Query 001962
Match_columns 990
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 06:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g30_A AP-2 complex subunit be 77.0 2.4 8.3E-05 42.9 5.0 122 717-874 125-252 (258)
2 2ca6_A RAN GTPase-activating p 74.5 1 3.4E-05 44.2 1.5 8 901-908 324-331 (386)
3 3hs8_A Adaptor protein complex 62.3 13 0.00043 38.1 6.5 112 734-872 150-267 (273)
4 1pzd_A Coatomer gamma subunit; 60.1 1.7E+02 0.0058 30.8 14.5 234 582-871 73-318 (322)
5 1r4x_A Gamma1-COP, coatomer ga 59.3 1.7E+02 0.0058 30.4 15.4 234 582-871 26-271 (275)
6 1xl3_C Protein type A, secreti 57.9 11 0.00038 34.3 4.6 68 164-235 5-77 (92)
7 1kyf_A Alpha-adaptin C; protei 41.3 51 0.0017 32.8 6.8 113 734-872 124-241 (247)
8 3j21_k Acidic ribosomal protei 29.6 11 0.00038 39.5 0.0 59 727-794 121-189 (339)
9 2ly8_A Budding yeast chaperone 23.6 1E+02 0.0034 29.0 5.1 67 316-401 18-89 (121)
10 3bs6_A Inner membrane protein 23.5 73 0.0025 31.5 4.5 41 593-633 92-133 (280)
11 2a6z_A EMP47P (FORM2); beta sa 23.3 31 0.0011 33.9 1.8 30 519-548 188-221 (222)
12 2a6y_A EMP47P (FORM1); beta sa 20.8 32 0.0011 34.5 1.3 30 519-548 195-228 (256)
No 1
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=76.96 E-value=2.4 Score=42.91 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=74.1
Q ss_pred hcccCCCCCCceEEeeccccccccccccc-CcCChhhhhhhcCCCcceEEEEEEEeeecCcchhhhh----hhcCCCccc
Q 001962 717 KRSARPELGEPVILRCQPYKIPLTELLLP-HKISPVEFFRLWPSLPAIVEYTGTYIYEGSGFKATAA----QQYGTSPFF 791 (990)
Q Consensus 717 r~~~rpeygepViLRCqpYkIPLtELLlP-~klSpveFfRLWpsLPAive~tgay~yEG~G~kaa~a----a~~g~SP~l 791 (990)
-++++...| ...-. -.|||-.|+.| -+|+..+|...|.++|..-|++..++ +......++ ++...
T Consensus 125 QVAIKtn~~-vfYF~---~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE~~~~i~--~~~~~~~~i~~kL~~~ni---- 194 (258)
T 2g30_A 125 QVAVKNNID-VFYFS---CLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIK--ECHLNADTVSSKLQNNNV---- 194 (258)
T ss_dssp EEEEECSSC-EEEEE---EECCGGGGBCSCCCCCHHHHHHHHHHSCGGGCEEEEET--TCCCCHHHHHHHHHHTTC----
T ss_pred eeeeecCCc-eEEEE---eecCHHHhcCCcCccCHHHHHHHHhhCCCccceeEecc--cCcCCHHHHHHHHHHCCe----
Confidence 456666664 33333 46899999988 89999999999999999888775544 433333211 33333
Q ss_pred cccccccCCCcceeeceeeeeccch-hhhhhhhccccceeeEEEeeeccccccccCCCcceeeEEEEEEEcCCccchhhc
Q 001962 792 SGLKSLSSKPFHIVCSHIIQAVAGF-QLCYAAKTWYGGFVGMMIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEI 870 (990)
Q Consensus 792 SGLkslSskPFH~vcshiLRtvagF-Q~CyAAkTW~GDfVgMmiFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI 870 (990)
-.|+. |.+.|- .++|++||--|.++++=+ .....+ + -|++.+|+++.++..-|
T Consensus 195 -----------f~Va~---r~~~~q~~ly~S~kt~n~i~vL~el-~~~~~~-----~------~v~l~vks~~~~i~~li 248 (258)
T 2g30_A 195 -----------YTIAK---RNVEGQDMLYQSLKLTNGIWILAEL-RIQPGN-----P------NYTLSLKCRAPEVSQYI 248 (258)
T ss_dssp -----------EEEEE---EEETTEEEEEEEEEBTTSCEEEEEE-EECSSC-----S------SEEEEEEESSGGGHHHH
T ss_pred -----------EEEEe---ecCCCCceEEEEEEccCCcEEEEEE-EEccCC-----C------cEEEEEecCCchHHHHH
Confidence 22221 222222 477889996666544433 222221 1 37899999998887666
Q ss_pred ccch
Q 001962 871 GSDL 874 (990)
Q Consensus 871 ~sDl 874 (990)
...+
T Consensus 249 ~~~~ 252 (258)
T 2g30_A 249 YQVY 252 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=74.55 E-value=1 Score=44.21 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001962 901 RLRISMER 908 (990)
Q Consensus 901 klkrsme~ 908 (990)
.++..+..
