Query 001959
Match_columns 991
No_of_seqs 245 out of 1408
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 1.2E-48 2.5E-53 477.4 29.7 292 671-991 4-334 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 1.1E-47 2.4E-52 474.7 28.9 281 672-991 3-312 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 1.6E-47 3.6E-52 467.5 29.6 291 673-991 1-332 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 3.8E-48 8.1E-53 432.3 7.8 273 682-991 3-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 7.1E-40 1.5E-44 383.1 21.4 246 669-990 4-297 (530)
6 COG0574 PpsA Phosphoenolpyruva 100.0 1.4E-36 3E-41 370.5 17.6 281 673-990 4-320 (740)
7 TIGR01828 pyru_phos_dikin pyru 100.0 1.8E-35 4E-40 362.5 21.6 245 672-990 2-337 (856)
8 PRK09279 pyruvate phosphate di 100.0 5.1E-33 1.1E-37 340.1 21.8 231 682-990 21-343 (879)
9 PRK05849 hypothetical protein; 99.9 1.4E-25 3.1E-30 272.3 18.3 196 682-991 5-216 (783)
10 PLN02784 alpha-amylase 98.9 1.8E-09 3.8E-14 132.0 5.4 65 1-67 142-209 (894)
11 PLN02784 alpha-amylase 98.8 4.2E-09 9.2E-14 128.7 5.7 65 1-70 331-396 (894)
12 PRK05849 hypothetical protein; 96.3 0.031 6.8E-07 70.2 13.2 175 453-634 571-780 (783)
13 PRK08296 hypothetical protein; 96.1 0.0054 1.2E-07 74.8 4.7 96 534-636 504-601 (603)
14 PF00391 PEP-utilizers: PEP-ut 95.5 0.0084 1.8E-07 54.5 2.5 68 558-630 8-78 (80)
15 PRK06241 phosphoenolpyruvate s 95.2 0.021 4.5E-07 73.0 5.2 93 535-636 773-868 (871)
16 PRK05865 hypothetical protein; 93.8 0.071 1.5E-06 67.8 5.4 94 535-637 741-837 (854)
17 PRK05878 pyruvate phosphate di 93.7 0.061 1.3E-06 65.1 4.2 96 532-634 353-451 (530)
18 TIGR01418 PEP_synth phosphoeno 93.6 0.063 1.4E-06 67.9 4.4 92 533-631 358-451 (782)
19 PRK06354 pyruvate kinase; Prov 93.4 0.059 1.3E-06 65.9 3.6 93 535-634 488-582 (590)
20 PRK06464 phosphoenolpyruvate s 93.0 0.062 1.3E-06 68.0 3.0 97 533-636 360-461 (795)
21 PRK09279 pyruvate phosphate di 93.0 0.071 1.5E-06 67.9 3.5 102 533-637 398-510 (879)
22 TIGR01828 pyru_phos_dikin pyru 92.2 0.11 2.4E-06 66.2 3.7 102 533-637 392-504 (856)
23 COG3848 Phosphohistidine swive 90.3 0.83 1.8E-05 43.8 6.6 96 533-636 6-104 (111)
24 PRK03955 hypothetical protein; 88.7 2.4 5.3E-05 42.5 8.9 96 533-636 6-128 (131)
25 PRK11377 dihydroxyacetone kina 87.8 0.54 1.2E-05 56.3 4.4 74 558-635 394-470 (473)
26 PRK11177 phosphoenolpyruvate-p 86.0 0.61 1.3E-05 57.3 3.6 78 558-639 152-232 (575)
27 TIGR01417 PTS_I_fam phosphoeno 83.4 0.91 2E-05 55.7 3.5 76 558-638 151-230 (565)
28 PF03423 CBM_25: Carbohydrate 81.4 2.2 4.8E-05 39.6 4.5 35 30-65 51-86 (87)
29 PRK11061 fused phosphoenolpyru 80.7 1.1 2.4E-05 56.6 3.0 76 558-639 319-398 (748)
30 COG3605 PtsP Signal transducti 76.7 3.9 8.5E-05 49.7 5.6 126 501-638 266-405 (756)
31 COG1080 PtsA Phosphoenolpyruva 72.2 3.9 8.4E-05 49.8 4.2 78 558-639 153-233 (574)
32 COG0574 PpsA Phosphoenolpyruva 67.5 2.4 5.2E-05 53.8 1.1 110 493-611 305-416 (740)
33 PF02786 CPSase_L_D2: Carbamoy 54.4 24 0.00052 38.1 5.8 44 941-989 131-178 (211)
34 COG5424 Pyrroloquinoline quino 38.2 39 0.00085 37.2 4.2 24 244-268 92-116 (242)
35 PF04190 DUF410: Protein of un 36.1 1.2E+02 0.0026 33.8 7.7 87 156-246 53-158 (260)
36 KOG3021 Predicted kinase [Gene 34.6 35 0.00076 37.6 3.2 43 151-195 95-137 (313)
37 KOG2122 Beta-catenin-binding p 29.4 3.9E+02 0.0084 36.9 11.4 136 377-522 375-522 (2195)
38 PF14475 Mso1_Sec1_bdg: Sec1-b 25.5 60 0.0013 26.5 2.3 20 223-242 14-33 (41)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.2e-48 Score=477.40 Aligned_cols=292 Identities=25% Similarity=0.386 Sum_probs=240.0
Q ss_pred ccccccccccC---cccccHHHHHHHHHHhcCC-CcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHH
Q 001959 671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA 746 (991)
Q Consensus 671 ~~~vl~l~e~~---~~~vGgKAanLa~L~~~~p-~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~ 746 (991)
.+++++|.++. ...+||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..++..++..++..
T Consensus 4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~~ 80 (795)
T PRK06464 4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVDA 80 (795)
T ss_pred CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHHH
Confidence 45788888776 3679999999999998655 58999999999999999999988 77778888777777667654
Q ss_pred H----HHHHHHHHcCCCcHHHHHHHHHHHHccC----------------C--CCCCCCCcc-------hHHHHHHHHHHH
Q 001959 747 L----REIRETVLQMKAPNQLVQELKTEMKSSG----------------M--PWPGDEGEQ-------RWEQAWMAIKKV 797 (991)
Q Consensus 747 L----~~Ir~~I~~~~lP~eL~~eL~~a~~ssg----------------~--~~~g~~G~~-------~~e~l~~AIK~V 797 (991)
+ ++||++|++.++|+++.++|.++++..+ . +..+|+|++ +.+++.+|||+|
T Consensus 81 l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v 160 (795)
T PRK06464 81 LAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKEC 160 (795)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHHH
Confidence 4 7999999999999999999998876421 1 234567764 479999999999
Q ss_pred HHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEE
Q 001959 798 WASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFV 875 (991)
Q Consensus 798 WAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~ 875 (991)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++|+++|||||+||+|.+ +||+|.
T Consensus 161 ~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~~ 239 (795)
T PRK06464 161 FASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEFY 239 (795)
T ss_pred HHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999986 899999
Q ss_pred EecCCCC--CccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHH
Q 001959 876 CKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSIL 953 (991)
Q Consensus 876 v~K~~~~--~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll 953 (991)
++|.+.. .+.++ ++.++.| +..+++. ..| +.|+ ..++++++.+ +.|+|+|++ +
T Consensus 240 v~~~~~~~~~~~i~---~~~i~~K-~~~~~~~--~~~-------~~~~-~~~~~~~~~~------~~~~L~~~~-----l 294 (795)
T PRK06464 240 VHKPTLKAGKPAIV---RRTLGSK-KIKMVYD--DGG-------EHGV-KTVDVPEEER------NRFSLTDEE-----V 294 (795)
T ss_pred Eeccccccccccee---eeecccc-ceeeeec--cCC-------CCce-eEEeCCHHHh------hccCCCHHH-----H
Confidence 9987632 11122 3444443 2223322 111 1222 3456665443 689999988 6
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEEC--CeEEEEeeccCC
Q 001959 954 SSIARAGCEIEELFGSAQDIEGVVRD--GKIYVVQTRPQM 991 (991)
Q Consensus 954 ~~La~lg~~IE~~fG~PQDIEwai~d--g~LyILQaRP~v 991 (991)
++|++++.+||++||+|||||||+++ |+|||||+||++
T Consensus 295 ~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit 334 (795)
T PRK06464 295 LELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET 334 (795)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence 99999999999999999999999987 999999999974
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=1.1e-47 Score=474.70 Aligned_cols=281 Identities=26% Similarity=0.421 Sum_probs=229.3
Q ss_pred cccccccccC---cccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHH--
Q 001959 672 RYAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA-- 746 (991)
Q Consensus 672 ~~vl~l~e~~---~~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~-- 746 (991)
++++++.++. ...|||||+||++|.+ .|++||+|||||+++|++||+.+ ++.+.|.+.+..++..+...
