Query 001961
Match_columns 990
No_of_seqs 415 out of 1553
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 13:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 8E-154 2E-158 1420.6 81.2 766 194-990 26-832 (900)
2 KOG1041 Translation initiation 100.0 4E-140 9E-145 1285.9 74.2 757 198-990 42-807 (876)
3 KOG1042 Germ-line stem cell di 100.0 2E-118 4E-123 988.2 54.2 695 206-990 87-802 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 2E-91 4.4E-96 809.2 40.7 392 567-990 1-398 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 9E-87 1.9E-91 778.4 45.1 414 535-990 2-422 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.3E-78 2.9E-83 696.7 40.8 358 580-990 2-367 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.3E-63 2.8E-68 556.5 23.8 270 698-990 1-273 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 2.6E-40 5.5E-45 382.3 27.1 250 694-990 109-375 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 3.5E-23 7.5E-28 202.5 10.2 133 409-546 1-135 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 1.1E-20 2.3E-25 179.3 13.3 113 409-522 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 2.2E-20 4.8E-25 176.7 11.7 112 408-522 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 2.5E-18 5.5E-23 162.0 9.3 106 409-523 2-115 (117)
13 cd02844 PAZ_CAF_like PAZ domai 99.5 5.5E-14 1.2E-18 135.4 6.5 84 436-523 27-133 (135)
14 PF08699 DUF1785: Domain of un 99.5 2E-14 4.2E-19 114.3 2.8 52 356-408 1-52 (52)
15 PF12764 Gly-rich_Ago1: Glycin 99.3 5.1E-12 1.1E-16 110.2 8.6 99 87-193 3-103 (104)
16 KOG0921 Dosage compensation co 98.7 7.5E-08 1.6E-12 113.5 11.9 15 27-41 1160-1174(1282)
17 KOG0921 Dosage compensation co 98.7 6.4E-08 1.4E-12 114.1 11.4 8 50-57 1202-1209(1282)
18 cd02843 PAZ_dicer_like PAZ dom 98.6 7.7E-08 1.7E-12 89.4 5.9 67 438-507 39-106 (122)
19 COG1431 Argonaute homolog, imp 98.3 4.5E-05 9.9E-10 87.0 19.3 270 639-988 356-638 (685)
20 PF12764 Gly-rich_Ago1: Glycin 96.5 0.004 8.7E-08 55.3 4.8 49 125-173 40-92 (104)
21 KOG1596 Fibrillarin and relate 94.3 0.19 4.1E-06 52.5 8.5 6 272-277 157-162 (317)
22 COG4371 Predicted membrane pro 90.1 0.46 9.9E-06 49.5 5.1 10 170-179 160-169 (334)
23 smart00157 PRP Major prion pro 88.7 2.3 4.9E-05 42.6 8.5 12 227-238 158-169 (217)
24 PF05642 Sporozoite_P67: Sporo 85.2 15 0.00033 43.1 13.8 20 530-549 587-606 (727)
25 KOG4307 RNA binding protein RB 81.5 18 0.0004 43.4 12.7 12 215-226 869-880 (944)
26 TIGR00194 uvrC excinuclease AB 73.9 23 0.00051 43.1 11.4 109 776-918 382-498 (574)
27 KOG1924 RhoA GTPase effector D 71.5 13 0.00028 45.2 8.1 14 213-226 636-649 (1102)
28 KOG3915 Transcription regulato 71.4 18 0.00038 41.4 8.7 13 224-236 181-193 (641)
29 PF08459 UvrC_HhH_N: UvrC Heli 68.9 26 0.00057 35.0 8.5 104 774-913 10-120 (155)
30 KOG3915 Transcription regulato 64.8 40 0.00087 38.7 9.7 9 511-519 371-379 (641)
31 cd06559 Endonuclease_V Endonuc 62.6 37 0.0008 35.7 8.7 81 773-871 23-105 (208)
32 PF05642 Sporozoite_P67: Sporo 57.2 4.1E+02 0.0089 31.9 16.2 18 744-761 695-712 (727)
33 PRK12306 uvrC excinuclease ABC 54.7 1E+02 0.0022 37.2 11.7 107 774-917 365-476 (519)
34 PRK14670 uvrC excinuclease ABC 53.3 1.3E+02 0.0027 36.9 12.2 110 774-916 357-471 (574)
35 PRK14671 uvrC excinuclease ABC 48.1 1.4E+02 0.0029 37.1 11.5 107 774-917 414-525 (621)
36 PRK14672 uvrC excinuclease ABC 45.6 2E+02 0.0043 35.8 12.1 108 774-916 453-564 (691)
37 PRK14666 uvrC excinuclease ABC 45.3 1.4E+02 0.0031 37.0 11.0 100 774-908 471-571 (694)
38 PRK00558 uvrC excinuclease ABC 44.0 1.9E+02 0.0042 35.6 12.0 99 774-908 382-485 (598)
39 PRK14669 uvrC excinuclease ABC 40.0 2.3E+02 0.005 35.1 11.7 107 774-916 395-506 (624)
40 KOG0037 Ca2+-binding protein, 37.0 59 0.0013 34.1 5.1 9 341-349 160-168 (221)
41 PRK14667 uvrC excinuclease ABC 36.5 3E+02 0.0064 33.7 11.8 107 774-917 360-471 (567)
42 PF04094 DUF390: Protein of un 32.2 2.1E+02 0.0045 35.3 9.2 10 896-905 795-804 (828)
43 PF07555 NAGidase: beta-N-acet 31.8 5.1E+02 0.011 29.0 11.9 105 646-755 18-147 (306)
44 PF04094 DUF390: Protein of un 31.1 2.2E+02 0.0048 35.1 9.1 8 216-223 202-209 (828)
45 KOG1984 Vesicle coat complex C 30.6 1.3E+03 0.027 29.7 19.5 36 835-871 935-970 (1007)
46 PF00763 THF_DHG_CYH: Tetrahyd 28.2 2.7E+02 0.0058 26.3 7.7 58 693-752 27-85 (117)
47 cd01457 vWA_ORF176_type VWA OR 26.8 3E+02 0.0065 28.4 8.7 69 835-908 78-151 (199)
48 PRK14668 uvrC excinuclease ABC 26.0 3.9E+02 0.0085 32.8 10.5 104 774-916 374-484 (577)
49 PF09373 PMBR: Pseudomurein-bi 25.2 75 0.0016 22.8 2.5 19 847-865 15-33 (33)
50 PF05387 Chorion_3: Chorion fa 24.1 3.2E+02 0.0068 29.1 7.7 36 188-231 147-183 (277)
51 KOG1923 Rac1 GTPase effector F 23.8 1.7E+02 0.0038 36.2 6.7 9 569-577 583-591 (830)
52 KOG3875 Peroxisomal biogenesis 23.5 2.3E+02 0.0051 31.3 6.9 74 10-91 27-100 (362)
53 PLN03138 Protein TOC75; Provis 23.3 60 0.0013 40.8 2.9 28 55-82 78-105 (796)
54 KOG0037 Ca2+-binding protein, 21.5 1.8E+02 0.004 30.6 5.5 9 214-222 96-104 (221)
55 KOG4849 mRNA cleavage factor I 21.2 1.2E+03 0.026 26.3 12.0 6 208-213 326-331 (498)
56 PRK14183 bifunctional 5,10-met 20.8 4E+02 0.0088 29.4 8.4 54 694-750 30-85 (281)
57 PRK14194 bifunctional 5,10-met 20.6 4.2E+02 0.0091 29.6 8.6 57 693-751 31-88 (301)
58 PRK14185 bifunctional 5,10-met 20.5 4E+02 0.0087 29.7 8.3 56 694-751 30-86 (293)
59 PF07462 MSP1_C: Merozoite sur 20.3 1.5E+02 0.0032 35.3 5.0 8 230-237 370-377 (574)
60 PRK14166 bifunctional 5,10-met 20.3 4.4E+02 0.0095 29.2 8.5 57 693-751 28-85 (282)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=8.2e-154 Score=1420.62 Aligned_cols=766 Identities=38% Similarity=0.654 Sum_probs=660.4
Q ss_pred CCCCCccCcCCCCCCCCCCcceEeeceEEEecC--CCceEEEEEEecC----CCCchhhHHHHHHHHHHHHHhhccCCcc
Q 001961 194 PSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITP----EVTSRGVNRAVMEQLVKLYRESHLGKRL 267 (990)
Q Consensus 194 ~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~--~~~iy~YdV~i~p----e~~~k~~~r~i~~~l~~~~~~~~~g~~~ 267 (990)
+..+...+++||++||.|++|.|+||||+|+++ +..||||||+|+| ++.+++++++|++++++++... +.+..
T Consensus 26 ~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ 104 (900)
T PLN03202 26 PSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKD 104 (900)
T ss_pred ccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCc
Confidence 344444678899999999999999999999974 6789999999996 3455778899999888766443 44446
Q ss_pred ceEeCCceEEecCCCCCCcceEEEEEecCCCCC------------C---------CCCCCcEEEEEEEEeeEechhhHHH
Q 001961 268 PAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQ------------G---------GQRREREFKVVIKLAARADLHHLGL 326 (990)
Q Consensus 268 ~~yDG~k~lys~~~L~~~~~~~~v~l~~~~~~~------------~---------~~~~~~~~~V~Ik~~~~~~l~~l~~ 326 (990)
+||||+++|||+.+||++..+|.|++.+++++. . ...+.+.|+|+|++++++++.+|.+
T Consensus 105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~ 184 (900)
T PLN03202 105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN 184 (900)
T ss_pred eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence 799999999999999987677888775421110 0 0124688999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHhcCCCCC-ccccCccccCCCCCCcccCCCcEEEEeeeeeeeeeccCceEEeeecccccc
Q 001961 327 FLQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAF 405 (990)
Q Consensus 327 ~l~g~~~~~~~~~iq~Lniilr~~~~~~-~~~~gr~ff~~~~~~~~~lg~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F 405 (990)
||.+.....+.++||+||||||+.++.. ++.+||+||.++.....+++.|+|+|+||++|||+++++|+||||+++++|
T Consensus 185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F 264 (900)
T PLN03202 185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 264 (900)
T ss_pred HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence 9999877788999999999999987655 889999999865444567899999999999999999999999999999999
Q ss_pred ccCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCC--------
Q 001961 406 IEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-------- 477 (990)
Q Consensus 406 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~-------- 477 (990)
|++++|+|+|.++.+... ....++.++.++|+|++|.++|+ +++|+|.+|++.++++.+|++++.