T Consensus 324 ~l~~~l~~ 331 (386)
T 2ca6_A 324 EIREVFST 331 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 33333333
No 3
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=62.30 E-value=13 Score=38.05 Aligned_cols=112 Identities=15% Similarity=0.328 Sum_probs=62.4
Q ss_pred cccccc--ccccccCcCChhhhhhhcCCCc-ceEEEEEEEeeecCcchhhhh---hhcCCCccccccccccCCCcceeec
Q 001962 734 PYKIPL--TELLLPHKISPVEFFRLWPSLP-AIVEYTGTYIYEGSGFKATAA---QQYGTSPFFSGLKSLSSKPFHIVCS 807 (990)
Q Consensus 734 pYkIPL--tELLlP~klSpveFfRLWpsLP-Aive~tgay~yEG~G~kaa~a---a~~g~SP~lSGLkslSskPFH~vcs 807 (990)
..|+|+ +.-+.|..++..+||.-|..|. .--|..-.+.-.......++. ..-|.. .+.| ....|-..|++
T Consensus 150 ~LkLPi~~~kf~~p~~~~~~~F~~rWkql~~~~~E~q~v~~~~~~~~~~~v~~~l~~lg~~-vl~g---~Dpn~~n~v~A 225 (273)
T 3hs8_A 150 SVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSA-LLEE---VDPNPANFVGA 225 (273)
T ss_dssp EEECCCCGGGGEEECCCCHHHHHHHHHHCCSGGGEEEEEEECSSCCCHHHHHHHHHHHTCE-ECTT---SSSSTTSEEEE
T ss_pred EEecceehhheeccccCCHHHHHHHHHhcCCCCceEEEEecCCCCCCHHHHHHHHHhCCeE-EeCC---CCCCcccEEEE
Confidence 345554 5666799999999999999988 444554444321111112222 222221 2233 34566666766
Q ss_pred eeeeeccchhhhhhhhccccceeeEEEeeeccccccccCCCcceeeEEEEEEEcCCccchhhccc
Q 001962 808 HIIQAVAGFQLCYAAKTWYGGFVGMMIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGS 872 (990)
Q Consensus 808 hiLRtvagFQ~CyAAkTW~GDfVgMmiFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI~s 872 (990)
=++.|-. |.+ .+...-|.+. ...+|++.+|++++.+.+.|..