T Consensus 3 ~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~~ 76 (871)
T PRK06241 3 SYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQIG 76 (871)
T ss_pred ceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHHH
Confidence 4677777765 3679999999999999 79999999999999999999987 44444444444455445433
Q ss_pred --HHHHHHHHHcCCCcHHHHHHHHHHHHccCC---------------CCCCCCCcc-------hHHHHHHHHHHHHHcCC
Q 001959 747 --LREIRETVLQMKAPNQLVQELKTEMKSSGM---------------PWPGDEGEQ-------RWEQAWMAIKKVWASKW 802 (991)
Q Consensus 747 --L~~Ir~~I~~~~lP~eL~~eL~~a~~ssg~---------------~~~g~~G~~-------~~e~l~~AIK~VWAS~f 802 (991)
.++||++|++.++|+++.++|.++++.++. +..+|+|++ +.+++++|||+||||+|
T Consensus 77 ~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~~ 156 (871)
T PRK06241 77 EISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASLF 156 (871)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhcc
Confidence 379999999999999999999998875431 123567764 47999999999999999
Q ss_pred ChhHHHHHHhcCCCcccccceeEEEEeeccCeeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEecCCCC
Q 001959 803 NERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK 882 (991)
Q Consensus 803 seRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~K~~~~ 882 (991)
|+||+.||+++|++++++.|||+||+||++++|||+||+||.+++++.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 157 ~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~- 232 (871)
T PRK06241 157 TERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G- 232 (871)
T ss_pred CHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C-
Confidence 999999999999999999999999999999999999999999999999999999999999999998 899999982 2
Q ss_pred CccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHH
Q 001959 883 YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCE 962 (991)
Q Consensus 883 ~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~ 962 (991)
.++ ++.++.|. ..++... ++|+ ..+++++.. ++.|+|++++ +.+|+++|.+
T Consensus 233 --~i~---~~~i~~k~--~~~~~~~----------~gg~-~~~~~~~~~------~~~~~L~~~~-----~~~L~~l~~~ 283 (871)
T PRK06241 233 --KII---DKTIATKK--LAIYALK----------EGGT-ETKEIEPEQ------QKSQTLTDEQ-----ILELARLGRK 283 (871)
T ss_pred --ceE---EEeccccc--eEEEecC----------CCce-EEEECCHHH------hcCCCCCHHH-----HHHHHHHHHH
Confidence 222 34444431 1222221 2343 344555543 3679999987 6999999999
Q ss_pred HHHHcCCceEEEEEEECCeEEEEeeccCC
Q 001959 963 IEELFGSAQDIEGVVRDGKIYVVQTRPQM 991 (991)
Q Consensus 963 IE~~fG~PQDIEwai~dg~LyILQaRP~v 991 (991)
||++||+|||||||+++|+|||||+||++
T Consensus 284 ie~~~g~pqDIEw~~~~~~l~ilQaRPit 312 (871)
T PRK06241 284 IEAHFGCPQDIEWCLADGTFYILQSRPIT 312 (871)
T ss_pred HHHHcCCCcceEEEEECCEEEEEEcCCcc
Confidence 99999999999999999999999999984
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.6e-47 Score=467.54 Aligned_cols=291 Identities=26% Similarity=0.405 Sum_probs=234.7
Q ss_pred ccccccccC---cccccHHHHHHHHHHhcCC-CcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHHH-
Q 001959 673 YAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSAL- 747 (991)
Q Consensus 673 ~vl~l~e~~---~~~vGgKAanLa~L~~~~p-~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~L- 747 (991)
+++||.++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|.++++.++..+++.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777765 3679999999999997322 48999999999999999999987 777778777776666665443
Q ss_pred ---HHHHHHHHcCCCcHHHHHHHHHHHHcc----------------CC--C--CCCCCCcc-------hHHHHHHHHHHH
Q 001959 748 ---REIRETVLQMKAPNQLVQELKTEMKSS----------------GM--P--WPGDEGEQ-------RWEQAWMAIKKV 797 (991)
Q Consensus 748 ---~~Ir~~I~~~~lP~eL~~eL~~a~~ss----------------g~--~--~~g~~G~~-------~~e~l~~AIK~V 797 (991)
++||++|++.++|+++.++|..++... +. + ..+|+|++ +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999999887632 11 1 23566764 379999999999
Q ss_pred HHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEE
Q 001959 798 WASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFV 875 (991)
Q Consensus 798 WAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~ 875 (991)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999976 899999
Q ss_pred EecCCCCC--ccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHH
Q 001959 876 CKKNDLKY--PRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSIL 953 (991)
Q Consensus 876 v~K~~~~~--~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll 953 (991)
++|.+... ..++ ++.++.| +..+++. ..| +.+.....+++++.+ ++|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i~---~~~~~~k-~~~~~~~--~~g-------~~~~~~~~~~~~~~~------~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAIL---ERTLGSK-KIKMVYD--PDG-------GNVETKIVEVPEEER------DAFSLSDEE-----I 292 (782)
T ss_pred Eeccccccccccee---eeecccc-ceEEEEc--cCC-------CCcceEEEeCCHHHh------hccCCCHHH-----H
Confidence 99976320 0122 3444443 2223332 111 111233456655443 679999998 6
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEE--CCeEEEEeeccCC
Q 001959 954 SSIARAGCEIEELFGSAQDIEGVVR--DGKIYVVQTRPQM 991 (991)
Q Consensus 954 ~~La~lg~~IE~~fG~PQDIEwai~--dg~LyILQaRP~v 991 (991)
++|++++.+||++||+|||||||++ +|+|||||+||++
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPit 332 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPET 332 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeeccc
Confidence 9999999999999999999999999 8999999999974
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=3.8e-48 Score=432.31 Aligned_cols=273 Identities=33% Similarity=0.518 Sum_probs=195.4
Q ss_pred cccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHcC
Q 001959 682 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEED----HSALREIRETVLQM 757 (991)
Q Consensus 682 ~~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d----~~~L~~Ir~~I~~~ 757 (991)
...|||||+||++|++ .+++||+|||||+++|++||+.+ ++.+.+..+.+.+...+ .+..++||++|++.
T Consensus 3 ~~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 76 (327)
T PF01326_consen 3 ASLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSA 76 (327)
T ss_dssp HHHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEE
T ss_pred hHHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhC
Confidence 3568999999999997 78999999999999999999887 68888888766443222 23568999999999
Q ss_pred CCcHHHHHHHHHHHHccC---CC-------------CCCCCCcc-------hHHHHHHHHHHHHHcCCChhHHHHHHhcC
Q 001959 758 KAPNQLVQELKTEMKSSG---MP-------------WPGDEGEQ-------RWEQAWMAIKKVWASKWNERAFFSTRRVK 814 (991)
Q Consensus 758 ~lP~eL~~eL~~a~~ssg---~~-------------~~g~~G~~-------~~e~l~~AIK~VWAS~fseRA~~YRr~~G 814 (991)
++|+++.++|..++.+.+ .+ ..+|+|.+ ..++|++|||+||||+||+||+.||+++|
T Consensus 77 ~lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g 156 (327)
T PF01326_consen 77 PLPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRG 156 (327)
T ss_dssp T--HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcC
Confidence 999999999999876431 11 11334543 35999999999999999999999999999
Q ss_pred CCcccccceeEEEEeeccCeeEEEEeCCCCCCCCCe-EEEEEeccCCccccccccCCceeEEEecCCCCCccccCCCCCc
Q 001959 815 LDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSE-IYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKP 893 (991)
Q Consensus 815 i~~~~v~MAVLVQeMV~ad~SGVlfT~nP~tgd~~~-i~Ieav~GLGE~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ 893 (991)
++++++.|||+||+||++++|||+||+||.+|+++. ++|++++||||.||+|.+ +|++|++++.+.. +. .+.
