Query 001958
Match_columns 991
No_of_seqs 247 out of 633
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 1.8E-53 6.1E-58 460.2 22.7 212 742-972 1-256 (316)
2 4b0z_A RPN12, 26S proteasome r 100.0 6.3E-38 2.2E-42 324.3 21.3 194 766-979 20-226 (229)
3 4b4t_T 26S proteasome regulato 100.0 2E-36 7E-41 321.3 11.5 188 766-970 17-229 (274)
4 1rz4_A Eukaryotic translation 99.2 9.2E-11 3.2E-15 122.2 15.9 168 790-979 22-189 (226)
5 3txn_A 26S proteasome regulato 97.2 0.0058 2E-07 68.5 16.1 144 793-938 179-329 (394)
6 4b4t_R RPN7, 26S proteasome re 96.2 0.032 1.1E-06 62.2 12.9 160 795-972 209-382 (429)
7 4b4t_O 26S proteasome regulato 95.3 0.25 8.5E-06 54.8 15.3 165 768-938 142-320 (393)
8 4b4t_Q 26S proteasome regulato 95.1 0.32 1.1E-05 50.8 14.7 145 793-939 215-370 (434)
9 4b4t_P 26S proteasome regulato 94.0 0.43 1.5E-05 53.6 13.3 144 791-939 215-373 (445)
10 3chm_A COP9 signalosome comple 91.9 0.36 1.2E-05 48.5 7.8 79 870-968 59-141 (169)
11 3t5x_A PCI domain-containing p 91.4 0.39 1.3E-05 49.0 7.6 129 799-940 19-156 (203)
12 3t5v_B Nuclear mRNA export pro 76.3 20 0.00068 41.0 12.8 180 793-983 219-429 (455)
13 4b4t_S RPN3, 26S proteasome re 73.3 3.2 0.00011 48.4 5.4 66 874-940 346-416 (523)
14 3txn_A 26S proteasome regulato 42.5 83 0.0028 35.3 9.6 103 788-896 214-318 (394)
15 1ufm_A COP9 complex subunit 4; 38.1 18 0.00062 32.3 2.8 31 908-939 14-44 (84)
16 2jya_A AGR_C_3324P, uncharacte 33.4 19 0.00066 34.0 2.3 24 952-975 58-81 (106)
17 2lju_A Putative oxidoreductase 30.4 20 0.00068 34.0 1.8 21 953-973 67-87 (108)
18 2wpv_A GET4, UPF0363 protein Y 28.8 5.9E+02 0.02 27.6 13.2 92 801-893 153-268 (312)
19 3e3v_A Regulatory protein RECX 26.0 4.2E+02 0.014 26.2 10.6 69 751-826 48-129 (177)
20 1deq_A Fibrinogen (alpha chain 23.2 1.4E+02 0.0049 33.7 7.2 65 754-825 117-193 (390)
21 3e21_A HFAF1, FAS-associated f 22.6 44 0.0015 27.1 2.2 15 955-969 21-35 (45)
22 3t46_A SCIN-D; secreted, virul 22.5 2.1E+02 0.0072 26.3 6.8 56 771-826 19-81 (91)
23 3d5l_A Regulatory protein RECX 22.2 3.2E+02 0.011 28.0 9.2 69 751-826 91-172 (221)
24 3c1d_A Protein ORAA, regulator 22.2 2.6E+02 0.0087 27.1 8.1 67 751-825 45-123 (159)
25 2ddh_A Acyl-COA oxidase; beta 22.1 2.4E+02 0.0081 33.4 9.2 137 746-896 474-640 (661)
26 3t47_A SCIN-D; secreted, virul 21.2 2.4E+02 0.0084 25.5 6.8 55 772-826 13-74 (81)
27 1u59_A Tyrosine-protein kinase 21.1 1.2E+02 0.004 30.5 5.6 52 457-508 234-286 (287)
28 3ghg_A Fibrinogen alpha chain; 20.2 2E+02 0.0067 34.0 7.7 68 753-827 113-192 (562)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-53 Score=460.17 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=189.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhh-----chhhHHHHHHHhhhHHhhhHhhccchhhHHHHHHHHHHHHh------cCC-
Q 001958 742 SAPDPSTVRPEEVLEKALQMVQNS-----QKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIE------NGD- 809 (991)
Q Consensus 742 aaPdPsdVRPp~VL~KTLdyLl~k-----~k~Y~FI~DRLRSIRQDLTVQ~I~neFTV~VYE~hARfaLe------agD- 809 (991)
++|+|++|||++||++||+||+.+ ..+|+||||||||||||||||+|+++|||+|||+||||||+ .+|
T Consensus 1 ~~P~P~~vRP~~vL~~Tl~yL~~~~~~~~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~ 80 (316)
T 3t5v_A 1 GSPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV 80 (316)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTGGGTTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCChhhcCCHHHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 479999999999999999999985 36899999999999999999999999999999999999974 343
Q ss_pred -------hhhHHHHHHHHHHHHHcC-----cCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhhCHHHHHHHHHH
Q 001958 810 -------LPEYNQCQSQLKILYAEG-----IEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVR 877 (991)
Q Consensus 810 -------L~EFNQCqtQLk~LY~eg-----i~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikkdp~VqfAL~Vr 877 (991)
++++++|+.+|++||++. ..+||+||+||+|||+|.+ .+++..+..||.+++++|.|++||+|+
T Consensus 81 ~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~----~~~~~~l~~Lp~~i~~~p~Vq~AL~l~ 156 (316)
T 3t5v_A 81 EFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRD----PQYDENIQRLPKHIFQDKLVQMALCFR 156 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTC----THHHHHHTTSCHHHHTSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcc----chHHHHHHhCCHHHhcCHHHHHHHHHH
Confidence 346778888999999972 3479999999999999853 478889999999999999999999999
Q ss_pred HHHH---------------hCCHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHhhCC
Q 001958 878 AAVS---------------SGNYIMFFRLYKT--APNLNTCLMDLYVEKMRFKAVSCMSRSYR---PTVPVSYVAQVLGF 937 (991)
Q Consensus 878 ~Ala---------------~GNYvRFFrLyks--AP~L~acLMd~f~~r~R~~ALk~I~KAYr---ptIPL~~LaelLgF 937 (991)
+|+. +|||+|||+|+++ +|+|++|||++||++||..||++|+|||+ ++||+++|+++|+|
T Consensus 157 ~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~F 236 (316)
T 3t5v_A 157 RVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLF 236 (316)
T ss_dssp HHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTC
T ss_pred HHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCC
Confidence 9996 5999999999997 89999999999999999999999999997 58999999999999
Q ss_pred CCCCCCCcccccccCCCHHHHHHHHHHcCCeEeeC
Q 001958 938 TGVSPTNEECEERDSDGLEECVEWLKAHGASLVTD 972 (991)
Q Consensus 938 ds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D 972 (991)
+++ +||++||+.|||.+..|
T Consensus 237 ds~---------------ee~~~F~~~~gl~~~~~ 256 (316)
T 3t5v_A 237 NNR---------------QEIIEFCNYYSIEIING 256 (316)
