE---PT------sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~ 386 (991)
....+|+|++||..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. || .
T Consensus 255 ---~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~-~ 329 (365)
T 1lw7_A 255 ---QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP-S 329 (365)
T ss_dssp ---HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS-S
T ss_pred ---HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC-C
Confidence 12246677788888887764 5999999999 65 589999999999999887654456666653 55 3
Q ss_pred hhHhhcCeEEEec
Q 001957 387 ETYDLFDDIILLS 399 (991)
Q Consensus 387 ~~~~lfD~vilL~ 399 (991)
+..+++|.+.+|+
T Consensus 330 ~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 330 YLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666777666554
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.36 E-value=6.6e-14 Score=143.77 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=90.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHH
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSAR 252 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 252 (991)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999997753221 1234567777543 46788998877543
Q ss_pred hcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHH
Q 001957 253 CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332 (991)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRv 332 (991)
... ...... .++.++..+++...... +..+..+|+|++||+
T Consensus 78 ~~~------------~~~~~~------------------------~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYA------------KEGYFV------------------------ILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHH------------HTSCEE------------------------EECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHh------------ccCCeE------------------------EEeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 210 000000 00000000111111100 112346999999999
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 001957 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 333 sia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l 369 (991)
.++|++.++|+++ +|+.....+.+.++.+
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 9999999999876 6887777777766554
No 156
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.36 E-value=3.7e-14 Score=149.83 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=95.8
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH----HHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV----RETL 247 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l 247 (991)
.-..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|+...|+.+|+ .|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3457899999999999999999999999998862 3589999998776432 23567899997544443333 2222
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
.+.... .+.|
T Consensus 88 ~~~~~~--------------------------------------------------------------------yg~~-- 97 (219)
T 1s96_A 88 EVFGNY--------------------------------------------------------------------YGTS-- 97 (219)
T ss_dssp EETTEE--------------------------------------------------------------------EEEE--
T ss_pred HHHhcc--------------------------------------------------------------------CCCC--
Confidence 111100 0111
Q ss_pred HhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCeEEEec
Q 001957 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (991)
Q Consensus 328 qrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~G 407 (991)
+++ .+.++..++++||| ||+.++.++.+.+. .+.++++ +.|...++.+ |+ +.+| .+
T Consensus 98 -~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i-~th~~~~l~~---Rl--~~rG----~~ 153 (219)
T 1s96_A 98 -REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFI-LPPSKIELDR---RL--RGRG----QD 153 (219)
T ss_dssp -HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEE-ECSSHHHHHH---HH--HTTS----CS
T ss_pred -HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEE-ECCCHHHHHH---HH--HHcC----CC
Confidence 222 23444557999999 99999999998775 2445554 4555445444 43 7778 67
Q ss_pred CHHHHHHHHH
Q 001957 408 PRELVLEFFA 417 (991)
Q Consensus 408 ~~~~~~~~f~ 417 (991)
+.+++...+.
T Consensus 154 ~~e~i~~rl~ 163 (219)
T 1s96_A 154 SEEVIAKRMA 163 (219)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7887766554
No 157
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.36 E-value=1.4e-12 Score=132.50 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=69.1
Q ss_pred ccCCCChhHhHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 320 MIRGISGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 320 ~~~~LSGGqrqRvsia~~L~----~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
.+..||||||||++||++|+ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|| ..+...+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEE
Confidence 45689999999999999996 56799999999999999999999999998753 3555555444 4678999999
Q ss_pred EEec--CCeE-EEecCHHHH
Q 001957 396 ILLS--DGQI-VYQGPRELV 412 (991)
Q Consensus 396 ilL~--~G~i-v~~G~~~~~ 412 (991)
+.+. +|.. +.....++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEEETTEEEEEECCHHHH
T ss_pred EEEEecCCEEEEEEEEcHHH
Confidence 9764 5643 333444443
No 158
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.36 E-value=5.6e-13 Score=146.61 Aligned_cols=81 Identities=32% Similarity=0.455 Sum_probs=63.7
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+.++||+|.. +.+|+|||+.+++|+++||+|+|||||||||++|+|-.. ..+|+|+++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 57888888631 246999999999999999999999999999999999876 5689999999
Q ss_pred CcccccceeeEEeccCCCCCCCCHHHHHH
Q 001957 935 KQETFARISGYCEQNDIHSPFVTIYESLL 963 (991)
Q Consensus 935 ~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~ 963 (991)
.+|||+|+..+++. ||+|+|.
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh
Confidence 37999999887775 9999998
No 159
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=159.35 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=86.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
.+.+|+|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ . ...+.++|++|++.+++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~--t-~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK--T-VQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-------C-CEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc--c-eeeeeEEEEEecCCcccceee
Confidence 356999999998 99999999999999999999764311 2222222111 1 112457899998888889999
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCC
Q 001957 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (991)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (991)
.||+.|+...... . . ...+.+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-------------~---------~--------------~~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-------------N---------C--------------WQPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-------------h---------h--------------HHHHHHHH-H-----------------HH
Confidence 9999886432100 0 0 00011111 0 13
Q ss_pred CChhHhHHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHhhccCceEEEEEec
Q 001957 324 ISGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (991)
Q Consensus 324 LSGGqrqRvsia~~L~~~p~---vLllDEPT-sGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q 383 (991)
++.+++||+.||++++.+|+ +|++|||| +|||+... .+ ++.+. .+.++|+.+++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 55677889999999999999 99999999 69998763 33 44443 25566666654
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.35 E-value=8.5e-13 Score=138.23 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=58.3
Q ss_pred CCChhH--hHHHHHHHHHhcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHhhccCceEEEEEecCCc-----
Q 001957 323 GISGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSS--------TTFQIVNCLRQNIHINSGTAVISLLQPAP----- 386 (991)
Q Consensus 323 ~LSGGq--rqRvsia~~L~~~-p~vLllDEPTsGLD~~--------t~~~i~~~L~~l~~~~~~t~ii~i~q~~~----- 386 (991)
..|+++ ++++..+++++.+ |+++++||||+++|.. ...++++.|+++++..+.++|++.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 345554 5678888899885 9999999999999973 23557777888887667777765443321
Q ss_pred -------hhHhhcCeEEEecCC
Q 001957 387 -------ETYDLFDDIILLSDG 401 (991)
Q Consensus 387 -------~~~~lfD~vilL~~G 401 (991)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
No 161
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=1.6e-13 Score=155.13 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=85.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+|+++ ...+|++++|+|||||||||||++|+|.++++ -.|.|...+.++ ++......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc-------
Confidence 34444 57899999999999999999999999998764 135554433333 2222222344444321000
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
.++-
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (356)
T 3jvv_A 182 ----------------------------------------------------------------------------TLGF 185 (356)
T ss_dssp ----------------------------------------------------------------------------BSCH
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0111
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCC
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G 401 (991)
.+ +||++|..+|++|++|||| |..+...+++ .+. .|.++++++ |..+.+ +.+||++.|..|
T Consensus 186 ~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~-H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 186 SE----ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTL-HTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEE-SCSSHH-HHHHHHHHTSCH
T ss_pred HH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEE-ccChHH-HHHHHHhhhcCc
Confidence 11 8999999999999999999 6665444333 333 466665555 444444 889999999654
No 162
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.33 E-value=4.1e-13 Score=152.51 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=94.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-ccceEEEEe-cCCCC--CCCCC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYIS-QHDNH--IGEMT 242 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (991)
+++++|+.+++|++++|+||||||||||+++|+|+++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999998 999999985311111 345688888 54321 13334
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
+
T Consensus 241 ~------------------------------------------------------------------------------- 241 (361)
T 2gza_A 241 A------------------------------------------------------------------------------- 241 (361)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 4
Q ss_pred CCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecCCe
Q 001957 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~ 402 (991)
|..|+.++..+|+.+++||++. .++.+.|+.+.. ...+++.++|.. .+...+||+..|..|.
T Consensus 242 --------~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 242 --------ATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp --------HHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred --------HHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444455555778999999986 234445555432 334566666553 5788899999987764
No 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=3.6e-14 Score=147.65 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=53.1
Q ss_pred HHHHHcCCcccccccccCcccCCCChhHhHH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001957 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 301 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqR-vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
..++..+++.. .+++ ....+|+||||| +..+++++.+|.++++|||||+||.....++++.|.++..
T Consensus 131 ~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666532 1232 234699999999 8899999999998999999999999999999999998764
No 164
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.31 E-value=5.3e-14 Score=140.93 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.++++||+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 45899999999999999999999999999999999999 77 999999998774211111 2789987777 89999
Q ss_pred HHHHH
Q 001957 245 ETLAF 249 (991)
Q Consensus 245 E~l~f 249 (991)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.26 E-value=6.7e-14 Score=150.31 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHh
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARC 253 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~La---G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (991)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 998876 8999888765321 1123345566777778888999999875421
Q ss_pred --------cCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCc--cccc-------ccc
Q 001957 254 --------QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCAD-------TMV 316 (991)
Q Consensus 254 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~d-------t~v 316 (991)
.+..... .+ .+.+....... ...| ..+
T Consensus 102 ~~~~~~il~g~~~~~------~~------------------------------~~~l~~~~~~~~vi~L~~~~~~~l~r~ 145 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL------GQ------------------------------AEALDKICEVDLVISLNIPFETLKDRL 145 (246)
T ss_dssp CTTSCEEEESCCCSH------HH------------------------------HHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred cCCCeEEEECCCCCH------HH------------------------------HHHHHhhcCCCEEEEEECCHHHHHHHH
Confidence 1110000 00 00000000000 0000 011
Q ss_pred cCcccCCCChhHhHHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHhh
Q 001957 317 GDEMIRGISGGQKKRVTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~~L-~~~p~vLllD----EPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
.++.+..||| || +++ +.+|++++|| |||+|||..+...+.+.|+++.+
T Consensus 146 ~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 1344567999 65 667 9999999999 99999999999999999988754
No 166
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.2e-12 Score=150.34 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=103.0
Q ss_pred eeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC---ccccceEEEEecCCCCCCCCC
Q 001957 168 LKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---FVPQRTAAYISQHDNHIGEMT 242 (991)
Q Consensus 168 L~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~---~~~~~~~~yv~Q~d~~~~~lT 242 (991)
|++||+.+++|++ ++|+||||||||||+|+|+|..- .| .++.. ....+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999841 22 22211 112357899999988888999
Q ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHc-CCc----cccccc--
Q 001957 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLD----VCADTM-- 315 (991)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~-- 315 (991)
|.||+.|+.... .......+. .+ .....+.+|... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~i~---------------~~----------i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKPIV---------------EF----------IDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHHHH---------------HH----------HHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhHHH---------------HH----------HHHHHHHHHHHHHhhhhhhccccccccc
Confidence 999998764311 000000000 00 111223334433 443 112322
Q ss_pred --cc--CcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEE
Q 001957 316 --VG--DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378 (991)
Q Consensus 316 --vg--~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~i 378 (991)
+. .+...+|+-.+ +.|+++|..+++++++|||+..|.......+.+.+++-....|..++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~ 213 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIY 213 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEE
Confidence 11 11124576666 78999999999999999999999999888888888873333444443
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=4.5e-12 Score=134.80 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhccCceEEEEEecCCchh-------------------
Q 001957 340 GPALALFMDEISTGLDSS-------T-----TFQIVNCLRQNIHINSGTAVISLLQPAPET------------------- 388 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~-------t-----~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~------------------- 388 (991)
.+|+++++|||++.+|+. . ..+++..|+++++..+.|+|++ +|...+.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~-~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVIT-NQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-C-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEE-eeeeecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 3567777888777656666655 5544333
Q ss_pred HhhcCeEEEecCC
Q 001957 389 YDLFDDIILLSDG 401 (991)
Q Consensus 389 ~~lfD~vilL~~G 401 (991)
..++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2389999999865
No 168
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.23 E-value=7.3e-14 Score=141.75 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc------cc-ceEE----EEecCCCCCCCCCHHHHH
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQ-RTAA----YISQHDNHIGEMTVRETL 247 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (991)
++++|+|+||||||||+++|+|++++.....|.|.+||+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875334799999999854432 12 2355 778865543 100
Q ss_pred HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChh
Q 001957 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (991)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (991)
+ . . +. .+ ..+.+++. .|+ .+||.+++ +||||
T Consensus 77 -------~--~-~----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-E----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-H----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-h----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 0 00 00 01223333 133 57999986 59999
Q ss_pred HhHHHHHHHHHhcCCcE
Q 001957 328 QKKRVTTGEMMVGPALA 344 (991)
Q Consensus 328 qrqRvsia~~L~~~p~v 344 (991)
||||++|||+++++|++
T Consensus 108 q~qri~lARall~~p~i 124 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CCCEEEECSSGGGGGGG
T ss_pred CCcEEEEEecccCCCcc
Confidence 99999999999999876
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.21 E-value=3.3e-12 Score=145.58 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=93.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
+|++++ +++|++++|+|||||||||||++|+|+++++ -+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 678876 8999999999999999999999999998762 1699987776654 23345567787741
Q ss_pred HHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCCh
Q 001957 247 LAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326 (991)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 326 (991)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0010 0123
Q ss_pred hHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 327 GqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.++ ++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~v-i~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHLV-FGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCEE-EECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCEE-EEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 45555 444555 45888899987774
No 170
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.21 E-value=3.1e-14 Score=159.05 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCeeeEEEECCeeCCCccc------------------cceEEEE-
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL--------DPTLKVSGTVTYNGHDMDEFVP------------------QRTAAYI- 231 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~--------~~~~~~~G~I~~nG~~~~~~~~------------------~~~~~yv- 231 (991)
++++|+|+||||||||||.|.|.. .++ .|+|.+||.++..... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 455 8999999998754321 1234555
Q ss_pred --ecCCCCCCCCCHHHHHHHHHHhcCCCchhhhhHHH-HHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCC
Q 001957 232 --SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL-ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (991)
Q Consensus 232 --~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (991)
+|+..+++..+|.||..++... .....+ ...+. .....++.++..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~----------------------~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVL----------------------CQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHH----------------------HHHEEEEEEEEEEET
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccc----------------------cCeEEECCEEEEEEH
Confidence 4655556677777776654100 000000 00000 000001112223344
Q ss_pred cccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh
Q 001957 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (991)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~ 388 (991)
.+..+.. ..+|+||+||+..+++++.+|+++ ||| ..+.+.|+++. .+.+++++.|.+ .++
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~-~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGD-IDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSC-CCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccC-CCH
Confidence 3333322 258999999998888888888877 888 67788888763 456666655543 344
Q ss_pred HhhcC
Q 001957 389 YDLFD 393 (991)
Q Consensus 389 ~~lfD 393 (991)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 44443
No 171
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.18 E-value=3.9e-12 Score=147.73 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=69.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc------c---ccceEEEEecCCCCC
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF------V---PQRTAAYISQHDNHI 238 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (991)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 47899999999999999999999999999999999887 89999988775432 1 134689999998888
Q ss_pred CCCCHHHHHHHHH
Q 001957 239 GEMTVRETLAFSA 251 (991)
Q Consensus 239 ~~lTV~E~l~f~~ 251 (991)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999874
No 172
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.17 E-value=2e-12 Score=129.46 Aligned_cols=80 Identities=23% Similarity=0.138 Sum_probs=66.9
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
+.+|++||+.++||+++||+||||||||||+++|+|-. + .+|+|.++|++... ... ..+|+.|+..+. .+||+|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~-~~~-~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVE-EYN-IAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEE-EEE-ETTEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeee-ecc-CCCcceeccccc-cCCcHH
Confidence 56899999999999999999999999999999999987 2 58999999998752 222 124899987666 899999
Q ss_pred HHHhhh
Q 001957 961 SLLFSA 966 (991)
Q Consensus 961 sL~fsA 966 (991)
.+.+.+
T Consensus 94 ~l~~~g 99 (158)
T 1htw_A 94 ELEFMG 99 (158)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 997654
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.16 E-value=7e-12 Score=140.17 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=62.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---------cceEEEEecCCCCCCCCCHHH
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---------QRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.|++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999999987 8999999998754321 123569999988899999999
Q ss_pred HHHHHH
Q 001957 246 TLAFSA 251 (991)
Q Consensus 246 ~l~f~~ 251 (991)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 174
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=3.7e-12 Score=143.34 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=80.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCeeeEEEEC-CeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYN-GHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~-~~~~~~G~I~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
-|++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..+++..||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35566654 4899999999999999999999999998 87 9999987 765432 2346789999998888899999
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
|+ .. .+.. ..+ ....++++++.+|+.+..|.. ..++
T Consensus 280 e~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~-----~~~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCK-----HDAD 315 (358)
T ss_dssp TC---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCC-----SSSC
T ss_pred Hh---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCC-----cccC
Confidence 83 21 1110 000 001123456778887666543 4579
Q ss_pred ChhHhHHHHHHHHH
Q 001957 325 SGGQKKRVTTGEMM 338 (991)
Q Consensus 325 SGGqrqRvsia~~L 338 (991)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999865
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=5.6e-12 Score=128.40 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=39.5
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 339 VGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 339 ~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999996 9999999999998887654 577888888777665
No 176
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.13 E-value=1.3e-10 Score=132.55 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcc-------cccccccC----cccCCCChhHhHHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHH
Q 001957 299 TDYYLKVLGLDV-------CADTMVGD----EMIRGISGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTF 360 (991)
Q Consensus 299 ~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqrqRv------sia~~L~~~-p~vLllDEPTsGLD~~t~~ 360 (991)
++..++.+++.+ ..+..+.+ ..+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777655 11222222 34568999999988 557888999 9999999999999999999
Q ss_pred HHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEec
Q 001957 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (991)
Q Consensus 361 ~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~ 399 (991)
.+.+.|+++. .+.++|++.|++ ++..++|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCeEEEEEChH--HHHhhCCEEEEEE
Confidence 9999999863 245666666553 4789999999997
No 177
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.13 E-value=4.7e-12 Score=139.34 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=82.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (991)
+++.+++|.||||||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 22 0 1344566699887664 588899887631000
Q ss_pred CCchhhhhHHHHHHHHHcCCCCC-CChHHHHHHHHhhhhhhhHHHHHHHHHcCCccccccccc-----CcccCCCChhHh
Q 001957 256 VGTRYEMLTELARREKAAGIKPD-PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG-----DEMIRGISGGQK 329 (991)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg-----~~~~~~LSGGqr 329 (991)
.-.. .+. |+ .|.+ .....++.+.- ..+|..+ ..+...+||||+
T Consensus 92 l~~~-------------~g~-p~a~d~~---------------~l~~~l~~l~~--g~~t~~~~~v~~p~y~~~~sgGq~ 140 (290)
T 1odf_A 92 LLQG-------------RGL-PGTHDMK---------------LLQEVLNTIFN--NNEHPDQDTVVLPKYDKSQFKGEG 140 (290)
T ss_dssp GGSS-------------SCS-TTSBCHH---------------HHHHHHHHHTC--------CCEEEECCEETTHHHHTC
T ss_pred hhhh-------------ccC-cchhHHH---------------HHHHHHHHhhc--cCccccCcceeeccCccccCCccc
Confidence 0000 000 10 1111 11223444422 2222111 134468999999
Q ss_pred HHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 001957 330 KRVTTG--EMMVGPALALFMDEISTGLDSST 358 (991)
Q Consensus 330 qRvsia--~~L~~~p~vLllDEPTsGLD~~t 358 (991)
||+.+| +++ +|+|||+|||++|||+..