T Consensus 157 ~~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~ 229 (327)
T PF01326_consen 157 IPDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---ERE 229 (327)
T ss_dssp -TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE
T ss_pred CChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhh
Confidence 999999999999999999999999999999999998 999999999999999987 8999999875431 11 122
Q ss_pred cccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHcCCceEE
Q 001959 894 IGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDI 973 (991)
Q Consensus 894 ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~IE~~fG~PQDI 973 (991)
++.+ +..++ .. .++|+ ..++++.. +...++|++++ +++|++++.+||++||+||||
T Consensus 230 ~~~k-~~~~~--~~---------~~~~~-~~~~~~~~------~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DI 285 (327)
T PF01326_consen 230 IGQK-SVQLV--PD---------EGGGL-EEVDVPEE------RQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDI 285 (327)
T ss_dssp -----HCCCC--CC---------CTTTE-ECCCHHHH------CHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEE
T ss_pred cCCc-eEEEE--Ec---------CCCce-EEEeCchh------hhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEE
Confidence 2221 11111 11 23443 34444432 34678888877 799999999999999999999
Q ss_pred EEEEECCeEEEEeeccCC
Q 001959 974 EGVVRDGKIYVVQTRPQM 991 (991)
Q Consensus 974 Ewai~dg~LyILQaRP~v 991 (991)
|||+++|+|||||+||++
T Consensus 286 Ew~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 286 EWAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEEETTEEEEEEEEE--
T ss_pred EEEEECCEEEEEEecccc
Confidence 999999999999999974
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=7.1e-40 Score=383.10 Aligned_cols=246 Identities=23% Similarity=0.264 Sum_probs=193.7
Q ss_pred ccccccccccccCc---ccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhc--hHHHHHHHHHHHhhcCCC-
Q 001959 669 FAGRYAITSDEFTG---ELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQILKQKLGEE- 742 (991)
Q Consensus 669 ~~~~~vl~l~e~~~---~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~--n~~L~~~I~~l~~~l~~~- 742 (991)
+..+++++|++... +++|||++||++|++ .++|||+|||||+.+|++|++.+. .+.++++|.+.++.++..
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 34578899988764 689999999999998 689999999999999999998763 345777766655433211
Q ss_pred --------ChH----------HHHHHHHHHHcCCCcHHHHHHHHHHHHccCC-CCC-----CCCCc-------------c
Q 001959 743 --------DHS----------ALREIRETVLQMKAPNQLVQELKTEMKSSGM-PWP-----GDEGE-------------Q 785 (991)
Q Consensus 743 --------d~~----------~L~~Ir~~I~~~~lP~eL~~eL~~a~~ssg~-~~~-----g~~G~-------------~ 785 (991)
++. .+.-+++.|+++.+|+++.++|.+.. |. .++ .|.|+ .
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~---g~~~~a~D~~~rF~~~y~~vv~~~~~~p~d 157 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEG---GDPDFAADTRRRFTEMYRRIVGSGSPPPDD 157 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhc---CCchhhhhhhhhHHHHHHHHhccCCCCCCC
Confidence 211 11239999999999999999997642 21 111 11111 2
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEeCCCCCCCCCeEEEEEeccCC
Q 001959 786 RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVVKGLG 860 (991)
Q Consensus 786 ~~e~l~~AIK~VWAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad-----~SGVlfT~nP~tgd~~~i~Ieav~GLG 860 (991)
.+++|..|||.||+|+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|++..+.+.+++|+|
T Consensus 158 p~~qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlG 236 (530)
T PRK05878 158 PYEQLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQG 236 (530)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCC
Confidence 3699999999999999999999999999999755 8999999999765 479999999999998888888899999
Q ss_pred ccccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCC
Q 001959 861 ETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD 940 (991)
Q Consensus 861 E~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~ 940 (991)
|.||+|.+ +|+.|.+.+. ..
T Consensus 237 e~vVsG~~-~p~~~~~~~~-----------------------------------------------------------~~ 256 (530)
T PRK05878 237 EDVVSGLV-DVAPITALRD-----------------------------------------------------------EQ 256 (530)
T ss_pred HHHhcCCc-CCcchhhhcc-----------------------------------------------------------cC
Confidence 99999975 4543322110 00
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECCeEEEEeeccC
Q 001959 941 RLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 990 (991)
Q Consensus 941 p~LtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEwai~dg~LyILQaRP~ 990 (991)
| ..+++|++++.+||++||.||||||+|++|+|||||+||.
T Consensus 257 p---------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 257 P---------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred H---------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1 1268999999999999999999999999999999999995
No 6
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=370.48 Aligned_cols=281 Identities=26% Similarity=0.401 Sum_probs=224.0
Q ss_pred ccccccccC---cccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHHH--
Q 001959 673 YAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSAL-- 747 (991)
Q Consensus 673 ~vl~l~e~~---~~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~L-- 747 (991)
++.++.+.+ ..++|||++||++|.+ .|++||+||||++.+|..|++.+ ++.+.+.+.+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 445555543 4899999999999999 79999999999999999999988 777777777665554443333
Q ss_pred --HHHHHHHHcCCCcHHHHHHHHHHHHcc---C----------------CCCCCCCCcc-------hHHHHHHHHHHHHH
Q 001959 748 --REIRETVLQMKAPNQLVQELKTEMKSS---G----------------MPWPGDEGEQ-------RWEQAWMAIKKVWA 799 (991)
Q Consensus 748 --~~Ir~~I~~~~lP~eL~~eL~~a~~ss---g----------------~~~~g~~G~~-------~~e~l~~AIK~VWA 799 (991)
..++..|+..++|+++.+++.+++... + .+..+|+|++ ..++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 689999999999999999999988752 1 1334677753 57999999999999
Q ss_pred cCCChhHHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEe
Q 001959 800 SKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCK 877 (991)
Q Consensus 800 S~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~ 877 (991)
|+||+||+.||.++|+++..+.|||+||+||.++ .|||+||+||.||..+.+.+++++||||.+|+|.+ +||.|.+.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999998 99999999
Q ss_pred cCCCCCccccCCCCCccccccceeEEEecCCCCCccccccCCcc-cccccCchhhHhhhcccCCcccCcccchHHHHHHH
Q 001959 878 KNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGL-YDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSI 956 (991)
Q Consensus 878 K~~~~~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl-~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~L 956 (991)
|++. ... ..++|. ..+++.... +.+. .+..+++... .....++|.. +.+|
T Consensus 237 k~~~-~~~--~~~~~~------~~~i~~~~~---------~e~~~~~~~ev~~~~------~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL-VEK--ALPSKL------IKLIYDADK---------LEGHRARIEEIEDEF------TDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch-hhh--hhhHHH------HHHHHHhhc---------ccceeeeeccCChHH------hhhhhccHHH-----HHHH
Confidence 9753 000 112221 122222211 1111 1222333221 2456777776 7999
Q ss_pred HHHHHHHHHHcCCceEEEEEEECCeEEEEeeccC
Q 001959 957 ARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 990 (991)
Q Consensus 957 a~lg~~IE~~fG~PQDIEwai~dg~LyILQaRP~ 990 (991)
++++.+||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999998 9999999996
No 7
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=1.8e-35 Score=362.51 Aligned_cols=245 Identities=22% Similarity=0.301 Sum_probs=188.9
Q ss_pred cccccccccCc---ccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhc--hHHHHHHHHHHHhhcC------
Q 001959 672 RYAITSDEFTG---ELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQILKQKLG------ 740 (991)
Q Consensus 672 ~~vl~l~e~~~---~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~--n~~L~~~I~~l~~~l~------ 740 (991)
++++++++.+. .++|||++||++|.+ .++|||+||+||+.+|+.|++.+. ..+++++|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 46788887654 689999999999998 689999999999999999999873 3457777666554443
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCcHHHHHHHHH-------HHHc-------cC-----CC---C-------
Q 001959 741 ---EEDHS----------ALREIRETVLQMKAPNQLVQELKT-------EMKS-------SG-----MP---W------- 778 (991)
Q Consensus 741 ---~~d~~----------~L~~Ir~~I~~~~lP~eL~~eL~~-------a~~s-------sg-----~~---~------- 778 (991)
..++. .+..+++.|+++.+|++++++|.+ ++.+ .| .+ |
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 12221 123799999999999999999987 3332 11 11 0
Q ss_pred ------C---C------------CCCc-----------chHHHHHHHHHHHHHcCCChhHHHHHHhcCCCcccccceeEE
Q 001959 779 ------P---G------------DEGE-----------QRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLV 826 (991)
Q Consensus 779 ------~---g------------~~G~-----------~~~e~l~~AIK~VWAS~fseRA~~YRr~~Gi~~~~v~MAVLV 826 (991)
. + |.|+ ..+++|..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 0 0 1111 1468999999999999999999999999999997 8999999
Q ss_pred EEeeccC-----eeEEEEeCCCCCCCCCeEEEEEe-ccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccce
Q 001959 827 QEIINAD-----YAFVIHTTNPSSGDSSEIYAEVV-KGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 900 (991)
Q Consensus 827 QeMV~ad-----~SGVlfT~nP~tgd~~~i~Ieav-~GLGE~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ig~~~~~ 900 (991)
|+||.++ .|||+||+||.||.+ .+++++. .|+||.+|+|.+ +|+.|...