T ss_dssp SSH---------------HHHHHHHHHTTCCEETT
T ss_pred CCH---------------HHHHHHHHHCCCeEeCC
Confidence 988 89999999999999754
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-38 Score=324.27 Aligned_cols=194 Identities=16% Similarity=0.305 Sum_probs=179.0
Q ss_pred chhhHHHHHHHhhhHHhhhHhhc--------cchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcC--CChhHH
Q 001958 766 QKNYLYKCDQLKSIRQDLTVQRI--------RNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIE--GCCMEF 835 (991)
Q Consensus 766 ~k~Y~FI~DRLRSIRQDLTVQ~I--------~neFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~--gnEaEF 835 (991)
.++|+++++.|+.||+|||+|++ ...+|++|||++||++|+.+|+++||||++||+.+|.+++. +++.||
T Consensus 20 ~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e~ 99 (229)
T 4b0z_A 20 RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGLV 99 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHHHH
Confidence 46899999999999999999998 34589999999999999999999999999999999999764 578999
Q ss_pred HHHHHHHHhhccCchHHHHHHHHhhhHH--HhhCHHHHHHHHHHHHHHhCCHHHHHHHHhcCChh-HHHHHHHHHHHHHH
Q 001958 836 SAYHLLCVILHSNNKRELLSLMSRLSDK--AKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNL-NTCLMDLYVEKMRF 912 (991)
Q Consensus 836 ~AYrILY~Ll~~nN~sDLl~~L~~Lp~e--ikkdp~VqfAL~Vr~Ala~GNYvRFFrLyksAP~L-~acLMd~f~~r~R~ 912 (991)
++|+|||.|.+ ++..|++..|+.|+.+ +++||.|+||++|++|+++|||++||++++++|.+ .+|+|+++++++|.
T Consensus 100 ~~~~LL~lL~~-~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~ 178 (229)
T 4b0z_A 100 TGLNLLYLLSE-NRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRN 178 (229)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 99999998876 7899999999999865 58999999999999999999999999999999976 49999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHhhCCCCCCCCCcccccccCCCHHHHHHHHHHcCCeEeeCCCCceEE
Q 001958 913 KAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQL 979 (991)
Q Consensus 913 ~ALk~I~KAYrptIPL~~LaelLgFds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D~~Ge~~l 979 (991)
.||+||+|||. +||+++++++|+|+++ +||++||+++||.+. +|.+++
T Consensus 179 ~~l~~i~kaY~-~i~l~~~~~~L~f~s~---------------~e~~~f~~~~gw~i~---dg~i~F 226 (229)
T 4b0z_A 179 EIATCAEKVYS-EIPLSNATSLLYLENT---------------KETEKLAEERGWDIR---DGVIYF 226 (229)
T ss_dssp HHHHHHHHHCS-EEEHHHHHHHTTCSSH---------------HHHHHHHHHHTCEEE---TTEEEC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHhCCCCH---------------HHHHHHHHHcCCEEe---CCEEec
Confidence 99999999995 9999999999999988 899999999999983 476654
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=321.27 Aligned_cols=188 Identities=17% Similarity=0.226 Sum_probs=146.4
Q ss_pred chhhHHHHHHHhhhHHhhhHhhccc------------h--hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcC--
Q 001958 766 QKNYLYKCDQLKSIRQDLTVQRIRN------------Q--LTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIE-- 829 (991)
Q Consensus 766 ~k~Y~FI~DRLRSIRQDLTVQ~I~n------------e--FTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~-- 829 (991)
.++|+.+++.|..||++||.+++-. + ++++|||+|||++|+.+|+++||||++||+.+|.+...
T Consensus 17 ~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l 96 (274)
T 4b4t_T 17 NGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKL 96 (274)
T ss_dssp --------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCS
T ss_pred ccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccC
Confidence 3589999999999999999998632 2 46789999999999999999999999999999987532
Q ss_pred ---CChhHHHHHHHHHHhhccCchHHHHHHHHhhhH---HHhhCHHHHHHHHHHHHHHhCCHHHHHHHHhcCCh---hHH
Q 001958 830 ---GCCMEFSAYHLLCVILHSNNKRELLSLMSRLSD---KAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPN---LNT 900 (991)
Q Consensus 830 ---gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~---eikkdp~VqfAL~Vr~Ala~GNYvRFFrLyksAP~---L~a 900 (991)
+++.||+||+|||+|.+ ++..|++..|+.|+. ++++|++|+|||+|++++++|||++||+|++++|. +.+
T Consensus 97 ~~s~~~~e~~~~~LLylL~~-n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~ 175 (274)
T 4b4t_T 97 SESDKKSKLISLYLLNLLSQ-NNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFD 175 (274)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHH
T ss_pred CCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHH
Confidence 46899999999998865 678999999999984 57889999999999999999999999999998754 469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCCCCCCcccccccCCCHHHHHHHHHHcCCeEe
Q 001958 901 CLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLV 970 (991)
Q Consensus 901 cLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~ 970 (991)
|+|++|++++|..|+.||+|||. +||+.+++++|+|+++ +||.+|++++||.+.
T Consensus 176 ~f~d~l~~~iR~~a~~~i~kaY~-~i~l~~~~~~L~F~s~---------------~e~~~F~~~~gW~~~ 229 (274)
T 4b4t_T 176 SFTDILKSAIRDEIAKNTELSYD-FLPLSNIKALLFFNNE---------------KETEKFALERNWPIV 229 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-SCCHHHHHHHHTCCSH---------------HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhCCCCH---------------HHHHHHHHHcCCEEe
Confidence 99999999999999999999997 8999999999999988 899999999999884
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.24 E-value=9.2e-11 Score=122.17 Aligned_cols=168 Identities=12% Similarity=0.159 Sum_probs=132.3
Q ss_pred chhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhhCHH
Q 001958 790 NQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKA 869 (991)
Q Consensus 790 neFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikkdp~ 869 (991)
|...+.++|..+...++..-. .+..+++ |..||.-.......++.+..||..|.. ....||+..+.-||..+..++.