T Consensus 265 ~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~ 337 (900)
T PLN03202 265 VQPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVE 337 (900)
T ss_pred ecCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCC
Confidence 999999999998764321 11234567999999999999998 479999999999999999986421
Q ss_pred CceeeHHHHHHHHcCCcccCC-CCceEEeccCCcCccccccceeeccCcccccCCCHHHHHHHHHhhcCCchHHHHHHHH
Q 001961 478 GTLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQ 556 (990)
Q Consensus 478 g~~iSV~eYf~~~Y~i~L~~p-~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~i~~ 556 (990)
+++|||+|||+++|||+|+|| +||||++++..+++|||||||.|+++|+++++|++.|+++||++|+.+|.+|.+.|.+
T Consensus 338 ~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~ 417 (900)
T PLN03202 338 TVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD 417 (900)
T ss_pred cceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHH
Confidence 358999999999999999996 9999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCccccccCeEEcccceEeeeEEeCCCceeeccCCCccccCCcCccccccCceeeeCceeceeEEEEecCCc
Q 001961 557 TVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHV 636 (990)
Q Consensus 557 ~~~~~~~~~~~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l~~W~vv~~~~~~ 636 (990)
+++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++. .+.|.+|+||+++++|+.++++++|+||+|.+.
T Consensus 418 ~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~- 493 (900)
T PLN03202 418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR- 493 (900)
T ss_pred HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc-
Confidence 9988888889999999999999999999999999999998642 245789999999999999999999999988644
Q ss_pred chHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCC--chhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCC-CCchhHH
Q 001961 637 QDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGD 713 (990)
Q Consensus 637 ~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~-~~~~Y~~ 713 (990)
..++.|++.|.+.|+.+||.+..++.+.....+ ....+..++..++++.++++ ..++|||||||++ +.++|+.
T Consensus 494 --~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~ 569 (900)
T PLN03202 494 --CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGP 569 (900)
T ss_pred --hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHH
Confidence 257899999999999999999764322111110 01112334455544444332 4689999999974 6789999
Q ss_pred HHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCC
Q 001961 714 LKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSS 793 (990)
Q Consensus 714 iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~ 793 (990)
||++||+++||+||||... +.++||++|||||||+||||+||.+..+.+..+|++.+.+|||||+||+||+++....
T Consensus 570 IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~ 646 (900)
T PLN03202 570 WKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDV 646 (900)
T ss_pred HHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCC
Confidence 9999999999999999654 3478999999999999999999988765445678888889999999999999886557
Q ss_pred CceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHHHh-CCCCceEEEEecCCCc
Q 001961 794 PSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSE 872 (990)
Q Consensus 794 pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~~-g~~P~~IIiyRDGVse 872 (990)
|||||||||+||+++++|++.+++|.+++|+|++|+.+..+ ..+++||+++|+.|++.+ +.+|++||||||||||
T Consensus 647 pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVse 722 (900)
T PLN03202 647 PSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSE 722 (900)
T ss_pred CceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCH
Confidence 99999999999888999999999999999999988533221 235799999999999876 6899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEe
Q 001961 873 GQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLC 952 (990)
Q Consensus 873 gq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~ 952 (990)
|||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||.+||||||
T Consensus 723 GQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~ 794 (900)
T PLN03202 723 SQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMC 794 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEe
Confidence 9999999999999999999998899999999999999999999853 35899999999999999999999999
Q ss_pred eccCccccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 953 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 953 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
||+++|||||||||+||+||+++++|+||+|||+|||+
T Consensus 795 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~ 832 (900)
T PLN03202 795 AHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV 832 (900)
T ss_pred cccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999996
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-140 Score=1285.91 Aligned_cols=757 Identities=41% Similarity=0.668 Sum_probs=657.8
Q ss_pred CccCcCCCCCCCCCCcceEeeceEEEec--CCCc-eEEEEEEecCCCCchhhHH-HHHHHHHHHHHhhccCCccceEeCC
Q 001961 198 SVRFPLRPGRGSTGTRCIVKANHFFAEL--PDKD-LHQYDVTITPEVTSRGVNR-AVMEQLVKLYRESHLGKRLPAYDGR 273 (990)
Q Consensus 198 ~~~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~-iy~YdV~i~pe~~~k~~~r-~i~~~l~~~~~~~~~g~~~~~yDG~ 273 (990)
....+.||+.|+.|++|.|.||||.+++ ++.. ++||+|++.++..++.+++ .++..+++......+....++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 3345569999999999999999999766 4555 9999999999988777765 5555555544333355556679999
Q ss_pred ceEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeEechhhHHHHhcCCCCCChHHHHHHHHHHHhcCCCC
Q 001961 274 KSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTT 353 (990)
Q Consensus 274 k~lys~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~ 353 (990)
++|||..+|+....++.+.+..+.+ ...|+++|++.+.+.+..+..++.+.....+.+++|+||+++++.++.
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~ 194 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKE-------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATS 194 (876)
T ss_pred ceeEeccccccccceEEEEecCCCC-------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhch
Confidence 9999977776423333333322211 111999999999888888988988877778999999999999999987
Q ss_pred C-ccccCccccCCCCCCcccCCCcEEEEeeeeeeeeeccCceEEeeeccccccccCccHHHHHHHHhcCCCCCCCCChHH
Q 001961 354 R-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDAD 432 (990)
Q Consensus 354 ~-~~~~gr~ff~~~~~~~~~lg~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~ 432 (990)
. +..++++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|+++++++++... +.+....
T Consensus 195 ~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~--~~~~~~~ 272 (876)
T KOG1041|consen 195 QGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT--RAFHKDR 272 (876)
T ss_pred hcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc--ccccccc
Confidence 7 999999999863333455899999999999999999999999999999999999999999999987643 2333332
Q ss_pred HHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCC-CceeeHHHHHHHHcCCcccCCCCceEEeccCCcC
Q 001961 433 RVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES-GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRP 511 (990)
Q Consensus 433 ~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~-g~~iSV~eYf~~~Y~i~L~~p~lP~l~~g~~~~~ 511 (990)
...++++||||+|+++| ++..|.|+|.+++..++.+.+|++++. +.++||+|||+++||++|+||+||||+++...+.
T Consensus 273 ~~~~~~~lkgL~v~~~h-~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~ 351 (876)
T KOG1041|consen 273 PLDIKKALKGLKVYVTH-GKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRE 351 (876)
T ss_pred chhHHHHhhCcEEEEec-ccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCC
Confidence 33489999999999999 466899999999999999999997664 5889999999999999999999999999998899
Q ss_pred ccccccceeeccCccccc-CCCHHHHHHHHHhhcCCchHHHHHHHHHHHhccCCCCccccccCeEEcccceEeeeEEeCC
Q 001961 512 NYLPMEVCKIVEGQRYSK-RLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPA 590 (990)
Q Consensus 512 ~ylP~Elc~i~~gQ~~~~-kl~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~v~arvL~~ 590 (990)
+|+|||||.|++|||+.+ +|++.|+++|++.++..|++|.+.|.++++...+..|++|++|||+|.++|+.|+||+||+
T Consensus 352 ~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~ 431 (876)
T KOG1041|consen 352 NFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPP 431 (876)
T ss_pred cccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCC
Confidence 999999999999999998 9999999999999999999999999999998888889999999999999999999999999
Q ss_pred CceeeccCCCccccCCcCccccccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCC
Q 001961 591 PWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (990)
Q Consensus 591 P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~ 670 (990)
|+|+|+++ .....|..|.|++++++|+.|+.+..|+|++|....+... +.|+++|++.|+..||.|.. |. ....