T Consensus 226 Gi~~t~~------------g~~---gcLvRle~n~--------~~~~~rlTVRSt~~~vs~~i~~ 267 (273)
T 3hs8_A 226 GIIHTKT------------TQI---GCLLRLEPNL--------QAQMYRLTLRTSKDTVSQRLCE 267 (273)
T ss_dssp EEEECSS------------CEE---EEEEEEEEET--------TTTEEEEEEEESSHHHHHHHHH
T ss_pred EEEEeCC------------CCE---EEEEEEEEcc--------cCCEEEEEEEECChhHHHHHHH
Confidence 6666542 222 1222333321 1137899999999997776643
No 4
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=60.05 E-value=1.7e+02 Score=30.78 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=133.1
Q ss_pred CCCccccccCCceecccCCCCccEEEee-eeccCCCCeEEEEEEEec-CCcccccceeeEEecceeeecccCchHHHHHh
Q 001962 582 GIEATSLKASPTAYTLTGSSDPCYVEAY-HLADSSDGKITLHLKVLN-LTELELNRVDIRVGLSGALYFMNGSPQAVRQL 659 (990)
Q Consensus 582 gi~~t~~k~pp~avtLSGSSDPCyVEAy-HladP~~~RlTLHLKv~N-lte~eL~rvdvrVGL~GAL~fmDGs~QaVrqL 659 (990)
+.|. ++|+-|.++.||-+--=--|..- |.. ...|-|.+.|-| ++++-|..|.|.+.....+.. ...-.+
T Consensus 73 ~lG~-l~kSS~~~v~LTE~EtEYvV~~vKHiF---~~hiVlQF~~~NTL~dq~LenV~V~~~~~~~~~~-----~~~ip~ 143 (322)
T 1pzd_A 73 GLGP-LFKSSPEPVALTESETEYVIRCTKHTF---TDHMVFQFDCTNTLNDQTLENVTVQMEPSEAYEV-----LCYVPA 143 (322)
T ss_dssp TCCC-CCEECSSCEECSCTTSSEEEEEEEEEC---SSEEEEEEEEEECCTTEEEEEEEEEEEESSSCEE-----EEEECE
T ss_pred HcCc-ccccCCCcccccCCCceeEEEEEEEec---cCcEEEEEEEEEccCceEEeeEEEEEecCCCceE-----EEEEEH
Confidence 3344 78888788999988655555554 443 357889999997 677788877776665544222 122236
Q ss_pred cccccCCceeeeeEeeeec--ccccc-eeeeeeeccccC-CCCCCCCC-CCccccchhHHhhhcccCCCCCCceEEeecc
Q 001962 660 RNLVSQDPVICSVTVGVSH--FERCA-FWVQVLYYPFHG-SGAIGDYE-GDYAEEDPQIMRQKRSARPELGEPVILRCQP 734 (990)
Q Consensus 660 ~~L~sqdpv~~svtvgVS~--ferc~-l~vQvLyyPf~G-s~G~g~~E-~D~~~E~~~~~rqr~~~rpeygepViLRCqp 734 (990)
..|..+.|-.|-|-+.... -.... -.-.+|-|.-.- --.+|.-| +-|.||=+ =|.+-|...-
T Consensus 144 ~~L~~~~~g~~yv~~~~~~~~~~~~~~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~-------------lEdlel~~~D 210 (322)
T 1pzd_A 144 RSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYV-------------LEDLEVTIAD 210 (322)
T ss_dssp EEECBTCCEEEEEEEECCSSCTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEE-------------CCCEEECGGG
T ss_pred hHCCCCCCeeEEEEEEecCCCCCccceEEEEEEEEEEEeecCCCCCcCCCCccceEE-------------ccceeechhh
Confidence 7788888888877776542 11111 112245444311 01122211 11233323 2356666666
Q ss_pred cccccccccccCcCChhhhhhhcCCCcceEEEEEEEeeec-Ccchhhhh---hhcCCCccccccccccCCCcceeeceee
Q 001962 735 YKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEG-SGFKATAA---QQYGTSPFFSGLKSLSSKPFHIVCSHII 810 (990)
Q Consensus 735 YkIPLtELLlP~klSpveFfRLWpsLPAive~tgay~yEG-~G~kaa~a---a~~g~SP~lSGLkslSskPFH~vcshiL 810 (990)
|-+|+ .-.+|-..|.+++.-.|.+.+|..-+ ..+..|+. .--|+.|.-. -+ .+| ...-+|.|
T Consensus 211 ~i~p~---------~~~nF~~~We~l~~~~E~~~tf~L~~~~sL~~AV~~l~~~Lgm~p~e~-sd---~v~-~~~~sHtL 276 (322)
T 1pzd_A 211 HIQKV---------MKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGNIVKFLGMHPCER-SD---KVP-DNKNTHTL 276 (322)
T ss_dssp GEEEC---------CCSCHHHHHHHHCSTTCEEEEEEESSCCCHHHHHHHHHHHHTCEECTT-TT---CCC-SSCSEEEE
T ss_pred Eeeec---------ccCchHHHHHhcCCccceEEEEEccCcCcHHHHHHHHHHhcCCccccC-CC---cCC-CCCcceEE
Confidence 66662 22489999999987788889988743 44655554 3444444321 11 122 33367877
Q ss_pred eeccchhhhhhhhccccceeeE-EEeeeccccccccCCCcceeeEEEEEEEcCCccchhhcc
Q 001962 811 QAVAGFQLCYAAKTWYGGFVGM-MIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEIG 871 (990)
Q Consensus 811 RtvagFQ~CyAAkTW~GDfVgM-miFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI~ 871 (990)
.=.| +-|-|.-|+. +-++.+. ...+|+.+|+.|+.+.+-|.