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~-~~~g~~~i~a~ge~vVsG~~-tp~~~~~~----------------------- 292 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEK-GLFGEFLINAQGEDVVAGIR-TPQPITAM----------------------- 292 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCC-cceEEEEEcCCCchhccccc-CcHHHHHh-----------------------
Confidence 9999765 689999999999986 3666655 489999999865 33321110
Q ss_pred eEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECC
Q 001959 901 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDG 980 (991)
Q Consensus 901 ~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEwai~dg 980 (991)
. .+.+ ..+++|++++.+||++||.|||||||+++|
T Consensus 293 ------------------------------~----------~~~p-----~~~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 293 ------------------------------E----------ADMP-----DVYKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred ------------------------------h----------hcCh-----HHHHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 0 0011 126899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 001959 981 KIYVVQTRPQ 990 (991)
Q Consensus 981 ~LyILQaRP~ 990 (991)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=5.1e-33 Score=340.09 Aligned_cols=231 Identities=25% Similarity=0.408 Sum_probs=168.3
Q ss_pred cccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhc--hHHHHHHHHH----HHhhcC----CCC-h------
Q 001959 682 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--NQAVAEKLQI----LKQKLG----EED-H------ 744 (991)
Q Consensus 682 ~~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~--n~~L~~~I~~----l~~~l~----~~d-~------ 744 (991)
.+++|||++||++|.+ .|+|||+||+||+.+|++|++.+. .+++++++.. +....+ ..+ +
T Consensus 21 ~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~~~g~~fg~~~~PLLvSVR 97 (879)
T PRK09279 21 KDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEELTGKKFGDPENPLLVSVR 97 (879)
T ss_pred HhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHHHhCcccCCCCCceeEEEe
Confidence 4899999999999999 799999999999999999998762 3455555443 332211 100 0
Q ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHHH--------------------------------------------------
Q 001959 745 ----SALREIRETVLQMKAPNQLVQELKTE-------------------------------------------------- 770 (991)
Q Consensus 745 ----~~L~~Ir~~I~~~~lP~eL~~eL~~a-------------------------------------------------- 770 (991)
...--+.+.|+++-+.++.+..|.+.
T Consensus 98 Sga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~~~~~~k~~~~~~~~~~l~ 177 (879)
T PRK09279 98 SGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEEILEELKEKKGVKLDTDLT 177 (879)
T ss_pred cCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCCCccCCC
Confidence 00112333344444433333333321
Q ss_pred ----------H----Hc-cCCCCCCCCCcchHHHHHHHHHHHHHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC--
Q 001959 771 ----------M----KS-SGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-- 833 (991)
Q Consensus 771 ----------~----~s-sg~~~~g~~G~~~~e~l~~AIK~VWAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad-- 833 (991)
| .. .|.+||.++ +++|..||+.||+|+||+||+.||+.+|++++ ..|||+||+||.++
T Consensus 178 ~~~l~~l~~~~k~~~~~~~g~~fp~dp----~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~g~AV~VQ~MV~gn~~ 252 (879)
T PRK09279 178 AEDLKELVERYKEIVKEETGKPFPQDP----YEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-WGTAVNVQAMVFGNMG 252 (879)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-cCceEEEEeccccCCC
Confidence 1 11 133444443 89999999999999999999999999999986 89999999999776
Q ss_pred ---eeEEEEeCCCCCCCCCeEEEEE-eccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEEecCCC
Q 001959 834 ---YAFVIHTTNPSSGDSSEIYAEV-VKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSN 909 (991)
Q Consensus 834 ---~SGVlfT~nP~tgd~~~i~Iea-v~GLGE~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ig~~~~~~~i~~s~sn 909 (991)
.|||+||+||.||++ .++++. +.|+||.||+|.+ +|+.|. .
T Consensus 253 ~~s~SGV~FTrdP~TG~~-~~~Ge~l~~aqGedVVsG~~-tp~~~~----~----------------------------- 297 (879)
T PRK09279 253 EDSGTGVAFTRNPSTGEK-KLYGEFLINAQGEDVVAGIR-TPQPIP----S----------------------------- 297 (879)
T ss_pred CCcceEEEEeCCCCCCCC-ceeEEEecCCCChhhhcCcc-CcchhH----H-----------------------------
Confidence 599999999999987 556666 4799999999875 443220 0
Q ss_pred CCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEEECCeEEEEeecc
Q 001959 910 GEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRP 989 (991)
Q Consensus 910 Gedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEwai~dg~LyILQaRP 989 (991)
.++ .. +..+++|++++.+||++||.||||||+|++|+|||||+||
T Consensus 298 --------------------l~~----------~~-----p~~~~~L~~~~~~LE~~f~~pqDIEftie~g~L~iLQtRp 342 (879)
T PRK09279 298 --------------------LEE----------AM-----PEVYAELVDIAKKLEKHYRDMQDIEFTIERGKLYMLQTRN 342 (879)
T ss_pred --------------------Hhh----------cC-----hHHHHHHHHHHHHHHHHhCCCeeeEEEEECCEEEEEEeCC
Confidence 000 00 1236899999999999999999999999999999999999
Q ss_pred C
Q 001959 990 Q 990 (991)
Q Consensus 990 ~ 990 (991)
.
T Consensus 343 ~ 343 (879)
T PRK09279 343 G 343 (879)
T ss_pred c
Confidence 4
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=272.30 Aligned_cols=196 Identities=21% Similarity=0.231 Sum_probs=139.3
Q ss_pred cccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCcH
Q 001959 682 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPN 761 (991)
Q Consensus 682 ~~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~L~~Ir~~I~~~~lP~ 761 (991)
.-.+|+||++|+.|++++ .+++||+++++|...+.+ .. +.+. +.|+..+ +.