T Consensus 432 P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~ 505 (876)
T KOG1041|consen 432 PKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAP 505 (876)
T ss_pred ceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCc
Confidence 99999985 3346788999999999999999999999999987655555 89999999999999999976 55 2111
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHH
Q 001961 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKIN 750 (990)
Q Consensus 671 ~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN 750 (990)
..+.++..++. .....+....++||+||+++++.++|+.||+++|..+||+||||+.+++.|..+||++||+||||
T Consensus 506 ~~~~~~~~~~~----~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN 581 (876)
T KOG1041|consen 506 TEESLEDMITE----KSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKIN 581 (876)
T ss_pred ccchhHHHHHH----HHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHh
Confidence 22334333322 22222112569999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCC--CCceeEEEEeecCCCccceeeEEEEccCChhhhhhh
Q 001961 751 VKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS--SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL 828 (990)
Q Consensus 751 ~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~--~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l 828 (990)
+||||+|+.|.++.+...| ..+.||||||+|||||+++... .|||||||+|+|| +.++|.+.+++|.+|+|+|+++
T Consensus 582 ~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~ 659 (876)
T KOG1041|consen 582 VKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL 659 (876)
T ss_pred hccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch
Confidence 9999999998876544444 4578999999999999998654 5999999999997 9999999999999999999884
Q ss_pred hccccCCCcccchhHHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001961 829 FKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (990)
Q Consensus 829 ~~~~~~~~~~~~~~~m~~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~K 908 (990)
.+|+.++|..|+++++.+|++|||||||||||||.+|+++|+.+||+||..+.++|.|+||||||+|
T Consensus 660 -------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qK 726 (876)
T KOG1041|consen 660 -------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQK 726 (876)
T ss_pred -------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHHHHhh
Q 001961 909 RHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 988 (990)
Q Consensus 909 rh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC 988 (990)
|||||||+.+..+ +..++..||+||||||+.||||.++|||||||.++||||||||||||+||++|++|+||+|||+||
T Consensus 727 rHhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc 805 (876)
T KOG1041|consen 727 RHHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALC 805 (876)
T ss_pred ccceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999988762 234678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 001961 989 YT 990 (990)
Q Consensus 989 ~~ 990 (990)
|+
T Consensus 806 ~~ 807 (876)
T KOG1041|consen 806 FT 807 (876)
T ss_pred hh
Confidence 96
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-118 Score=988.21 Aligned_cols=695 Identities=27% Similarity=0.432 Sum_probs=602.4
Q ss_pred CCCCCCCcceEeeceEEEecC-CCceEEEEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEeCCceEEecCCCCC
Q 001961 206 GRGSTGTRCIVKANHFFAELP-DKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF 284 (990)
Q Consensus 206 ~~Gt~G~~i~l~tN~f~i~~~-~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yDG~k~lys~~~L~~ 284 (990)
+.|+.|.+|+|.||||++... ++.||||+|+++|++++++++++++. .|.+. +|. ..+|||. .||...+|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~~l-ig~-~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHTDL-IGK-GYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhHhh-hcc-ceeecce-eehhhHHHhh
Confidence 569999999999999999765 89999999999999999988777665 44443 443 4589998 7999888753
Q ss_pred CcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeEechhhHHHHhcCCCCCChHHHHHHHHHHHhcC-CCCCccccCcccc
Q 001961 285 LSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLREL-PTTRYCPVGRSFY 363 (990)
Q Consensus 285 ~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~iq~Lniilr~~-~~~~~~~~gr~ff 363 (990)
+..+ +.. .++....++++||+++++.. .+.+.||++|+|+|.. ..+++.++||+||
T Consensus 160 ~~te----l~~------ks~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyy 216 (845)
T KOG1042|consen 160 KQTE----LVS------KSRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYY 216 (845)
T ss_pred hhhe----eec------ccCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccC
Confidence 2211 111 24567789999999987643 3578999999999984 4678999999999
Q ss_pred CCCCCCcccC-CCcEEEEeeeeeeeeeccCceEEeeeccccccccCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcc
Q 001961 364 SPDLGRRQPL-GEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRG 442 (990)
Q Consensus 364 ~~~~~~~~~l-g~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkG 442 (990)
++. ...++ ..-+++|+||..|||..+..++|+.|+++++ .+..||+|+|..+... ++...+++++.+.|
T Consensus 217 np~--~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-------~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 217 DPR--AKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-------TQRFQETVNKNVIG 286 (845)
T ss_pred CCC--cccccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-------HHHHHHHHHHHhcc
Confidence 986 34455 4679999999999999999999999999985 7888999999988652 34567789999999
Q ss_pred cEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHHHHHcCCcccCCCCceEEeccCCc--------Cccc
Q 001961 443 VRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQR--------PNYL 514 (990)
Q Consensus 443 l~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~~~Y~i~L~~p~lP~l~~g~~~~--------~~yl 514 (990)
+.|.+.|+ +|+|+|++|++..++.+||..+| | +||++|||+++|||+|++-+||+|+...+.| .++|
T Consensus 287 livLT~YN---NktyriddvD~~~tP~stF~k~d-g-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~l 361 (845)
T KOG1042|consen 287 LIVLTRYN---NKTYRIDDVDFSQTPLSTFKKDD-G-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAML 361 (845)
T ss_pred eEEEEecC---CceeeeeccccCcCccceeeecC-c-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceee
Confidence 99999998 79999999999999999998653 4 8999999999999999999999999865432 4699
Q ss_pred cccceeeccCcccccCCCHHHHHHHHHhhcCCchHHHHHHHHHHHhccCCC--CccccccCeEEcccceEeeeEEeCCCc
Q 001961 515 PMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHE--DPYAREFGIKISEKLASVEARILPAPW 592 (990)
Q Consensus 515 P~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~--~~~l~~fGi~i~~~~~~v~arvL~~P~ 592 (990)
.||||+++ |-...++-+.+.|++|.+++...|++|..++..+...+.-+. -+.|+.|||+++.+.++|.|||||+.+
T Consensus 362 IPELc~~T-GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEk 440 (845)
T KOG1042|consen 362 IPELCFLT-GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEK 440 (845)
T ss_pred ehhhhhcc-CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccc
Confidence 99999998 666666777888999999999999999999988877654332 356899999999999999999999999
Q ss_pred eeeccCCCccccCCcCcccc--ccCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCC
Q 001961 593 LKYHDTGKEKDCLPQVGQWN--MMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670 (990)
Q Consensus 593 i~y~~~~~~~~~~p~~G~Wn--~~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~ 670 (990)
|.+++. + ....+....|. ++.-.+++...+++|++++..+ +..+++.|++.|.+.+..+||++.++-++.+.++
T Consensus 441 I~~~~~-~-~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~dd 516 (845)
T KOG1042|consen 441 ILFGNQ-K-VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICVEIKDD 516 (845)
T ss_pred eecCCc-c-cCCCcchhhhhhhcccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEEEeCCC
Confidence 999873 1 12334557896 5777888989999999997654 3568999999999999999999988666777777
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHHHhhhccCeeeeeeeeccccccc--hhHHHHHHHH
Q 001961 671 RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMS--KQYMANVALK 748 (990)
Q Consensus 671 ~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~--~q~~~Ni~lK 748 (990)
+++.+-+++++.. +.++|+|+||+|+.+++.|+.||++++++..||||||..+|+.+.. .++...|+||
T Consensus 517 r~~tYvraiqq~v---------~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQ 587 (845)
T KOG1042|consen 517 RPGTYVRAIQQVV---------GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQ 587 (845)
T ss_pred ChHHHHHHHHHhc---------cCCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHH
Confidence 7888888777654 3579999999999999999999999999999999999999997644 5678899999
Q ss_pred HHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhhhhhh
Q 001961 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL 828 (990)
Q Consensus 749 iN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l 828 (990)
|||||||..|.++ ||+ +.+||||+||+|.+. ....|++|+||||| ..+++|+|.+..|...+|+.+.|
T Consensus 588 mnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L 655 (845)
T KOG1042|consen 588 MNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL 655 (845)
T ss_pred HhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH
Confidence 9999999999875 565 679999999999875 34579999999999 99999999999999999999988
Q ss_pred hccccCCCcccchhHHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHH----HHHHHHHhhCCCCCCCEEEE
Q 001961 829 FKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELD----AIRKACASLEPNYQPPVTFV 904 (990)
Q Consensus 829 ~~~~~~~~~~~~~~~m~~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~----~i~~a~~~~~~~~~P~it~I 904 (990)
.-++..+|++|++.|..+|+||||||||||+||+.++.++||+ ++.+.++++..+|+|+++||
T Consensus 656 -------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~i 722 (845)
T KOG1042|consen 656 -------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVI 722 (845)
T ss_pred -------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 6899999999999999999999999999999999999999999 77777788888899999999
Q ss_pred EEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHH
Q 001961 905 VVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 984 (990)
Q Consensus 905 vv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt 984 (990)
||+||.++|||..... ...||+||||||+.||.|.++||||+||++.|||..||||.||+|++++++|.+|+||
T Consensus 723 VV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLt 796 (845)
T KOG1042|consen 723 VVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLT 796 (845)
T ss_pred EEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHH
Confidence 9999999999997543 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 001961 985 NNLCYT 990 (990)
Q Consensus 985 ~~LC~~ 990 (990)
|+|||+
T Consensus 797 fKlCHl 802 (845)
T KOG1042|consen 797 FKLCHL 802 (845)
T ss_pred HHHhhe
Confidence 999996
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2e-91 Score=809.24 Aligned_cols=392 Identities=51% Similarity=0.894 Sum_probs=344.5
Q ss_pred ccccccCeEEcccceEeeeEEeCCCceeeccCCCccccCCcCccccccCceeeeCceeceeEEEEecCCcch----HHHH
Q 001961 567 PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQD----SIAR 642 (990)
Q Consensus 567 ~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~----~~~~ 642 (990)
++|++|||+|+++|++|+||+||+|+|.|+++. ....+.+|+||+++++|++++.+++|+||++.+..+. +.++
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~ 78 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLR 78 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHH
Confidence 468999999999999999999999999999533 2345778999999999999999999999988653222 4789
Q ss_pred HHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHHHhhhcc
Q 001961 643 GFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDL 722 (990)
Q Consensus 643 ~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~ 722 (990)
.|++.|.+.|+.+||++. ..+. ...+. ++.+++.+.++. ...++|||||||+++.++|+.||++||+++
T Consensus 79 ~F~~~l~~~~~~~g~~~~--~~~~---~~~~~----~~~~~~~~~~~~--~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~ 147 (426)
T cd04657 79 NFVDQLVKTVIGAGINIT--TAIA---SVEGR----VEELFAKLKQAK--GEGPQLVLVILPKKDSDIYGRIKRLADTEL 147 (426)
T ss_pred HHHHHHHHHHHhcCCccc--cccc---ccchh----HHHHHHHHHhhc--cCCCCEEEEEEcCCCcchHHHHHHHHhhcC
Confidence 999999999999999986 2111 11222 333333333222 136999999999988889999999999999
Q ss_pred Ceeeeeeeeccccc-cchhHHHHHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCC-CCCCceeEEE
Q 001961 723 GLVSQCCLTKHVFK-MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE-DSSPSIAAVV 800 (990)
Q Consensus 723 gI~TQci~~~t~~k-~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~-~~~pSiaavV 800 (990)
||+||||..+++.| .++||+.||+||||+||||+||.|+... .+++...+|||||+||+||++++ ...|||||||
T Consensus 148 gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V 224 (426)
T cd04657 148 GIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV 224 (426)
T ss_pred CcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE
Confidence 99999999999986 7799999999999999999999997642 22344689999999999999875 4679999999
Q ss_pred EeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHHHhCCCCceEEEEecCCCchhHHHHHH
Q 001961 801 ASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLL 880 (990)
Q Consensus 801 aS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~~g~~P~~IIiyRDGVsegq~~~vl~ 880 (990)
||+| .++++|.+.+++|.+++|+|++| ++|++++|+.|++.|+.+|++|||||||||||||.+|++
T Consensus 225 as~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 290 (426)
T cd04657 225 ASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN 290 (426)
T ss_pred EecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH
Confidence 9999 99999999999999999999988 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEeeccCcccc
Q 001961 881 YELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGT 960 (990)
Q Consensus 881 ~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGT 960 (990)
+|+++|++||.++.++|+|+||||||+||||+|||+.+..+.+ .+.+||+||||||++||+|..+|||||||.++|||
T Consensus 291 ~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGT 368 (426)
T cd04657 291 EELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGT 368 (426)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccc--ccCCCCCCCeEEecccCCCCceeEEEeccccCccC
Confidence 9999999999999888999999999999999999997664321 23789999999999999999999999999999999
Q ss_pred ccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 961 SRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 961 arPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
||||||+||+||+++++|+||+|||+|||+
T Consensus 369 arPt~Y~vl~d~~~~~~d~lq~lt~~lc~~ 398 (426)
T cd04657 369 ARPTHYHVLWDEIGFTADELQTLTYNLCYT 398 (426)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=9e-87 Score=778.45 Aligned_cols=414 Identities=30% Similarity=0.482 Sum_probs=367.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHhccCCCC--ccccccCeEEcccceEeeeEEeCCCceeeccCCCccccCCcCcccc
Q 001961 535 QITALLKVTCQRPHERERDIMQTVHHNAYHED--PYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWN 612 (990)
Q Consensus 535 q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~--~~l~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn 612 (990)
.|++|+++++.+|.+|++.|.++++.+.++.+ ++|++|||+|+++|++|+||+|+||.|.|+++. ...+..++|+
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w~ 78 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADWK 78 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCcc
Confidence 47899999999999999999999998877665 589999999999999999999999999998742 1234577887
Q ss_pred c--cCceeeeCceeceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhc
Q 001961 613 M--MNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKL 690 (990)
Q Consensus 613 ~--~~~kf~~~~~l~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~~~~~l~~~~~~a~~~~ 690 (990)
+ .+.+|+.+..+++|++|++. .+.+.++.|++.|.+.|+.+||.+..+.++.+...+.+++.+.|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~------ 150 (448)
T cd04658 79 REIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR------ 150 (448)
T ss_pred hhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc------
Confidence 5 46678999999999999875 3567899999999999999999997755554444445555555544332
Q ss_pred CCCCCccEEEEEecCCCCchhHHHHHHhhhccCeeeeeeeecccccc--chhHHHHHHHHHHHhcCccccccccccccCC
Q 001961 691 GQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRI 768 (990)
Q Consensus 691 ~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~ 768 (990)
.+++|+|||+|+++.++|..||++|+.+.||+||||..+++.+. ..+++.||+||||+||||+||.|+..