T Consensus 277 ~LsG--------~~~gg~~VLvr~rl~~~~------------gv~~kl~vRS~~~~v~~~v~ 318 (322)
T 1pzd_A 277 LLAG--------VFRGGHDILVRSRLLLLD------------TVTMQVTARSSEELPVDIVL 318 (322)
T ss_dssp EEEE--------EETTSCEEEEEEEEEESS------------SEEEEEEEEESSHHHHHHHH
T ss_pred EEEE--------EEeCCcEEEEEEEEeeCC------------ceEEEEEEecCCHHHHHHHH
Confidence 6433 3343424433 2233211 36789999999998876654
No 5
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=59.30 E-value=1.7e+02 Score=30.35 Aligned_cols=234 Identities=15% Similarity=0.176 Sum_probs=132.6
Q ss_pred CCCccccccCCceecccCCCCccEEEee-eeccCCCCeEEEEEEEec-CCcccccceeeEEecceeeecccCchHHHHHh
Q 001962 582 GIEATSLKASPTAYTLTGSSDPCYVEAY-HLADSSDGKITLHLKVLN-LTELELNRVDIRVGLSGALYFMNGSPQAVRQL 659 (990)
Q Consensus 582 gi~~t~~k~pp~avtLSGSSDPCyVEAy-HladP~~~RlTLHLKv~N-lte~eL~rvdvrVGL~GAL~fmDGs~QaVrqL 659 (990)
+.|. ++|+.|.++.||-+--=--|..- |.. ..-|-|.+.|-| ++++-|..|.|.+.....+ .-...-.+
T Consensus 26 ~lG~-l~kSS~~pv~LTE~EtEYvV~~vKHiF---~~hiVlQF~i~NTL~dq~LenVsV~~~~~d~~-----~~~~~ipi 96 (275)
T 1r4x_A 26 GLGP-LFKSSPEPVALTESETEYVIRCTKHTF---TNHMVFQFDCTNTLNDQTLENVTVQMEPTEAY-----EVLXYVPA 96 (275)
T ss_dssp TSCS-CCEECSSCEECSCTTSSEEEEEEEEEC---SSEEEEEEEEEECCTTEEEEEEEEEEEESSSC-----EEEEEECE
T ss_pred HcCc-ccccCCCcccccCCCCceEEEEEEEec---CCcEEEEEEeEEccCcEEEeeEEEEEEcCCCc-----eEEEeeec
Confidence 3344 78888788999988655555544 443 357889999987 6777888677666554432 11223346
Q ss_pred cccccCCceeeeeEeeeec--ccccc-eeeeeeeccccC-CCCCCCCC-CCccccchhHHhhhcccCCCCCCceEEeecc
Q 001962 660 RNLVSQDPVICSVTVGVSH--FERCA-FWVQVLYYPFHG-SGAIGDYE-GDYAEEDPQIMRQKRSARPELGEPVILRCQP 734 (990)
Q Consensus 660 ~~L~sqdpv~~svtvgVS~--ferc~-l~vQvLyyPf~G-s~G~g~~E-~D~~~E~~~~~rqr~~~rpeygepViLRCqp 734 (990)
..|..+.|-.|-|-+.... -.... -.-.+|-|.-.- --.+|.-| +-|.||=+ =|++-|...-
T Consensus 97 ~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke~Dp~tGe~~deGyeDEY~-------------lEdlel~~~D 163 (275)
T 1r4x_A 97 RSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYV-------------LEDLEVTVAD 163 (275)
T ss_dssp EEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEEBCTTTCCBCSCCEEEEEE-------------CCCEEECGGG
T ss_pred cccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEEeccCCCCCcCCCCccceEE-------------ccceeechhh
Confidence 7788888888887776542 11111 112244443321 01122221 12233322 2356666666
Q ss_pred cccccccccccCcCChhhhhhhcCCCcceEEEEEEEeeec-Ccchhhhh---hhcCCCccccccccccCCCcceeeceee
Q 001962 735 YKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEG-SGFKATAA---QQYGTSPFFSGLKSLSSKPFHIVCSHII 810 (990)
Q Consensus 735 YkIPLtELLlP~klSpveFfRLWpsLPAive~tgay~yEG-~G~kaa~a---a~~g~SP~lSGLkslSskPFH~vcshiL 810 (990)
|-+|+ .-.+|-..|.+++.-.|.+.+|..-+ ..+..|+. ..-|+.|.- |-+. +| ...-+|.|