T Consensus 22 np~~l~~le~Yv~qq~~~~~Y-D~~anla-lLklYq~~p~~~~~~ii~~iLlk~L~~-~p~~DF~~~l~LIp~~~~~~~~ 98 (226)
T 1rz4_A 22 NPENLATLERYVETQAKENAY-DLEANLA-VLKLYQFNPAFFQTTVTAQILLKALTN-LPHTDFTLCKCMIDQAHQEERP 98 (226)
T ss_dssp CGGGHHHHHHHHHHHHHHTCC-CHHHHHH-HHHHHHHSGGGCCHHHHHHHHHHHHHT-TTSTHHHHHHHTSCHHHHTSTT
T ss_pred CHHHHHHHHHHHHHHHhcccc-cHHHHHH-HHHHHhcCCcccchhHHHHHHHHHHHc-CCHHHHHHHHHhCChhhhcCHH
Confidence 778999999999987765422 2334555 445555432335678899888887654 4668999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCCCCCCccccc
Q 001958 870 VKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEE 949 (991)
Q Consensus 870 VqfAL~Vr~Ala~GNYvRFFrLyksAP~L~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~d~a~~~~e~ 949 (991)
|+..+.|...++.|+|.+||+.++.-+.+. ..|..|.+.+|..++.++.+||. +||+..++++||+.++
T Consensus 99 I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~-~~i~gf~dsIR~~I~~~i~~aY~-sI~~~~la~lLg~~s~--------- 167 (226)
T 1rz4_A 99 IRQILYLGDLLETCHFQAFWQALDENMDLL-EGITGFEDSVRKFICHVVGITYQ-HIDRWLLAEMLGDLSD--------- 167 (226)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTTCHHH-HTSTTHHHHHHHHHHHHHHHHCS-EECHHHHHHHTTSCCH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcChhHH-HHHhHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHcCCCH---------
Confidence 999999999999999999999987654322 23334889999999999999998 9999999999998776
Q ss_pred ccCCCHHHHHHHHHHcCCeEeeCCCCceEE
Q 001958 950 RDSDGLEECVEWLKAHGASLVTDANGEVQL 979 (991)
Q Consensus 950 ~~~~~lEEc~eFLk~~Gl~v~~D~~Ge~~l 979 (991)
+++.+|++..||.+ |++|.+.+
T Consensus 168 ------~el~~fi~~~GW~v--d~~g~I~~ 189 (226)
T 1rz4_A 168 ------SQLKVWMSKYGWSA--DESGQIFI 189 (226)
T ss_dssp ------HHHHHHHHHHTCEE--CC--CEEC
T ss_pred ------HHHHHHHHHCCCEE--CCCccEEe
Confidence 79999999999998 34566644
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.19 E-value=0.0058 Score=68.48 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHcCcCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhhCHHHH
Q 001958 793 TAKVYETHARLAI-ENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVK 871 (991)
Q Consensus 793 TV~VYE~hARfaL-eagDL~EFNQCqtQLk~LY~egi~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikkdp~Vq 871 (991)
.-.+.|....+|+ +.+|+.+=-.+.-.-..-|++...+....+.-|-+|+.|+. +...|+...+..=......+|.|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CCHHHHHHHhccccccccCCccHH
Confidence 3457778888888 88887542222221123354432223456788888988875 455566654431100112689999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhcCC--hh----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCC
Q 001958 872 HALAVRAAVSSGNYIMFFRLYKTAP--NL----NTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFT 938 (991)
Q Consensus 872 fAL~Vr~Ala~GNYvRFFrLyksAP--~L----~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFd 938 (991)
....|..|+..+++..|+.++.... .+ ..--+..+..+||..+|..+.+.|. .|.+++|++.|++.
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYs-rIsl~~iA~~l~ls 329 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYS-RVQVAHVAESIQLP 329 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCS-EEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhc-eeeHHHHHHHHCcC
Confidence 9999999999999999999987421 11 1222456778999999999999998 89999999999994
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.032 Score=62.19 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCc-C--CChhHHHHHHHHHHhhccCchHHHHHHHHhhh---HHHhhCH
Q 001958 795 KVYETHARLAIENGDLPEYNQCQSQLKILYAEGI-E--GCCMEFSAYHLLCVILHSNNKRELLSLMSRLS---DKAKQDK 868 (991)
Q Consensus 795 ~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi-~--gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp---~eikkdp 868 (991)
.+.+..+++++..+++ .....-+.+++...- . .....+.-|.+|+.|+. .++.++...+..-+ .-+...|
T Consensus 209 ~lk~~~gl~~l~~r~f---~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~-~~r~~l~~~v~~~~~~~~~l~~~p 284 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNF---KEAAKLLVDSLATFTSIELTSYESIATYASVTGLFT-LERTDLKSKVIDSPELLSLISTTA 284 (429)
T ss_dssp HHHHHHHHGGGGTSCH---HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHSSSSSHHHHHGGGSHH
T ss_pred HHHHHHHHHHHHhChH---HHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhc-CCHHHHHHHHhcCHHHHhhccCCh
Confidence 3444556666665554 333333344443321 1 12356777888887765 45556554331111 1123457
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhc--------CChhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCC
Q 001958 869 AVKHALAVRAAVSSGNYIMFFRLYKT--------APNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGV 940 (991)
Q Consensus 869 ~VqfAL~Vr~Ala~GNYvRFFrLyks--------AP~L~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~ 940 (991)
.++..+.+..++..++|..||..+.. -+++..+ ++.+..+||.++|..+++.|+ .|.++.|++.|+++.+
T Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~~Ys-~I~l~~mA~~l~~s~~ 362 (429)
T 4b4t_R 285 ALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLESYK-TLSLKSMASAFGVSVA 362 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHHTCS-EEEHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHHHHHHHHHHHhHHhc-eeeHHHHHHHhCcCHH
Confidence 88888899999999999999986531 1344443 467899999999999999998 9999999999999753
Q ss_pred CCCCcccccccCCCHHHHHHHHHHcCCeEeeC
Q 001958 941 SPTNEECEERDSDGLEECVEWLKAHGASLVTD 972 (991)
Q Consensus 941 d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D 972 (991)
..| .++..|+..--+.-..|
T Consensus 363 -----~~E-------~~L~~lI~~g~l~akID 382 (429)
T 4b4t_R 363 -----FLD-------NDLGKFIPNKQLNCVID 382 (429)
T ss_dssp -----HHH-------HHHHHHHHHTSSCEEEE
T ss_pred -----HHH-------HHHHHHHHcCCeEEEEc
Confidence 111 34555666656655566
No 7