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~~--~~~~------------------~~i~~~~-----~~ 55 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---NK--DKVL------------------EEIQNSF-----PA 55 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---CH--HHHH------------------HHHHHhc-----CC
Confidence 457899999999999976 589999999998764322 11 1111 1122111 00
Q ss_pred HHHHHHHHHHHccCC----CCCCCCCcc---------hHHHHHHHHHHHHHcCCChhHHHHHHhcCCCcccccceeEEEE
Q 001959 762 QLVQELKTEMKSSGM----PWPGDEGEQ---------RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQE 828 (991)
Q Consensus 762 eL~~eL~~a~~ssg~----~~~g~~G~~---------~~e~l~~AIK~VWAS~fseRA~~YRr~~Gi~~~~v~MAVLVQe 828 (991)
-.-++|||+. +..+++|++ ..+++..||++||||+++ ++ .|||+||+
T Consensus 56 -----~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~ 115 (783)
T PRK05849 56 -----DKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQP 115 (783)
T ss_pred -----CeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEe
Confidence 0224566653 234566664 246999999999999776 22 38999999
Q ss_pred eec-cCeeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEecCCCCCccccCCCCCccccccceeEEEecC
Q 001959 829 IIN-ADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSD 907 (991)
Q Consensus 829 MV~-ad~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ig~~~~~~~i~~s~ 907 (991)
||. +..|||+||+||.+|++..+....++|+||.||+|.. +|+.+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998755444444899999999975 54444432210
Q ss_pred CCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHcCC-ceEEEEEE-ECCeEEEE
Q 001959 908 SNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGS-AQDIEGVV-RDGKIYVV 985 (991)
Q Consensus 908 snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~IE~~fG~-PQDIEwai-~dg~LyIL 985 (991)
.++++++. +++|++++++||++||+ |||||||+ ++|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01222222 68999999999999986 99999999 59999999
Q ss_pred eeccCC
Q 001959 986 QTRPQM 991 (991)
Q Consensus 986 QaRP~v 991 (991)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999963
No 10
>PLN02784 alpha-amylase
Probab=98.86 E-value=1.8e-09 Score=131.96 Aligned_cols=65 Identities=34% Similarity=0.595 Sum_probs=60.8
Q ss_pred CCCCcccc-cccccccccccCCCCCccceeEEEEEecCCccccceEEEec--CCceeecCCCceEEEccc
Q 001959 1 MPAGSVSL-SGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS--GGNWIKNKGSDFYVDFSY 67 (991)
Q Consensus 1 ~p~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~~~--~~~w~~~~~~d~~~~~~~ 67 (991)
+||||+.. ++||||||+..+..+..+++| |+|+++ +.|.||+|||++ +|+|||++|+||+|+|..
T Consensus 142 ~PpgS~~~~~~A~eT~f~~~s~~~~~~~v~-iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~ 209 (894)
T PLN02784 142 RPPGSIAIKDYAIETPLKKSSEGDSFYEVT-IDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVD 209 (894)
T ss_pred CCCCcEEecCeEEeccccccccCCcceeEE-EEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEeccc
Confidence 58999988 899999999999998999998 899986 999999999998 899999999999999985
No 11
>PLN02784 alpha-amylase
Probab=98.79 E-value=4.2e-09 Score=128.70 Aligned_cols=65 Identities=25% Similarity=0.439 Sum_probs=56.8
Q ss_pred CCCCcccccccccccccccCCCCCccceeEEEEEecCCccccceEEEec-CCceeecCCCceEEEcccccc
Q 001959 1 MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS-GGNWIKNKGSDFYVDFSYESK 70 (991)
Q Consensus 1 ~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~fv~~~-~~~w~~~~~~d~~~~~~~~~~ 70 (991)
+|+||+..++||||||...++.+.+++. +++ ++.|.||+|||++ +|+|||++|+||||+|...++
T Consensus 331 ~P~~sv~~~kA~eT~~~~~~~~~~~~~~--~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~ 396 (894)
T PLN02784 331 PPETSLFKNKALQTMLQQKDDGNGSSGL--FSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSS 396 (894)
T ss_pred CCCcceecccccccccccccCCCcceEE--Eec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhc
Confidence 4789999999999999999888777764 444 7899999999998 899999999999999986544
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.34 E-value=0.031 Score=70.19 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHh--hhHHHH----HHhhcchHHHHhhhcCccchhhccccHHHHhhhhhHH----HHHHHhhhhHH
Q 001959 453 ALFAKSVLDRTRLALA--SKADWY----QKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAA----LSLLLNRLDPV 522 (991)
Q Consensus 453 AL~lkA~ldr~r~~~~--~~~~~~----~~~~~~~a~~lG~~lg~e~~~v~~F~Ee~IR~~~~f~----lS~l~~~l~~~ 522 (991)
...++.+++++|..++ +++-.. ....-.....+|..+|+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888887 333222 2233333446888889877777666777676532110 11222111111
Q ss_pred HHHh--------------hC---------CCCceEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCC-CCCCC-CC
Q 001959 523 LRKT--------------AS---------LGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVK-GEEEI-PD 577 (991)
Q Consensus 523 lr~~--------------a~---------~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~-G~eeI-p~ 577 (991)
.++. .. ...=..++||.+.|.++++..-. . ....-.|||+..++ |-.-+ ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1110 00 00001379999999999987642 1 12244699988877 11222 12
Q ss_pred CceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCce
Q 001959 578 GTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 578 ~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
+++||||..-+ ..||.+++||..|||-+.--.....+.+ .+|+.|.+......|
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 69999998764 8999999999999999774322112222 258888887765444
No 13
>PRK08296 hypothetical protein; Provisional
Probab=96.10 E-value=0.0054 Score=74.76 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=70.8
Q ss_pred EeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001959 534 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 611 (991)
Q Consensus 534 ~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 611 (991)
.+|||.+.|.+++|.+..+.. ....+.|||+...+ -+.+| ..+.||||..- ..+||.++.||+.|||-+..-..
T Consensus 504 ~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~td-P~~~~~~~~~~GiVte~G-g~~SHaAIvARe~GIPaVvgv~~ 579 (603)
T PRK08296 504 AASPGVVEGPARVIRSADELS--EVQEGEILVCPVTS-PSWAPIFAKIKATVTDIG-GVMSHAAIVCREYGLPAVVGTGN 579 (603)
T ss_pred ecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCC-HHHHHHHHHheEEEEecC-CCcchHHHHHHHcCCCEEEcCcc
Confidence 358999999999998876643 24567899988876 12233 37999999875 48999999999999998876542
Q ss_pred hhhhHhhhcCCCeEEEeecCCceEE
Q 001959 612 NILADLQSNEGKMLHLKPTSADIAY 636 (991)
Q Consensus 612 ~~~~~l~~l~Gk~V~l~vs~~~~~l 636 (991)
... +-.+|..|.+..+...|.+
T Consensus 580 -at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 580 -ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred -Hhh--hcCCCCEEEEECCCCEEEE
Confidence 111 2247999998887755543
No 14
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.55 E-value=0.0084 Score=54.47 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.8
Q ss_pred CCCCeEEEEecCCCCCCCC---CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeec
Q 001959 558 YDRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPT 630 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~eeIp---~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs 630 (991)
...++|||++...-. +++ .+++||||..- .++||.+++||.+|||.+..-.. .... -.+|.+|.+..+
T Consensus 8 ~~~~~IlV~~~~~p~-~~~~~~~~~~Giv~~~G-g~~SH~aIlAr~~giP~ivg~~~-~~~~--i~~g~~v~lDg~ 78 (80)
T PF00391_consen 8 LPEGVILVAEELTPS-DLALDLQRVAGIVTEEG-GPTSHAAILARELGIPAIVGVGD-ATEA--IKDGDWVTLDGN 78 (80)
T ss_dssp TTSTEEEEESS--TT-CHHSHHTTSSEEEESSS-STTSHHHHHHHHTT-EEEESTTT-HHHH--SCTTEEEEEETT
T ss_pred CCCCEEEEECCCCHH-HHhcchhheEEEEEEcC-CccchHHHHHHHcCCCEEEeecc-Hhhc--cCCCCEEEEECC
Confidence 456789999987733 333 48999999886 48899999999999999987652 2222 235888877544
No 15
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.19 E-value=0.021 Score=73.02 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=68.6
Q ss_pred eeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecChh
Q 001959 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (991)
Q Consensus 535 ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~ 612 (991)
+++|.+.|.++++.+..+. ......|||+...++ ...| ..+.||||.. ...+||.+|.||..|||-++.-..
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p-~~~~~~~~~~giv~~~-Gg~~sH~aIvare~gIPavv~~~~- 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDP-GWTPLFVSIKGLVTEV-GGLMTHGAVIAREYGIPAVVGVEN- 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCH-HHHHHHHhceEEEEcC-CCcchHHHHHHHhcCCCEEEcccc-
Confidence 6899999999998876553 244668999988874 2333 3799997774 558999999999999998874432
Q ss_pred hhhHhhhc-CCCeEEEeecCCceEE
Q 001959 613 ILADLQSN-EGKMLHLKPTSADIAY 636 (991)
Q Consensus 613 ~~~~l~~l-~Gk~V~l~vs~~~~~l 636 (991)
..+.+ +|..|.+......+.+
T Consensus 847 ---~~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 ---ATKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred ---HHhhcCCCCEEEEECCCCEEEE
Confidence 23333 7999999877655543
No 16
>PRK05865 hypothetical protein; Provisional
Probab=93.81 E-value=0.071 Score=67.77 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=69.1
Q ss_pred eeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecChh
Q 001959 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (991)
Q Consensus 535 ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~ 612 (991)
++||.+.|++++|.. .+ ......+.|||+...+ -..+| ..+.||||..- ..+||.++.||..|||-+.+-..