T Consensus 164 ~i~p~---------~~~nF~~~We~l~~~~E~~~tf~L~~~~sl~~AV~~l~~~Lgm~p~e-~sd~---v~-~~~~~HtL 229 (275)
T 1r4x_A 164 HIQKV---------MKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCE-RSDK---VP-DNKNTHTL 229 (275)
T ss_dssp GEEEC---------CCSCHHHHHHHHCSTTCEEEEEEETTCCCHHHHHHHHHHHHTCEECT-TTTS---CC-SSCSEEEE
T ss_pred EEeec---------ccCchHHHHHhcCCccceEEEEEccCcCcHHHHHHHHHHhcCCcccc-CCcc---CC-CCCcceEE
Confidence 66662 22489999999977788888888743 44555554 344554432 2111 22 33367877
Q ss_pred eeccchhhhhhhhccccceeeE-EEeeeccccccccCCCcceeeEEEEEEEcCCccchhhcc
Q 001962 811 QAVAGFQLCYAAKTWYGGFVGM-MIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEIG 871 (990)
Q Consensus 811 RtvagFQ~CyAAkTW~GDfVgM-miFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI~ 871 (990)
.=.| +-|-|.-|+. +-++.+. ...+|..+|+.++.+.+-|.
T Consensus 230 ~LsG--------~~~gg~~Vlvr~rl~~~~------------gv~~kl~vRs~~~~v~~~v~ 271 (275)
T 1r4x_A 230 LLAG--------VFRGGHDILVRSRLLLLD------------TVTMQVTARSLEELPVDIIL 271 (275)
T ss_dssp EEEE--------EETTTEEEEEEEEEEESS------------SEEEEEEEEESSHHHHHHHH
T ss_pred EEEE--------EEeCCcEEEEEEEEecCC------------ceEEEEEEEcCCHHHHHHHH
Confidence 6433 3343324433 2233211 36789999999998876654
No 6
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=57.93 E-value=11 Score=34.27 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=49.2
Q ss_pred hhhhHHHHHhhccccccchhHHHHHHHHHhhhccccchhhHHHHHHHHHHHhhcccc-----cchhHHHHHHHhhhh
Q 001962 164 ASQSIIAILTLWDRQEFSSARESIVRAVVTNLHLLDLHLQVSLFRRLLLMVRNLRAE-----SDRMHALACICRTAL 235 (990)
Q Consensus 164 as~~i~a~ltlwdrqef~~~resivravv~nl~lldlh~qvslfkrlllmvrnlrae-----~drmhalacicrtal 235 (990)
+|.-+.-++.|=+ +.|-+.++ +..+++-+.+.|...||.+|+-|+.|+|++..+ ..||+-|.| |.-||
T Consensus 5 ~~~LM~dviaL~e-~rwi~~~~--I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a-~Q~Al 77 (92)
T 1xl3_C 5 LSEFMGDIVALVD-XRWAGIHD--IEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQM-CQNAI 77 (92)
T ss_dssp HHHHHHHHHHHHH-STTCCHHH--HHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHH-hcccCHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHH-HHHHH
Confidence 3444444444433 33444332 678899999999999999999999999999875 589999987 44443
No 7
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=41.31 E-value=51 Score=32.83 Aligned_cols=113 Identities=18% Similarity=0.338 Sum_probs=61.6
Q ss_pred cccccc--ccccccCcCChhhhhhhcCCCcce-EEEEEEEeeecC-cchhhhhhhcCC-CccccccccccCCCcceeece
Q 001962 734 PYKIPL--TELLLPHKISPVEFFRLWPSLPAI-VEYTGTYIYEGS-GFKATAAQQYGT-SPFFSGLKSLSSKPFHIVCSH 808 (990)
Q Consensus 734 pYkIPL--tELLlP~klSpveFfRLWpsLPAi-ve~tgay~yEG~-G~kaa~aa~~g~-SP~lSGLkslSskPFH~vcsh 808 (990)
..|+|+ +--+-|..++..+||.-|..+-.. -|......-.+. ..........|- --.+.| ....|-..||+=