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.25 Score=54.79 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=104.5
Q ss_pred hhHHHHHHHhhhHHhhhH-hhccchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcC--cCCChhHHHHHHHHHHh
Q 001958 768 NYLYKCDQLKSIRQDLTV-QRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEG--IEGCCMEFSAYHLLCVI 844 (991)
Q Consensus 768 ~Y~FI~DRLRSIRQDLTV-Q~I~neFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~eg--i~gnEaEF~AYrILY~L 844 (991)
+..-+...++.++.-|-- ..+.....-.+|+..++++-..++..+|-.+.-.-..+|... +...+..-.+|.++..+
T Consensus 142 d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~a 221 (393)
T 4b4t_O 142 DLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISA 221 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHH
Confidence 344455556655532221 122334556789999999888888877766554444455532 22223344678777655
Q ss_pred hccC---chHHHHHHHHhhhH--HHhhCHHHHHHHHHHHHHHhCCHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHH
Q 001958 845 LHSN---NKRELLSLMSRLSD--KAKQDKAVKHALAVRAAVSSGNYIMFFRLYK----TAPNLNTCLMDLYVEKMRFKAV 915 (991)
Q Consensus 845 l~~n---N~sDLl~~L~~Lp~--eikkdp~VqfAL~Vr~Ala~GNYvRFFrLyk----sAP~L~acLMd~f~~r~R~~AL 915 (991)
+-.. +-++++. .|. ++..++.+..-+++..++..|++..|..+++ ..|.+... ......++|..+|
T Consensus 222 ll~~~i~~f~eLL~----~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~-~~~l~~kirll~l 296 (393)
T 4b4t_O 222 LLGDKIYNFGELLH----HPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH-ESFLRQKICLMTL 296 (393)
T ss_dssp HHCCSSCSTHHHHH----SCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH-HHHHHHHHHHHHH
T ss_pred HcCCCCCChHHHhC----ChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh-HHHHHHHHHHHHH
Confidence 4322 2233332 221 2345666667788999999999999998754 44554432 3456789999999
Q ss_pred HHHHHH--cCCCCCHHHHHHhhCCC
Q 001958 916 SCMSRS--YRPTVPVSYVAQVLGFT 938 (991)
Q Consensus 916 k~I~KA--YrptIPL~~LaelLgFd 938 (991)
..++.+ |+ .|+++.|++.|+.+
T Consensus 297 ~~l~~~~~~~-~i~f~~ia~~l~i~ 320 (393)
T 4b4t_O 297 IETVFVKNIR-MLSFEDISKATHLP 320 (393)
T ss_dssp HHHHCSSSCC-CEEHHHHHHHHTCC
T ss_pred HHHhccCCCC-cCcHHHHHHHhCcC
Confidence 888744 55 89999999999995
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.32 Score=50.83 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcCCC----hhHHHHHHHHHHhhccCchHHHHHHHHhhh-HHHhhC
Q 001958 793 TAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGC----CMEFSAYHLLCVILHSNNKRELLSLMSRLS-DKAKQD 867 (991)
Q Consensus 793 TV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~gn----EaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp-~eikkd 867 (991)
...+++...++++..+|..+--.|..+....|....... ......|.+|+.++. +...++...+.... ......
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIML-NLIDDVKNILNAKYTKETYQS 293 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHCSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-cchhHHHhHHHHHHHHHHhcc
Confidence 457888888999888998877777766666666532211 223344555655543 23333333333211 112346
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhcC------ChhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCC
Q 001958 868 KAVKHALAVRAAVSSGNYIMFFRLYKTA------PNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTG 939 (991)
Q Consensus 868 p~VqfAL~Vr~Ala~GNYvRFFrLyksA------P~L~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds 939 (991)
+.+..-..+..++..+++..|.+.+... .....-.++.+..++|...|..+++.|. .|.+..|++.|+.+.
T Consensus 294 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~-~i~l~~la~~l~~~~ 370 (434)
T 4b4t_Q 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFE-CVEISHISKIIGLDT 370 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCS-CEEHHHHHHHHTCCH
T ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHhCcCH
Confidence 6777777888999999999999887632 2223445667788999999999999998 999999999999864
No 9
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.43 Score=53.65 Aligned_cols=144 Identities=11% Similarity=0.129 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcCCC-hhHHHHHHHHHHhhcc--CchHHHHHHHHhhhHHHhhC
Q 001958 791 QLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGC-CMEFSAYHLLCVILHS--NNKRELLSLMSRLSDKAKQD 867 (991)
Q Consensus 791 eFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~gn-EaEF~AYrILY~Ll~~--nN~sDLl~~L~~Lp~eikkd 867 (991)
+.-+.+||..+|++...+|+-+--+|.-.+...|....... ......|-|++.|+.. +...+++..+.. ....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~----~~~~ 290 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN----DNNL 290 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH----HSSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh----cccc
Confidence 45678999999999999999888888777766665421111 1233444455555532 233444443321 1223
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhcC-------Chh-----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhh
Q 001958 868 KAVKHALAVRAAVSSGNYIMFFRLYKTA-------PNL-----NTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVL 935 (991)
Q Consensus 868 p~VqfAL~Vr~Ala~GNYvRFFrLyksA-------P~L-----~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelL 935 (991)
+.|..--.|..++..++..+|-.+...- +.. ..-.+..+..+++.+.|..|.+-|. .|.++.|+++|
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys-~I~l~~la~lL 369 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS-RITLLRLNELL 369 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEE-EEEHHHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhc-eeeHHHHHHHh
Confidence 4444455677888888776666554321 111 1234567888999999999999998 99999999999
Q ss_pred CCCC
Q 001958 936 GFTG 939 (991)
Q Consensus 936 gFds 939 (991)
+++.