T Consensus 141 ~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 141 DRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccccceEc--CCCEEEEeCccccCCccc
Confidence 999987 554 999999999999999853
No 178
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=4.3e-13 Score=150.87 Aligned_cols=181 Identities=14% Similarity=0.065 Sum_probs=109.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEecCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNH 237 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 237 (991)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.++ +|+|.++|.++.... .++.++|++|+...
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 45899999999999999999999999999999999999887 899999998874321 24568999998877
Q ss_pred CCCC------------CHHHHHHHHHHhc--------CCCchhhhhHHHHHHHHHcCC---CCCCC-hHHHHHHHHhhhh
Q 001957 238 IGEM------------TVRETLAFSARCQ--------GVGTRYEMLTELARREKAAGI---KPDPD-IDVYMKAIATEGQ 293 (991)
Q Consensus 238 ~~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 293 (991)
++.. +++|.+... ... .+|-.... ..+ ....++ .-++. .+. .+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~-~~v---~~~~d~vl~v~d~~~~~~-~~~------ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSE-TAV---ADLTDFFLVLMLPGAGDE-LQG------ 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCH-HHH---HTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcch-hhH---HhhCCEEEEEEcCCCccc-HHH------
Confidence 6542 233333111 000 01110000 000 000000 00000 000 000
Q ss_pred hhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHH
Q 001957 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLR 367 (991)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~------~p~vLllDEPTsGLD~~t~~~i~~~L~ 367 (991)
......+....+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.
T Consensus 187 -i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 187 -IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred -HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 00001111112222 112210 124579999999999998887 578877 99999999999999998
Q ss_pred HHh
Q 001957 368 QNI 370 (991)
Q Consensus 368 ~l~ 370 (991)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=1.8e-11 Score=140.85 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=102.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHH
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (991)
-++|++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 489999999999999999999999999999999843 2334433322 223555555430 111111111
Q ss_pred HH---HHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCC
Q 001957 248 AF---SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (991)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (991)
-+ +....+.+. ...+.. ..++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 000000 0011123333332 2345679
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeE
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~v 395 (991)
|+|++||+.+|++|+..|.+|++ +++|...+ ..++.+++..+..+.+++.++.+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99998776 55566655554445666666655555666666544
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.05 E-value=2.5e-12 Score=148.26 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=91.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------ccceEEEEe-----
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYIS----- 232 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~----- 232 (991)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.++|.++.... ..+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999887 899999998774211 112334444
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 233 ----QHDNH--IGE----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
|++.. +++ .|+.+++.++..-+..-.. +.. .+. ...++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------lh~-~~~--------------~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------LHT-NTA--------------VGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------ECC-SSS--------------HHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------cch-hhH--------------HHHHH-H
Confidence 77554 354 6888888776421110000 000 000 01112 3
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeE
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLl 346 (991)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667776532 235799999999 9999999999866
No 181
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.04 E-value=4.1e-11 Score=132.71 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=78.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCcccc---ceEEEEecCCCCC-----CCCCHH
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVPQ---RTAAYISQHDNHI-----GEMTVR 244 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 244 (991)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 98887 999999 99887643211 2479999987543 78999
Q ss_pred HHH--HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcc-cccccccCccc
Q 001957 245 ETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMI 321 (991)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (991)
|++ .|.. . .++. .+..+-.+.. +....++++++.++|++ .++. ++
T Consensus 238 e~l~~~f~~-~----------~~~~--c~~~~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~-----~~ 285 (302)
T 2yv5_A 238 REVRNYFRE-F----------LRYQ--CKYPDCTHTN--------------EPGCAVKEAVKNGEISCERYKS-----YL 285 (302)
T ss_dssp GGGGGGCGG-G----------HHHH--HHSTTCCSSS--------------CTTCHHHHHHHTTSSCHHHHHH-----HH
T ss_pred HHHHHHHHH-H----------HHcc--CCCCCCCCCC--------------CCCCHHHHHHHcCCCCHHHHHH-----HH
Confidence 888 4431 0 0000 0000000000 11124567888999975 5553 45
Q ss_pred CCCChhHhHHHHHHH
Q 001957 322 RGISGGQKKRVTTGE 336 (991)
Q Consensus 322 ~~LSGGqrqRvsia~ 336 (991)
+.|||.++|++.||+
T Consensus 286 ~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 KIIKVYLEEIKELCR 300 (302)
T ss_dssp HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 679998899998886
No 182
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.03 E-value=9e-13 Score=155.82 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=65.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHH
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (991)
.+++++++.+++|+.++|+|||||||||||++|+|+++++ +|.|+++|.+--.......+.++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999998 9999999865222222345667776654333467777
Q ss_pred HHHHHHH
Q 001957 246 TLAFSAR 252 (991)
Q Consensus 246 ~l~f~~~ 252 (991)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 7776655
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.01 E-value=1.4e-10 Score=132.88 Aligned_cols=63 Identities=6% Similarity=-0.029 Sum_probs=44.9
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHhhccCceEEEEEecC--C----------------chhH
Q 001957 340 GPALALFMDEISTGLDSSTT------------FQIVNCLRQNIHINSGTAVISLLQP--A----------------PETY 389 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~~t~------------~~i~~~L~~l~~~~~~t~ii~i~q~--~----------------~~~~ 389 (991)
.+|+++++|||++.+|.... .++++.|+++++..+.|+|++.|-. . ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996543 6788899999887777777765541 0 2245
Q ss_pred hhcCeEEEecCCe
Q 001957 390 DLFDDIILLSDGQ 402 (991)
Q Consensus 390 ~lfD~vilL~~G~ 402 (991)
..+|.++.|..|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999997653
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.96 E-value=8.1e-14 Score=144.88 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEEecC
Q 001957 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (991)
Q Consensus 334 ia~-~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vilL~~ 400 (991)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| .. ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~---~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK---EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG---ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh---cc-CCceEEEECCC
Confidence 444 6788999999999999999999999999998765421 1122 22 67999988863
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=6.7e-10 Score=125.09 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=68.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCeeCCCcc-ccceEEEEecCCCCCCCCCHHHHHHHHHHhcCCCc
Q 001957 181 TLLLGPPSSGKTTLLLALAG-KLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (991)
Q Consensus 181 ~allGpsGsGKSTLL~~LaG-~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (991)
++|.||||+|||||+++|++ ++.+. .|.|.++|.+..... .+..+++++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 67777 899999998764322 13557788886543111100 00000
Q ss_pred hhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHHHHH
Q 001957 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (991)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L 338 (991)
+ ..+...++.+......+.. . .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhcccccc-----c-cccc-----------c
Confidence 0 0001111221111001110 0 3566 7
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCC
Q 001957 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385 (991)
Q Consensus 339 ~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~ 385 (991)
..+|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998853 3455666655554
No 186
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=3.4e-10 Score=112.12 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.+|+++ +|+.++|+||||||||||+++|++.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666 8999999999999999999999998765
No 187
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=3e-12 Score=146.06 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=115.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhc------------CcCCCCCeeeEEEECCeeCCC----ccccceE---EEEecC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPTLKVSGTVTYNGHDMDE----FVPQRTA---AYISQH 234 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG------------~~~~~~~~~G~I~~nG~~~~~----~~~~~~~---~yv~Q~ 234 (991)
.+++|..++|+|+||||||||+|+|+| ...|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 557899999999999999999999999 33455 8999999854321 1223333 366676
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccc
Q 001957 235 DNHIGEMTVRETL--AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (991)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (991)
.-+...++..|.| .|-..++.. +.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7677777766655 333322211 00111111111
Q ss_pred cccccCcccCCCChhHhHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-hhccCceEEEEEecCCchhH
Q 001957 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCLRQN-IHINSGTAVISLLQPAPETY 389 (991)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~~L~~~p--~vLllDEPTsGLD~~t~~~i~~~L~~l-~~~~~~t~ii~i~q~~~~~~ 389 (991)
+..+..+||+. +| +++++|||+.++|.......++.++.. .+ .+.|+ + .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti-~--sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTL-E--MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSS-S--HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCcc-c--cccHHHHH
Confidence 22233466653 88 999999999999999999999999887 43 45553 2 56778899
Q ss_pred hhcCeEE-EecCC-eEEEecCH
Q 001957 390 DLFDDII-LLSDG-QIVYQGPR 409 (991)
Q Consensus 390 ~lfD~vi-lL~~G-~iv~~G~~ 409 (991)
++||++. +|.+| ++++.|+.
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHhccCCceeecCCC
Confidence 9999999 99999 99887764
No 188
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.89 E-value=1.3e-11 Score=128.99 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=28.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.++|++++|+||||||||||+++|+|++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
No 189
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.88 E-value=1.3e-10 Score=126.49 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=48.0
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
.+||+|+|||||||||++|+|... ..+|+|.++|.+......++.+||++|++...+.+||.|++.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcc
Confidence 479999999999999999999876 468999999998776667789999999999999999999999976554
No 190
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.88 E-value=3.1e-12 Score=139.84 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=94.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGE 240 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (991)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999987644221 23456666652 34455
Q ss_pred CCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcc
Q 001957 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (991)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (991)
+++.|++.+....++. .. .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHH-----HHH
Confidence 5555555542211000 00 00 001111 123
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCL 366 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs------------GLD~~t~~~i~~~L 366 (991)
...|||||+||+.++++++.+|++| ||+.. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3469999999999999999999975 98864 23666666666654
No 191
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=2.2e-10 Score=126.79 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCccc---cceEEEEecCCC-----------
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP---QRTAAYISQHDN----------- 236 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~---~~~~~yv~Q~d~----------- 236 (991)
.+.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|++++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999998 999999 8988764321 135789999864
Q ss_pred -----CCCCCCHHHHHHHH
Q 001957 237 -----HIGEMTVRETLAFS 250 (991)
Q Consensus 237 -----~~~~lTV~E~l~f~ 250 (991)
++|++|| ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888999 988885
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=5.4e-11 Score=132.16 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=60.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCeeeEEEE---CCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHH
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTY---NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~--~~~~~~G~I~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (991)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 77 899999 88765321 23456788 877778899999999887
Q ss_pred HHh
Q 001957 251 ARC 253 (991)
Q Consensus 251 ~~~ 253 (991)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 193
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.83 E-value=3.9e-10 Score=130.92 Aligned_cols=100 Identities=16% Similarity=0.026 Sum_probs=80.2
Q ss_pred cceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc-
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY- 932 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~- 932 (991)
..+.++++++.+.. ...+|+++ +.+.+|+.++|+|+|||||||||++|+|-... ..|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t------------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT------------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCC------------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCC
T ss_pred CceEEeccceecCC------------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEecee
Confidence 34677777765531 23579999 99999999999999999999999999998753 4799999998
Q ss_pred --cCCc--------ccccceeeEEecc-CCCCCCCCHHHHHHhhhhc
Q 001957 933 --PKKQ--------ETFARISGYCEQN-DIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 933 --~~~~--------~tf~r~~GY~eQ~-Dih~p~~TVrEsL~fsA~L 968 (991)
+... ...+|.++||.|+ +...+.+||.|++.+.|..
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~ 241 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAED 241 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3321 2367889999996 5568899999999998764
No 194
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.80 E-value=1e-09 Score=117.64 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=50.1
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
++.+|+|||+.+++|.++||.|+||||||||+++|+|.. | .+.++ ..++.+||+.|++ ..+.+|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G----~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL--G----QNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH--T----GGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh--c----hhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 467899999999999999999999999999999999865 2 22222 2467789999987 55689999
Q ss_pred HHHHhhhh
Q 001957 960 ESLLFSAW 967 (991)
Q Consensus 960 EsL~fsA~ 967 (991)
|.+.+...
T Consensus 77 ~~~~~~~~ 84 (245)
T 2jeo_A 77 QKAKALKG 84 (245)
T ss_dssp HHHHHHTT
T ss_pred Hhhhhhcc
Confidence 99987544
No 195
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.80 E-value=9.1e-10 Score=115.99 Aligned_cols=68 Identities=16% Similarity=0.000 Sum_probs=44.9
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC----cccccceeeEEeccCCCCCCC
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETFARISGYCEQNDIHSPFV 956 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~----~~tf~r~~GY~eQ~Dih~p~~ 956 (991)
-|+|||+.+++|+++||+||||||||||+++|+|.. . |+|.+ |.+.. .....+..||++|+...++.+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 399999999999999999999999999999999976 2 67888 66531 122456789999987655443
No 196
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.80 E-value=1.9e-11 Score=137.29 Aligned_cols=154 Identities=20% Similarity=0.224 Sum_probs=94.8
Q ss_pred eeeeceEEEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCeeCCCc---cccceEEEEecC
Q 001957 166 TILKDVSGVIKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEF---VPQRTAAYISQH 234 (991)
Q Consensus 166 ~iL~~vs~~i~~G-------e~~allGpsGsGKSTLL~~LaG~~~~~~-~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~ 234 (991)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777766 7899999999999999999999873221 1367776666554321 113568999987
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccc
Q 001957 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (991)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (991)
+.+.+ ++.|+|.......+.. .. .... .....++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~------------------------~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQID----IM--IGKG------------------------PSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhcccc----ee--eccC------------------------cccccccccCCCeEEEE-ecC
Confidence 76554 7888885443221100 00 0000 00001222333445533 444
Q ss_pred cccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Q 001957 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN 373 (991)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~ 373 (991)
.. ..||+|+|||+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Cc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 33 47999999998543 7788888899999998877543
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.80 E-value=1.3e-09 Score=123.62 Aligned_cols=83 Identities=20% Similarity=0.106 Sum_probs=63.0
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-cccccceeeEEe-ccCCC--CCCCCH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCE-QNDIH--SPFVTI 958 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-~~tf~r~~GY~e-Q~Dih--~p~~TV 958 (991)
++++||+.+++|++++|+|+||||||||+++|+|.-.. .+|.|+|+|...- ....++.++|+. |.+.. ++..|+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 45999999999999999999999999999999998653 4799999986421 223677889999 66554 489999
Q ss_pred HHHHHhhhh
Q 001957 959 YESLLFSAW 967 (991)
Q Consensus 959 rEsL~fsA~ 967 (991)
+|+|.+..+
T Consensus 242 ~~~i~~~l~ 250 (361)
T 2gza_A 242 ATLLRSCLR 250 (361)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998543
No 198
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.78 E-value=9.1e-10 Score=121.77 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCC-CC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HS 953 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Di-h~ 953 (991)
++++|+.+++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+. .+ ++.+||++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 356888899999999999999999999999999854 2358999999875421 23 236899999988 89
Q ss_pred CCCCHHHHHHhhh
Q 001957 954 PFVTIYESLLFSA 966 (991)
Q Consensus 954 p~~TVrEsL~fsA 966 (991)
|..||+|++.+..
