BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001962
         (990 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F4J8D3|TPLAT_ARATH Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1
          Length = 1176

 Score = 1669 bits (4321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/1006 (82%), Positives = 914/1006 (90%), Gaps = 18/1006 (1%)

Query: 1    MLDKSDNVSKVAFESVGRLFQEFESKRMSRLAGDKLVDSENSLAIRSNWVSAMVNFVWKK 60
            MLDKSD VSKVAFESVGRLFQEF+SKRMSRLAGDKLVDSENSLAIRS WVS+MV+ VW+K
Sbjct: 173  MLDKSDAVSKVAFESVGRLFQEFDSKRMSRLAGDKLVDSENSLAIRSKWVSSMVDIVWRK 232

Query: 61   RSALMARSLVLPIESFRATVFPIVYSVKAVASGRVDVIRRLSKDSNGVNG---TQVDSNA 117
            RSALMARSLVLP+E+FRATVFP+V++VKAVASG V+VIR+LSK S+       T VDSNA
Sbjct: 233  RSALMARSLVLPVETFRATVFPLVFAVKAVASGSVEVIRQLSKASSAAAAANATVVDSNA 292

Query: 118  EKLVGVSDVVTHLVPFLASSLDPAVIFEVGINMLYLADVPGGKTEWASQSIIAILTLWDR 177
            EKLVGVSD+VTHL PFLASSLDPA+IFEVGINMLYLADV GGK EWASQSIIAILTLWDR
Sbjct: 293  EKLVGVSDLVTHLAPFLASSLDPALIFEVGINMLYLADVAGGKPEWASQSIIAILTLWDR 352

Query: 178  QEFSSARESIVRAVVTNLHLLDLHLQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 237
            QEFSSARESIVRAVVTNLHLLDLH+QVSLFRRLLLMVRNLRAESDRMHALACICRTALCV
Sbjct: 353  QEFSSARESIVRAVVTNLHLLDLHMQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 412

Query: 238  DLFAKESVRRGQKPLPGTDIASLFEDPRIRDDLNSVTSKSLFREELVASLVESCFQLSLP 297
             LFA+ES RRGQKPLPGTDI SLFED RI+DDLNSVTSKSLFREELVA LVESCFQLSLP
Sbjct: 413  HLFARESARRGQKPLPGTDIISLFEDARIKDDLNSVTSKSLFREELVAMLVESCFQLSLP 472

Query: 298  LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKL 357
            LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYA+DCYLKL
Sbjct: 473  LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKL 532

Query: 358  LVRLCHIYDTRGGVKRVKDGASQDQILNETRLQNMQRQLVKDLHEVNTPRMLARLIWAIA 417
            LVRLCHIYDTRGGVKR+KDGASQDQILNETRLQN+QR+LVKDL EVNTPR+L RLIW IA
Sbjct: 533  LVRLCHIYDTRGGVKRLKDGASQDQILNETRLQNLQRELVKDLQEVNTPRILGRLIWTIA 592

Query: 418  EHIDLEGLDPLLADDPEDPLNIIISNIHKVLFNVDSSANTSNRLQDVQAVLISAQRLGSR 477
            EHIDLEGLDPLLADDP+DPLNIII+NIHKVLFN+D++A TSNRLQDVQAVL+ AQR+GSR
Sbjct: 593  EHIDLEGLDPLLADDPDDPLNIIIANIHKVLFNLDAAATTSNRLQDVQAVLLCAQRMGSR 652

Query: 478  NPRAGQLLTKELEEFRNSTLADSVNKHQCRLILQRIKYASSHPENKWACVNEARGDYPFS 537
            + RAGQLLTKELEE+RN   AD+V+KHQ RLILQRIKY S+ PE KWA V+E RGDYPFS
Sbjct: 653  HARAGQLLTKELEEYRNHAAADTVSKHQTRLILQRIKYVSNLPERKWAGVSETRGDYPFS 712

Query: 538  HHKLTVQFYEASGAQDRKLEGLVHKAILELWRPNPSELTLLLTKGIEATSLKASPTAYTL 597
            HHKLTVQFYE S AQDRKLEGL+HKAILELWRP P+ELTL LTKG+++TS+K  PTAY L
Sbjct: 713  HHKLTVQFYEPSAAQDRKLEGLIHKAILELWRPKPTELTLFLTKGVDSTSIKVPPTAYPL 772