T Consensus 151 ---~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~----- 222 (448)
T cd04658 151 ---SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP----- 222 (448)
T ss_pred ---CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----
Confidence 46999999999988889999999999999999999999999764 56899999999999999999998653
Q ss_pred CccCCCCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhh-hhhhhccccCCCcccchhHHHHH
Q 001961 769 PLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQEL-IQDLFKTWQDPVRGAVSGGMIKE 847 (990)
Q Consensus 769 p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~~m~~~ 847 (990)
+ ....+|||||+||+||++. ..|||||+|||+| .++++|++.++.|..++|+ +++| ++|+++
T Consensus 223 ~-~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~ 285 (448)
T cd04658 223 P-FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKK 285 (448)
T ss_pred C-CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHH
Confidence 1 3357999999999999863 4699999999999 9999999999999999998 8777 799999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCC
Q 001961 848 LLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDR 927 (990)
Q Consensus 848 ~L~~f~~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~ 927 (990)
+|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+.. .
T Consensus 286 ~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~ 359 (448)
T cd04658 286 ALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------N 359 (448)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------C
Confidence 9999999999999999999999999999999999999999999998888999999999999999999997642 4
Q ss_pred CCCCCCcceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 928 SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 928 ~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
.+||+||||||++||||..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+
T Consensus 360 ~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~ 422 (448)
T cd04658 360 FSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHL 422 (448)
T ss_pred CCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhc
Confidence 589999999999999999999999999999999999999999999999999999999999996
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.3e-78 Score=696.75 Aligned_cols=358 Identities=32% Similarity=0.498 Sum_probs=311.4
Q ss_pred ceEeeeEEeCCCceeeccCCCccccCCcCccccccCceeeeCcee-ceeEEEEecCCcchHHHHHHHHHHHHHHHhcCcc
Q 001961 580 LASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTV-NHWICINFSRHVQDSIARGFCFELAQMCYISGMA 658 (990)
Q Consensus 580 ~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn~~~~kf~~~~~l-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gm~ 658 (990)
+++|+||+||+|.|.|+++ |++++++|+.++.+ ++|+|+++.+ +..+.|++.|.+.|+.+||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999741 99999999999999 9999998753 23568999999999999999
Q ss_pred cCC-CCccCCCCC--CchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHHHhhhccCeeeeeeeecccc
Q 001961 659 FNP-EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735 (990)
Q Consensus 659 i~~-~p~~~~~~~--~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~ 735 (990)
+.. ++...+... +.+++++.| +++.+ .+++|||||+|+++.++|+.||++|+.+ ||+||||+.+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~ 135 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVF----KNAIK-----AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAK 135 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHH----HHHhh-----cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhc
Confidence 976 333222211 223344444 33322 4699999999999889999999999988 9999999999997
Q ss_pred c--cchhHHHHHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCC-CCCCCceeEEEEeecCCCcccee
Q 001961 736 K--MSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG-EDSSPSIAAVVASQDWPEVTKYA 812 (990)
Q Consensus 736 k--~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~-~~~~pSiaavVaS~d~~~~~ky~ 812 (990)
+ ..++|+.||+||||+||||+||.|+.+ .+...+|||||+||+|++++ ....||++|||||+| .+ +.|.
T Consensus 136 ~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g 207 (393)
T cd02826 136 KMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLG 207 (393)
T ss_pred cccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccc
Confidence 6 678999999999999999999999753 12347899999999999876 345799999999999 65 4444
Q ss_pred eEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHHHhCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHH
Q 001961 813 GLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACA 891 (990)
Q Consensus 813 ~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~~g~-~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~ 891 (990)
+.++.|..++|++++| ++|++++|+.|+++++. +|++|||||||||||||.+|+++|+++|++||.
T Consensus 208 ~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~ 274 (393)
T cd02826 208 GFLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE 274 (393)
T ss_pred eEEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5678888889998887 79999999999999999 999999999999999999999999999999999
Q ss_pred hhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCcceeeccccCCCcccEEEeeccCccccccCCeeEEEec
Q 001961 892 SLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 971 (990)
Q Consensus 892 ~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~d 971 (990)
+..+|+|+||||+|+||||+|||+.+.++ ..+||+||||||++||||..+||||+||.++|||+|||||+||+|
T Consensus 275 -~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d 348 (393)
T cd02826 275 -IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFN 348 (393)
T ss_pred -hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEEC
Confidence 77789999999999999999999976542 348999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhcC
Q 001961 972 ENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 972 e~~~~~d~lq~lt~~LC~~ 990 (990)
|+++++|+||+|||+|||+
T Consensus 349 ~~~~~~d~lq~lty~lc~~ 367 (393)
T cd02826 349 DKNWSLNELEILTYILCLT 367 (393)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999996
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.3e-63 Score=556.52 Aligned_cols=270 Identities=48% Similarity=0.786 Sum_probs=243.7
Q ss_pred EEEEEecCCCCchhHHHHHHhhhccCeeeeeeeecccccc--chhHHHHHHHHHHHhcCccccccccccccCCCccCCCC
Q 001961 698 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRP 775 (990)
Q Consensus 698 lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~ 775 (990)
|||||+|+++.+.|..||++|+.++||+||||..+++.+. ..+++.||+||||+||||+|+.+.+. +...++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 5889999988899999999999999999999999999877 46999999999999999996443321 111111 68
Q ss_pred eEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHHH
Q 001961 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 855 (990)
Q Consensus 776 tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~~ 855 (990)
|||||+||+|+++.....||++|+|+|+| .+.++|.+.+..|..++|++++| .+|++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999877656799999999999 99999999999999999999987 78999999999999
Q ss_pred hCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCc
Q 001961 856 TGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPG 934 (990)
Q Consensus 856 ~g~-~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pG 934 (990)
++. +|++|||||||||||||.+|+++|+++|++||.++..+|.|+||||+|+||||+|||+.+..+ ...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-----~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-----GLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-----TTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-----ccCCCCCC
Confidence 998 999999999999999999999999999999999999899999999999999999999987642 46899999
Q ss_pred ceeeccccCCCcccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 935 TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 935 TvVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
||||+.||+|..+||||+||.++|||+|||||+||+||..++.|+||+|||+|||+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~ 273 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHL 273 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTG
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999995
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.6e-40 Score=382.33 Aligned_cols=250 Identities=25% Similarity=0.283 Sum_probs=200.8
Q ss_pred CCccEEEEEecCCC------CchhHHHHHHhhhccCeeeeeeeecccccc--chhHHHHHHHHHHHhcCccccccccccc
Q 001961 694 KELDLLIVILPDNN------GSLYGDLKRICETDLGLVSQCCLTKHVFKM--SKQYMANVALKINVKVGGRNTVLVDAIS 765 (990)
Q Consensus 694 ~~~~lvl~ilp~~~------~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~--~~q~~~Ni~lKiN~KlGG~N~~l~~~~~ 765 (990)
..++++||++|++. .++|..||++| .+.||+||||..+|+.+. ..+++.||++|||+||||+||.|...