T Consensus 168 ~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 168 AATVLSKAVKRGK 180 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.76 E-value=3.2e-10 Score=118.31 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=53.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
...|+| -.+++|+++||+||||||||||+++|+|-.. .+.+++.+.+.+.. ...++.+||++|+...++.+||+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence 345777 5899999999999999999999999999864 34455555554432 223567899999988888999988
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
++.+
T Consensus 84 ~l~~ 87 (207)
T 1znw_A 84 ELLE 87 (207)
T ss_dssp CEEE
T ss_pred Ccee
Confidence 8753
No 200
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=1.3e-09 Score=120.41 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=43.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCeeCCCccc-cce-EEEEecCCCCCC----CCCHH
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY---NGHDMDEFVP-QRT-AAYISQHDNHIG----EMTVR 244 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~---nG~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~ 244 (991)
.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|++|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45689999999999999999999999999887 999999 8877654321 122 689999987655 6899
Q ss_pred HHHH
Q 001957 245 ETLA 248 (991)
Q Consensus 245 E~l~ 248 (991)
|+|.
T Consensus 245 e~l~ 248 (307)
T 1t9h_A 245 EELG 248 (307)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8884
No 201
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.72 E-value=7.4e-10 Score=123.07 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=53.3
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccC
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRl 970 (991)
+++|+++||+|+||||||||+++|+|--.. . +|. +.+||++|++.|.|. ||+|++.+.++...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCC
Confidence 799999999999999999999999997542 1 221 457999999999998 99999876443223
Q ss_pred CCCCCH
Q 001957 971 SPEVDS 976 (991)
Q Consensus 971 p~~v~~ 976 (991)
|...+.
T Consensus 150 ~~~~d~ 155 (312)
T 3aez_A 150 PESYNR 155 (312)
T ss_dssp GGGBCH
T ss_pred ChHHHH
Confidence 444433
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=3.9e-10 Score=118.95 Aligned_cols=79 Identities=15% Similarity=0.029 Sum_probs=61.9
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCH----HHHHHh
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI----YESLLF 964 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TV----rEsL~f 964 (991)
-..++|++++|+||||||||||+++|+|......+.|.|.++|++.. ...++..||++|....++.+|+ .|++.|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~-~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR-PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC-cccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 35689999999999999999999999998652247899999998864 3345678999999888888888 777776
Q ss_pred hhhc
Q 001957 965 SAWL 968 (991)
Q Consensus 965 sA~L 968 (991)
.+.+
T Consensus 90 ~~~~ 93 (219)
T 1s96_A 90 FGNY 93 (219)
T ss_dssp TTEE
T ss_pred Hhcc
Confidence 5544
No 203
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.70 E-value=2.7e-09 Score=124.41 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~ 222 (991)
..+|+|||+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 4589999999999 999999999999999999999999998 99999999987643
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.68 E-value=3.6e-09 Score=114.55 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=68.5
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-eEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
+|+||| ++||+++||+|||||||||||++|+|-.. .. +|+|.++|.|.. -.++...+|++|..+.....+.+.+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~-~~~~~~~~~v~q~~~gl~~~~l~~~ 90 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 90 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce-eecCCcceeeeHHHhCCCHHHHHHH
Confidence 488999 99999999999999999999999999753 23 689999998864 2345556788885544333555655
Q ss_pred HHhhhhccCCCCC-------CHHHHhccc
Q 001957 962 LLFSAWLRLSPEV-------DSETRKVGT 983 (991)
Q Consensus 962 L~fsA~LRlp~~v-------~~~~k~~~v 983 (991)
|. ..||+.+++ +.++....+
T Consensus 91 la--~aL~~~p~illlDEp~D~~~~~~~l 117 (261)
T 2eyu_A 91 LR--AALREDPDVIFVGEMRDLETVETAL 117 (261)
T ss_dssp HH--HHHHHCCSEEEESCCCSHHHHHHHH
T ss_pred HH--HHHhhCCCEEEeCCCCCHHHHHHHH
Confidence 54 456666666 666654433
No 205
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.68 E-value=4.2e-10 Score=124.17 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEE
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~ 928 (991)
.+.++||+|.++ ..+|+|||..++||+++||+||||||||||+++|+|-- +|.|.
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~ 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL 155 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE
Confidence 378889998764 13599999999999999999999999999999999876 45663
No 206
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.67 E-value=9.4e-09 Score=113.73 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=79.1
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHH
Q 001957 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250 (991)
Q Consensus 171 vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (991)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.... + ..|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~------~-------------a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRA------A-------------AIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCH------H-------------HHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccH------H-------------HHHHH---
Confidence 34556899999999999999999999999998775 67787766543110 0 00111
Q ss_pred HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhH
Q 001957 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330 (991)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrq 330 (991)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233455542 2357899999
Q ss_pred HH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001957 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (991)
Q Consensus 331 Rv---sia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~ 370 (991)
++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999974 334455666665543
No 207
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.67 E-value=3.5e-09 Score=119.45 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=66.2
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCC-CCC
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDI-HSP 954 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Di-h~p 954 (991)
+.+++.+++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+. .+ ++.++|++|+.. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 45788889999999999999999999999999854 2358999999875421 22 346899999988 899
Q ss_pred CCCHHHHHHhhh
Q 001957 955 FVTIYESLLFSA 966 (991)
Q Consensus 955 ~~TVrEsL~fsA 966 (991)
..||+|++.+..
T Consensus 226 ~~tv~e~l~~~~ 237 (359)
T 2og2_A 226 ATVLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999999999853
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.67 E-value=6.2e-10 Score=116.44 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc-ccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR-kt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
++.+|+|| ++|+++||+|||||||||||++|+|- .+.|.|.+. .++ .+ ....++.+||++|+.
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~-~~~-~~--~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRI-ILT-RP--AVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEE-EEE-EC--SCCTTCCCCSSCC--
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeE-Eec-CC--chhhhcceEEecCCH
Confidence 45789986 89999999999999999999999997 235666542 122 22 124567899999975
No 209
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.7e-09 Score=126.18 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=63.3
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE-E-EEEcCccCCcccccceeeEEeccC---CCCCCCCHH
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-N-ITISGYPKKQETFARISGYCEQND---IHSPFVTIY 959 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G-~-I~inG~~~~~~tf~r~~GY~eQ~D---ih~p~~TVr 959 (991)
.++|+.+++|+.++|+|+||||||||+++|+|-.. ..+| + |++||.+ +|.+||++|+. .+.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~~------~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLDP------QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECCT------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCCc------cCCeeeeccchhhcccccccchh
Confidence 36889999999999999999999999999999865 3578 8 9999932 56789999988 366778999
Q ss_pred HHHHhhhhc
Q 001957 960 ESLLFSAWL 968 (991)
Q Consensus 960 EsL~fsA~L 968 (991)
|++ |.+..
T Consensus 201 eni-~~~~~ 208 (460)
T 2npi_A 201 LPT-WGQSL 208 (460)
T ss_dssp CTT-CSCBC
T ss_pred hhh-ccccc
Confidence 998 76553
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.64 E-value=6.4e-08 Score=102.69 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=44.0
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHhhccCceEEEEEecCCch--------hHhhcCeEEEecC
Q 001957 340 GPALALFMDEISTGL--DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE--------TYDLFDDIILLSD 400 (991)
Q Consensus 340 ~~p~vLllDEPTsGL--D~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~--------~~~lfD~vilL~~ 400 (991)
.+|+++++|+|++.+ |.....+++..|.++++..+.++|++.| ...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h-~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ-VSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE-CC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655667777777777666667666554 4433 5678899999964
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.64 E-value=4.4e-09 Score=122.29 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------c--ccceeeEEeccCCCCC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------T--FARISGYCEQNDIHSP 954 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------t--f~r~~GY~eQ~Dih~p 954 (991)
-++||+.+++|++++|+|+||||||||+..|||... ...|+|.++|...... . .++.+||+.|+....|
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 357888899999999999999999999999999854 2358999987654321 2 2566899999988899
Q ss_pred CCCHHHHHHhh
Q 001957 955 FVTIYESLLFS 965 (991)
Q Consensus 955 ~~TVrEsL~fs 965 (991)
..||+++|.+.
T Consensus 361 ~~tV~e~l~~a 371 (503)
T 2yhs_A 361 ASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 212
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.62 E-value=4.7e-08 Score=107.76 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=86.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (991)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++. ...++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~---~r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDT---YRIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCC---SSTTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCc---ccchHHHHHHHHHH---
Confidence 479999999999999999999999998754 45 2355666543 13445555544321
Q ss_pred CCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhHhHHHHHH
Q 001957 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335 (991)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia 335 (991)
.+|++... ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~~----------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLEV----------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCCB----------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeEe----------cCC-HHHHHHHHH
Confidence 12222110 012 223345555
Q ss_pred HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh---ccCceEEEEEecCCchhHhhcCeEEEecCCeEEEe
Q 001957 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH---INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406 (991)
Q Consensus 336 ~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~---~~~~t~ii~i~q~~~~~~~lfD~vilL~~G~iv~~ 406 (991)
+ +.+|+++|+| |+|+|+.....+.+.. ++.. ..+..+|+...|...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999986665444433 3322 11223333235555677777887766777777764
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=9.7e-10 Score=126.19 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=61.6
Q ss_pred eeeccCceeeeeCCe--------------------EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCccccc
Q 001957 881 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA 940 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~--------------------ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~ 940 (991)
..+|+|||..+++|+ .+||+|+|||||||||++|+|... ..+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357999999999999 999999999999999999999865 34688888886642
Q ss_pred ceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 941 RISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 941 r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
|. ||+.|.+ +.|++||+|++.|.
T Consensus 109 ~~-~~v~q~~-~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 109 ME-RHPYKHP-NIPNVVFWDLPGIG 131 (413)
T ss_dssp CC-CEEEECS-SCTTEEEEECCCGG
T ss_pred ee-EEecccc-ccCCeeehHhhccc
Confidence 22 8999985 57899999887664
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.60 E-value=1.7e-09 Score=124.22 Aligned_cols=76 Identities=24% Similarity=0.201 Sum_probs=55.9
Q ss_pred ccCceeeeeCCeE--EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 884 LNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 884 L~~VSg~~~pG~l--tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
|++||..+++|+. +||+|+|||||||||++|+|....|. -. ... ......+.+||+.|.+...+.+||.|+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~----~~-~~~--~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE----PA-THT--QPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCC----cC-CCC--CccceEeeEEEEeecCccccccchhhh
Confidence 8999999999999 99999999999999999999853221 11 111 112335678999999888889999999
Q ss_pred HHhhh
Q 001957 962 LLFSA 966 (991)
Q Consensus 962 L~fsA 966 (991)
+.|..
T Consensus 103 ~~~g~ 107 (427)
T 2qag_B 103 VGFGD 107 (427)
T ss_dssp ECCCC
T ss_pred hhhhh
Confidence 87753
No 215
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.59 E-value=5.6e-09 Score=115.84 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=78.0
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeee-------------------eCCeEEEEeeccCCChhhhhhhhh
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~-------------------~pG~ltALmG~SGAGKTTLldvLa 915 (991)
.++++||+..+. .++++|+..+ ++|+++||+|+||||||||+++|+
T Consensus 37 ~i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 367788875541 2367777766 899999999999999999999999
Q ss_pred ccccCCeeeEEEEE---cCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhccCCC
Q 001957 916 GRKTGGYITGNITI---SGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972 (991)
Q Consensus 916 gRkt~G~i~G~I~i---nG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LRlp~ 972 (991)
|....-..+|+|.+ +|+.... ...+..||+ |...+.+.+|+.|.+.+-+.++...
T Consensus 102 ~~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~ 159 (308)
T 1sq5_A 102 ALLSRWPEHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV 159 (308)
T ss_dssp HHHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC
T ss_pred HHHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC
Confidence 96421123688999 9998653 345667999 7777889999999999988887543
No 216
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.59 E-value=3.5e-09 Score=128.29 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=99.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCC--------
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-------- 236 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-------- 236 (991)
..+++++++.+++|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.+... ..++|+++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45889999999999999999999999999999999999875 1389999988776543 45788876421
Q ss_pred --------------CCCCCCHHHHHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHH
Q 001957 237 --------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302 (991)
Q Consensus 237 --------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (991)
.+..+++.+|+... .+... +.+-+. ... ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~--------------------~~~~v~-----------~~~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRT--------------------KAPFID-----------ATG---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTCS--------------------SCCEEE-----------CTT---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccCC--------------------CCCEEE-----------cCC---CCH
Confidence 11111111111100 00000 000000 000 001
Q ss_pred HHHcCCcccccccccCcccCCCChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001957 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (991)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~ 368 (991)
.+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12223211111 1124799999999999999999999999999998 898888777777764
No 217
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.58 E-value=1.8e-08 Score=117.79 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=107.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCH
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (991)
....|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|+.- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 356799999889999999999999999999999999875432 22 12344432 2333
Q ss_pred HHHHHHH-HHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccC
Q 001957 244 RETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (991)
Q Consensus 244 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (991)
.+...-. +...+... ..+ ....+ ..+.+ ..+...++.++..+.. +- ...
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~~g~l----~~~~~------------~~~~~a~~~l~~~~l~---i~--d~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----RTGKL----TPEDW------------GKLTMAMGSLSNAGIY---ID--DTP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----HTSCC----CHHHH------------HHHHHHHHHHHSSCEE---EE--CCT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----hcCCC----CHHHH------------HHHHHHHHHHhcCCEE---EE--CCC
Confidence 2222110 00011110 000 00000 00000 0112223333322211 11 124
Q ss_pred CCChhHhHHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHhhccCceEEEEEec---------
Q 001957 323 GISGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCLRQNIHINSGTAVISLLQ--------- 383 (991)
Q Consensus 323 ~LSGGqrqRvsia~~L~--~~p~vLllDEPTsGLD~--------~t~~~i~~~L~~l~~~~~~t~ii~i~q--------- 383 (991)
++|.+|.+ +.++.++ .+|+++++|+++...+. ....++.+.|+.+++..+.++|++.|-
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 68999987 4566665 68999999999997742 334678888999988777666665440
Q ss_pred --CC-------chhHhhcCeEEEecCCeE
Q 001957 384 --PA-------PETYDLFDDIILLSDGQI 403 (991)
Q Consensus 384 --~~-------~~~~~lfD~vilL~~G~i 403 (991)
|. ..+.+.+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22 157788999999987654
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.57 E-value=1.7e-08 Score=113.04 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
+|+++|..+++|++++|+|+|||||||||++|+|-... .+|.|+|+|.+.-. ...++.++|+.| ...+.|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~ 232 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADC 232 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC-----CChhHHHH
Confidence 58999999999999999999999999999999998653 47999999976321 225677889886 78899999
Q ss_pred HHh
Q 001957 962 LLF 964 (991)
Q Consensus 962 L~f 964 (991)
|..
T Consensus 233 la~ 235 (330)
T 2pt7_A 233 LKS 235 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.56 E-value=1.4e-08 Score=114.18 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=52.1
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEc-CccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~in-G~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
|++|+.. .+|+++||+|+||||||||+|+|+|... ...+|+|.++ |.++. .+..+..||++|...+.++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 4455543 4799999999999999999999999764 1458999987 87764 466778999999988899999999
No 220
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.56 E-value=7.7e-09 Score=105.74 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=56.7
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-cccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
+++|++++|+|+||||||||+++|+|... .|.|.++|...... .-.+..+|++|... +..||+|.+.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 67999999999999999999999999832 57899999763211 12356799998765 678999999886643
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.54 E-value=4.1e-09 Score=108.99 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc---ccceEEEEecCCCCCCCCCHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
|+.+++|++++|+||||||||||+++|+|+++ .+.+++....... ....++|++|+...++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2556665543322 1345789999876666666655544
Q ss_pred H
Q 001957 249 F 249 (991)
Q Consensus 249 f 249 (991)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 222
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.53 E-value=1.9e-07 Score=102.78 Aligned_cols=118 Identities=17% Similarity=0.059 Sum_probs=81.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHHHHHH
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (991)
+++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~------------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA------------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH------------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh------------------HH-HHHH
Confidence 678887 99999999999999999999999998765 788888776542100 00 0000
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432210 0 0123345
Q ss_pred hHHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001957 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCLRQN 369 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEP-TsGLD~~t~~~i~~~L~~l 369 (991)
.+|.+++++...+++++|+||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5788899988889999999999 9999988887777776653
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.50 E-value=2.1e-08 Score=110.88 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=59.3
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-------cc--cceeeEEeccCCCCCCCCHHHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTIYESL 962 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-------tf--~r~~GY~eQ~Dih~p~~TVrEsL 962 (991)
.+|+++||+||||||||||+..|||.-.. ..|.|.++|.+.... .+ ++.+||++|.....|..||+|++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999999999998652 368999999875321 12 24589999999999999999999
Q ss_pred Hhh
Q 001957 963 LFS 965 (991)
Q Consensus 963 ~fs 965 (991)
.+.