T Consensus 741 ~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~td-p~~~~~~~~a~giVte~G-g~~SH~AIvARe~gIPaVvgv~~- 814 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTD-VGYTAAFCYAAAVVTELG-GPMSHAAVVAREFGFPCVVDAQG- 814 (854)
T ss_pred ccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCC-HHHHHHHHHheEEEeccC-CCccHHHHHHHHcCCCEEEcccc-
Confidence 488899999999972 22 1235677899988876 11222 37999999865 48999999999999999986542
Q ss_pred hhhHhhh-cCCCeEEEeecCCceEEE
Q 001959 613 ILADLQS-NEGKMLHLKPTSADIAYS 637 (991)
Q Consensus 613 ~~~~l~~-l~Gk~V~l~vs~~~~~l~ 637 (991)
..+. .+|+.|.+..+...+.+-
T Consensus 815 ---at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 815 ---ATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred ---HhhcCCCCCEEEEECCCcEEEEe
Confidence 2222 389999999887666653
No 17
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=93.65 E-value=0.061 Score=65.05 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=65.4
Q ss_pred ceEeeeeEEEEEEEE-ecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEe
Q 001959 532 WQVISPVEVFGYVAV-VDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATC 608 (991)
Q Consensus 532 wq~ispG~A~G~L~~-V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~ 608 (991)
=..++||.+.|+++. .++..+.. ....+.|||+.... -++++ ..+.||||..-. ..||.++.||++|||-+..
T Consensus 353 G~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~VvG 428 (530)
T PRK05878 353 GLPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVVG 428 (530)
T ss_pred CeeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEEc
Confidence 345799999999864 22222211 23456799887766 23344 369999998765 8999999999999999985
Q ss_pred cChhhhhHhhhcCCCeEEEeecCCce
Q 001959 609 FDPNILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 609 ~d~~~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
-.. ....+ .+|..|.+......|
T Consensus 429 ~~~-~~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 429 CGA-GVAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred ccc-hhhcc--CCCCEEEEECCCCEE
Confidence 442 22223 469999887765433
No 18
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.60 E-value=0.063 Score=67.90 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=69.1
Q ss_pred eEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001959 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 610 (991)
..++||.+.|.++++....+.. .+..+.|||++...- +++| ..+.||||..-. ..||.++.||+.|||-+..-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 4579999999999999877754 356677999877662 3344 389999998764 899999999999999876533
Q ss_pred hhhhhHhhhcCCCeEEEeecC
Q 001959 611 PNILADLQSNEGKMLHLKPTS 631 (991)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l~vs~ 631 (991)
+....+ .+|..|.+....
T Consensus 434 -~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 434 -DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred -chhhcc--cCCCEEEEEcCC
Confidence 222222 369999988876
No 19
>PRK06354 pyruvate kinase; Provisional
Probab=93.41 E-value=0.059 Score=65.90 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=68.7
Q ss_pred eeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecChh
Q 001959 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (991)
Q Consensus 535 ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~ 612 (991)
.+||.+.|.++++....+. ..+..+.|||++..+- +.+| ..+.||||..-+ ..||.++.||.+|||-+..-..
T Consensus 488 as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~~- 562 (590)
T PRK06354 488 IGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVKN- 562 (590)
T ss_pred cccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEeccc-
Confidence 4789999999998876553 3466788999988773 3344 479999998654 8999999999999999986543
Q ss_pred hhhHhhhcCCCeEEEeecCCce
Q 001959 613 ILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 613 ~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
... .-.+|..|.+......+
T Consensus 563 ~~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 563 ATS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred hhh--ccCCCCEEEEECCCCEE
Confidence 222 12368888887765333
No 20
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.00 E-value=0.062 Score=68.02 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred eEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001959 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 610 (991)
+.++||.++|.++++....+.. .+..+.|||++...= ++++ ..+.||||..- ...||.++.||++|||-+.=-.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~G-g~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRG-GRTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCC-CCcchHHHHHHHcCCCEEEccC
Confidence 4568999999999998876654 245678999877661 3343 37999999876 4789999999999999765221
Q ss_pred hhhhhHhhhcCCCeEEE---eecCCceEE
Q 001959 611 PNILADLQSNEGKMLHL---KPTSADIAY 636 (991)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l---~vs~~~~~l 636 (991)
+....+ .+|..|.+ ......+..
T Consensus 436 -~~~~~l--~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 436 -NATEVL--KDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred -ccccee--cCCCEEEEEeccCCCcEEEe
Confidence 122222 36999988 554433333
No 21
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=93.00 E-value=0.071 Score=67.86 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred eEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001959 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 610 (991)
...|||.|+|++++...-..-. ....++.|||..... -++++ ..+.||||..-. ..||.+|.||++|||-++.-.
T Consensus 398 ~~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et~-P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~ 474 (879)
T PRK09279 398 LPASPGAATGKIVFTADEAEAL-AARGEKVILVRPETS-PEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAG 474 (879)
T ss_pred cccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCCC-HHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccC
Confidence 3469999999997743322211 123466788877665 24555 258899998664 899999999999999987543
Q ss_pred hhhhh---------HhhhcCCCeEEEeecCCceEEE
Q 001959 611 PNILA---------DLQSNEGKMLHLKPTSADIAYS 637 (991)
Q Consensus 611 ~~~~~---------~l~~l~Gk~V~l~vs~~~~~l~ 637 (991)
...++ .-.-.+|..|.+..+...|...
T Consensus 475 ~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g 510 (879)
T PRK09279 475 ALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLG 510 (879)
T ss_pred cceEecccCEEEECCEEecCCCEEEEECCCCEEEEC
Confidence 21111 1122368888888876555544
No 22
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=92.18 E-value=0.11 Score=66.23 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=67.7
Q ss_pred eEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCC--CCceEEEcCCCCCcccceeeecccCCcceeEecC
Q 001959 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp--~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d 610 (991)
...+||.+.|++++..+-.... .....+.|||..... -++++ ..+.||||..-. ..||.++.||++|||-++.-.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~ 468 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCE 468 (856)
T ss_pred cccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEccc
Confidence 3469999999998763322111 123456788887765 23444 368999998765 899999999999999987543
Q ss_pred hhhhh---------HhhhcCCCeEEEeecCCceEEE
Q 001959 611 PNILA---------DLQSNEGKMLHLKPTSADIAYS 637 (991)
Q Consensus 611 ~~~~~---------~l~~l~Gk~V~l~vs~~~~~l~ 637 (991)
...++ .-.-.+|..|.+..+...+...