T Consensus 109 ~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~-- 185 (404)
T cd04659 109 QGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD-- 185 (404)
T ss_pred CCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--
Confidence 46899999999875 68999999987 689999999999999754 57899999999999999999998642
Q ss_pred cCCCccCCCCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHH
Q 001961 766 RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMI 845 (990)
Q Consensus 766 ~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~ 845 (990)
...+|||||+||+|+..+....+++|+| .| .+.. +.+..+...++.+++- ....+.+++
T Consensus 186 ------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~-~~g~---g~~~~~~~~~~~~~~~--------~~~~~~~~l 244 (404)
T cd04659 186 ------SDPADLYIGIGFARSRDGEVRVTGCAQV---FD-SDGL---GLILRGAPIEEPTEDR--------SPADLKDLL 244 (404)
T ss_pred ------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---Ec-CCCC---EEEEecCccCCccccc--------CHHHHHHHH
Confidence 2368999999999997542223444433 33 2221 1222222333332210 001237899
Q ss_pred HHHHHHHHHHhCC-CCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCC
Q 001961 846 KELLISFRRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 924 (990)
Q Consensus 846 ~~~L~~f~~~~g~-~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~ 924 (990)
+++|+.|++.++. +|+||||||||+. .++|+++|++||.++. ++++||+|+||||+|||..+..+
T Consensus 245 ~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~--- 310 (404)
T cd04659 245 KRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP--- 310 (404)
T ss_pred HHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC---
Confidence 9999999999988 9999999999993 6999999999999874 89999999999999999975432
Q ss_pred CCCCCCCCCcceeeccccCCCcccEEEeeccCc--------cccccCCeeEEEecCCCCCHHHHHHHHHHhhcC
Q 001961 925 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI--------QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 990 (990)
Q Consensus 925 ~~~~~N~~pGTvVD~~It~p~~~dFyL~Sh~~~--------qGTarPthY~Vl~de~~~~~d~lq~lt~~LC~~ 990 (990)
...||++|||||.. .+||||++|... +||++|+| |++|+.+++.|+|+.+||.|||+
T Consensus 311 --~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~ 375 (404)
T cd04659 311 --NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKL 375 (404)
T ss_pred --CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhc
Confidence 12799999999954 599999999986 99999999 88999999999999999999986
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.89 E-value=3.5e-23 Score=202.47 Aligned_cols=133 Identities=34% Similarity=0.609 Sum_probs=109.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHHH
Q 001961 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (990)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~ 488 (990)
++|+|++.++.+.... .......+++++|+|++|.++|++. .+.|+|.+|++..+++.+|+.+ +|+.+||+|||+
T Consensus 1 ~~vld~~~~~~~~~~~---~~~~~~~~~~~~lkg~~V~~~~~~~-~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~ 75 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR---NNIKFQKKLERALKGLKVTTTYNNN-KRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFK 75 (135)
T ss_dssp HHHHHHHHHHCTCSSH---HHHHHHHHHHHHHTTEEEEETTTTC-CEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHH
T ss_pred CcHHHHHHHHHhhhcc---cchHHHHHHHHHcCCcEEEEecCCC-ceEEEEeEEECCCCcceeeecC-CCceEEhHHHHH
Confidence 4799999998764321 1122344599999999999999843 3999999999999999999865 489999999999
Q ss_pred HHcCCcccCCCCceEEeccCCc--CccccccceeeccCcccccCCCHHHHHHHHHhhcCC
Q 001961 489 ETYGFVIQHTQWPCLQVGNQQR--PNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQR 546 (990)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~~--~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~ 546 (990)
++||++|+||+||||+++...+ ++|||||||.|+++|++.+++...+++.|++.+|.+
T Consensus 76 ~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 76 EKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999999998777 999999999999999999999999999999999864
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.84 E-value=1.1e-20 Score=179.33 Aligned_cols=113 Identities=49% Similarity=0.879 Sum_probs=98.7
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHHH
Q 001961 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (990)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~ 488 (990)
++|+|+++++++.... ..+++.++.+++++|+|++|.++|+++..|.|+|.+|++.++.+.+|+.++.++++||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 2 QPVIEFLKEFLGFDTP-LGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred ccHHHHHHHHhCcccc-cccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 6899999999875432 245677888999999999999999865578999999999999899998654335899999999
Q ss_pred HHcCCcccCCCCceEEeccCCcCccccccceeec
Q 001961 489 ETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIV 522 (990)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~~~~ylP~Elc~i~ 522 (990)
++||++|+||+||||++|+..+++|+|||||.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999998888999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.83 E-value=2.2e-20 Score=176.72 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=98.0
Q ss_pred CccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHH
Q 001961 408 PLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYF 487 (990)
Q Consensus 408 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf 487 (990)
+++|+|+++++++.+...+.+.+.++.++.++|+|++|.++|++ .++.|+|.+|++.+|++. |+. .+|+++||+|||
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~-~~r~y~i~~i~~~~a~~~-f~~-~~~~~isv~dYf 77 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNP-LNRVYRPDGETRLKAPSQ-LKH-SDGKEITFADYF 77 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCC-CceEEEEeeEECCCChhh-eec-CCCCEEEHHHHH
Confidence 36899999999876554466777888999999999999999984 468999999999999887 763 347899999999
Q ss_pred HHHcCCcccCCCCceEEeccC---CcCccccccceeec
Q 001961 488 YETYGFVIQHTQWPCLQVGNQ---QRPNYLPMEVCKIV 522 (990)
Q Consensus 488 ~~~Y~i~L~~p~lP~l~~g~~---~~~~ylP~Elc~i~ 522 (990)
+++||++|+||+||||+++++ .+.+|||||||.|+
T Consensus 78 ~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 78 KERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 999999999999999999987 67899999999874
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.75 E-value=2.5e-18 Score=162.03 Aligned_cols=106 Identities=26% Similarity=0.388 Sum_probs=90.5
Q ss_pred ccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHHH
Q 001961 409 LPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFY 488 (990)
Q Consensus 409 ~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~ 488 (990)
.+|+|++.++++... ....+.+++++|+|++|.++|+ ++.|+|.+|+++.++.++|+.. ++..+||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~V~t~yn---~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~ 72 (117)
T cd02845 2 TTVLDRMHKLYRQET-----DERFREECEKELIGSIVLTRYN---NKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYK 72 (117)
T ss_pred eeHHHHHHHHHHhcc-----cHHHHHHHHHHcCCCEEEEeeC---CeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHH
Confidence 478999998876421 1246788999999999999996 6899999999999999999743 356899999999
Q ss_pred HHcCCcccCCCCceEEeccCC--------cCccccccceeecc
Q 001961 489 ETYGFVIQHTQWPCLQVGNQQ--------RPNYLPMEVCKIVE 523 (990)
Q Consensus 489 ~~Y~i~L~~p~lP~l~~g~~~--------~~~ylP~Elc~i~~ 523 (990)
++||+.|+||+||||+++.++ +++|||||||.++.
T Consensus 73 ~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 73 KQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 999999999999999998643 47999999999983
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.47 E-value=5.5e-14 Score=135.40 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=71.1
Q ss_pred HHHHhcccEEEEeecCCccceEEEecccCCCCcceeeeecCCCceeeHHHHHHHHcCCcccCCCCceEEecc--------
Q 001961 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN-------- 507 (990)
Q Consensus 436 l~~~LkGl~V~~~~~~~~~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~~~Y~i~L~~p~lP~l~~g~-------- 507 (990)
.++.|+|+.|.++|+ ++.|+|.+|+ +.+++++|+.++.++.+||+|||+++|||+|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~hn---~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL 102 (135)
T cd02844 27 CACDLKGSVVTAPHN---GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLL 102 (135)
T ss_pred cHHHhcCCEEEEcCC---CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceec
Confidence 467899999999997 6999999999 8999999986553367999999999999999999999999751
Q ss_pred ------------CCc---Cccccccceeecc
Q 001961 508 ------------QQR---PNYLPMEVCKIVE 523 (990)
Q Consensus 508 ------------~~~---~~ylP~Elc~i~~ 523 (990)
+.+ .++||||||.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 103 HNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccccceEEEeChHHhcccc
Confidence 011 3689999998763
No 14
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=2e-14 Score=114.34 Aligned_cols=52 Identities=62% Similarity=1.081 Sum_probs=42.0
Q ss_pred cccCccccCCCCCCcccCCCcEEEEeeeeeeeeeccCceEEeeeccccccccC
Q 001961 356 CPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEP 408 (990)
Q Consensus 356 ~~~gr~ff~~~~~~~~~lg~g~e~~~G~~~Svr~~~~~l~LniD~s~~~F~~~ 408 (990)
+.+||+||+++.. ..+|++|+|+|+|||+||||++++|+||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 3589999987644 378999999999999999999999999999999999975
No 15
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=99.32 E-value=5.1e-12 Score=110.16 Aligned_cols=99 Identities=63% Similarity=1.000 Sum_probs=69.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001961 87 TSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPE 166 (990)
Q Consensus 87 ~~~~~g~g~g~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (990)
+..|+++|||++...|+.++||+++||+ ....++++++..|+||||+.+++|++.+++++++++++++++++
T Consensus 3 p~eYqgrGRGgp~~qgG~~~yGggrgg~--------~ps~G~p~r~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e 74 (104)
T PF12764_consen 3 PPEYQGRGRGGPPQQGGRPGYGGGRGGG--------GPSGGGPPRPSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPE 74 (104)
T ss_pred CccccccCCCCCcccCCCCCCCCCCCCC--------CCCCCCCcCCCcchhhcccCCcccCcccCCCCcCcCCCccCCCC
Confidence 3456666665544333444443333322 11223456778899999999999998888888888888888877
Q ss_pred chh--hhhhhhcccCccccCCCCcCCCCC
Q 001961 167 LSE--VSQQFQQLSLPEEVSSSQVIQPAP 193 (990)
Q Consensus 167 ~~~--~~~~~~~~~~~~~~ss~~~~~~~p 193 (990)
+++ +++++++|++...+++.+.+.++|
T Consensus 75 ~s~~qv~QQfqqLsi~~e~s~sQaiQp~P 103 (104)
T PF12764_consen 75 PSTVQVTQQFQQLSIQQESSPSQAIQPAP 103 (104)
T ss_pred cchHHHHHHHHHHhhccCCCcccccCCCC
Confidence 666 489999999998887777776655
No 16
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.70 E-value=7.5e-08 Score=113.51 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCCC
Q 001961 27 GRGSQRPSERSAPPS 41 (990)
Q Consensus 27 ~~g~~~~~~~~~~~~ 41 (990)
|.|++|+++.+++.|
T Consensus 1160 gDGp~PPKmaryDnG 1174 (1282)
T KOG0921|consen 1160 GDGPGPPKMARYDNG 1174 (1282)
T ss_pred cCCCCCcccccccCC
Confidence 344444444444444
No 17
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.70 E-value=6.4e-08 Score=114.06 Aligned_cols=8 Identities=50% Similarity=1.066 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 001961 50 GYQGSGRG 57 (990)
Q Consensus 50 ~~~~~g~g 57 (990)
|+|+||+|
T Consensus 1202 GygsGGYG 1209 (1282)
T KOG0921|consen 1202 GYGSGGYG 1209 (1282)
T ss_pred CcCCCCCC
Confidence 33333333
No 18
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.58 E-value=7.7e-08 Score=89.45 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=58.7
Q ss_pred HHhcccEEEEeecCCc-cceEEEecccCCCCcceeeeecCCCceeeHHHHHHHHcCCcccCCCCceEEecc
Q 001961 438 KALRGVRVEVTHRGNM-RRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGN 507 (990)
Q Consensus 438 ~~LkGl~V~~~~~~~~-~r~~~I~gi~~~~a~~~~F~~~~~g~~iSV~eYf~~~Y~i~L~~p~lP~l~~g~ 507 (990)
+.+.|..|.+.|++.+ .++|+|.+|.++.++.++|+.+ + .+|++|||+++|||.|++++||+|.|+.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~--~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP--E-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC--C-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 5789999999998422 3899999999999999999743 3 6999999999999999999999999974
No 19
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.5e-05 Score=86.99 Aligned_cols=270 Identities=19% Similarity=0.185 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHhcC-cccCC-CCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCCchhHHHHH
Q 001961 639 SIARGFCFELAQMCYISG-MAFNP-EPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKR 716 (990)
Q Consensus 639 ~~~~~f~~~L~~~~~~~G-m~i~~-~p~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~~~Y~~iK~ 716 (990)
..+..|.+.|....+..+ +...- -+-+.....++.. ...|..+++++ ....++..-+-++...|+.+|+
T Consensus 356 ~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~~-kddl~~iIkei--------d~ee~~k~e~ykdd~~YailKr 426 (685)
T COG1431 356 TRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPKM-KDDLTKIIKEI--------DVEELKKQEMYKDDVKYAILKR 426 (685)
T ss_pred hHHHHHHHHHHHHHHhccchhhhcccceeeecccchhh-hccchhhhhhh--------hhhhhccccccccchHHHHHHh
Confidence 457888899999888776 43211 1222222222211 12233333332 1222334444566678999998
Q ss_pred HhhhccCeeeeeeeeccccccchhHHHHHHHHHHHhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCce
Q 001961 717 ICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSI 796 (990)
Q Consensus 717 ~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVsHp~~~~~~~pSi 796 (990)
.+.-|+||.++-.+..|.-+-++.|+|.|+-+|.+|+++.+-+. ...-+-|+|+||+.-+-+ ...+
T Consensus 427 ---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~--------~gpvDaivGlDvsr~~~g---n~tV 492 (685)
T COG1431 427 ---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG--------LGPVDAIVGLDVSRVSEG---NWTV 492 (685)
T ss_pred ---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc--------CCCccceeeeeeeEEeeC---CeEE
Confidence 45679999999999887778899999999999999999976542 122358999999987633 2334
Q ss_pred eEEEEeecCC--CccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHH--HhC-CCCceEEEEecCCC
Q 001961 797 AAVVASQDWP--EVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR--ATG-QKPQRIIFYRDGVS 871 (990)
Q Consensus 797 aavVaS~d~~--~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~--~~g-~~P~~IIiyRDGVs 871 (990)
-|++...| + ...+|.-.+.. .+++......+-+.+ +.+ ..-.+|++.|||-
T Consensus 493 ~gct~~f~-seg~l~eyy~t~tp----------------------a~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG~- 548 (685)
T COG1431 493 EGCTSCFV-SEGGLEEYYHTVTP----------------------ALGERLETSGRYLEKMNWRGFESRNLIVTLRDGK- 548 (685)
T ss_pred eeeeEEEe-ccCceEEeeecccC----------------------CccchhhhHHHHHHHHHhhhhhccCeeEEEecCc-
Confidence 44322223 2 22222221110 012222111111111 122 2447799999994
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCCCcceee------ccccCCC
Q 001961 872 EGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVD------SKICHPT 945 (990)
Q Consensus 872 egq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~~~N~~pGTvVD------~~It~p~ 945 (990)
+...|++++++.=..+ ...++++.+.|. +-+||..+.. .. |..|- +.+++|.