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 224
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.49 E-value=2e-08 Score=103.01 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001957 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368 (991)
Q Consensus 329 rqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~ 368 (991)
.+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
No 225
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.49 E-value=1.2e-08 Score=119.80 Aligned_cols=167 Identities=12% Similarity=0.056 Sum_probs=92.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCC--CHHH
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM--TVRE 245 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG--~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (991)
.+++.+..+..++|.|++||||||+|++|.. .+..+ .|++.+.+.+.+..... .-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 4788889999999999999999999999875 33333 56676666654431111 00111221 2222
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCC
Q 001957 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (991)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (991)
+...+.+... ....++.+ + ...++..|+.+..+-. ......+|
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn--~~~~~~~s 270 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYN--EKIAEADR 270 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHH--HHHHHHhh
Confidence 2222221100 00111111 1 2356667765432210 00113578
Q ss_pred hhHhHHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---hhccCceEEEEEecCC
Q 001957 326 GGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCLRQN---IHINSGTAVISLLQPA 385 (991)
Q Consensus 326 GGqrqRv----------sia~~L~~~p~-vLllDEPTsGLD~~t~~~i~~~L~~l---~~~~~~t~ii~i~q~~ 385 (991)
|||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.++ .+..|.++|++++.|.
T Consensus 271 ~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 271 MMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp TTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9998763 24555667787 89999999988843 33444555444 3334557777766665
No 226
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=3.2e-08 Score=109.38 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=49.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCcc--cc-cceeeEEeccCC-------------
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQE--TF-ARISGYCEQNDI------------- 951 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~~--tf-~r~~GY~eQ~Di------------- 951 (991)
+.+|++++|+|+|||||||||++|+|... ..+|+|.+ +|...... .+ .+..||+.|..-
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45799999999999999999999999876 45899999 88875421 12 135799999863
Q ss_pred ---CCCCCCHHHHHHhhh
Q 001957 952 ---HSPFVTIYESLLFSA 966 (991)
Q Consensus 952 ---h~p~~TVrEsL~fsA 966 (991)
++|.+|| |++.|..
T Consensus 244 ~~~l~~~~~~-~n~~~~~ 260 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD 260 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT
T ss_pred HHHHHHhccc-ccCcCCC
Confidence 5899999 9998863
No 227
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.44 E-value=1.8e-07 Score=105.50 Aligned_cols=30 Identities=40% Similarity=0.587 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999988887654
No 228
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.43 E-value=5.5e-08 Score=112.08 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=59.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC-----------------Ce-------------------eeE
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----------------GY-------------------ITG 925 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~-----------------G~-------------------i~G 925 (991)
++|++|++.|.|| +++|+|+|||||||||++|++--.+ |. -+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4589999999999 9999999999999999998443210 01 168
Q ss_pred EEEEcCccCCccc----ccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 926 NITISGYPKKQET----FARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 926 ~I~inG~~~~~~t----f~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
.++|||.+.+... ....+++++|.+...- .+..+.+.|
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ 169 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGL 169 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHH
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHH
Confidence 8999999976322 2334799999886543 356555555
No 229
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.42 E-value=5.4e-08 Score=110.75 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=62.0
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCee-eEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i-~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.|++++ ++||.+++|+|||||||||||+.|+|... .. +|.|.+.|.|.. -.+++..+||+|..+.....+.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeeecCCCHHHHHHH
Confidence 466666 89999999999999999999999998753 12 588877777764 2456778999996443333455555
Q ss_pred HHhhhhccCCCCC
Q 001957 962 LLFSAWLRLSPEV 974 (991)
Q Consensus 962 L~fsA~LRlp~~v 974 (991)
|. +.||+.+++
T Consensus 202 l~--~~L~~~pd~ 212 (372)
T 2ewv_A 202 LR--AALREDPDV 212 (372)
T ss_dssp HH--HHTTSCCSE
T ss_pred HH--HHhhhCcCE
Confidence 44 556666666
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.40 E-value=1.3e-08 Score=105.17 Aligned_cols=73 Identities=23% Similarity=0.154 Sum_probs=51.3
Q ss_pred eeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC---cccccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---QETFARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 888 Sg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~---~~tf~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
|....+|++++|+||||||||||+++|+|... .+.++|.... .....+..||++|+...++.+|+.+.+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 34567999999999999999999999999842 3455554322 12235678999998888888887666554
Q ss_pred hh
Q 001957 965 SA 966 (991)
Q Consensus 965 sA 966 (991)
.+
T Consensus 75 ~~ 76 (205)
T 3tr0_A 75 HA 76 (205)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.39 E-value=4.5e-10 Score=122.62 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=55.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4799999999999 99999999999999999999874 6889998876532211 12345556542 234556
Q ss_pred CHHHHHHH
Q 001957 242 TVRETLAF 249 (991)
Q Consensus 242 TV~E~l~f 249 (991)
++.|++..
T Consensus 136 ~~iDeid~ 143 (278)
T 1iy2_A 136 VFIDEIDA 143 (278)
T ss_dssp EEEETHHH
T ss_pred EehhhhHh
Confidence 66666643
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.38 E-value=4.5e-08 Score=109.31 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=59.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccccceee--EEeccCCCCCCCCHHHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISG--YCEQNDIHSPFVTIYESL 962 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf~r~~G--Y~eQ~Dih~p~~TVrEsL 962 (991)
++|++++|+||||||||||+..|||.-. ...|+|.++|.+..+ ..+++..| |++|.....|..||+|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999854 246899999987532 12345556 999999999999999999
Q ss_pred Hhh
Q 001957 963 LFS 965 (991)
Q Consensus 963 ~fs 965 (991)
.+.
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.34 E-value=7.3e-10 Score=119.07 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=55.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccc---cceEEEEecCC-CCCCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5899999999999 99999999999999999999864 6889998876532111 12344555542 244556
Q ss_pred CHHHHHH
Q 001957 242 TVRETLA 248 (991)
Q Consensus 242 TV~E~l~ 248 (991)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6666664
No 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.34 E-value=1.1e-07 Score=105.03 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=49.2
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCc--cccc-ceeeEEeccCCCC-----CCCCHHH
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQ--ETFA-RISGYCEQNDIHS-----PFVTIYE 960 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~--~tf~-r~~GY~eQ~Dih~-----p~~TVrE 960 (991)
.+|++++|+|+||||||||+|+|+ ... ..+|+|.+ +|.+... ..+. +..||+.|+.-.. +.+|| |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 644 46899999 8977542 1222 2579999987543 78999 8
Q ss_pred HH--Hhh
Q 001957 961 SL--LFS 965 (991)
Q Consensus 961 sL--~fs 965 (991)
.| .|.
T Consensus 239 ~l~~~f~ 245 (302)
T 2yv5_A 239 EVRNYFR 245 (302)
T ss_dssp GGGGGCG
T ss_pred HHHHHHH
Confidence 87 554
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.34 E-value=8.4e-08 Score=101.51 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh-cCcCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La-G~~~~ 204 (991)
.+..+++|+.+++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 99754
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=1.6e-07 Score=103.70 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEE---cCccCCc--ccccceeeEEeccCCCCC----CCCHHH
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPKKQ--ETFARISGYCEQNDIHSP----FVTIYE 960 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~i---nG~~~~~--~tf~r~~GY~eQ~Dih~p----~~TVrE 960 (991)
.+.+|+.++|+|+||||||||+|+|+|... ..+|+|.+ +|..... ..+....||+.|..-..+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 456899999999999999999999999765 46899998 8876431 122222799999986655 7899 8
Q ss_pred HH
Q 001957 961 SL 962 (991)
Q Consensus 961 sL 962 (991)
.|
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 237
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.31 E-value=2.6e-07 Score=103.99 Aligned_cols=41 Identities=32% Similarity=0.435 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE-EECC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV-TYNG 216 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I-~~nG 216 (991)
|=+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 358899999999999999999999999876543 4544 4444
No 238
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.30 E-value=2.5e-07 Score=104.11 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
.+..++++..+.. ..++|+++ +.+.+|+.++|+|+|||||||||++|+|-.... .|.|.+.|.+.
T Consensus 45 ~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCH
T ss_pred CeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccH
Confidence 3566777755531 23579999 999999999999999999999999999987643 68999999651
Q ss_pred ----------CcccccceeeEEeccCCC-CCCCCHHHHHH
Q 001957 935 ----------KQETFARISGYCEQNDIH-SPFVTIYESLL 963 (991)
Q Consensus 935 ----------~~~tf~r~~GY~eQ~Dih-~p~~TVrEsL~ 963 (991)
....+.+.++||.|.|.. ...+++.+...
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 112367788999998742 23344444433
No 239
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=1.1e-07 Score=115.09 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=53.2
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC------cccccceeeEEeccCCCCCCCCHHHHHHhhhhc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK------QETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~------~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~L 968 (991)
+||+|+|||||||||++|+|.... ..+|.|+++|.+.. ...+++.+||++|+..+.+..||+|.+.+.+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998542 13799999998731 246788999999999999999999999986543
No 240
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.29 E-value=2.2e-08 Score=105.90 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-----------ccceEEEEecC
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----------PQRTAAYISQH 234 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-----------~~~~~~yv~Q~ 234 (991)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999998 999999998873211 13467888873
No 241
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.28 E-value=5.7e-08 Score=99.30 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=53.7
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
|++++|+|+||||||||++.|+++. .|.+.|+|.+.... +..||++|.+.+.+..||+|.+.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999732 46789998764321 24589998876667889999999876543
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.27 E-value=3.1e-07 Score=108.55 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=66.9
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHH
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEs 961 (991)
.+|++++..+++|..++|+|+|||||||||++|+|-... .+|.|+|+|.+--+..-...+++..|..+.....|.++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 468899999999999999999999999999999998753 478999999762111123456777777664446788888
Q ss_pred HHhhhhccCCC
Q 001957 962 LLFSAWLRLSP 972 (991)
Q Consensus 962 L~fsA~LRlp~ 972 (991)
|. +.||+.|
T Consensus 326 l~--~~LR~~P 334 (511)
T 2oap_1 326 LR--AALRQRP 334 (511)
T ss_dssp HH--TTGGGCC
T ss_pred HH--HhhccCC
Confidence 77 5677654
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.26 E-value=4e-08 Score=103.11 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=56.4
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhhcc--cc---CCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCC
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagR--kt---~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~T 957 (991)
|+.+- |.+++|++++|+||||||||||+..|+|. .. ++.-.|.|+++|.... -.+.++++.|.-...|. |
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-H
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 55544 79999999999999999999999999993 32 1234578999997521 12345677776555555 8
Q ss_pred HHHHHHhh
Q 001957 958 IYESLLFS 965 (991)
Q Consensus 958 VrEsL~fs 965 (991)
|+|++.|.
T Consensus 90 ~~~~~~~~ 97 (231)
T 4a74_A 90 VLKHIYVA 97 (231)
T ss_dssp HHHTEEEE
T ss_pred HhhcEEEE
Confidence 88877654
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.25 E-value=4.8e-07 Score=93.97 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=44.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCC--CCCCHHHHHHhh
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTIYESLLFS 965 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~--p~~TVrEsL~fs 965 (991)
.++|+++||+|+||||||||+++|+|.... .++|+.|++.+. +.+|++|.+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 378999999999999999999999987431 469999999875 678999987764
No 245
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=1.1e-07 Score=105.20 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=37.5
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
++.+|+|+++.+ +|+|+|||||||||+.|+|.... ..+| |.++|.+..+..-.+..+|+.|.+-..+.+||.
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchh
Confidence 457899999988 99999999999999999986321 3467 888887754322246689999998888899999
Q ss_pred HHHHhhhh
Q 001957 960 ESLLFSAW 967 (991)
Q Consensus 960 EsL~fsA~ 967 (991)
|++-|...
T Consensus 82 Dt~g~~~~ 89 (301)
T 2qnr_A 82 DTPGYGDA 89 (301)
T ss_dssp EEC-----
T ss_pred hhhhhhhh
Confidence 88877543
No 246
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.22 E-value=7.8e-08 Score=107.98 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=57.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccccceeeEEeccCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 953 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf~r~~GY~eQ~Dih~ 953 (991)
..+|++||..+++|+.++|+|+||||||||++.|+|... ...|+|.|.|..... ...++.+||+.|.....
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 357999999999999999999999999999999998754 235788888876431 12456789999987665
Q ss_pred C
Q 001957 954 P 954 (991)
Q Consensus 954 p 954 (991)
+
T Consensus 120 ~ 120 (337)
T 2qm8_A 120 I 120 (337)
T ss_dssp E
T ss_pred c
Confidence 4
No 247
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.19 E-value=2e-07 Score=108.67 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=45.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~ 935 (991)
..|+|||+.+++ +++||+|||||||||||++|+|-.. ..+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 349999999999 9999999999999999999999765 35789999998854
No 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.17 E-value=7.9e-08 Score=99.42 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=50.1
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc--ccceEEEEecCCCCCCCCCHHHHHHH
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAF 249 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (991)
.+..++|++++|+||||||||||+++|++.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 77889987764321 11245778887655556666666654
Q ss_pred H
Q 001957 250 S 250 (991)
Q Consensus 250 ~ 250 (991)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
No 249
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.16 E-value=6.9e-08 Score=102.16 Aligned_cols=37 Identities=32% Similarity=0.256 Sum_probs=22.9
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhh-ccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa-gRk 918 (991)
+-.++||+.+++|++++|+||||||||||++.|+ |..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999 874
No 250
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.16 E-value=1.1e-07 Score=101.23 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=54.0
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhh--cc-ccCCeeeEEEEEcCccCCc--ccccceeeEEeccCCCCCCCC
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 957 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLa--gR-kt~G~i~G~I~inG~~~~~--~tf~r~~GY~eQ~Dih~p~~T 957 (991)
|+++. |.+++|++++|+||||||||||+++|+ |. +.+ .|.+.+++..... ....+..||..|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 55544 699999999999999999999999999 65 432 4567777765321 122355789988766666666
Q ss_pred HHHHHHh
Q 001957 958 IYESLLF 964 (991)
Q Consensus 958 VrEsL~f 964 (991)
+.+.+..
T Consensus 96 ~~~~~~~ 102 (251)
T 2ehv_A 96 IVDGVSS 102 (251)
T ss_dssp EEC----
T ss_pred EEEcccc
Confidence 6665443
No 251
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.14 E-value=1.2e-06 Score=89.89 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHh
Q 001957 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370 (991)
Q Consensus 332 vsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~ 370 (991)
...|++++.+|.++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999988887654
No 252
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=3.4e-07 Score=94.13 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=43.2
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-ccccceeeEEecc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQN 949 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-~tf~r~~GY~eQ~ 949 (991)
|+.++|+|+||||||||+++|+|... .+| |.++|+...+ ...++.+||+.|.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 78899999999999999999999864 256 8888887643 3467889999997
No 253
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.12 E-value=1.9e-07 Score=96.52 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc--cccceeeEEeccCCCCCCCCHHHHHHhhh
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSA 966 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~--tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA 966 (991)
.++|++++|+|+||||||||+++|+|+. |.+.++|...... .-.+..||+.|+....+.+++.|.+....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 4689999999999999999999999875 6889998775321 11235699999888888889999887654
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.11 E-value=1e-06 Score=99.50 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhhhhcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLR 969 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~LR 969 (991)
..+||.+++++|||||||||||++|+|..... -.|.|...+.|.. -.+....+|+.|..+.....|..++|. +.||
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~~La--~aL~ 194 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSEALR--SALR 194 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHHHHH--HHTT
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHHHHH--HHhh
Confidence 67899999999999999999999999875310 1345555555543 234455689999988888899999765 6677
Q ss_pred CCCCC
Q 001957 970 LSPEV 974 (991)
Q Consensus 970 lp~~v 974 (991)
+.|++
T Consensus 195 ~~Pdv 199 (356)
T 3jvv_A 195 EDPDI 199 (356)
T ss_dssp SCCSE
T ss_pred hCcCE
Confidence 76664
No 255
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.10 E-value=2.3e-06 Score=96.88 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC-------C-CeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH---HHHH
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDPT-------L-KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR---ETLA 248 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~~-------~-~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 248 (991)
.++|+|+||||||||+|.|+|..... . ..+|.|.++|.++. ...+.|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986411 0 23799999986542 123445554422 11121 1111
Q ss_pred HHHHhcCCCchhhhhHHHHHHHHHcCCCCCCChHHHHHHHHhhhhhhhHHHHHHHHHcCCcccccccccCcccCCCChhH
Q 001957 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (991)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (991)
........-.-.+ . .+.+.. .......+..+++.+++.+..--.|+|. ...+|+|+
T Consensus 254 ~~~~aD~il~VvD-------------~---s~~~~~-------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S---TFSENL-------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEE-------------T---TSCHHH-------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEE-------------C---CCCcch-------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 1100000000000 0 000000 0001112345677777765443344443 34578888
Q ss_pred hHHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhh
Q 001957 329 KKRVTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371 (991)
Q Consensus 329 rqRvsia----~~L-~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~ 371 (991)
++|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 9988887 554 334444 89999999999999999887654
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=1.8e-07 Score=107.72 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=52.1
Q ss_pred ceeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc--CCeeeEEEEEcCc
Q 001957 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGNITISGY 932 (991)
Q Consensus 855 ~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt--~G~i~G~I~inG~ 932 (991)
.+.++||++.+. ++.+|+|||+.+ ||+|+|||||||||+.|+|... .| .|.+.+++.