T Consensus 370 ~l~~ 373 (445)
T 4b4t_P 370 DLTE 373 (445)
T ss_dssp TSCH
T ss_pred CcCH
Confidence 9964
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=91.93 E-value=0.36 Score=48.48 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCCCCCCccccc
Q 001958 870 VKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEE 949 (991)
Q Consensus 870 VqfAL~Vr~Ala~GNYvRFFrLyksAP~L~acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~d~a~~~~e~ 949 (991)
-..-+++..+|..|+|..|-.+....|.|. +....++|+.+|..|+..-+ .||.+.|++.|+..+.
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~~~~~p~L~----~~~~~KlrlLtL~sLa~~~~-~lsy~~I~~~l~i~~~--------- 124 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCNATRLPHLS----PDQILKLKQLTVLTLAESNK-VLPYDTLMVELDVSNV--------- 124 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHGGGSCCCC----HHHHHHHHHHHHHHHHHHCS-EEEHHHHHHHHTCCSH---------
T ss_pred hhHHHHHHHHHhcCCHHHHHHhHHhCcchH----HHHHHHHHHHHHHHHHHhCC-CcCHHHHHHHhCCCCH---------
Confidence 345678999999999999988877888765 67789999999999998865 8999999999999866
Q ss_pred ccCCCHHHHHHHHH-H---cCCe
Q 001958 950 RDSDGLEECVEWLK-A---HGAS 968 (991)
Q Consensus 950 ~~~~~lEEc~eFLk-~---~Gl~ 968 (991)
+|.+.|+. . .|+.
T Consensus 125 ------~evE~lvI~~ai~~gLI 141 (169)
T 3chm_A 125 ------RELEDFLINECMYAGIV 141 (169)
T ss_dssp ------HHHHHHHHHTHHHHTSE
T ss_pred ------HHHHHHHHHHHHHhCCe
Confidence 68888887 3 4764
No 11
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=91.41 E-value=0.39 Score=48.96 Aligned_cols=129 Identities=17% Similarity=0.162 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHcCcCCChhHHHHHHHHHHhhccC-chHHHHHHHHhhhHHHhhCHHHHHHHHHH
Q 001958 799 THARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSN-NKRELLSLMSRLSDKAKQDKAVKHALAVR 877 (991)
Q Consensus 799 ~hARfaLeagDL~EFNQCqtQLk~LY~egi~gnEaEF~AYrILY~Ll~~n-N~sDLl~~L~~Lp~eikkdp~VqfAL~Vr 877 (991)
-..|+++..+|+.+=.+|+.+=...+.+...++..-..-|-|+..|+.+. ...+++. .. +... =..|.
T Consensus 19 YlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~---~~-------~~~~-y~~L~ 87 (203)
T 3t5x_A 19 YVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLK---KY-------HLMQ-FAEVT 87 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHH---HT-------TCGG-GHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhh---hC-------chhH-HHHHH
Confidence 45577777777655444443322222221112333344455555554421 1122221 11 1111 24788
Q ss_pred HHHHhCCHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHH------HcCCCCCHHHHHHhhCCCCC
Q 001958 878 AAVSSGNYIMFFRLYKTA--PNLNTCLMDLYVEKMRFKAVSCMSR------SYRPTVPVSYVAQVLGFTGV 940 (991)
Q Consensus 878 ~Ala~GNYvRFFrLyksA--P~L~acLMd~f~~r~R~~ALk~I~K------AYrptIPL~~LaelLgFds~ 940 (991)
.|+..||...|=+.+.+- .++...+. ..++++|..+++.+.| .|. .||++.|+..|.+...
T Consensus 88 ~Avr~Gdl~~f~~~l~~~~~~f~~~~~~-lll~rlr~~v~r~l~rkv~~~~~~~-rI~l~~i~~~l~~~~~ 156 (203)
T 3t5x_A 88 RAVSEGNLLLLHEALAKHEAFFIRCGIF-LILEKLKIITYRNLFKKVYLLLKTH-QLSLDAFLVALKFMQV 156 (203)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHHHHTCH-HHHHTHHHHHHHHHHHHHHHHHCCS-EEEHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHhHHHHHHCChH-HHHHHHHHHHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCC
Confidence 999999999999998743 22222222 4578999988888876 354 8999999999998643
No 12
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=76.30 E-value=20 Score=41.02 Aligned_cols=180 Identities=11% Similarity=0.021 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHH-HHH-HHHcC----cCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHH-Hh
Q 001958 793 TAKVYETHARLAIENGDLPEYNQCQSQ-LKI-LYAEG----IEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDK-AK 865 (991)
Q Consensus 793 TV~VYE~hARfaLeagDL~EFNQCqtQ-Lk~-LY~eg----i~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~e-ik 865 (991)
.|.-+=...|+++..+|+.+=.+|+.+ ++. ++.+. ..++..-..-|-|...|+. .++|.. ++
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLl-----------G~~P~~~ll 287 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLIL-----------GKMVKWGPL 287 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHT-----------TCCBCHHHH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHc-----------CCCCCHHHH
Confidence 344444566777777777655555443 444 44331 1122332334444444433 223322 22
Q ss_pred hC---HHHHH-HHHHHHHHHhCCHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHH--------HcC-CCCCHHH
Q 001958 866 QD---KAVKH-ALAVRAAVSSGNYIMFFRLYKTA--PNLNTCLMDLYVEKMRFKAVSCMSR--------SYR-PTVPVSY 930 (991)
Q Consensus 866 kd---p~Vqf-AL~Vr~Ala~GNYvRFFrLyksA--P~L~acLMd~f~~r~R~~ALk~I~K--------AYr-ptIPL~~ 930 (991)
.. +.+.. =..|..|+..||...|=+.+.+- .++...++-..++++|..+++.+.| +|+ ..||++.
T Consensus 288 ~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~ 367 (455)
T 3t5v_B 288 RPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSL 367 (455)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHH
Confidence 22 44543 46799999999999999998743 2333334467778888877666654 243 4799999
Q ss_pred HHHhhCCCCCCC--CCcc------cccccCCCHHHHHHHHHHcCCeE-eeCCCCceEEeccc
Q 001958 931 VAQVLGFTGVSP--TNEE------CEERDSDGLEECVEWLKAHGASL-VTDANGEVQLDAKV 983 (991)
Q Consensus 931 LaelLgFds~d~--a~~~------~e~~~~~~lEEc~eFLk~~Gl~v-~~D~~Ge~~ld~K~ 983 (991)
|+..|.+...+. +... .+..+.+..|-.+.=|...|..= ..+....++|-.|.