T Consensus 469 ~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g 504 (856)
T TIGR01828 469 ELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLG 504 (856)
T ss_pred ccccccccceeeeCCeEecCCCEEEEECCCCEEEEC
Confidence 22211 1122468888888776555443
No 23
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=90.33 E-value=0.83 Score=43.76 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=68.7
Q ss_pred eEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCCCCCCC---CceEEEcCCCCCcccceeeecccCCcceeEec
Q 001959 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPD---GTVAVLTADMPDVLSHVSVRARNCKVCFATCF 609 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~eeIp~---~VaGVit~~~~~~LSHv~VrARn~gVp~at~~ 609 (991)
|.|-.|.+.|+.++-++-.+... .+..-.||++...+ .|+=| ...||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std--~d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTD--ADFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred eeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCC--hhhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 66788899999988887666443 24566799999988 55442 68899998876 88999999999999999854
Q ss_pred ChhhhhHhhhcCCCeEEEeecCCceEE
Q 001959 610 DPNILADLQSNEGKMLHLKPTSADIAY 636 (991)
Q Consensus 610 d~~~~~~l~~l~Gk~V~l~vs~~~~~l 636 (991)
+. +.+.+ .+|..|.+..+- ++.+
T Consensus 82 ~~-at~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KK-ATQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cc-hhhhc--cCCCEEEEeccc-ceEE
Confidence 42 11211 267777665542 4444
No 24
>PRK03955 hypothetical protein; Reviewed
Probab=88.67 E-value=2.4 Score=42.48 Aligned_cols=96 Identities=16% Similarity=0.286 Sum_probs=63.8
Q ss_pred eEeeeeEEEEEEEEeccccc----ccccC----------CC---CCeEEEEecCCCCCCCC--------C--CceEEEcC
Q 001959 533 QVISPVEVFGYVAVVDELLA----VQDKS----------YD---RPTILLARRVKGEEEIP--------D--GTVAVLTA 585 (991)
Q Consensus 533 q~ispG~A~G~L~~V~~l~~----~~~~~----------~~---~p~Ill~~~v~G~eeIp--------~--~VaGVit~ 585 (991)
..+++|.+.|++.+.++--. +.+.+ +. .-.||++....|---=+ - .=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988765221 11111 01 23588888877541100 0 12789999
Q ss_pred CCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCceEE
Q 001959 586 DMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAY 636 (991)
Q Consensus 586 ~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~~l 636 (991)
..-++|||-++-| +||.+.-.+ .+.|+ +|.+|++..+...+.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 9999999999999 999998655 33332 8999988765544443
No 25
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=87.81 E-value=0.54 Score=56.34 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=48.8
Q ss_pred CCCCeEEEEecCCCCC--CCC-CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCce
Q 001959 558 YDRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~e--eIp-~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
.+.|.|||++...=-+ .++ .+|.||+|..- ...||.+++||.+|||-++=-.. .+. .-.+|..|-+......+
T Consensus 394 ~~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~G-G~TSHtAILARslgIPaVvg~~~-~~~--~~~~G~~vilDG~~G~v 469 (473)
T PRK11377 394 FNSPTILLAENIYPSTVLQLDPAVVKGICLSAG-SPLSHSAIIARELGIGWICQQGE-KLY--AIQPEETLTLDVKTQRL 469 (473)
T ss_pred CCCCEEEEECCCCHHHHHhcCHhHeEEEEECCC-CcccHHHHHHHHcCCCEEEcchh-hHh--hccCCCEEEEECCCCEE
Confidence 3568899877665000 111 27999999876 48899999999999997653221 222 22368888887765444
Q ss_pred E
Q 001959 635 A 635 (991)
Q Consensus 635 ~ 635 (991)
.
T Consensus 470 ~ 470 (473)
T PRK11377 470 N 470 (473)
T ss_pred E
Confidence 3
No 26
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=86.03 E-value=0.61 Score=57.27 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCCCCC--CCC-CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCce
Q 001959 558 YDRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~e--eIp-~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
+..|.|||++...-.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|+.|.+......+
T Consensus 152 ~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v 227 (575)
T PRK11177 152 IQEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQI 227 (575)
T ss_pred CCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEE
Confidence 4567888888776211 111 379999998765 789999999999999776443 22222 2369999988877666
Q ss_pred EEEec
Q 001959 635 AYSVV 639 (991)
Q Consensus 635 ~l~~~ 639 (991)
.+.+.
T Consensus 228 ~~~P~ 232 (575)
T PRK11177 228 YVNPT 232 (575)
T ss_pred EECCC
Confidence 66553
No 27
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=83.43 E-value=0.91 Score=55.67 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCCCeEEEEecCCCCCCCC----CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCc
Q 001959 558 YDRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSAD 633 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~eeIp----~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~ 633 (991)
+..|.|||++...= +++. .++.||+|..-. ..||.++.||++|||-+..-.. .... -.+|..|.+......
T Consensus 151 ~~~~~IlVa~~l~P-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~-~~~~--~~~G~~v~vDg~~G~ 225 (565)
T TIGR01417 151 IQDEVILVAEDLTP-SETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKS-VTSQ--VKNGDTVIIDGVKGI 225 (565)
T ss_pred CCCCeEEEecCCCH-HHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchh-HHhh--CCCCCEEEEECCCCE
Confidence 35678888876651 2332 369999998764 8999999999999997765432 2222 236999999888766
Q ss_pred eEEEe
Q 001959 634 IAYSV 638 (991)
Q Consensus 634 ~~l~~ 638 (991)
+.+.+
T Consensus 226 v~~~P 230 (565)
T TIGR01417 226 VIFNP 230 (565)
T ss_pred EEeCC
Confidence 66654
No 28
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=81.39 E-value=2.2 Score=39.57 Aligned_cols=35 Identities=31% Similarity=0.773 Sum_probs=25.4
Q ss_pred EEEEEecCCccccceEEEecC-CceeecCCCceEEEc
Q 001959 30 SIEIEIEEEGYVGMPFVLQSG-GNWIKNKGSDFYVDF 65 (991)
Q Consensus 30 ~~~~~~~~~~~~g~~fv~~~~-~~w~~~~~~d~~~~~ 65 (991)
+.+|++|.+.. .|.||+++| +.|=+|+|.||++++
T Consensus 51 ~~tv~vP~~a~-~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 51 KATVDVPEDAY-VMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEEE--TTTS-EEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEEcCCce-EEEEEEcCCCCcEeCCCCccEEEEc
Confidence 36788888766 599999986 799999999999986
No 29
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=80.73 E-value=1.1 Score=56.65 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=53.4
Q ss_pred CCCCeEEEEecCCCCCCCC----CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCc
Q 001959 558 YDRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSAD 633 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~eeIp----~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~ 633 (991)
+..|.|||++...- .+++ .+|+||+|.+-. .-||.++.||++|||.+.=-+ .... ...|..|.+......
T Consensus 319 ~~~~~Ilva~~l~p-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~ 392 (748)
T PRK11061 319 WPERFILVADELTA-TLLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGE 392 (748)
T ss_pred CCCCEEEEECCCCH-HHHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCE
Confidence 35677888777651 3333 279999998874 789999999999999765222 2222 235999998887766
Q ss_pred eEEEec
Q 001959 634 IAYSVV 639 (991)
Q Consensus 634 ~~l~~~ 639 (991)
+.+.+.
T Consensus 393 v~vnP~ 398 (748)
T PRK11061 393 LLVDPE 398 (748)
T ss_pred EEeCCC
Confidence 767653
No 30
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=76.71 E-value=3.9 Score=49.68 Aligned_cols=126 Identities=23% Similarity=0.227 Sum_probs=71.8
Q ss_pred HHHHhhhhhHH----------HHHHHhhhhHHHHHhhCCCCceEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCC
Q 001959 501 EEMIRAGSAAA----------LSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVK 570 (991)
Q Consensus 501 Ee~IR~~~~f~----------lS~l~~~l~~~lr~~a~~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~ 570 (991)
+|.||.+.-.. ..++...=+|++|..++-- +-+.. =-|+.... ..-....+.++.|+|++...