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~~~ 69 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHRIK 69 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC----
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccCCc
Confidence 367788876552 245799999987 9999999999999999999864 33 233333332
Q ss_pred cCCcccccceeeEEeccCCCCCCCCHHHHHHhhhh
Q 001957 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW 967 (991)
Q Consensus 933 ~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fsA~ 967 (991)
+ ..-.+.+||+.|.+...+.+||.+++-|...
T Consensus 70 ~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 70 K---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp ----CCEEEEEECC------CEEEEEEECC-----
T ss_pred c---ceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 2 2234678999999888889999998887654
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.06 E-value=1.5e-06 Score=87.62 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=28.2
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
|||+.+++|++++|+|+||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999765
No 258
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.06 E-value=3.3e-07 Score=105.61 Aligned_cols=82 Identities=17% Similarity=0.041 Sum_probs=60.0
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-------cccccceeeEEe------
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-------QETFARISGYCE------ 947 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-------~~tf~r~~GY~e------ 947 (991)
+.+|+++ . .+||.+++|+|||||||||||++|+|.... .+|+|.+.|.|.. |..+.+.+||..
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4568888 3 489999999999999999999999997642 3689999998853 223445566654
Q ss_pred ---ccC-CC-CCC----CCHHHHHHhhh
Q 001957 948 ---QND-IH-SPF----VTIYESLLFSA 966 (991)
Q Consensus 948 ---Q~D-ih-~p~----~TVrEsL~fsA 966 (991)
|+. +. .+. .|+++++.++.
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 643 21 333 69999998753
No 259
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.03 E-value=7.1e-06 Score=95.90 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=29.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567777777777 8899999999999999999864
No 260
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.02 E-value=2e-06 Score=87.02 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=33.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7899999999 99999999999999999999987654
No 261
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.99 E-value=2.1e-07 Score=98.42 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=40.0
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-----------cccccceeeEEeccC
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-----------QETFARISGYCEQND 950 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-----------~~tf~r~~GY~eQ~D 950 (991)
..|.+ +++||+|||||||||||++|+|-.. ..+|+|.++|.+.. ....++.+|||+|..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 92 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDT 92 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEEE
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEee
Confidence 44556 7899999999999999999999765 34688899887752 123467789999964
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.97 E-value=1e-06 Score=97.97 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=62.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCcc-------c-----cceEEEE-ec
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------P-----QRTAAYI-SQ 233 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~-------~-----~~~~~yv-~Q 233 (991)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998876 789999887764311 1 3457888 67
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001957 234 HDNHIGEMTVRETLAFS 250 (991)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (991)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555655677776654
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.95 E-value=2.5e-06 Score=87.85 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 173 ~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
+++++|++++|+||||||||||+++|++++.++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998654
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.95 E-value=4.4e-07 Score=102.30 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=57.9
Q ss_pred ccCc-eeeeeCCeEEEEeeccCCChhhhhhhhhccc----cCCeeeEE-EEEcCccCCcccc-cceeeEEeccCCCCCCC
Q 001957 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGN-ITISGYPKKQETF-ARISGYCEQNDIHSPFV 956 (991)
Q Consensus 884 L~~V-Sg~~~pG~ltALmG~SGAGKTTLldvLagRk----t~G~i~G~-I~inG~~~~~~tf-~r~~GY~eQ~Dih~p~~ 956 (991)
|+++ .|.+++|++++|+|+||||||||+..|++-. +.|...|. |+|+|... | .+.++|+.|..-..+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----~~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----FRPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----CCHHHHHHHHHTTTCCHH-
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----CCHHHHHHHHHHcCCCHH-
Confidence 6665 5899999999999999999999999999864 23333577 99999763 3 3456788876554444
Q ss_pred CHHHHHHhh
Q 001957 957 TIYESLLFS 965 (991)
Q Consensus 957 TVrEsL~fs 965 (991)
||+|++.|.
T Consensus 195 ~v~~ni~~~ 203 (349)
T 1pzn_A 195 EVLKHIYVA 203 (349)
T ss_dssp HHGGGEEEE
T ss_pred HHhhCEEEE
Confidence 777776654
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.94 E-value=4.1e-07 Score=97.17 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=55.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhh---ccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHh
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLa---gRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
++++++|+|+||||||||++.|+ |-.. ...|+|.++|.+.. ....+..+++.|+....|..||.|.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46899999999999999999999 7643 55789998887643 3345566777788778889999999976
No 266
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.93 E-value=7.2e-06 Score=91.63 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=34.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455788888889999999999999999999998887653
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.90 E-value=3e-06 Score=88.03 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=38.2
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccC-CeeeEEEEEcCccCC
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKK 935 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~-G~i~G~I~inG~~~~ 935 (991)
.++|+++||+|+||||||||+++|+|.-.. |...|.|.++|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 589999999999999999999999998542 445788888888765
No 268
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=1.8e-06 Score=87.81 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.9
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc---cccceeeEEeccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND 950 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~---tf~r~~GY~eQ~D 950 (991)
.++|+||||||||||+++|+|... |.++|++.... ...+.+||+.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC
Confidence 579999999999999999999863 44555542111 3467789999975
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.89 E-value=2.1e-06 Score=87.53 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999998753
No 270
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.88 E-value=1.4e-06 Score=87.97 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=41.6
Q ss_pred eEEEEeeccCCChhhhhhhhhcccc-CCeeeEEEEEcCccCC------ccccc-ceee----EEeccCCCC
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPKK------QETFA-RISG----YCEQNDIHS 953 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt-~G~i~G~I~inG~~~~------~~tf~-r~~G----Y~eQ~Dih~ 953 (991)
+.+||+|+||||||||++.|+|.-. .|+-.|.|+++|++.. .++++ +.+| |+.|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 4799999999999999999998853 3566899999999832 23555 4678 788866543
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.87 E-value=7.7e-07 Score=97.70 Aligned_cols=38 Identities=24% Similarity=0.173 Sum_probs=35.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
..|++|++.++||++++|+|+||||||||+..|||...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999854
No 272
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.87 E-value=1e-05 Score=100.45 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=59.7
Q ss_pred cCCCChhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEE
Q 001957 321 IRGISGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (991)
Q Consensus 321 ~~~LSGGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vi 396 (991)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~~ 263 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDAP 263 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSCC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCCC
Confidence 34589999999999999999999999999996 9998887777777765432 345677777788777878887533
No 273
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=1.5e-06 Score=93.43 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCeeeEEE--------ECCeeCCCcc----ccceEEEE
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA---GKLDPTLKVSGTVT--------YNGHDMDEFV----PQRTAAYI 231 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~La---G~~~~~~~~~G~I~--------~nG~~~~~~~----~~~~~~yv 231 (991)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 988777 89998 8998874321 12457788
Q ss_pred ecC
Q 001957 232 SQH 234 (991)
Q Consensus 232 ~Q~ 234 (991)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
No 274
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.81 E-value=3.4e-06 Score=93.97 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=27.6
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
++++..|.|| +++|+|+|||||||||++|.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 3578888999 99999999999999999998
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=5.5e-06 Score=85.38 Aligned_cols=38 Identities=29% Similarity=0.082 Sum_probs=25.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999876
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.79 E-value=8.3e-07 Score=91.69 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEE--EECCeeCC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV--TYNGHDMD 220 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I--~~nG~~~~ 220 (991)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999986 3 6776 88887654
No 277
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.73 E-value=1.2e-06 Score=97.54 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=54.3
Q ss_pred eEEEEeeccCCChhhhhhhhhccccC---C---eeeEEEEEcCccCCc------------------ccccceeeEE---e
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRKTG---G---YITGNITISGYPKKQ------------------ETFARISGYC---E 947 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRkt~---G---~i~G~I~inG~~~~~------------------~tf~r~~GY~---e 947 (991)
.+++|.|+|||||||||+.|+|...+ + .-.|+|.|+|.+... ..|.+.++|+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 0 146889999988532 3466778888 6
Q ss_pred ccCCCCCCCCHHHHHHhh
Q 001957 948 QNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 948 Q~Dih~p~~TVrEsL~fs 965 (991)
|..-..+..||.|++.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 776667788999887764
No 278
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.71 E-value=7.3e-06 Score=84.44 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=33.0
Q ss_pred eeecceEEEeeCchhhhhccccccceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 856 l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.++|+++.+.. ..|++ +.+.+|..++|+|+||||||||++.|+|..
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567888877631 23666 678999999999999999999999999976
No 279
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.71 E-value=9.2e-07 Score=96.32 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=61.5
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc---cccceeeEEeccC-CCCCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---TFARISGYCEQND-IHSPFV 956 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~---tf~r~~GY~eQ~D-ih~p~~ 956 (991)
..++++++..+++| ++|.||+|||||||+++|||.... |.|.|+|.+.... ...+.++|+.|.- .+.|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45789999999999 999999999999999999997542 6899999875321 2345677888764 456777
Q ss_pred CHHHHHHhhhh
Q 001957 957 TIYESLLFSAW 967 (991)
Q Consensus 957 TVrEsL~fsA~ 967 (991)
++.+.+.+-+.
T Consensus 107 ~~~Deid~~~~ 117 (274)
T 2x8a_A 107 IFFDEVDALCP 117 (274)
T ss_dssp EEEETCTTTCC
T ss_pred Eeeehhhhhhc
Confidence 77666655433
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=1e-05 Score=81.97 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=30.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~n 215 (991)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 35666543
No 281
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.68 E-value=9.4e-06 Score=83.78 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=22.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+||.++||+||||||||||+++|+|..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999853
No 282
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.68 E-value=9.3e-06 Score=85.80 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc------ccc-------cceeeEEeccCCC
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETF-------ARISGYCEQNDIH 952 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~------~tf-------~r~~GY~eQ~Dih 952 (991)
+-++..++|.+++|+|+||||||||++.|+|. .|+|.++|.|... ... .+..||+.|...+
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l 85 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVT 85 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHH
Confidence 34455689999999999999999999999998 3678888887421 111 2346788876544
Q ss_pred CC
Q 001957 953 SP 954 (991)
Q Consensus 953 ~p 954 (991)
.+
T Consensus 86 ~~ 87 (230)
T 2vp4_A 86 LT 87 (230)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 283
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.67 E-value=2.3e-05 Score=90.15 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=47.0
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
-++|+..+++|..++|+|++||||||||++|+|.+. .|+++|.. |....+|+++|.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~ 203 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecC
Confidence 468999999999999999999999999999998754 45677643 4556678888765
No 284
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.66 E-value=4.2e-06 Score=89.79 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=35.5
Q ss_pred ceeecce-EEEeeCchhhhhccccccceeeccCceeeeeC---CeEEEEeeccCCChhhhhhhhhccc
Q 001957 855 SLTFDEV-VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 855 ~l~f~dv-~y~v~~~~~~k~~g~~~~~~~lL~~VSg~~~p---G~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+.++|+ ++.++ +...+|+|||+.+++ |+.++|+|+|||||||+.+.||++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778898 77651 123579999999999 9999999999999999999999864
No 285
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.66 E-value=2e-06 Score=97.50 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=53.4
Q ss_pred ccCceeeeeC--CeEEEEeeccCCChhhhhhhhhccccCCeee----EEEEEc----CccC--CcccccceeeEEeccCC
Q 001957 884 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GNITIS----GYPK--KQETFARISGYCEQNDI 951 (991)
Q Consensus 884 L~~VSg~~~p--G~ltALmG~SGAGKTTLldvLagRkt~G~i~----G~I~in----G~~~--~~~tf~r~~GY~eQ~Di 951 (991)
.+.|+..+++ |+.+||+|+||||||||+++|+|... ... |.|+++ |.+. ....+ +.++|+.|...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 5678999999 99999999999999999999999864 345 777764 4332 12334 44788877543
Q ss_pred CCCCCCHHHHHH
Q 001957 952 HSPFVTIYESLL 963 (991)
Q Consensus 952 h~p~~TVrEsL~ 963 (991)
. ...|++|+|.
T Consensus 235 ~-~~~t~~~nl~ 245 (365)
T 1lw7_A 235 D-YAVRHSHKIA 245 (365)
T ss_dssp H-HHHHHCSSEE
T ss_pred H-HHHhccCCEE
Confidence 2 2345555443
No 286
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.66 E-value=4.8e-07 Score=106.41 Aligned_cols=49 Identities=37% Similarity=0.570 Sum_probs=42.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 221 (991)
.+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4789999999999 99999999999999999999864 5788999877643
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.65 E-value=2e-06 Score=88.81 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=43.1
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEE--EEcCccCCcccccceeeEEec
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNI--TISGYPKKQETFARISGYCEQ 948 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I--~inG~~~~~~tf~r~~GY~eQ 948 (991)
++.++...++|++++|+|+||||||||++.||++-. ..|.+ +++|..... ...+..||.+|
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~-~~~~~~~~~~~ 77 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRH-GLNRDLSFKAE 77 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTT-TTTTTCCSSHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhh-HhhcccCcChH
Confidence 445556668999999999999999999999999853 13444 888876532 22333455544
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.64 E-value=1.6e-05 Score=81.74 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|.+++|+|+||||||||++.|++.-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999999986
No 289
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.60 E-value=2.3e-06 Score=95.83 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=59.2
Q ss_pred eeccCceeeeeCC-------eEEEEeeccCCChhhhhhhhhccccC--CeeeEEEEEcCccCCc--cc-ccceeeEEecc
Q 001957 882 VLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGYPKKQ--ET-FARISGYCEQN 949 (991)
Q Consensus 882 ~lL~~VSg~~~pG-------~ltALmG~SGAGKTTLldvLagRkt~--G~i~G~I~inG~~~~~--~t-f~r~~GY~eQ~ 949 (991)
.++++++..+++| ..++|.||+|+|||||+++|||.... -+.+|.+..+|..... .. -++.++|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4577888888776 78999999999999999999997511 1356666665544221 11 24578999998
Q ss_pred CCCCCCCCHHHHHHh
Q 001957 950 DIHSPFVTIYESLLF 964 (991)
Q Consensus 950 Dih~p~~TVrEsL~f 964 (991)
|.+.+ |+.|.|..