T Consensus 549 ------l~~~E~aavkeyg~el----gsn~ev~~i~kn-Np~vf~~e~~-------i~----g~f~~~~~s~~h~~~~~y 606 (685)
T COG1431 549 ------LVAGEIAAVKEYGGEL----GSNPEVNRILKN-NPWVFAIEGE-------IW----GAFVRLDGSTVHLCCSPY 606 (685)
T ss_pred ------cchHHHHHHHHHhhhc----CCChhhheeccc-CCeEEEecce-------ee----eEEEecCCcccccccCCC
Confidence 5578888777765544 345666666555 5559986542 11 33333 3333332
Q ss_pred cccEEEeeccCccccccCCeeEEEecCCCCCHHHHHHHHHHhh
Q 001961 946 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 988 (990)
Q Consensus 946 ~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lt~~LC 988 (990)
.....||-+|..-- .-|-.+.-|-|- |.|+|+
T Consensus 607 --------npv~~gT~~pi~~r--~~~g~l~~e~i~-lv~dLT 638 (685)
T COG1431 607 --------NPVRRGTPRPIALR--RRDGKLDGELIG-LVHDLT 638 (685)
T ss_pred --------CceecCCCcccccc--cccCccchhhHH-HHHHhh
Confidence 23456888886522 223334444444 888775
No 20
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=96.49 E-value=0.004 Score=55.33 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCccccC----CCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhh
Q 001961 125 SGGPTRSSQIPELHQA----TPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQ 173 (990)
Q Consensus 125 ~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (990)
...++.++|+..+||| .+.+..+++++.++++....++++++..++.++
T Consensus 40 ~~~PELHQAt~~~yQa~v~~qp~pSea~sss~p~e~s~~qv~QQfqqLsi~~e 92 (104)
T PF12764_consen 40 PSVPELHQATQVQYQAPVSSQPSPSEASSSSQPPEPSTVQVTQQFQQLSIQQE 92 (104)
T ss_pred CCcchhhcccCCcccCcccCCCCcCcCCCccCCCCcchHHHHHHHHHHhhccC
Confidence 3668999999999999 233334555544444444344566666665433
No 21
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.30 E-value=0.19 Score=52.50 Aligned_cols=6 Identities=67% Similarity=1.132 Sum_probs=2.7
Q ss_pred CCceEE
Q 001961 272 GRKSLY 277 (990)
Q Consensus 272 G~k~ly 277 (990)
|.|.||
T Consensus 157 GsKVLY 162 (317)
T KOG1596|consen 157 GSKVLY 162 (317)
T ss_pred CceEEE
Confidence 444444
No 22
>COG4371 Predicted membrane protein [Function unknown]
Probab=90.09 E-value=0.46 Score=49.51 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=4.3
Q ss_pred hhhhhhcccC
Q 001961 170 VSQQFQQLSL 179 (990)
Q Consensus 170 ~~~~~~~~~~ 179 (990)
+...+++++.
T Consensus 160 lk~eL~~iA~ 169 (334)
T COG4371 160 LKSELQRIAQ 169 (334)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 23
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=88.71 E-value=2.3 Score=42.65 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=7.4
Q ss_pred CCceEEEEEEec
Q 001961 227 DKDLHQYDVTIT 238 (990)
Q Consensus 227 ~~~iy~YdV~i~ 238 (990)
+.+|-+|.|+-+
T Consensus 158 N~tv~~~~~~~t 169 (217)
T smart00157 158 NITIKQHTVTTT 169 (217)
T ss_pred hhheeeeEeccc
Confidence 456777776543
No 24
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=85.22 E-value=15 Score=43.12 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHhhcCCchH
Q 001961 530 RLNERQITALLKVTCQRPHE 549 (990)
Q Consensus 530 kl~~~q~~~mik~a~~~P~~ 549 (990)
.|++++...++......|.+
T Consensus 587 dlteeev~kilde~vkd~s~ 606 (727)
T PF05642_consen 587 DLTEEEVKKILDELVKDPSD 606 (727)
T ss_pred ccCHHHHHHHHHHHhcCcch
Confidence 45555555555444444443
No 25
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=81.53 E-value=18 Score=43.44 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=7.9
Q ss_pred eEeeceEEEecC
Q 001961 215 IVKANHFFAELP 226 (990)
Q Consensus 215 ~l~tN~f~i~~~ 226 (990)
.|.+|-|+.++.
T Consensus 869 V~~~~n~Pf~v~ 880 (944)
T KOG4307|consen 869 VLSCNNFPFDVT 880 (944)
T ss_pred EEEecCCCcccc
Confidence 577777776554
No 26
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=73.93 E-value=23 Score=43.14 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=62.5
Q ss_pred eEEEEEeecCCCCCCCCCCceeEEEEeecCCCccc-eeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHHHH
Q 001961 776 TIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 854 (990)
Q Consensus 776 tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f~~ 854 (990)
.-|-++|+||-.. .-.|+++|.-.| ....+ .+=.+.+.. .+-.+|. .+|+|.|...++
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dDy--------------a~m~Evl~RR~~ 440 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYRRYNINS--ITGGDDY--------------AAMREVLRRRYS 440 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHHHh
Confidence 6788999999763 236888887766 43321 111122221 1113454 466776654443
Q ss_pred H-hC----CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee--cccccccccC
Q 001961 855 A-TG----QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK--RHHTRLFANN 918 (990)
Q Consensus 855 ~-~g----~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~K--rh~tRff~~~ 918 (990)
. .. .+|+-||| || +.||+..+ .+++.++. ....|.+|-..| ||.+++|..+
T Consensus 441 r~~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 441 SIQKKNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred hhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 3 11 47887776 76 56776543 45565553 212466777777 7778888654
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.49 E-value=13 Score=45.23 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.4
Q ss_pred cceEeeceEEEecC
Q 001961 213 RCIVKANHFFAELP 226 (990)
Q Consensus 213 ~i~l~tN~f~i~~~ 226 (990)
+-.+.-|+|=+++.
T Consensus 636 p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 636 PRDLSENCFWVKVN 649 (1102)
T ss_pred ccccCccceeeecc
Confidence 34455566665543
No 28
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=71.39 E-value=18 Score=41.38 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=6.2
Q ss_pred ecCCCceEEEEEE
Q 001961 224 ELPDKDLHQYDVT 236 (990)
Q Consensus 224 ~~~~~~iy~YdV~ 236 (990)
++....+--|+|+
T Consensus 181 d~rG~kVAsF~i~ 193 (641)
T KOG3915|consen 181 DLRGAKVASFTIE 193 (641)
T ss_pred eecCceeeEEEec
Confidence 3444445555553
No 29
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=68.92 E-value=26 Score=35.00 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCc-cceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV-TKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~-~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|.-|-++|+||-.. .-.|+++|.-.| ... .+.+=.+.+... +-.+|. .+|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 467899999999753 236888887666 322 122222333321 112555 5667777655
Q ss_pred HHH----hCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec--cccc
Q 001961 853 RRA----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKR--HHTR 913 (990)
Q Consensus 853 ~~~----~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Kr--h~tR 913 (990)
++. ...+|+-||| || +.||+. +.+++++++. .. |.+|-..|+ |.|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lg--l~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELG--LN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcC--CC--eEEEEEEeccccccc
Confidence 532 2368998877 77 456654 4466777663 33 455555554 5566
No 30
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=64.78 E-value=40 Score=38.67 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.2
Q ss_pred Cccccccce
Q 001961 511 PNYLPMEVC 519 (990)
Q Consensus 511 ~~ylP~Elc 519 (990)
++.+|+.-.
T Consensus 371 pvslppasv 379 (641)
T KOG3915|consen 371 PVSLPPASV 379 (641)
T ss_pred cccCCchhh
Confidence 445555433
No 31
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=62.59 E-value=37 Score=35.74 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred CCCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHH--HH
Q 001961 773 DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKEL--LI 850 (990)
Q Consensus 773 ~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~--L~ 850 (990)
..+.+|-|+|++|... ..-.+|++|. ++|++..-....++.-.-....|-.+ -.|+|. |.