T Consensus 368 i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 368 IERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 999999852210 0000 11123444444466666677731 12222344555565
No 13
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.35 E-value=3.2 Score=48.42 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCHHHHHHHHhcCC-hhH----HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCC
Q 001958 874 LAVRAAVSSGNYIMFFRLYKTAP-NLN----TCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGV 940 (991)
Q Consensus 874 L~Vr~Ala~GNYvRFFrLyksAP-~L~----acLMd~f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~ 940 (991)
+.|..|+..||..+|=..+..-- ... ..|+.+...-+.+..|+.|+++|. +|++.+|+..|++++.
T Consensus 346 ~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Ys-rIsL~dIa~kL~L~s~ 416 (523)
T 4b4t_S 346 YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYK-KISLRDICLKLNLDSE 416 (523)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSS-EECHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHhCCCCH
Confidence 46888999999999988876422 111 135666777777788899999997 8999999999999865
No 14
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.45 E-value=83 Score=35.28 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred ccchhhHHHHHHHHHHHHhcCChhhHHHHHHH-HHHHHHcCcCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhh
Q 001958 788 IRNQLTAKVYETHARLAIENGDLPEYNQCQSQ-LKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQ 866 (991)
Q Consensus 788 I~neFTV~VYE~hARfaLeagDL~EFNQCqtQ-Lk~LY~egi~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikk 866 (991)
+.+.+.+.|+-..+-.+|..++..+++.-+.+ ....| ...|+..|.-|...+..++-.++...|......+..
T Consensus 214 ~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~------~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~ 287 (394)
T 3txn_A 214 VDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY------SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAE 287 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTT
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc------CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 33445566665566667777887777754321 11113 346777887776666655566777778777777888
Q ss_pred CHHHH-HHHHHHHHHHhCCHHHHHHHHhcCC
Q 001958 867 DKAVK-HALAVRAAVSSGNYIMFFRLYKTAP 896 (991)
Q Consensus 867 dp~Vq-fAL~Vr~Ala~GNYvRFFrLyksAP 896 (991)
|+.+. |.-.|++.+...|+.++++-|..+.
T Consensus 288 D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIs 318 (394)
T 3txn_A 288 DVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQ 318 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhhceee
Confidence 99875 4567889999999999998777554
No 15
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=38.06 E-value=18 Score=32.32 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCC
Q 001958 908 EKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTG 939 (991)
Q Consensus 908 ~r~R~~ALk~I~KAYrptIPL~~LaelLgFds 939 (991)
.++..+.|..+.+-|. .|.++.|+++|+++.
T Consensus 14 ~~v~E~nl~~is~~Y~-~Isl~~La~ll~ls~ 44 (84)
T 1ufm_A 14 RAVIEHNLLSASKLYN-NITFEELGALLEIPA 44 (84)
T ss_dssp HHHHHHHHHHHHHSCS-EEEHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhcC-eeeHHHHHHHHCcCH
Confidence 4666778888999998 999999999999974
No 16
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=33.35 E-value=19 Score=34.01 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHcCCeEeeCCCC
Q 001958 952 SDGLEECVEWLKAHGASLVTDANG 975 (991)
Q Consensus 952 ~~~lEEc~eFLk~~Gl~v~~D~~G 975 (991)
.+..|+++.||+.+|+.....+.-
T Consensus 58 F~skE~AiayAek~G~~y~V~ep~ 81 (106)
T 2jya_A 58 FETQEQAEAYAQRKGIEYRVILPK 81 (106)
T ss_dssp ESSHHHHHHHHHHHTCEEEECCCT
T ss_pred cCCHHHHHHHHHHcCCEEEEeCCC
Confidence 344599999999999987765433
No 17
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=30.40 E-value=20 Score=34.00 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCeEeeCC
Q 001958 953 DGLEECVEWLKAHGASLVTDA 973 (991)
Q Consensus 953 ~~lEEc~eFLk~~Gl~v~~D~ 973 (991)
+..|+++.||+.+|+.....+
T Consensus 67 ~skE~AiayAek~G~~y~V~e 87 (108)
T 2lju_A 67 TTRELAIAYAVAHKIDYTVLQ 87 (108)
T ss_dssp SSHHHHHHHHHHTTCEEEEEC
T ss_pred CCHHHHHHHHHHcCCEEEEec
Confidence 445999999999999876553
No 18
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=28.75 E-value=5.9e+02 Score=27.65 Aligned_cols=92 Identities=9% Similarity=-0.025 Sum_probs=54.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHcC--cCCChhHHHHHH-HHHHhhccCchHHHHHHHHhhhHHH-------------
Q 001958 801 ARLAIENGDLPEYNQCQSQLKILYAEG--IEGCCMEFSAYH-LLCVILHSNNKRELLSLMSRLSDKA------------- 864 (991)
Q Consensus 801 ARfaLeagDL~EFNQCqtQLk~LY~eg--i~gnEaEF~AYr-ILY~Ll~~nN~sDLl~~L~~Lp~ei------------- 864 (991)
|+.|+..++.+.-..|-..|.+.|... -.+.|..+.+-| +|-+|+ .+|..+....+..+...+
T Consensus 153 A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~-l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~ 231 (312)
T 2wpv_A 153 AERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLF-ISNISFAHESKDIFLERFIEKFHPKYEKIDK 231 (312)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-TTBHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 888888887555557888888888762 122444433334 444333 356555444333332221
Q ss_pred --------hhCHHHHHHHHHHHHHHhCCHHHHHHHHh
Q 001958 865 --------KQDKAVKHALAVRAAVSSGNYIMFFRLYK 893 (991)
Q Consensus 865 --------kkdp~VqfAL~Vr~Ala~GNYvRFFrLyk 893 (991)
-..|.+.|+--|..++..++..-|=.|..