T Consensus 112 ~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 112 HRLNK--AVEELLYS 124 (334)
T ss_dssp GGCCH--HHHHHHHH
T ss_pred hhcCH--HHHHHHHH
Confidence 87776 89999954
No 290
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.60 E-value=4.8e-06 Score=89.35 Aligned_cols=39 Identities=41% Similarity=0.490 Sum_probs=36.3
Q ss_pred ceeeeceEEEEeC---CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 165 LTILKDVSGVIKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 165 ~~iL~~vs~~i~~---Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+|+|+|+.|++ |+.++|+|+|||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999 99999999999999999999999754
No 291
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.58 E-value=6.6e-06 Score=88.31 Aligned_cols=63 Identities=21% Similarity=0.095 Sum_probs=47.2
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhh---ccccCCeeeEEEE--------EcCccCC----cccccceeeEEe
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNIT--------ISGYPKK----QETFARISGYCE 947 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa---gRkt~G~i~G~I~--------inG~~~~----~~tf~r~~GY~e 947 (991)
++++.+ ++|..+||+|+|||||||++++|| |-.. +.+|+|. .+|.+.. ...+++.+||+.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 344444 789999999999999999999999 5543 4678998 8888763 234677889998
Q ss_pred ccC
Q 001957 948 QND 950 (991)
Q Consensus 948 Q~D 950 (991)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 865
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.56 E-value=0.00013 Score=81.00 Aligned_cols=38 Identities=29% Similarity=0.306 Sum_probs=33.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 164 ~~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
...-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999888754
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=5.7e-06 Score=83.10 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=46.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcc-cc-cceeeEEeccCCCCCCCCHHHHHHh
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TF-ARISGYCEQNDIHSPFVTIYESLLF 964 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~-tf-~r~~GY~eQ~Dih~p~~TVrEsL~f 964 (991)
.+|.+++|+|+||||||||++.|+++. |.+.++|...... .. ++..|+..|.....+.+++.|.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 74 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 74 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHH
Confidence 579999999999999999999999874 5678887664321 01 1235777665444555667776543
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.53 E-value=2.1e-05 Score=83.00 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=34.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
..++|++++|.|+||||||||+++|+|. .|+|.+++.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4478999999999999999999999997 47788887764
No 295
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00026 Score=79.81 Aligned_cols=57 Identities=7% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCCChhHhHHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHhhccCceEEEEE
Q 001957 322 RGISGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381 (991)
Q Consensus 322 ~~LSGGqrqRvsia~~L~~~p~vLllD-EPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i 381 (991)
..+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..+|+..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 468999998876 55556788889999 99999999988888888876542 45555554
No 296
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.51 E-value=3.8e-05 Score=77.50 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=29.1
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
++++..|.|| +++|+|+||||||||+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 6889999999 999999999999999999976
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=3e-05 Score=78.58 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=29.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+|++++|+||||||||||++.|++.... ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999987532 1345554433
No 298
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.49 E-value=5.1e-05 Score=74.67 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=44.7
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE--EEEEcCccCCcccccceeeEEeccCCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG--NITISGYPKKQETFARISGYCEQNDIH 952 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G--~I~inG~~~~~~tf~r~~GY~eQ~Dih 952 (991)
...|+++ +|+.++|+|++|+|||||+++|++.... .| .+++++.......|......+==+|++
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCCGGGGGCSEEEEESTT
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHHHHHhCCCEEEEeCcc
Confidence 4457776 8999999999999999999999997542 35 788888775443443333333334443
No 299
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=4.6e-05 Score=79.09 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=2.8e-05 Score=79.99 Aligned_cols=37 Identities=30% Similarity=0.190 Sum_probs=24.8
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
-.++|||+.++||..++|+|+|||||||+...||++-
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999999999999999765
No 301
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=3.3e-05 Score=79.69 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999875
No 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=3.3e-05 Score=78.64 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.4
Q ss_pred CeEEEEeeccCCChhhhhhhhhcccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt 919 (991)
|.+++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999998753
No 303
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.44 E-value=0.00011 Score=82.95 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCeeeEEE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVT 213 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG--~~~~~~~~~G~I~ 213 (991)
..+|+++++.++ .++|+|++||||||||+.|+| +++.. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 458999999998 899999999999999999999 44554 55444
No 304
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.43 E-value=2.4e-05 Score=80.80 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=34.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4688999999999999999999999998765 6777776544
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=3.6e-05 Score=77.16 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 5567776544
No 306
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.42 E-value=1.9e-05 Score=89.66 Aligned_cols=44 Identities=36% Similarity=0.321 Sum_probs=39.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEE
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~ 214 (991)
..+|+++|+.+++|++++|+||||||||||+++|+|.+ .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999863 566654
No 307
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.42 E-value=1.3e-05 Score=90.92 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=46.3
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di 951 (991)
..+|++++..+++|++++|.||||||||||+++|+|.. .|.+..-.-|. +.+....|+++|..+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhH
Confidence 46799999999999999999999999999999999853 34554412221 222334566666543
No 308
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.42 E-value=0.00062 Score=74.20 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999864
No 309
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.41 E-value=5.3e-05 Score=86.31 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=60.1
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc----------cCCeeeEEEEEcCccCCc--ccc--ccee---eEEeccCCC
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGNITISGYPKKQ--ETF--ARIS---GYCEQNDIH 952 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk----------t~G~i~G~I~inG~~~~~--~tf--~r~~---GY~eQ~Dih 952 (991)
.+++|..++|+|++|||||||++.|+|.+ |.....|.+.++|..... +.| .+.+ .++.+.--+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999954 334578999999843210 011 2222 477777777
Q ss_pred CCCCCHHHHH--HhhhhccC
Q 001957 953 SPFVTIYESL--LFSAWLRL 970 (991)
Q Consensus 953 ~p~~TVrEsL--~fsA~LRl 970 (991)
.+..|..|.| .|-+.+|.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~ 115 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA 115 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 7888888888 88888884
No 310
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.001 Score=74.62 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=28.7
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 168 L~~vs-~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|+.+- +-+++|+++.|.||||||||||+..|+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999998874
No 311
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.41 E-value=2e-05 Score=97.26 Aligned_cols=69 Identities=16% Similarity=-0.016 Sum_probs=46.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+++|||+. |++++|+|||||||||||++|+|-...+ ..|. ..+. -++.+||+.| .++.+|++|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~------~vpa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGS------FVPA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTC------CBSS--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCc------eeeh--hccceeeHHH---hhccCCHHH
Confidence 5679999998 9999999999999999999999853210 0122 1121 1346789988 567789999
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
+|.+
T Consensus 631 ~l~~ 634 (765)
T 1ewq_A 631 DLAG 634 (765)
T ss_dssp ----
T ss_pred HHHh
Confidence 8865
No 312
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.39 E-value=2.5e-05 Score=96.78 Aligned_cols=71 Identities=17% Similarity=0.046 Sum_probs=46.4
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHH
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrE 960 (991)
..+++||++. ++|++++|+|||||||||||++|+|-...+. .|...++. ...+|++.| .++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4579999999 9999999999999999999999998532111 23232222 235678776 466778888
Q ss_pred HHHh
Q 001957 961 SLLF 964 (991)
Q Consensus 961 sL~f 964 (991)
++..
T Consensus 662 ~l~~ 665 (800)
T 1wb9_A 662 DLAS 665 (800)
T ss_dssp ----
T ss_pred HHHh
Confidence 7754
No 313
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=4.9e-05 Score=80.07 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=47.6
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhhcccc-----CCeeeEEEEEcCccC-Ccc---cccceeeEEec
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-----GGYITGNITISGYPK-KQE---TFARISGYCEQ 948 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagRkt-----~G~i~G~I~inG~~~-~~~---tf~r~~GY~eQ 948 (991)
|+.+- |.+++|++++|+|+||||||||+..|++... +|.-.|.++|++... ... ...+..||.+|
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 55544 7899999999999999999999999999421 223468999999873 211 13344677765
No 314
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.37 E-value=4.8e-05 Score=79.30 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=38.8
Q ss_pred eeccCcee-eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg-~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..|+++++ .+++|++++|+|+||||||||+..|++... ...|.+.+.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~ 60 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTE 60 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcc
Confidence 34889884 999999999999999999999999997643 112455554444
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.36 E-value=0.00011 Score=75.97 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++|++++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999999999863
No 316
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=2.3e-05 Score=95.74 Aligned_cols=48 Identities=31% Similarity=0.250 Sum_probs=34.6
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCC
Q 001957 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221 (991)
Q Consensus 172 s~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~ 221 (991)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 3457889999999999999999999999765431 126777 56655443
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=4e-05 Score=85.22 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=59.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc-------ccc-----cceeeEE-eccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETF-----ARISGYC-EQND 950 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~-------~tf-----~r~~GY~-eQ~D 950 (991)
++++++..++|.+++++|++|+||||++..||+.-. ...|.|.+.+....+ ..+ +..++|+ .|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 368888899999999999999999999999998753 123577776655321 123 3456888 6776
Q ss_pred CCCCCCCHHHHHHhh
Q 001957 951 IHSPFVTIYESLLFS 965 (991)
Q Consensus 951 ih~p~~TVrEsL~fs 965 (991)
...|..+++++|...
T Consensus 173 ~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 173 NADPASVVFDAIKKA 187 (320)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 667778899998763
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.30 E-value=7.2e-05 Score=77.60 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
++|.+++|+||||||||||++.|+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998864
No 319
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.28 E-value=5.1e-05 Score=90.27 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=37.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee-EEE-ECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG-TVT-YNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G-~I~-~nG~~~ 219 (991)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 47899999999999999999999999999876 65 674 887654
No 320
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.25 E-value=0.00011 Score=85.47 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=58.5
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCeEEE-ecCCeEEEecCHH--HHHHH
Q 001957 340 GPALALFMDEISTGLDS-STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPRE--LVLEF 415 (991)
Q Consensus 340 ~~p~vLllDEPTsGLD~-~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~vil-L~~G~iv~~G~~~--~~~~~ 415 (991)
.++++||+||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..++++ +..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 37899999999887764 567778888877643 5677777776665554444444443 4567777766553 23322
Q ss_pred ----HHhcCCCCCCCCCHHHHHHHhc
Q 001957 416 ----FASMGFRCPKRKGVADFLQEVT 437 (991)
Q Consensus 416 ----f~~~G~~~p~~~~~adfl~~v~ 437 (991)
.+..|...|+ ...+++...+
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~ 295 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENV 295 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhc
Confidence 3334554443 4456655443
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.24 E-value=2.2e-05 Score=87.15 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+++|+||||||||||+++|++++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999863
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.23 E-value=0.00017 Score=74.45 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|.+++|+|+||||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999874
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.0015 Score=72.57 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=28.5
Q ss_pred eeceE-EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 168 L~~vs-~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 44432 56899999999999999999999988864
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.19 E-value=0.00011 Score=75.80 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
-+|.+++|+||||||||||++.|+++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999999874
No 325
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.17 E-value=0.0017 Score=73.15 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 177 ~Ge--~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 345 89999999999999999999987653
No 326
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=8.8e-05 Score=76.83 Aligned_cols=47 Identities=32% Similarity=0.380 Sum_probs=39.2
Q ss_pred eccCce-eeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 883 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 883 lL~~VS-g~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
-|+++. |.+++|++++|.|+||||||||+..||+ +.+ .+-+++++.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~ 55 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG 55 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC
Confidence 378877 5999999999999999999999999999 433 3567787765
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00013 Score=72.69 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 328
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.12 E-value=0.00025 Score=69.74 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=25.2
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
++.++.+.+| +++|+|||||||||||++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999873
No 329
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.0016 Score=69.44 Aligned_cols=35 Identities=40% Similarity=0.731 Sum_probs=25.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666665 89999999999999999999764
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.09 E-value=0.00017 Score=78.94 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=45.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHHHHHHhh
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFS 965 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVrEsL~fs 965 (991)
+++.++||.|+||||||||.+.|++.-.. +| . . .+.+.+|.|+|.|.+. |+++++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~----~--~~~~~iv~~D~f~~~~-~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G----G--EKSIGYASIDDFYLTH-EDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G----G--GSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C----C--CceEEEeccccccCCh-HHHHHHhcc
Confidence 57889999999999999999999987642 11 1 1 3455667999999865 899999885
No 331
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00013 Score=82.22 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=31.2
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
.+++++..|.|| +++|+|+|||||||||++|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 378999999999 999999999999999999986
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.09 E-value=0.00037 Score=69.60 Aligned_cols=42 Identities=33% Similarity=0.631 Sum_probs=33.6
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
++|.-++|+|.+|+|||||++.|+|.+. ..+..+.+.++|.+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 5788999999999999999999999752 23467889998865
No 333
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.07 E-value=0.00035 Score=76.88 Aligned_cols=52 Identities=35% Similarity=0.443 Sum_probs=38.9
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccCC
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Di 951 (991)
.+++| .+||||++|||||||+|.|.|.+.. + +++ +.+.|..++.|+++|.+.
T Consensus 5 ~~r~~-~VaIvG~~nvGKSTLln~L~g~~~~--i-----~s~--~~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 5 KSYCG-FIAIVGRPNVGKSTLLNKLLGQKIS--I-----TSR--KAQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp CCEEE-EEEEECSSSSSHHHHHHHHHTCSEE--E-----CCC--CSSCCSSCEEEEEEETTE
T ss_pred cccCC-EEEEECCCCCCHHHHHHHHHCCCcc--c-----cCC--CCCcceeeEEEEEEECCe
Confidence 35666 7999999999999999999998631 1 122 234566788899988764
No 334
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.06 E-value=0.00017 Score=81.63 Aligned_cols=31 Identities=35% Similarity=0.700 Sum_probs=28.6
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
+++++..|.+| +++|.||||||||||+|+|+
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66788899999 89999999999999999987
No 335
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.05 E-value=0.00032 Score=71.34 Aligned_cols=39 Identities=28% Similarity=0.504 Sum_probs=32.6
Q ss_pred EEEEeeccCCChhhhhhhhhccccC-------C--eeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTG-------G--YITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~-------G--~i~G~I~inG~~~ 934 (991)
.++|+|++|||||||++.|+|.... | +.+|.|.++|.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999997632 2 2589999999764
No 336
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.03 E-value=0.0019 Score=70.76 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++++.-++|.||||+|||||+++|++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56788999999999999999999998753
No 337
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.02 E-value=0.00013 Score=91.40 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=34.9
Q ss_pred ceeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 880 ~~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
+..+++|||+.+.+|++++|+|||||||||||+.+++-
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45789999999999999999999999999999999754
No 338
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.02 E-value=0.00038 Score=71.10 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=32.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc-------cCC--eeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-------TGG--YITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-------t~G--~i~G~I~inG~~~ 934 (991)
-++|+|++|||||||++.|+|.. |.| ..+|.|.++|.+.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 57999999999999999999974 323 3479999999753
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.01 E-value=5.6e-05 Score=84.81 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=41.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
..+++++++.+++|.+++|+|+||+|||||++.|++.+.+. .|+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 35778888888999999999999999999999999987654 5666555444
No 340
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.97 E-value=0.0016 Score=74.90 Aligned_cols=37 Identities=27% Similarity=0.131 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988654 45555433
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.00013 Score=77.73 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=56.0
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccccceeeEEeccC-CCCCCCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQND-IHSPFVT 957 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf~r~~GY~eQ~D-ih~p~~T 957 (991)
.++++++..+++| ++|.||||+|||||++.|++... .|.|.++|..... ....+.++++.|.- .+.|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4588999999999 89999999999999999998764 5688898866321 11233456666653 3567777
Q ss_pred HHHHHHh
Q 001957 958 IYESLLF 964 (991)
Q Consensus 958 VrEsL~f 964 (991)
+.+.+..
T Consensus 113 ~~Deid~ 119 (254)
T 1ixz_A 113 FIDEIDA 119 (254)
T ss_dssp EEETHHH
T ss_pred Eehhhhh
Confidence 7666643
No 342
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.00041 Score=77.92 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.00014 Score=78.81 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=56.8
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCc---ccccceeeEEeccC-CCCCCCC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQND-IHSPFVT 957 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~---~tf~r~~GY~eQ~D-ih~p~~T 957 (991)
.++++++..+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.++++.|.- .+.|.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5688999999999 88999999999999999998764 5788899876321 11233456666654 3567777
Q ss_pred HHHHHHh
Q 001957 958 IYESLLF 964 (991)
Q Consensus 958 VrEsL~f 964 (991)
+.+.+..
T Consensus 137 ~iDeid~ 143 (278)
T 1iy2_A 137 FIDEIDA 143 (278)
T ss_dssp EEETHHH
T ss_pred ehhhhHh
Confidence 7766643
No 344
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.92 E-value=0.00019 Score=80.70 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~ 220 (991)
+++..++|+|+||||||||+|.|+|.+.+. .|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecCC
Confidence 467899999999999999999999987765 677777665543
No 345
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.85 E-value=0.00086 Score=77.75 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC------C---CCeeeEEEECCeeCCCc---cccceEEEEecCCCCCCCCCHHHH
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDP------T---LKVSGTVTYNGHDMDEF---VPQRTAAYISQHDNHIGEMTVRET 246 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~------~---~~~~G~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (991)
-.++|+|+||+|||||+|.|+|.... . -..+|.+.++|+++.-. ..++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998530 0 01379999999865211 112233343343333444444444
Q ss_pred HHH
Q 001957 247 LAF 249 (991)
Q Consensus 247 l~f 249 (991)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 346
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.85 E-value=0.0001 Score=77.98 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=42.0
Q ss_pred hhHhHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchhHhhcCe
Q 001957 326 GGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (991)
Q Consensus 326 GGqrqRvsia~~L~~~p~vLllDEPTs-GLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~~~lfD~ 394 (991)
.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... ...+++++-+.|.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 35544442 33578889999999976 7887766556665554332 2346677777776665566553
No 347
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00033 Score=83.00 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=29.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
.+++++..|.|| +++|+|+|||||||||+.|
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHH
Confidence 478899999999 9999999999999999998
No 348
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.84 E-value=0.00034 Score=75.87 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=30.9
Q ss_pred ccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccC
Q 001957 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920 (991)
Q Consensus 884 L~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~ 920 (991)
|+.+-+.+.+|++++|+|+||||||||+..|++-...
