BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001958
(991 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex
pdb|3T5V|D Chain D, Sac3:thp1:sem1 Complex
Length = 316
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 52/251 (20%)
Query: 743 APDPSTVRPEEVLEKALQMVQNSQKNYL-----YKCDQLKSIRQDLTVQ----------- 786
+P PS VRP +L K L + ++ L + D+++SIRQD T Q
Sbjct: 2 SPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61
Query: 787 ----RIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAE--GIEGCC---MEFSA 837
RI + + +++ +++ +L + ++ L +Y + G C EF A
Sbjct: 62 ERIVRIHLLILHIMVKSNVEFSLQQ-ELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRA 120
Query: 838 YHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYI----------- 886
Y LL I + RL QDK V+ AL R +S+ Y
Sbjct: 121 YALLSKIRDPQYDENI----QRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCL 176
Query: 887 ----MFFRLYKTA--PNLNTCLMDLYVEKMRFKAVSCMS----RSYRPTVPVSYVAQVLG 936
FF+L ++ P L + +++ +RF A+ +S + ++P +P Y+ +L
Sbjct: 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKP-IPFIYLENMLL 235
Query: 937 FTGVSPTNEEC 947
F E C
Sbjct: 236 FNNRQEIIEFC 246
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 946 ECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKV 983
E +RD + ++ V+W+K HG LV + G+ +D K+
Sbjct: 539 ELFDRDDNAVQFAVDWVKEHGPRLVKTSVGQTFVDTKM 576
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|D Chain D, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 282
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 693 NLYVRRASALL--ISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVR 750
N+ +RR +AL + S+ G V + KG +E+ K +A P ++
Sbjct: 128 NINIRRVAALEGDVLGSYQHGARIGV------LVAAKGADEELVKHIAMHVAASKPEFIK 181
Query: 751 PEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGD- 809
PE+V + ++ Q + + + K I + + R++ + T +V T +E
Sbjct: 182 PEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMK-KFTGEVSLTGQPFVMEPSKT 240
Query: 810 ----LPEYN-QCQSQLKILYAEGIEGCCMEFSA 837
L E+N + ++ EGIE +F+A
Sbjct: 241 VGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAA 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,420,890
Number of Sequences: 62578
Number of extensions: 1222207
Number of successful extensions: 2060
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 20
length of query: 991
length of database: 14,973,337
effective HSP length: 108
effective length of query: 883
effective length of database: 8,214,913
effective search space: 7253768179
effective search space used: 7253768179
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)