T Consensus 266 ~~aIr~G~~Ae~Ave~V~s~~~ar~~~ltD~YLRER~~D~--~dL~~----RLL~~L~~-~~~~~~~~pe~aIlVarel~ 338 (756)
T COG3605 266 EEAIRKGLTAEAAVEQVQSEFAARFARLTDPYLRERASDL--RDLGQ----RLLRHLDG-AEQGANAWPEDAILVARELG 338 (756)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhccCHHHHHHHhhH--HHHHH----HHHHHhcC-cccchhcCCcceEEEecccC
Confidence 55666664332 3345555689999876521 10000 00111111 11124457777899998876
Q ss_pred CCC--CCC-CCceEEEcCCCCCcccceeeecccCCcceeEe-cChhhhhHhhhcCCCeEEEeecCCceEEEe
Q 001959 571 GEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATC-FDPNILADLQSNEGKMLHLKPTSADIAYSV 638 (991)
Q Consensus 571 G~e--eIp-~~VaGVit~~~~~~LSHv~VrARn~gVp~at~-~d~~~~~~l~~l~Gk~V~l~vs~~~~~l~~ 638 (991)
--+ |.| ...+||++.+- ..-||+++.||.+|||.+-- .|- .....+|..+-+.--...+.+++
T Consensus 339 aa~L~e~Pr~rL~GvVl~dG-aanSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~~gev~l~P 405 (756)
T COG3605 339 AAELLEYPRDRLRGVVLEDG-AANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGYRGEVHLRP 405 (756)
T ss_pred HHHHhhCchhhheeeeeecC-cccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECCcceEEeCC
Confidence 322 455 47999998764 47899999999999998863 221 22345566555544444444444
No 31
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=72.25 E-value=3.9 Score=49.80 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCeEEEEecCCCCCCCC---CCceEEEcCCCCCcccceeeecccCCcceeEecChhhhhHhhhcCCCeEEEeecCCce
Q 001959 558 YDRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (991)
Q Consensus 558 ~~~p~Ill~~~v~G~eeIp---~~VaGVit~~~~~~LSHv~VrARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~~ 634 (991)
.++|.||+++.+.=-+-.. ..|.|++|..-+ .-||.++.||..+||-++-.... ...++ +|+.|-+....+.+
T Consensus 153 ~~~~~IlvA~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v~--~g~~viiDg~~G~v 228 (574)
T COG1080 153 IDEEVILVAEDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAVK--DGDTLILDGINGEV 228 (574)
T ss_pred CCCCeEEEECCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhccc--CCCEEEEECCCCeE
Confidence 3567888876554000000 169999998755 78999999999999998866642 22233 89999998888777
Q ss_pred EEEec
Q 001959 635 AYSVV 639 (991)
Q Consensus 635 ~l~~~ 639 (991)
.+.+.
T Consensus 229 i~nP~ 233 (574)
T COG1080 229 IVNPD 233 (574)
T ss_pred EECcC
Confidence 77653
No 32
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=67.47 E-value=2.4 Score=53.76 Aligned_cols=110 Identities=22% Similarity=0.245 Sum_probs=72.3
Q ss_pred chhhccccHHHHhhhhhHHHHHHHhhhhHHHHHhhCCCCceEeeeeEEEEEEEEecccccccccCCCCCeEEEEecCCCC
Q 001959 493 KWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGE 572 (991)
Q Consensus 493 ~~~v~~F~Ee~IR~~~~f~lS~l~~~l~~~lr~~a~~~~wq~ispG~A~G~L~~V~~l~~~~~~~~~~p~Ill~~~v~G~ 572 (991)
+|.++- .+.++|+.+.-..+.+-...++ ...-..++. .+||.+.|+++++.+..+. ......+||+......
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 455554 5557777777666666555555 111122233 8999999999998877665 2334567888776652
Q ss_pred CCCC-CCc-eEEEcCCCCCcccceeeecccCCcceeEecCh
Q 001959 573 EEIP-DGT-VAVLTADMPDVLSHVSVRARNCKVCFATCFDP 611 (991)
Q Consensus 573 eeIp-~~V-aGVit~~~~~~LSHv~VrARn~gVp~at~~d~ 611 (991)
+.+| ..+ .||+ ++..-..||-++.||.+|+|-+.=-..
T Consensus 377 d~~~~m~~a~~Iv-t~~Gg~tshaaivaRe~g~Pavvg~~~ 416 (740)
T COG0574 377 DWVPLMKVAGAIV-TDRGGMTSHAAIVARELGIPAVVGTGS 416 (740)
T ss_pred HHhhhhhhccceE-EcCCCccccchhhhhhcCCCeEEcCch
Confidence 4444 234 4555 666669999999999999998874443
No 33
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=54.42 E-value=24 Score=38.05 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=37.6
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHcC--CceEEEEEEE--CCeEEEEeecc
Q 001959 941 RLITDGHFQQSILSSIARAGCEIEELFG--SAQDIEGVVR--DGKIYVVQTRP 989 (991)
Q Consensus 941 p~LtD~~~r~~ll~~La~lg~~IE~~fG--~PQDIEwai~--dg~LyILQaRP 989 (991)
+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 4566655 6899999999999887 6999999999 79999999988
No 34
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=38.16 E-value=39 Score=37.21 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=22.3
Q ss_pred ChhhHHHHHhhC-CCChHhhhcCCCC
Q 001959 244 DISAYWKTLNDN-GITKERLLSYDRA 268 (991)
Q Consensus 244 ~~~~yw~~l~~~-g~t~e~l~s~~r~ 268 (991)
|.-++|..+-+. |+|+|++.|++ |
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-p 116 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-P 116 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-C
Confidence 677899999999 99999999999 6
No 35
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.07 E-value=1.2e+02 Score=33.80 Aligned_cols=87 Identities=20% Similarity=0.374 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 001959 156 DRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQ-RIRDEILVIQRNNN---------CKGG---------MMEEW 216 (991)
Q Consensus 156 ~~~t~~~~~~~~~~~~~r~~~r~~l~t~~rGG~g~~gq-~ird~IL~i~r~n~---------~kgg---------~~eeW 216 (991)
+|++..+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ ..|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888888999999999988777 777777887 55544433332111 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHhhCCChh
Q 001959 217 HQKLHNNTSPDDVIICQALIDYIKSDFDIS 246 (991)
Q Consensus 217 HQKLHnNTtpdDv~ICea~l~~l~s~~~~~ 246 (991)
-+| ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 666677999999999999988 544
No 36
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=34.62 E-value=35 Score=37.60 Aligned_cols=43 Identities=33% Similarity=0.500 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHccCcchHHHHHHHHhhccCCCCCCCchhh
Q 001959 151 ISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRI 195 (991)
Q Consensus 151 ~~~aq~~~t~~~~~~~~~~~~~r~~~r~~l~t~~rGG~g~~gq~i 195 (991)
+++-|..|...||+.+..+-..++..|---.||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 45667899999999999999999988888999999998 55544
No 37
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=29.37 E-value=3.9e+02 Score=36.95 Aligned_cols=136 Identities=21% Similarity=0.194 Sum_probs=78.4
Q ss_pred chhhhHHHHHHHHHH---HHHHHhhchhhhcCChhhHHHHHHHHHhhhccCCCCcHH-----HHHHHHHHHhhhhcCCCC
Q 001959 377 LKDLLFLDIALESSV---RTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNED-----LIYCLKGWSNALSMSKSK 448 (991)
Q Consensus 377 ~~d~~~lD~ale~~~---r~~~e~~~~~~~~~~~~~~~~~~~l~l~nl~Ls~~~n~e-----l~~~l~~W~~~~~~~~~~ 448 (991)
|-.|-|=|++=..++ |..+|..+-.+.. +|||++.+++-+||||.+-.|.|.- ++-....-.-+.. .
T Consensus 375 LTNLTFGDv~NKa~LCs~rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~---~- 449 (2195)
T KOG2122|consen 375 LTNLTFGDVANKATLCSQRGFMEAVVAQLIS-APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR---N- 449 (2195)
T ss_pred hhccccccccchhhhhhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH---h-
Confidence 334455555533322 5556666655654 4899999999999999999987763 2111111111111 1
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhHHHHHH--hhcchHHHHhhhcCcc--chhhccccHHHHhhhhhHHHHHHHhhhhHH
Q 001959 449 SDNWALFAKSVLDRTRLALASKADWYQK--VLQPSAEYLGTLLSVD--KWAVDIFTEEMIRAGSAAALSLLLNRLDPV 522 (991)
Q Consensus 449 ~~~wAL~lkA~ldr~r~~~~~~~~~~~~--~~~~~a~~lG~~lg~e--~~~v~~F~Ee~IR~~~~f~lS~l~~~l~~~ 522 (991)
.++ -.|||+|--.=.+-+..++.=.. ..+..-.+|-+.|.++ -+...+.-- =+|+...+|.+|.-=.++
T Consensus 450 ~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 450 KKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred ccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 111 34788887776666544443333 2455667888888888 444442211 245667777776655554
No 38
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=25.47 E-value=60 Score=26.51 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCCCchHHHHHHHHHHHhhC
Q 001959 223 NTSPDDVIICQALIDYIKSD 242 (991)
Q Consensus 223 NTtpdDv~ICea~l~~l~s~ 242 (991)
.-||||-.||.|+-+|-.+.
T Consensus 14 GdteddT~v~r~l~~yY~~k 33 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEK 33 (41)
T ss_pred CCCcchhHHHHHHHHHHHHc
Confidence 45899999999999998765
Done!