T Consensus 232 ~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~ 268 (312)
T 2wpv_A 232 NGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKN 268 (312)
T ss_dssp TTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 13588999999999999999654444433
No 19
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.98 E-value=4.2e+02 Score=26.17 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhh----chhh--HHHHHHHh-------hhHHhhhHhhccchhhHHHHHHHHHHHHhcCChhhHHHHH
Q 001958 751 PEEVLEKALQMVQNS----QKNY--LYKCDQLK-------SIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQ 817 (991)
Q Consensus 751 Pp~VL~KTLdyLl~k----~k~Y--~FI~DRLR-------SIRQDLTVQ~I~neFTV~VYE~hARfaLeagDL~EFNQCq 817 (991)
++++...+|++|... ...| .||..+++ .|||+|..-+|..+..-.+++. ..+-.++..|.
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~-------~~~~de~e~a~ 120 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALIL-------YTDKLQVEKGV 120 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTT-------SCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHh-------CCchhHHHHHH
Confidence 478999999999874 3334 68888885 5999999888886554444331 12245677777
Q ss_pred HHHHHHHHc
Q 001958 818 SQLKILYAE 826 (991)
Q Consensus 818 tQLk~LY~e 826 (991)
.-+...|..
T Consensus 121 ~l~~Kk~~~ 129 (177)
T 3e3v_A 121 TLAEKLANR 129 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777766654
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.21 E-value=1.4e+02 Score=33.74 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHhhhHHhhhHhhccchhhHHHHHHHHHHHHhc-----------C-ChhhHHHHHHHHH
Q 001958 754 VLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIEN-----------G-DLPEYNQCQSQLK 821 (991)
Q Consensus 754 VL~KTLdyLl~k~k~Y~FI~DRLRSIRQDLTVQ~I~neFTV~VYE~hARfaLea-----------g-DL~EFNQCqtQLk 821 (991)
-|++=+.||+.+...- +. +||.+|.+|.=|+++ |+=+|.-+++++.. . |++-|.+-|.||.
T Consensus 117 eLe~~i~~lk~~V~~q-~~--~ir~Lq~~l~~q~~k----iqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQ-VQ--RINLLQKNVRDQLVD----MKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHH-hH--HHHHHHHHHHHHHHH----HHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 3555555665542211 12 566666666555533 34455555655532 3 6666777777766
Q ss_pred HHHH
Q 001958 822 ILYA 825 (991)
Q Consensus 822 ~LY~ 825 (991)
.+-+
T Consensus 190 qv~a 193 (390)
T 1deq_A 190 QVIA 193 (390)
T ss_pred hhhh
Confidence 6544
No 21
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=22.64 E-value=44 Score=27.10 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCeE
Q 001958 955 LEECVEWLKAHGASL 969 (991)
Q Consensus 955 lEEc~eFLk~~Gl~v 969 (991)
.++|+.||+.++|.+
T Consensus 21 ~~~A~~~Lea~nWDL 35 (45)
T 3e21_A 21 IDEAITLLEQNNWDL 35 (45)
T ss_dssp HHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCcH
Confidence 389999999999976
No 22
>3t46_A SCIN-D; secreted, virulence, immune system; 1.50A {Staphylococcus aureus subsp}
Probab=22.50 E-value=2.1e+02 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHHhhhHHhhhHhhcc----c---hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHc
Q 001958 771 YKCDQLKSIRQDLTVQRIR----N---QLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAE 826 (991)
Q Consensus 771 FI~DRLRSIRQDLTVQ~I~----n---eFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~e 826 (991)
=|-|+||++--.+-|-.+. | .-+|.+.|..|..+|...|+..+-..-.+|..+|.+
T Consensus 19 ~la~eL~~Ll~~~nvn~LA~~sLn~YyKR~Imm~~y~AK~Alksknf~kM~~AK~~LE~IY~e 81 (91)
T 3t46_A 19 ALVDQLHELIANTDLNKLSYLNLDAFQKRDILAAHYIAKSAIRTKNLDQMTKAKQRLESIYNS 81 (91)
T ss_dssp HHHHHHHHHHHTTCGGGCGGGCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHhccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3778888886666655443 2 248999999999999999999999999999999986
No 23
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.18 E-value=3.2e+02 Score=27.96 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhh----chhh--HHHHHHHh-------hhHHhhhHhhccchhhHHHHHHHHHHHHhcCChhhHHHHH
Q 001958 751 PEEVLEKALQMVQNS----QKNY--LYKCDQLK-------SIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQ 817 (991)
Q Consensus 751 Pp~VL~KTLdyLl~k----~k~Y--~FI~DRLR-------SIRQDLTVQ~I~neFTV~VYE~hARfaLeagDL~EFNQCq 817 (991)
++++...+|++|.+. ...| .||..|++ .|||+|..-+|..+..-.+++.+ .+-.++..|.
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~-------~~~~e~e~a~ 163 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQF-------TPEVQAELAK 163 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGC-------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhC-------CHHHHHHHHH
Confidence 678999999999874 3333 68889887 69999998888865444444321 2234566777
Q ss_pred HHHHHHHHc
Q 001958 818 SQLKILYAE 826 (991)
Q Consensus 818 tQLk~LY~e 826 (991)
..+...|..
T Consensus 164 ~l~~Kk~~~ 172 (221)
T 3d5l_A 164 KLALKLFRR 172 (221)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777654
No 24
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.18 E-value=2.6e+02 Score=27.10 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhh----chhh--HHHHHHHh------hhHHhhhHhhccchhhHHHHHHHHHHHHhcCChhhHHHHHH
Q 001958 751 PEEVLEKALQMVQNS----QKNY--LYKCDQLK------SIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQS 818 (991)
Q Consensus 751 Pp~VL~KTLdyLl~k----~k~Y--~FI~DRLR------SIRQDLTVQ~I~neFTV~VYE~hARfaLeagDL~EFNQCqt 818 (991)
++++...+|++|.+. ...| .||..+++ .|||+|..-+|..+..-.++|.+ +.+++..+..
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~~al~~~--------~~d~~~~a~~ 116 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMREA--------DIDWAALARD 116 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHH--------CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHHHHHHHc--------CHhHHHHHHH
Confidence 788999999999874 3333 57888876 49999999899877655566542 2256666666
Q ss_pred HHHHHHH
Q 001958 819 QLKILYA 825 (991)
Q Consensus 819 QLk~LY~ 825 (991)
.+..-|.