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4444457899999999999999999999999985443
No 349
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.84 E-value=0.00025 Score=70.62 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
.|.+++|+|+||||||||.+.||++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999753
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.0002 Score=72.09 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee--EEEECCeeC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~nG~~~ 219 (991)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998743 24 555665444
No 351
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.83 E-value=0.0078 Score=67.67 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-+++|+++.|.||||+|||||...++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998887653
No 352
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.00041 Score=73.17 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 167 ILKDVSGVIK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 167 iL~~vs~~i~---~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
=|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3777888877 9999999999999999999999998764
No 353
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.80 E-value=0.0013 Score=65.55 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 354
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.80 E-value=0.00031 Score=71.87 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=41.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
.+|+++|...+++. ++|+|++|+|||||++.|.+.+ |.|...+.+.++|..
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 46888888888885 7899999999999999999864 445567888888754
No 355
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00079 Score=83.95 Aligned_cols=31 Identities=42% Similarity=0.625 Sum_probs=28.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
.+++|+.++|.||||+|||||+++|++.+..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999998754
No 356
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.79 E-value=0.0025 Score=69.59 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987543
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.78 E-value=0.00018 Score=79.80 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=40.8
Q ss_pred eeeccCceeeeeCCe------EEEEeeccCCChhhhhhhhhcccc---CCeeeEEEEEcCccCC
Q 001957 881 LVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKK 935 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~------ltALmG~SGAGKTTLldvLagRkt---~G~i~G~I~inG~~~~ 935 (991)
.+.|++++..|..+. ++||.|+||||||||+++|++.-. .+...+-|..+|+...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 455777777776665 999999999999999999988743 1223455777776654
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.78 E-value=0.00053 Score=67.32 Aligned_cols=30 Identities=27% Similarity=0.663 Sum_probs=25.0
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
++.+..|.|| +++|.||+|||||||||.|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566777 99999999999999999985
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.77 E-value=0.00011 Score=76.85 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCeeeEEEE--------CCeeCCCc-c---ccceEEEEecC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPTLKVSGTVTY--------NGHDMDEF-V---PQRTAAYISQH 234 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~---~~~~~~~G~I~~--------nG~~~~~~-~---~~~~~~yv~Q~ 234 (991)
+.+++|+|||||||||++++|++.+ .++ +|++.. +|.++... . ..+.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---CcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 4689999999999999999999876 333 677766 56655321 0 12345666664
No 360
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.77 E-value=0.00054 Score=77.00 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred ccCce--eeeeCCeEEEEeeccCCChhhhhhhhhccc--cCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 884 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 884 L~~VS--g~~~pG~ltALmG~SGAGKTTLldvLagRk--t~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
||.+- |.+.||.++.|.||+|+|||||+-.|+..- .+|. -++|++........++..|+..|+-......|+.
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~---VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV---AAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe---EEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 66654 599999999999999999999999998763 2332 3688887644344667778887765555667888
Q ss_pred HHHHh
Q 001957 960 ESLLF 964 (991)
Q Consensus 960 EsL~f 964 (991)
|.+..
T Consensus 126 ~~l~~ 130 (356)
T 3hr8_A 126 QALEI 130 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 361
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.76 E-value=0.0004 Score=87.28 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=32.8
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
..+++||++.+.+|++++|+|||||||||||+.++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999999999999999994
No 362
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.75 E-value=0.00022 Score=85.10 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=39.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCe
Q 001957 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (991)
Q Consensus 167 iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~ 217 (991)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|.
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 566666666 89999999999999999999999998765 788776653
No 363
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.73 E-value=0.00099 Score=67.53 Aligned_cols=50 Identities=32% Similarity=0.378 Sum_probs=27.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----CCCC-CeeeEEEECC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTL-KVSGTVTYNG 216 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~----~~~~-~~~G~I~~nG 216 (991)
.+|+++|+..++. .++|+|++|+|||||++.+.+.. .++. ...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3789999998887 56899999999999999999742 2221 1245666665
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.72 E-value=0.001 Score=77.14 Aligned_cols=38 Identities=29% Similarity=0.571 Sum_probs=32.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44677777779999999999999999999998888654
No 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.72 E-value=0.001 Score=67.46 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
++|++++...++. -++++|.+|+|||||++.|.+.+ |.|...+.+.++|+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4578888887777 67999999999999999999864 556678889888854
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.71 E-value=0.00035 Score=71.96 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.6
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
.++|.+++|+|+||||||||++.|++.-.. ..|+|.+.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 578999999999999999999999986421 1245555443
No 367
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.71 E-value=0.0004 Score=83.92 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=56.1
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCCcccccceeeEEeccC
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND 950 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~D 950 (991)
..++++++..+++|..+.|+||||+|||||+..||+.-.. ..-|.+.+++.+.. .+...++||+|-.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~--~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPED--ENMPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTC--TTSCEEEEEETTH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCccc--ccCCcEEEEecch
Confidence 4678999999999999999999999999999999997542 23489999998864 5667789998754
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.67 E-value=0.00032 Score=72.72 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeee--EEEECCeeC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG--TVTYNGHDM 219 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G--~I~~nG~~~ 219 (991)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChHH
Confidence 4578999999999999999999999998754 67 777775443
No 369
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.65 E-value=0.00051 Score=69.09 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=26.9
Q ss_pred eeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 889 g~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+.+|+.++|.||+|+|||||+..|++..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999999875
No 370
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.64 E-value=0.00032 Score=83.48 Aligned_cols=42 Identities=36% Similarity=0.490 Sum_probs=33.6
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE-EE-EEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NI-TISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G-~I-~inG~~ 933 (991)
.+++|++++|+|+||||||||+++|||+... ..| .| +++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4689999999999999999999999998641 122 56 477755
No 371
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.62 E-value=0.00056 Score=76.90 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=43.1
Q ss_pred cceeecceEEEeeCchhhhhccccccceeecc--------------CceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 854 ~~l~f~dv~y~v~~~~~~k~~g~~~~~~~lL~--------------~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
..+.|+|+++.+|.. +..|+ |+...+.+|+..+|+|+||+|||||+..|+.-
T Consensus 132 ~ri~Fe~ltp~yP~e------------r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 132 NKILFENLTPLHANS------------RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TSCCTTTSCEESCCS------------BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCceeccccccCCCC------------ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 357899999887532 23455 78999999999999999999999999999864
No 372
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.57 E-value=0.00076 Score=77.09 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=45.7
Q ss_pred ccCce-eeeeCCeEEEEeeccCCChhhhhhhhh--ccc---cCCeeeEEEEEcCccC-Ccc---cccceeeEEec
Q 001957 884 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLA--GRK---TGGYITGNITISGYPK-KQE---TFARISGYCEQ 948 (991)
Q Consensus 884 L~~VS-g~~~pG~ltALmG~SGAGKTTLldvLa--gRk---t~G~i~G~I~inG~~~-~~~---tf~r~~GY~eQ 948 (991)
|+.+- |.+++|++++|+|+||+|||||+..|+ +-. .+|.-.+.++|+|... .+. ..++..|+.+|
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 55543 899999999999999999999999554 332 1334457899999763 221 13455677665
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.57 E-value=0.0012 Score=68.25 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445556664 999999999999999999863
No 374
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.55 E-value=0.00051 Score=70.24 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 166 ~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
.+|+++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47788888877775 689999999999999999874
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.54 E-value=0.00074 Score=71.23 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred ccCceeeee---CCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 884 LNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 884 L~~VSg~~~---pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
|.+++.++. +|.+++|.|++||||||+++.|+.+-..| +++.....|
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~---~~~~~~~~p 62 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKD---YDVIMTREP 62 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTT---SCEEEECTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcC---CCceeecCC
Confidence 666777666 89999999999999999999999885422 355555554
No 376
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.51 E-value=0.00094 Score=75.46 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=36.9
Q ss_pred eCCeE-EEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCccCCcccccceeeEEe
Q 001957 892 RPGVL-TALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYPKKQETFARISGYCE 947 (991)
Q Consensus 892 ~pG~l-tALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~~~~~tf~r~~GY~e 947 (991)
+.|.. +||+|++||||||||+.|+|... -+..+|.|.++|.+. .+.-..|+..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~ 238 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIR 238 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCS
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchh
Confidence 34554 99999999999999999999863 225689999999663 2333456544
No 377
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.48 E-value=0.0015 Score=75.58 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=31.2
Q ss_pred EEEEeeccCCChhhhhhhhhcccc----------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT----------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt----------~G~i~G~I~inG~~ 933 (991)
-+||+|+||||||||++.|+|... ...+.|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 589999999999999999999852 12467999999986
No 378
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.47 E-value=0.00032 Score=79.24 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=35.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeCCCccccceEEEEecCCCCCCCCCHH
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (991)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45788888877 999999999999999998875433 444444443322110011223344444333345555
Q ss_pred HHHHH
Q 001957 245 ETLAF 249 (991)
Q Consensus 245 E~l~f 249 (991)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 55544
No 379
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.47 E-value=0.0011 Score=66.91 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCee
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~ 218 (991)
.+++|+|+||||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998765432225778877654
No 380
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.00092 Score=68.80 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.44 E-value=0.0008 Score=69.29 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.3
Q ss_pred eeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 891 ~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+|.+++|+|+||||||||.+.|+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3588999999999999999999998765
No 382
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.43 E-value=0.00092 Score=84.99 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=33.4
Q ss_pred eeeccCceeeeeC-------CeEEEEeeccCCChhhhhhhhhccc
Q 001957 881 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 881 ~~lL~~VSg~~~p-------G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+++||++.+.+ |++++|+|||||||||||+.| |-.
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 4579999999988 999999999999999999999 654
No 383
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.42 E-value=0.013 Score=67.86 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=31.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4467777777999999999999999999998877754
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.41 E-value=0.0013 Score=66.64 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999976
No 385
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.003 Score=69.78 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=32.2
Q ss_pred cCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHhhccCceEEEEEecCCch
Q 001957 340 GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (991)
Q Consensus 340 ~~p~vLllDEPTsG-LD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~ 387 (991)
.++.+||+||+-.- .+..+...+...+..+.. .+..+|++.+++..+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQK 144 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChHH
Confidence 45889999998762 344677778888877654 456677777665543
No 386
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.36 E-value=0.0056 Score=66.01 Aligned_cols=28 Identities=43% Similarity=0.666 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.++.-++|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998753
No 387
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.001 Score=69.98 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=35.5
Q ss_pred ccCc-eeeeeCCeEEEEeeccCCChhhhhhhhhcc-ccCCeeeEEEEEcCcc
Q 001957 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYP 933 (991)
Q Consensus 884 L~~V-Sg~~~pG~ltALmG~SGAGKTTLldvLagR-kt~G~i~G~I~inG~~ 933 (991)
|+++ .|.+++|++++|.|++|||||||+.-++.. ...| .+-+++++..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~ 61 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE 61 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC
Confidence 7777 899999999999999999999995544433 2222 2456677654
No 388
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.0011 Score=66.97 Aligned_cols=30 Identities=40% Similarity=0.514 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
++|.+++|.|++||||||+.+.|+..+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987653
No 389
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.26 E-value=0.0025 Score=62.77 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=28.3
Q ss_pred EEEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
.++|+|++|+|||||++.|+|.+. .....|.+.++|+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 51 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 51 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcE
Confidence 589999999999999999998642 12245666666543
No 390
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.26 E-value=0.0011 Score=76.38 Aligned_cols=46 Identities=24% Similarity=0.080 Sum_probs=39.5
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 169 ~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999999876 67888776554
No 391
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.26 E-value=0.0026 Score=63.66 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=30.1
Q ss_pred EEEEeeccCCChhhhhhhhhccc---------cCCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK---------TGGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk---------t~G~i~G~I~inG~~ 933 (991)
-++|+|++|+|||||++.|+|.+ |.....|.+.++|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 58999999999999999999964 223456777777654
No 392
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.25 E-value=0.0017 Score=66.98 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.2
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhh
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLa 915 (991)
+.+..|.|| +++|.|++||||||+|+.|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566777 99999999999999999773
No 393
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.25 E-value=0.0043 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 394
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.20 E-value=0.00046 Score=77.94 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=27.0
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+.+++++++.+ +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45677887765 999999999999999998764
No 395
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.19 E-value=0.0017 Score=75.06 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=24.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLag 916 (991)
.|.+|.+++|+|||||||||||++|++
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 367789999999999999999999986
No 396
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.17 E-value=0.0013 Score=74.08 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 170 ~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 397
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.16 E-value=0.0023 Score=65.68 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=37.6
Q ss_pred ChhHhHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEecCCchh--HhhcCeEEEec
Q 001957 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET--YDLFDDIILLS 399 (991)
Q Consensus 325 SGGqrqRvsia~~L~~~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~q~~~~~--~~lfD~vilL~ 399 (991)
+.|+.+|..+++.+..+|..+.++ ++.+++.....+.+.++.. .+..+|+.. +...+. ...||.+++|.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhcCcHhhCCEEEEEE
Confidence 678899999998888887654333 3345555555555544431 244555543 333333 56788888773
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.16 E-value=0.0017 Score=65.15 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++|.+++|+|++||||||+.+.|+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999874
No 399
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0022 Score=72.90 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 171 vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678888999999999999999999997
No 400
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.023 Score=59.61 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
-++|+|++|+|||||++.|.|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4799999999999999999997654
No 401
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.08 E-value=0.0019 Score=72.17 Aligned_cols=27 Identities=30% Similarity=0.738 Sum_probs=23.2
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhh
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVL 914 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvL 914 (991)
.+..|.|| +++|+||||||||||||.|
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHH
Confidence 34456777 8999999999999999986
No 402
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.07 E-value=0.0005 Score=76.82 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.6
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcC
Q 001957 167 ILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 167 iL~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+|+++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666677778877 99999999999999999999764
No 403
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.07 E-value=0.0034 Score=62.82 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 404
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.06 E-value=0.0012 Score=73.99 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.9
Q ss_pred eeeccCceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 881 ~~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.+++++++...++|..++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678889999999999999999999999999999865
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.05 E-value=0.0028 Score=63.89 Aligned_cols=39 Identities=33% Similarity=0.319 Sum_probs=30.4
Q ss_pred eEEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~~ 933 (991)
.+++++|+||||||||++.|.+.. ..|..-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 478999999999999999999873 235556778877654
No 406
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.03 E-value=0.002 Score=67.10 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=40.7
Q ss_pred CeEEEEeeccCCChhhhhhhhhccccCC-eeeEEEEE--------cCccCCc----ccccceeeEEecc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITI--------SGYPKKQ----ETFARISGYCEQN 949 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRkt~G-~i~G~I~i--------nG~~~~~----~tf~r~~GY~eQ~ 949 (991)
+..+||+|+|||||||+.+.|+++-..- ..+|+|.. +|.+... ....+..|++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 4579999999999999999999874221 34588887 7776541 1345667888775
No 407
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.00 E-value=0.00082 Score=73.79 Aligned_cols=47 Identities=26% Similarity=0.147 Sum_probs=38.0
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 169 KD-VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 169 ~~-vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCC
Confidence 45 777766 9999999999999999999999998765 56777665543
No 408
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.99 E-value=0.0016 Score=77.52 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
..+++++..+ ||..+.|+||||+|||||+..||+.-. .-.|.|.++|.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 4567777777 899999999999999999999998752 456788777765
No 409
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.96 E-value=0.0015 Score=73.34 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.5
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+++..++|+|++|||||||||.|+|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999999853
No 410
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.95 E-value=0.0015 Score=69.81 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCeeC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG~~~ 219 (991)
..+++.+++|+|+|||||||+.+.|+..+.. +.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 3567889999999999999999999998642 4466666543
No 411
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.94 E-value=0.023 Score=60.14 Aligned_cols=27 Identities=48% Similarity=0.620 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..-++|.||+|+|||||+++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999999865
No 412
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0018 Score=72.15 Aligned_cols=55 Identities=16% Similarity=-0.044 Sum_probs=30.7
Q ss_pred EEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccCC-cccccceeeEEeccCCC
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-QETFARISGYCEQNDIH 952 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~~-~~tf~r~~GY~eQ~Dih 952 (991)
..|.||+|+|||||+.+|++.-. +...|.|.++|.+.. .....+.++|++|.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF-GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS-CTTCCC------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCCCeEEecceeecccccccceeeeecccceE
Confidence 89999999999999999998532 223688899887643 11225677899887743
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.90 E-value=0.0031 Score=64.55 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001957 180 LTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG 200 (991)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 414
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.88 E-value=0.0099 Score=62.29 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe---------cCCchhHhhcCeEEEec
Q 001957 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---------QPAPETYDLFDDIILLS 399 (991)
Q Consensus 341 ~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~---------q~~~~~~~lfD~vilL~ 399 (991)
+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 578999999965 664 35555666665 4777777766 56788899999999985
No 415
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.038 Score=61.99 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999764
No 416
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.82 E-value=0.0042 Score=62.39 Aligned_cols=27 Identities=41% Similarity=0.667 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 417
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.76 E-value=0.0033 Score=68.99 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=39.9
Q ss_pred CChhHhHHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHhhccCc-eEEEEEecCCchhHhhcCeE
Q 001957 324 ISGGQKKRVTTGEMMV--GPALALFMDEISTGLDSST-TFQIVNCLRQNIHINSG-TAVISLLQPAPETYDLFDDI 395 (991)
Q Consensus 324 LSGGqrqRvsia~~L~--~~p~vLllDEPTsGLD~~t-~~~i~~~L~~l~~~~~~-t~ii~i~q~~~~~~~lfD~v 395 (991)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 4566666 78999998 7899876 56677777776543332 23333233333444444443
No 418
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.74 E-value=0.004 Score=62.03 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 419
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.74 E-value=0.0028 Score=64.91 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..+++|.|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 420
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.72 E-value=0.005 Score=69.64 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.0
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 001957 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (991)
Q Consensus 168 L~~vs~~i~~Ge~~allGpsGsGKSTLL~~La 199 (991)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677777775 99999999999999999986
No 421
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0012 Score=73.61 Aligned_cols=41 Identities=32% Similarity=0.606 Sum_probs=35.2
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCC
Q 001957 165 LTILKDVSGVIKPGRL--TLLLGPPSSGKTTLLLALAGKLDPT 205 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~--~allGpsGsGKSTLL~~LaG~~~~~ 205 (991)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3477778888888988 9999999999999999999987543
No 422
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.0039 Score=62.88 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=26.0
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..++|.+++|+|++||||||+...|+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999999874
No 423
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.59 E-value=0.0056 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997754
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.58 E-value=0.0028 Score=69.43 Aligned_cols=46 Identities=22% Similarity=0.011 Sum_probs=37.5
Q ss_pred cCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 885 ~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
++++.. +|+.++++|++|+||||+...||+.-. ...|.|.+.+...