Query: 598  TGSSDPCYVEAYHLADSSDGKITLHLKVLNLTELELNRVDIRVGLSGALYFMNGSPQAVR 657
            TGSSDPCY+EAYHLAD++DG++TLHLK++NLTELELNRVDIRVGLSGALYFM+GSPQAVR
Sbjct: 773  TGSSDPCYIEAYHLADTNDGRVTLHLKIINLTELELNRVDIRVGLSGALYFMDGSPQAVR 832

Query: 658  QLRNLVSQDPVICSVTVGVSHFERCAFWVQVLYYPFHGSGAIGDYEGDYAEEDPQIMRQK 717
            QLRNLVSQDPV CSVTVGVS FERC FWVQVLYYPF   GA G+Y+GDY EEDPQIM+QK
Sbjct: 833  QLRNLVSQDPVQCSVTVGVSQFERCGFWVQVLYYPFR--GARGEYDGDYIEEDPQIMKQK 890

Query: 718  RSARPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEGSGF 777
            R ++ ELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPA+ EYTGTY+YEGSGF
Sbjct: 891  RGSKAELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAVAEYTGTYMYEGSGF 950

Query: 778  KATAAQQYGTSPFFSGLKSLSSKPFHIVCSHIIQAVAGFQLCYAAKTWYGGFVGMMIFGA 837
             ATAAQQYG SPF SGLKSLSSKPFH VCSHII+ VAGFQLCYAAKTW+GGFVGMMIFGA
Sbjct: 951  MATAAQQYGASPFLSGLKSLSSKPFHRVCSHIIRTVAGFQLCYAAKTWHGGFVGMMIFGA 1010

Query: 838  SEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGSDLQGWLDDLTDGGVEYMPEDEVKAS 897
            SEVSRN+DLGDETTTMMCKFVVRAS++SITK+I SD+QGW DDLTDGGVEYMPEDEVKA+
Sbjct: 1011 SEVSRNMDLGDETTTMMCKFVVRASEASITKQIESDIQGWCDDLTDGGVEYMPEDEVKAT 1070

Query: 898  AAERLRISMERIALLKAARPKKTPK------------TDEEEENEVEEEEEDKKKNKEDG 945
            AAE+L+ISMERIALLKAA+PKKT K             +EE+++E  +E+++K++ K+  
Sbjct: 1071 AAEKLKISMERIALLKAAQPKKTSKIEEESENEEEEEGEEEDDDEEVKEKKEKEEGKDKE 1130

Query: 946  EEDGKAKGPSTLSKLTAEEAEHLALQAAVLQEWHMRCKDRS-AKVN 990
            E+  K K   T SKLTAEE EH+ALQAAVLQEWH+ CKDR   KVN
Sbjct: 1131 EKKKKEKEKGTFSKLTAEETEHMALQAAVLQEWHILCKDRKYTKVN 1176


>sp|Q9ZUH5|SDR2B_ARATH Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana
           GN=SDR2b PE=1 SV=1
          Length = 296

 Score = 37.7 bits (86), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 25/173 (14%)

Query: 243 ESVRRGQKPLPGTDIASLFEDPRIRDDLNSVTSKSLFREELVASLVESCF-QLSLPLPEQ 301
           E+V   +K L  +D + +F    + D + SVTS        +A  V++ F +L + +   
Sbjct: 45  EAVETLKKELEISDQSIVFHQLDVSDPV-SVTS--------LAEFVKTHFGKLDILI--- 92

Query: 302 KNSGMESRV--IGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKLLV 359
            N+G+   +  + AL  GTG     W E   E  E+   C+K +  G     + ++ LL 
Sbjct: 93  NNAGVGGVITDVDALRAGTGKEGFKWEETITETYELAEECIKINYYGPKRMCEAFIPLLQ 152

Query: 360 -----RLCHIYDTRGGVKRV-----KDGASQDQILNETRLQNMQRQLVKDLHE 402
                R+ ++    G VK +     K   S  + L E R+  +  QL+ DL E
Sbjct: 153 LSDSPRIINVSSFMGQVKNLVNEWAKGILSDAENLTEVRIDQVINQLLNDLKE 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,457,417
Number of Sequences: 539616
Number of extensions: 15025933
Number of successful extensions: 96061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 83755
Number of HSP's gapped (non-prelim): 7087
length of query: 990
length of database: 191,569,459
effective HSP length: 127
effective length of query: 863
effective length of database: 123,038,227
effective search space: 106181989901
effective search space used: 106181989901
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)