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~~PYIPG~--------------LafRE~p~l~ 84 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGEVTFPYIPGL--------------LAFREGPPLL 84 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEecCCCCcchh--------------HHHhhHHHHH
Confidence 4578999999999751 2345666654 46666655555444332222223222 134444 32
Q ss_pred HHHHHhCCCCceEEEEecCCC
Q 001961 851 SFRRATGQKPQRIIFYRDGVS 871 (990)
Q Consensus 851 ~f~~~~g~~P~~IIiyRDGVs 871 (990)
.-.+.-..+|+-|||==.|+.
T Consensus 85 ~~~~~l~~~PDlilVDG~G~~ 105 (208)
T cd06559 85 EALEKLKTKPDLLLVDGHGIA 105 (208)
T ss_pred HHHHhCCCCCCEEEEeCCccc
Confidence 222223357888887555543
No 32
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=57.24 E-value=4.1e+02 Score=31.91 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCccccccc
Q 001961 744 NVALKINVKVGGRNTVLV 761 (990)
Q Consensus 744 Ni~lKiN~KlGG~N~~l~ 761 (990)
-|..||--|+=|.-+.+.
T Consensus 695 gl~qk~k~k~lgsgfeva 712 (727)
T PF05642_consen 695 GLIQKLKKKFLGSGFEVA 712 (727)
T ss_pred hHHHHHHHHhccCcceee
Confidence 455566666655555544
No 33
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=54.71 E-value=1e+02 Score=37.17 Aligned_cols=107 Identities=20% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.. .+-.+|. .+|.|.|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 366799999999753 236888887766 3322 1111222321 1113454 4666666544
Q ss_pred HHHh-C---CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001961 853 RRAT-G---QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (990)
Q Consensus 853 ~~~~-g---~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~ 917 (990)
++.. . .+|+-||| || +-||+..+ .+++.++. . .|.+|-..|+. .++|..
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg--~--~i~viglaK~~-e~i~~p 476 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLG--L--KIPLISIAKRE-EEIYVP 476 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEcCc-eEEEeC
Confidence 4331 1 47887776 76 56776543 45666663 2 47788888876 455543
No 34
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=53.31 E-value=1.3e+02 Score=36.89 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=62.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.||++|.-.| .... +.+=.+.+.......++|. .+|.|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 467899999999763 236888887776 4332 1222222221100012454 5667777555
Q ss_pred HHH--h--CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001961 853 RRA--T--GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (990)
Q Consensus 853 ~~~--~--g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 916 (990)
++. . +.+|+-||| || +.||+.. ..+++.++. ...+|.+|-..|+. .++|-
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg--~~~~i~v~gLaK~~-e~i~~ 471 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLNA--------AYSILKGLK--IENKVKVCALAKKE-ETIFL 471 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCceEEEEecCC-eEEEe
Confidence 443 1 247987776 76 5667654 345666553 22247788888866 33553
No 35
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=48.13 E-value=1.4e+02 Score=37.09 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccc-eeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.|+++|.-.| ....+ .+=.+.+... +-.+|. .+|.|.|...
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~ik~~--~~~dDy--------------~~m~Evl~RR 472 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYRKFKLRSF--EGSDDY--------------AAMREVVTRR 472 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999763 236888887766 33221 1111222211 113454 4667777555
Q ss_pred HHHh----CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001961 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (990)
Q Consensus 853 ~~~~----g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~ 917 (990)
++.- ..+|+-||| || +.||+.. ..+++.++. . .|.+|-..||. .++|..
T Consensus 473 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg--~--~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 473 YSGSLAEELPLPDLIVI--DG-GKGQVNS--------AWKVLQELG--L--SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEecc-cEEEeC
Confidence 4331 248987776 76 5667643 345666653 2 47788888844 556544
No 36
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=45.60 E-value=2e+02 Score=35.81 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=62.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.||++|.-.| .... +.+=.+.+.... .-++|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~~-~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAHD-TRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCCC-CCCchH--------------HHHHHHHHHH
Confidence 478999999999763 236888888776 3322 111122222210 113555 5677777655
Q ss_pred HHHh---CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001961 853 RRAT---GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (990)
Q Consensus 853 ~~~~---g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 916 (990)
++.. ..+|+-||| || +.||+. +.++++.++. . .|.+|-..||.-.-|+|
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l--~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALG--L--SIPLVGLAKRAEELFIP 564 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecccEEEeC
Confidence 5442 247987776 66 456654 3456666663 2 47788888866443344
No 37
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=45.30 E-value=1.4e+02 Score=37.04 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=56.9
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCccc-eeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTK-YAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~k-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.++++|.-.| ....+ .+=.+.+... + .+|. .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 467899999999763 235777877666 43321 1112222211 1 2454 4667776555
Q ss_pred HHHhCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001961 853 RRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (990)
Q Consensus 853 ~~~~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~K 908 (990)
++....+|+-||| || +.||+..+ .+++.++.- ...|.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAAV--------VRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCC--CCCccEEEEec
Confidence 4433347887776 66 46776543 456666532 22367777777
No 38
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=44.02 E-value=1.9e+02 Score=35.64 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.. .+-.+|. .+|+|.|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dDy--------------a~m~Evl~RR 440 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYRRYNIKG--VTGGDDY--------------AAMREVLTRR 440 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 336888887666 3322 1111122222 1112454 4667766554
Q ss_pred HHH----hCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001961 853 RRA----TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (990)
Q Consensus 853 ~~~----~g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~K 908 (990)
++. ...+|+-||| || +.||+..+ .++++++. . .|.+|-..|
T Consensus 441 ~~~~~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg--~--~i~v~glaK 485 (598)
T PRK00558 441 YSRLLKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELG--L--DIPVVGLAK 485 (598)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCC--C--CCcEEEEEe
Confidence 443 2347987776 77 56776543 45666653 2 366666666
No 39
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=39.98 E-value=2.3e+02 Score=35.07 Aligned_cols=107 Identities=16% Similarity=0.240 Sum_probs=60.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.||++|.-.| .... +.+=.+.+.. .+-.+|. .+|+|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236888887766 3322 1111222221 1113454 4666666544
Q ss_pred HHH---hC-CCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001961 853 RRA---TG-QKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (990)
Q Consensus 853 ~~~---~g-~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 916 (990)
++. .+ .+|+-||| || +.||+.. ..+++.++. .. .|.+|-..|+.. ++|-
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elg--l~-~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIG--IT-DQPLASIAKREE-IIYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CC-CCcEEEEecCCe-EEEC
Confidence 433 12 37987776 76 5677654 346666663 21 277887788764 4554
No 40
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=36.96 E-value=59 Score=34.10 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.9
Q ss_pred HHHHHHHhc
Q 001961 341 QVLDIVLRE 349 (990)
Q Consensus 341 q~Lniilr~ 349 (990)
|++|+|+|+
T Consensus 160 q~~~~lv~k 168 (221)
T KOG0037|consen 160 QFYNLLVRK 168 (221)
T ss_pred HHHHHHHHH
Confidence 455555555
No 41
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=36.47 E-value=3e+02 Score=33.75 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=62.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+... +-.+|. .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 236888888776 4332 11112223221 113555 5677777555
Q ss_pred HHHh----CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccc
Q 001961 853 RRAT----GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN 917 (990)
Q Consensus 853 ~~~~----g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~ 917 (990)
++.. ..+|+-||| || +.||+.. ..+++.++. . .|.+|-..|+. .++|..
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg--~--~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLSV--------GIEVRDRLG--L--NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEecC-cEEEcC
Confidence 5432 237987776 76 4567654 445666663 2 46788888875 556543
No 42
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=32.17 E-value=2.1e+02 Score=35.25 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=6.2
Q ss_pred CCCCCEEEEE
Q 001961 896 NYQPPVTFVV 905 (990)
Q Consensus 896 ~~~P~it~Iv 905 (990)
+--|.|+|-.
T Consensus 795 g~apr~~~~~ 804 (828)
T PF04094_consen 795 GSAPRLAFAL 804 (828)
T ss_pred CcCccccccC
Confidence 3457777654
No 43
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=31.76 E-value=5.1e+02 Score=29.02 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCccc---CC--CCccCCCCC--CchhHHHHHHHHHHHHHhhcCCCCCccEEEEEecCCCC-----chhHH
Q 001961 646 FELAQMCYISGMAF---NP--EPVIPPISA--RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNG-----SLYGD 713 (990)
Q Consensus 646 ~~L~~~~~~~Gm~i---~~--~p~~~~~~~--~~~~~~~~l~~~~~~a~~~~~~~~~~~lvl~ilp~~~~-----~~Y~~ 713 (990)
..|.+.+..+||+. .+ +|....... -|++-...|+++.+.+.+ .++.|++.|-|..+. ..+..
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~-----~~V~Fv~aisPg~~~~~s~~~d~~~ 92 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKA-----NGVDFVYAISPGLDICYSSEEDFEA 92 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHH-----TT-EEEEEEBGTTT--TSHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHH-----cCCEEEEEECcccccccCcHHHHHH
Confidence 45777888899874 22 244332211 144444567777766644 679999999998653 24566
Q ss_pred HHHHhhh--ccCeeeeeeeecccc-----------ccchhHHHHHHHHHHHhcCc
Q 001961 714 LKRICET--DLGLVSQCCLTKHVF-----------KMSKQYMANVALKINVKVGG 755 (990)
Q Consensus 714 iK~~~~~--~~gI~TQci~~~t~~-----------k~~~q~~~Ni~lKiN~KlGG 755 (990)
||...+. ++||-+=+|+.+-+. +...+--..|+..|+..|.-
T Consensus 93 L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~ 147 (306)
T PF07555_consen 93 LKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIK 147 (306)
T ss_dssp HHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhc
Confidence 7666664 689999999887765 22234455788888877663
No 44
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=31.15 E-value=2.2e+02 Score=35.08 Aligned_cols=8 Identities=25% Similarity=-0.247 Sum_probs=3.8
Q ss_pred EeeceEEE
Q 001961 216 VKANHFFA 223 (990)
Q Consensus 216 l~tN~f~i 223 (990)
+.-|.|..
T Consensus 202 ~~~~~~~~ 209 (828)
T PF04094_consen 202 VFFNRPPR 209 (828)
T ss_pred hhccCCcc
Confidence 33455544
No 45
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.60 E-value=1.3e+03 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCcccchhHHHHHHHHHHHHHhCCCCceEEEEecCCC
Q 001961 835 PVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVS 871 (990)
Q Consensus 835 ~~~~~~~~~m~~~~L~~f~~~~g~~P~~IIiyRDGVs 871 (990)
|..++.+..++++++..|...+... -++++-|.|+.