T Consensus 117 l~~kk~~ 123 (159)
T 3c1d_A 117 QATRKYG 123 (159)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 6665564
No 25
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=22.09 E-value=2.4e+02 Score=33.43 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=66.7
Q ss_pred CCCCCCHHHHHHHHHHHHhh--chhhHHHHHHHhhhH-HhhhHhhccchhhHHHHHHHHHHHHhc------------CCh
Q 001958 746 PSTVRPEEVLEKALQMVQNS--QKNYLYKCDQLKSIR-QDLTVQRIRNQLTAKVYETHARLAIEN------------GDL 810 (991)
Q Consensus 746 PsdVRPp~VL~KTLdyLl~k--~k~Y~FI~DRLRSIR-QDLTVQ~I~neFTV~VYE~hARfaLea------------gDL 810 (991)
..+++-+..|.+.+++.... ... ..+|+..+ ....-....|.-.+.+.+ .++.|++. ..-
T Consensus 474 ~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~g~~~~~a~n~~~~~~~~-~a~a~~~~~~~~~f~~~~~~~~~ 548 (661)
T 2ddh_A 474 MVDINSLEGLTEAYKLRAARLVEIA----AKNLQTHVSHRKSKEVAWNLTSVDLVR-ASEAHCHYVVVKVFSDKLPKIQD 548 (661)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHTHHHHHH-HHHHHHHHHHHHHHHHHGGGCSS
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788899999999886542 111 12232211 111112222332333333 33333221 112
Q ss_pred hhHHHHHHHHHHHHHcC-cCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhhCHHHHHHHHHHHHH---------
Q 001958 811 PEYNQCQSQLKILYAEG-IEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAV--------- 880 (991)
Q Consensus 811 ~EFNQCqtQLk~LY~eg-i~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikkdp~VqfAL~Vr~Al--------- 880 (991)
++...-+.+|..||... +..+-.+|..+..| .......+...+..|-.+++- +|+.|..||
T Consensus 549 ~~~~~~L~~l~~L~~l~~i~~~~~~~l~~~~~----s~~~~~~~~~~~~~l~~~lrp-----~av~Lvdaf~~~d~~l~s 619 (661)
T 2ddh_A 549 KAVQAVLRNLCLLYSLYGISQKGGDFLEGSII----TGAQLSQVNARILELLTLIRP-----NAVALVDAFDFKDMTLGS 619 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHGG-----GHHHHHHTTCCCHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHHHH-----HHHHHhhccCCChHHhCc
Confidence 34566778888888752 33344455544322 111112223334444444443 355555554
Q ss_pred ----HhCC-HHHHHHHHhcCC
Q 001958 881 ----SSGN-YIMFFRLYKTAP 896 (991)
Q Consensus 881 ----a~GN-YvRFFrLyksAP 896 (991)
..|| |.++|...++.|
T Consensus 620 ~lg~~dg~vY~~l~~~~~~~p 640 (661)
T 2ddh_A 620 VLGRYDGNVYENLFEWAKKSP 640 (661)
T ss_dssp STTCTTCCHHHHHHHHHHHSG
T ss_pred hhhccCCHHHHHHHHHHHhCC
Confidence 2577 889999888655
No 26
>3t47_A SCIN-D; secreted, virulence, immune system; 1.30A {Staphylococcus aureus subsp} PDB: 3t48_A*
Probab=21.24 E-value=2.4e+02 Score=25.46 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=44.9
Q ss_pred HHHHHhhhHHhhhHhhcc----c---hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHc
Q 001958 772 KCDQLKSIRQDLTVQRIR----N---QLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAE 826 (991)
Q Consensus 772 I~DRLRSIRQDLTVQ~I~----n---eFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~e 826 (991)
|-|+||++--.+-|-.+. | .-+|.+.|..|..+|...|+..+-..-.+|..+|.+
T Consensus 13 la~eL~~Ll~~~nvn~LA~~sLn~YyKR~Imm~~y~AK~Alksknf~kMa~AK~~LE~IY~e 74 (81)
T 3t47_A 13 LVDQLHELIANTDLNKLSYLNLDAFQKRDILAAHYIAKSAIRTKNLDQMTKAKQRLESIYNS 74 (81)
T ss_dssp HHHHHHHHHHHTCTGGGGGGCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHhccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 678888876655555443 2 248999999999999999999999999999999986
No 27
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=21.09 E-value=1.2e+02 Score=30.45 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=44.9
Q ss_pred CCCCCChhHHHHHHHHhhhccCh-hhHHHHHHHHHHHHHHHhhcCCccccCCC
Q 001958 457 EPGTFPKSLCGYVERALARCKGD-AEIAASQAVMGEIIKKANSDGTLFSRDWD 508 (991)
Q Consensus 457 ~~~~wP~slr~YVqRaF~~c~~~-~dr~~~E~~LKe~It~a~~~gtl~TidWd 508 (991)
.+..+|+.+++.+++|+...-.. ++-.++...|++++......++..-.+|+
T Consensus 234 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~~~~~~ 286 (287)
T 1u59_A 234 CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHHHHH 286 (287)
T ss_dssp CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSCCCTTC
T ss_pred CCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCCccccC
Confidence 35679999999999999865554 57888999999999999999999999997
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.21 E-value=2e+02 Score=33.98 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHhhhHHhhhHhhccchhhHHHHHHHHHHHHhc------------CChhhHHHHHHHH
Q 001958 753 EVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIEN------------GDLPEYNQCQSQL 820 (991)
Q Consensus 753 ~VL~KTLdyLl~k~k~Y~FI~DRLRSIRQDLTVQ~I~neFTV~VYE~hARfaLea------------gDL~EFNQCqtQL 820 (991)
.-|++.+.||+.+...- | -++|++|.=|.=|+++ |+=||.-|-|-|+. =|++.|+.-|.||
T Consensus 113 ~ELRRrIqyLKekVdnQ--l-snIrvLQsnLedq~~k----IQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEK--V-QHIQLLQKNVRAQLVD----MKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 35778888887653322 1 4455555544444332 34455555555532 2889999999999
Q ss_pred HHHHHcC
Q 001958 821 KILYAEG 827 (991)
Q Consensus 821 k~LY~eg 827 (991)
..+-...
T Consensus 186 eQv~a~d 192 (562)
T 3ghg_A 186 EQVIAKD 192 (562)
T ss_dssp HHHHTTC
T ss_pred HHHhhcc
Confidence 9987653
Done!