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCc
Confidence 567777 899999999999999999999999853 1246788877664
No 425
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.56 E-value=0.0044 Score=68.23 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
++...++|++++++|++|+||||++..||+.-.. -.|.|.+.+..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D 141 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAAD 141 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccc
Confidence 3444678999999999999999999999998431 13566666654
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.52 E-value=0.0041 Score=64.24 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=32.3
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeE--EEEEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG--NITISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G--~I~inG~~ 933 (991)
..++|.+++|+|++||||||+.+.|+++-. ...| -+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 357899999999999999999999998753 1124 56666543
No 427
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.50 E-value=0.0035 Score=64.09 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk 918 (991)
..+++|.|+|||||||+.+.|+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 428
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.49 E-value=0.0048 Score=67.60 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=25.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++|..++++|++|+||||++..||+.-
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999875
No 429
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0056 Score=69.60 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=34.9
Q ss_pred ceeeeeCCeEEEEeeccCCChhhhhhhhhccc---------cCCeeeEEEEEcCc
Q 001957 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---------TGGYITGNITISGY 932 (991)
Q Consensus 887 VSg~~~pG~ltALmG~SGAGKTTLldvLagRk---------t~G~i~G~I~inG~ 932 (991)
+-|.++.|..++|+|.+|+|||||++.|+|.+ |-....|.+.++|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34566788899999999999999999999983 23445788888774
No 430
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.46 E-value=0.0048 Score=62.33 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.1
Q ss_pred CceeeeeCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 886 ~VSg~~~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
++|....+|..+.|+|++||||||+.+.||.+
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46677778999999999999999999999976
No 431
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.45 E-value=0.0049 Score=60.79 Aligned_cols=33 Identities=24% Similarity=0.135 Sum_probs=25.8
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEEE
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~ 928 (991)
+++|+|++||||||+.+.|+.+-..-.+.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 689999999999999999998743334555543
No 432
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.44 E-value=0.017 Score=76.30 Aligned_cols=30 Identities=40% Similarity=0.565 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 174 VIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 174 ~i~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987643
No 433
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.44 E-value=0.0066 Score=61.18 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.39 E-value=0.0053 Score=62.90 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=20.1
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
+++|+|++||||||+.+.||+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 435
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.39 E-value=0.0053 Score=72.07 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=40.1
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCccC
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~~ 934 (991)
..++++++.+.+| +.|.||+|+|||||++.||+... .|-|.++|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHH
Confidence 4588899999999 88999999999999999998764 46788988664
No 436
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.37 E-value=0.0068 Score=60.33 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccccCC
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGG 921 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRkt~G 921 (991)
.|.++.|+|+|||||||+.+.|+.+-..+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35789999999999999999999875433
No 437
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.36 E-value=0.0078 Score=60.40 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 178 Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998654
No 438
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.35 E-value=0.0053 Score=65.45 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=34.4
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~ 932 (991)
.++++.+ ..+++.++.|+|+|||||||+...|+.+...+ -+.++|-
T Consensus 21 ~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~----~~~~~~D 66 (253)
T 2p5t_B 21 SLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGN----IVIIDGD 66 (253)
T ss_dssp HHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTC----CEEECGG
T ss_pred HHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCCC----cEEEecH
Confidence 3455555 56788999999999999999999999875422 3455553
No 439
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.34 E-value=0.0022 Score=71.66 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=33.3
Q ss_pred eeccCceeeeeCCeE--EEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~l--tALmG~SGAGKTTLldvLagRk 918 (991)
++|++++..+++|+. ++|+|++||||||+...||+..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468888888999988 9999999999999999999864
No 440
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.016 Score=64.72 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
..+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999998753
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.28 E-value=0.0078 Score=60.34 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 442
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.27 E-value=0.0056 Score=68.65 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=51.6
Q ss_pred ccCce--eeeeCCeEEEEeeccCCChhhhhhhhhccc--cCCeeeEEEEEcCccCCcccccceeeEEeccCCCCCCCCHH
Q 001957 884 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959 (991)
Q Consensus 884 L~~VS--g~~~pG~ltALmG~SGAGKTTLldvLagRk--t~G~i~G~I~inG~~~~~~tf~r~~GY~eQ~Dih~p~~TVr 959 (991)
|+.+- |.+++|.++.|.|++|+|||||+-.|+... .++ .-++|+.........++..|+-.|+-......|+.
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e 125 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHH
Confidence 55554 489999999999999999999977776542 222 23455554322223455667766554444556888
Q ss_pred HHHHhh
Q 001957 960 ESLLFS 965 (991)
Q Consensus 960 EsL~fs 965 (991)
+.+...
T Consensus 126 ~~l~~~ 131 (349)
T 2zr9_A 126 QALEIA 131 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 443
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.26 E-value=0.15 Score=59.88 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=31.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34566666669999999999999999999987776543
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.20 E-value=0.0089 Score=63.09 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999764
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.17 E-value=0.0087 Score=62.94 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999864
No 446
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.16 E-value=0.006 Score=62.13 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
++.|+||||||||||++-|..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987553
No 447
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.16 E-value=0.0098 Score=60.50 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999886
No 448
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.13 E-value=0.01 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999999765
No 449
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.12 E-value=0.0092 Score=63.69 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 450
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.10 E-value=0.0065 Score=64.11 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
.+++|+|+|||||||+.+.||.+-
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999653
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.08 E-value=0.0057 Score=61.36 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEeeccCCChhhhhhhhhcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagR 917 (991)
-++|+|+||+|||||++.|+|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999994
No 452
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.08 E-value=0.01 Score=58.27 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 001957 180 LTLLLGPPSSGKTTLLLAL 198 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~L 198 (991)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 453
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.06 E-value=0.012 Score=60.13 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987654
No 454
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.00 E-value=0.012 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 001957 179 RLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG 200 (991)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 455
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.99 E-value=0.0084 Score=60.86 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 456
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.97 E-value=0.0097 Score=60.58 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999976654
No 457
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.95 E-value=0.0084 Score=64.02 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.0
Q ss_pred EEEEeeccCCChhhhhhhhhccccCCeeeEEE
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNI 927 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt~G~i~G~I 927 (991)
+++|||+||||||||-..||++...-.+.+|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 78999999999999999999876433455554
No 458
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.93 E-value=0.011 Score=59.23 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.+..++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 459
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.93 E-value=0.0091 Score=67.11 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=26.6
Q ss_pred eeccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 882 ~lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
..|++++..+. -+|++|.+|||||||++.|+|+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 35778877776 89999999999999999999975
No 460
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.93 E-value=0.0087 Score=61.11 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEeeccCCChhhhhhhhhc
Q 001957 896 LTALMGVSGAGKTTLMDVLAG 916 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLag 916 (991)
.++|+|++||||||+.+.||+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 461
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.91 E-value=0.0094 Score=59.70 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
.+++|+|++|||||||+..|++.+.....--|.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 37899999999999999999987653211134555433
No 462
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.89 E-value=0.0061 Score=70.86 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.3
Q ss_pred eccCceeeeeCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 883 lL~~VSg~~~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
.|++++|.++||+++.|.|++|+|||||+.-||+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999999999999999998764
No 463
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.86 E-value=0.0089 Score=59.55 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 464
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.86 E-value=0.017 Score=62.09 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
-+||+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999975
No 465
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.85 E-value=0.037 Score=64.85 Aligned_cols=28 Identities=46% Similarity=0.726 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 175 i~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455669999999999999999998764
No 466
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.82 E-value=0.013 Score=59.86 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999764
No 467
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.81 E-value=0.013 Score=63.85 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=28.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~~~~~~~G~I~~nG 216 (991)
..|.++.|.||||||||||.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999987653 23455554
No 468
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.81 E-value=0.013 Score=59.19 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 469
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.78 E-value=0.014 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG 200 (991)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 470
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.76 E-value=0.024 Score=56.92 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~ 201 (991)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766654
No 471
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.76 E-value=0.0051 Score=63.18 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~~ 204 (991)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 472
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.72 E-value=0.0051 Score=75.00 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=30.7
Q ss_pred eeeCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcCcc
Q 001957 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (991)
Q Consensus 890 ~~~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG~~ 933 (991)
.+++|..+||+|++|||||||++.|++....-...|+| .+|..
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~ 47 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTT 47 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcc
Confidence 45789999999999999999999999654211123444 45544
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.70 E-value=0.15 Score=67.60 Aligned_cols=35 Identities=40% Similarity=0.521 Sum_probs=29.1
Q ss_pred eeeceE--EEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 167 ILKDVS--GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 167 iL~~vs--~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
-|+.+- +=+++|+++.|.||||+|||||...++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 466654 36999999999999999999998877654
No 474
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.67 E-value=0.0067 Score=62.26 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=21.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
+++|+|+|||||||+.+.|+.+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 475
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.64 E-value=0.015 Score=59.54 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
++|.+++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999997653
No 476
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.63 E-value=0.022 Score=56.82 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=30.4
Q ss_pred CeEEEEeeccCCChhhhhhhhhccc------cCCeeeEEEEEcCcc
Q 001957 894 GVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGNITISGYP 933 (991)
Q Consensus 894 G~ltALmG~SGAGKTTLldvLagRk------t~G~i~G~I~inG~~ 933 (991)
.--++++|.+|+|||||++.|.+.. |.|.....+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 3468999999999999999999875 344444466666554
No 477
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.63 E-value=0.013 Score=58.90 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.9
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+++.++.|+|++||||||+.+.|+.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 478
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.018 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 177 ~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.59 E-value=0.022 Score=62.67 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=24.0
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcccc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt 919 (991)
.|| .+|++|.+|||||||+|.|.|.+.
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~~ 35 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTKV 35 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCCc
Confidence 455 899999999999999999999874
No 480
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.58 E-value=0.017 Score=59.77 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 481
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.57 E-value=0.021 Score=57.25 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=29.6
Q ss_pred EEEEeeccCCChhhhhhhhhccc-------cCCeeeEEEEEcCccC
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-------TGGYITGNITISGYPK 934 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-------t~G~i~G~I~inG~~~ 934 (991)
-++|+|.+|+|||||++-|.+.+ |.+.....+.++|...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 58999999999999999887764 2333344788888653
No 482
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.56 E-value=0.0057 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 001957 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 176 ~~Ge~~allGpsGsGKSTLL~~LaG~~ 202 (991)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 483
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.54 E-value=0.017 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~~ 203 (991)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 484
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.54 E-value=0.011 Score=59.20 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhcc
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagR 917 (991)
.+|.+++|+|++||||||+.+.||.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
No 485
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.49 E-value=0.047 Score=55.73 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHhhccCceEEEEEe---------cCCchhHhhcCeEEEec
Q 001957 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---------QPAPETYDLFDDIILLS 399 (991)
Q Consensus 341 ~p~vLllDEPTsGLD~~t~~~i~~~L~~l~~~~~~t~ii~i~---------q~~~~~~~lfD~vilL~ 399 (991)
+.+++++||.-- +|.. +++.|+.++. .+..+|++-+ .+++++..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 3556666665 4778888766 66788999999998775
No 486
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.48 E-value=0.013 Score=61.57 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.8
Q ss_pred EEEEeeccCCChhhhhhhhhcccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt 919 (991)
-++|+|.+|+|||||++.|.|.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999864
No 487
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.47 E-value=0.014 Score=58.49 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|.+++|.|++||||||+.+.|+-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998753
No 488
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.43 E-value=0.016 Score=62.19 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 001957 180 LTLLLGPPSSGKTTLLLALAGKL 202 (991)
Q Consensus 180 ~~allGpsGsGKSTLL~~LaG~~ 202 (991)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 489
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.40 E-value=0.03 Score=61.53 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=32.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 001957 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 165 ~~iL~~vs~~i~~Ge~~allGpsGsGKSTLL~~LaG~ 201 (991)
...+|+....+ .|+-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46899988887 8999999999999999999999885
No 490
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.40 E-value=0.019 Score=58.14 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~ 201 (991)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999986
No 491
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.39 E-value=0.026 Score=59.90 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.0
Q ss_pred eEEEEeeccCCChhhhhhhhhccc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk 918 (991)
--++|||.+|||||||+|.|.|++
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999999986
No 492
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.32 E-value=0.025 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 001957 179 RLTLLLGPPSSGKTTLLLALAGK 201 (991)
Q Consensus 179 e~~allGpsGsGKSTLL~~LaG~ 201 (991)
-.++|+|.||+|||||+++|+|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999984
No 493
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.28 E-value=0.017 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
+|.+++|.|++||||||+.+.|+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999764
No 494
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.28 E-value=0.018 Score=57.64 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=27.0
Q ss_pred EEEEeeccCCChhhhhhhhhccc-cCCeeeEEEEEcCc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITISGY 932 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk-t~G~i~G~I~inG~ 932 (991)
+++++|+||||||||+..|+..- ..|+--|-|..+++
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 78999999999999999998763 23444455554443
No 495
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.25 E-value=0.03 Score=54.48 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=27.0
Q ss_pred EEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 897 TALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 897 tALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
++++|.+|+|||||++.|.+... .......+.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE
Confidence 68999999999999999986542 22345666677654
No 496
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.25 E-value=0.019 Score=62.47 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=28.2
Q ss_pred eCCeEEEEeeccCCChhhhhhhhhccccCCeeeEEEEEcC
Q 001957 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (991)
Q Consensus 892 ~pG~ltALmG~SGAGKTTLldvLagRkt~G~i~G~I~inG 931 (991)
.+|.++.|+|+|||||||+...|+.+... |-+.||+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEec
Confidence 45789999999999999999999876432 3355555
No 497
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.22 E-value=0.014 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEeeccCCChhhhhhhhhccc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRk 918 (991)
+++|+|++||||||+.+.||.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57999999999999999999763
No 498
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.21 E-value=0.029 Score=56.90 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEEeeccCCChhhhhhhhhcccc---------CCeeeEEEEEcCcc
Q 001957 896 LTALMGVSGAGKTTLMDVLAGRKT---------GGYITGNITISGYP 933 (991)
Q Consensus 896 ltALmG~SGAGKTTLldvLagRkt---------~G~i~G~I~inG~~ 933 (991)
-++|+|.+|+|||||++.|+|.+. .....+.+.++|.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 589999999999999999986531 12356778888765
No 499
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.19 E-value=0.028 Score=56.24 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=30.2
Q ss_pred eEEEEeeccCCChhhhhhhhhccc--------cCCeeeEEEEEcCcc
Q 001957 895 VLTALMGVSGAGKTTLMDVLAGRK--------TGGYITGNITISGYP 933 (991)
Q Consensus 895 ~ltALmG~SGAGKTTLldvLagRk--------t~G~i~G~I~inG~~ 933 (991)
--++++|.+|+|||||++.|.+.+ |.|.....+.++|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLS 68 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEE
Confidence 358999999999999999999886 335555666666543
No 500
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.17 E-value=0.016 Score=58.06 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCeEEEEeeccCCChhhhhhhhhccc
Q 001957 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (991)
Q Consensus 893 pG~ltALmG~SGAGKTTLldvLagRk 918 (991)
++..+.|+|++||||||+-..||.+-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999999664
Done!