T Consensus 935 pe~dn~lS~k~r~~i~~i~~~r~~~-l~v~~~k~g~~ 970 (1007)
T KOG1984|consen 935 PELDNPLSRKVRNVISLIRRQRSSE-LPVVLVKQGLD 970 (1007)
T ss_pred cccCcHHHHHHHHHHHHHHhccccc-cccEEEecCCC
Confidence 4556667778888888887754432 33455555553
No 46
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=28.17 E-value=2.7e+02 Score=26.34 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=36.3
Q ss_pred CCCccEEEEEecCC-CCchhHHHHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHHh
Q 001961 693 GKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVK 752 (990)
Q Consensus 693 ~~~~~lvl~ilp~~-~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~K 752 (990)
+..|.|+++.+.++ .+..|...|...+.++||.+..+.... ....+-+...+.++|.-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 35688888777654 346799888888889999998887631 12345667777788753
No 47
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=26.82 E-value=3e+02 Score=28.35 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=43.6
Q ss_pred CCcccchhHHHHHHHHHHHHHh---CCCC--ceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001961 835 PVRGAVSGGMIKELLISFRRAT---GQKP--QRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQK 908 (990)
Q Consensus 835 ~~~~~~~~~m~~~~L~~f~~~~---g~~P--~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~K 908 (990)
|..++.+...+..+++.|.... ...| ..|||+=||.....- . -...|.+|.+++.....-.|.||.|..
T Consensus 78 p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~-~----~~~~i~~a~~~l~~~~~i~i~~v~vG~ 151 (199)
T cd01457 78 PDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKD-A----VERVIIKASDELDADNELAISFLQIGR 151 (199)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHH-H----HHHHHHHHHHhhccccCceEEEEEeCC
Confidence 3445667788888887776532 2344 889999999886421 1 124566777766544445677777754
No 48
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=25.98 E-value=3.9e+02 Score=32.82 Aligned_cols=104 Identities=21% Similarity=0.247 Sum_probs=59.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCceeEEEEeecCCCcc-ceeeEEEEccCChhhhhhhhccccCCCcccchhHHHHHHHHHH
Q 001961 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT-KYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 852 (990)
Q Consensus 774 ~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~-ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~m~~~~L~~f 852 (990)
.|..|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+.. -.+|. .+|.|.|...
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~----~~dD~--------------~~m~Evl~RR 430 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE----RNDDY--------------ANMRELVRWR 430 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC----CCChH--------------HHHHHHHHHH
Confidence 367899999999753 236888887766 4332 1111222322 13555 4566666444
Q ss_pred HHHh------CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001961 853 RRAT------GQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 916 (990)
Q Consensus 853 ~~~~------g~~P~~IIiyRDGVsegq~~~vl~~E~~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 916 (990)
++.- +.+|+-||| || +-||+.. ..+++.++. . .|.+|-..|+. .++|-
T Consensus 431 ~~r~~~~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~elg--~--~i~v~glaK~~-e~i~~ 484 (577)
T PRK14668 431 AERAVEGRDDRPDPDLLLI--DG-GDGQLGA--------ARDALAETG--W--DVPAIALAKAE-ELVVT 484 (577)
T ss_pred HHhhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEcCC-eEEEc
Confidence 4331 247987776 66 4566543 456666663 2 47788777865 34543
No 49
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=25.17 E-value=75 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCCceEEE
Q 001961 847 ELLISFRRATGQKPQRIIF 865 (990)
Q Consensus 847 ~~L~~f~~~~g~~P~~IIi 865 (990)
..+..|+..|+++|..|-|
T Consensus 15 ~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHcCCCCCeeeC
Confidence 4678999999999998753
No 50
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=24.11 E-value=3.2e+02 Score=29.09 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=19.6
Q ss_pred cCCCCCCCCCCccCcCCCCCCCCCCcceEeeceEEEecC-CCceE
Q 001961 188 VIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP-DKDLH 231 (990)
Q Consensus 188 ~~~~~p~~~~~~~~p~RP~~Gt~G~~i~l~tN~f~i~~~-~~~iy 231 (990)
.+-..|++...+. ||+ .+.++..|+=++-+. +-.||
T Consensus 147 ii~~~Pl~PIIV~---~P~-----~P~~~~~~~Pp~VVk~~PVi~ 183 (277)
T PF05387_consen 147 IIIHQPLPPIIVH---QPG-----APPKVLNNHPPLVVKPAPVIY 183 (277)
T ss_pred EEEecCCCCeEec---CCC-----CCchhhcCCCCeeecCCceEE
Confidence 3344555555544 774 455666666665554 34444
No 51
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=23.84 E-value=1.7e+02 Score=36.17 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.9
Q ss_pred ccccCeEEc
Q 001961 569 AREFGIKIS 577 (990)
Q Consensus 569 l~~fGi~i~ 577 (990)
...+|.++.
T Consensus 583 g~ayGFklq 591 (830)
T KOG1923|consen 583 GAAYGFKLQ 591 (830)
T ss_pred ccccceecc
Confidence 455566553
No 52
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.54 E-value=2.3e+02 Score=31.30 Aligned_cols=74 Identities=24% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001961 10 PSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSE 89 (990)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~g~ggg~~~~~g~g~~~~~~~gg~gg~~~~~g~gg~~~~~~g~~~~ 89 (990)
++.+..+....+.-..+.++.+.. +.+..+..|..+-+.-..+.++.-+.++|..||++| |+-++|++..++
T Consensus 27 P~p~f~~s~s~~~~~T~~G~~~~~---~~g~s~~~g~~~mN~f~~~~~~~~G~Gyg~YGgGyg-----g~fGgGyN~~~~ 98 (362)
T KOG3875|consen 27 PRPGFQSSVSNGNANTGPGIYGNS---NYGISYVTGHYSMNTFVPGSGYNYGSGYGPYGGGYG-----GGFGGGYNRFGP 98 (362)
T ss_pred CCccccccccCCcccCCCCccccc---cCCCccccCCcccccccCCcccccCCCCCCcCCCcC-----cccCcccccccc
Q ss_pred CC
Q 001961 90 YQ 91 (990)
Q Consensus 90 ~~ 91 (990)
|+
T Consensus 99 ~g 100 (362)
T KOG3875|consen 99 YG 100 (362)
T ss_pred cc
No 53
>PLN03138 Protein TOC75; Provisional
Probab=23.32 E-value=60 Score=40.84 Aligned_cols=28 Identities=46% Similarity=0.731 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001961 55 GRGWGPPSQQGGRGGYGGGRGRGGPQQQ 82 (990)
Q Consensus 55 g~g~~~~~~~gg~gg~~~~~g~gg~~~~ 82 (990)
+.+++.+++.||+|++||++|+|+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (796)
T PLN03138 78 GGGGGGGGGFGGFGGGGGGGGGGGGGWR 105 (796)
T ss_pred ccCcCCCCCcCCCCCCCCCCCCCCcccc
No 54
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.54 E-value=1.8e+02 Score=30.57 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=3.7
Q ss_pred ceEeeceEE
Q 001961 214 CIVKANHFF 222 (990)
Q Consensus 214 i~l~tN~f~ 222 (990)
|.+..|+|.
T Consensus 96 crlmI~mfd 104 (221)
T KOG0037|consen 96 CRLMISMFD 104 (221)
T ss_pred HHHHHHHhc
Confidence 444444443
No 55
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=21.21 E-value=1.2e+03 Score=26.27 Aligned_cols=6 Identities=50% Similarity=0.778 Sum_probs=2.7
Q ss_pred CCCCCc
Q 001961 208 GSTGTR 213 (990)
Q Consensus 208 Gt~G~~ 213 (990)
++.|-+
T Consensus 326 ~s~Gpp 331 (498)
T KOG4849|consen 326 GSMGPP 331 (498)
T ss_pred CcCCCC
Confidence 454533
No 56
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.76 E-value=4e+02 Score=29.44 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=38.6
Q ss_pred CCccEEEEEecCC-CCchhHHHHHHhhhccCeeeeeeee-ccccccchhHHHHHHHHHH
Q 001961 694 KELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLT-KHVFKMSKQYMANVALKIN 750 (990)
Q Consensus 694 ~~~~lvl~ilp~~-~~~~Y~~iK~~~~~~~gI~TQci~~-~t~~k~~~q~~~Ni~lKiN 750 (990)
..|.|.++.+.++ .+..|.+.|...+.++||.+..+.. +++ ...-+.+.+.++|
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN 85 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMN 85 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHh
Confidence 4688888777654 4568999998888999999987754 222 2333567777877
No 57
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.64 E-value=4.2e+02 Score=29.62 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCccEEEEEecCC-CCchhHHHHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHH
Q 001961 693 GKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (990)
Q Consensus 693 ~~~~~lvl~ilp~~-~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~ 751 (990)
+..|.|+++.+.++ .+..|.+.|...+.+.||.+-.+.... .....-+.+++.++|.
T Consensus 31 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 31 GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPA--DTSQARLLALIAELNA 88 (301)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 34688888777654 456799999888889999997765431 1223345567777763
No 58
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.51 E-value=4e+02 Score=29.66 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCccEEEEEecCC-CCchhHHHHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHH
Q 001961 694 KELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (990)
Q Consensus 694 ~~~~lvl~ilp~~-~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~ 751 (990)
..|.|+++.+.++ .+..|.+.|...+.++||.+..+....- ....-+.+++.++|.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (293)
T PRK14185 30 KRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESD--VTEEELLAKVRELNQ 86 (293)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 5688888777654 4567999988888899999988754321 123345567777774
No 59
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=20.35 E-value=1.5e+02 Score=35.35 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=3.6
Q ss_pred eEEEEEEe
Q 001961 230 LHQYDVTI 237 (990)
Q Consensus 230 iy~YdV~i 237 (990)
+.-|+|-.
T Consensus 370 ~nEyevvY 377 (574)
T PF07462_consen 370 INEYEVVY 377 (574)
T ss_pred CCccceEE
Confidence 44455443
No 60
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.33 E-value=4.4e+02 Score=29.19 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCccEEEEEecCC-CCchhHHHHHHhhhccCeeeeeeeeccccccchhHHHHHHHHHHH
Q 001961 693 GKELDLLIVILPDN-NGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINV 751 (990)
Q Consensus 693 ~~~~~lvl~ilp~~-~~~~Y~~iK~~~~~~~gI~TQci~~~t~~k~~~q~~~Ni~lKiN~ 751 (990)
+..|.|+++.+.++ .+..|.+.|...+.++||.+..+....- ....-+.+.+.++|.
T Consensus 28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 28 GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNH 85 (282)
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 35678887777654 4567999988888899999988865421 123335577777774
Done!