T Consensus 124 ~LkLPi~l~KF~~p~~~~~~~Ff~rW~~l~~~~~E~q~~f~~~~~~~~~~~~~~l~gf~~~vl~~---vDpn~~niv~ag 200 (247)
T 1kyf_A 124 SVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEE---VDPNPANFVGAG 200 (247)
T ss_dssp EEECCCCGGGGEEECCCCHHHHHHHHTTCCSGGGEEEEEEECSSCCCHHHHHHHHHHHTSEEECS---SSSSTTSEEEEE
T ss_pred EEecCcEEEEeecCCcCCHHHHHHHHHhccCCCceeEEEeccCCCcCHHHHHHHHhcCCeEEeeC---CCCCcCcEEEEE
Confidence 455564 445559999999999999998642 133222221110 011111111111 112223 234577788888
Q ss_pred eeeeccchhhhhhhhccccceeeEEEeeeccccccccCCCcceeeEEEEEEEcCCccchhhccc
Q 001962 809 IIQAVAGFQLCYAAKTWYGGFVGMMIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGS 872 (990)
Q Consensus 809 iLRtvagFQ~CyAAkTW~GDfVgMmiFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI~s 872 (990)
++.|-++-- .+++-+ |.+.+ ..+|++.+|++++.+...|..
T Consensus 201 i~~t~~~~~-----------gcLlRl----E~n~~--------~~~~rltvRss~~~vs~~l~~ 241 (247)
T 1kyf_A 201 IIHTKTTQI-----------GCLLRL----EPNLQ--------AQMYRLTLRTSKDTVSQRLCE 241 (247)
T ss_dssp EEECSSCEE-----------EEEEEE----EEETT--------TTEEEEEEEESSHHHHHHHHH
T ss_pred EEEcCCCcE-----------EEEEEE----EEcCc--------CCEEEEEEEECChHHHHHHHH
Confidence 887776511 122333 33211 337899999999998877653
No 8
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.61 E-value=11 Score=39.48 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=36.4
Q ss_pred ceEEeecccccccccccccCcCChhhhhhhcCCCcce-----EEEEEEEe--eecCcchhhhh---hhcCCCcccccc
Q 001962 727 PVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAI-----VEYTGTYI--YEGSGFKATAA---QQYGTSPFFSGL 794 (990)
Q Consensus 727 pViLRCqpYkIPLtELLlP~klSpveFfRLWpsLPAi-----ve~tgay~--yEG~G~kaa~a---a~~g~SP~lSGL 794 (990)
-|++-.||=.+ -|++| .-||| -=.+|.- ++..-.|. =+|.-.....+ +..|++|+--||
T Consensus 121 dV~Ip~G~t~~------~p~~~--~~~fq-~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l 189 (339)
T 3j21_k 121 DVVIPAGPTSL------APGPI--VGQMQ-AMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGL 189 (339)
T ss_dssp CEEECCEECSC------CSSHH--HHHHH-HHTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHHTCCCSCCSC
T ss_pred eEEecCCCCCC------CCCcc--HHHHH-HcCCCeEeccCeEEEccceEEEecCCCcCHHHHHHHHHcCCCcEEeee
Confidence 56666666432 36654 46887 4467765 34444344 45655555444 788999998888
No 9
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=23.61 E-value=1e+02 Score=28.98 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=43.6
Q ss_pred ccCCCCccccccchhhhhhcccCcccccCCCceeehhhHHHHHH---HHhhhccCCCceeeccCCCChhHHhHHHH--HH
Q 001962 316 YGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKLLV---RLCHIYDTRGGVKRVKDGASQDQILNETR--LQ 390 (990)
Q Consensus 316 ygt~~ga~~wt~~alevvevcrpcvkwdc~grtya~dcylkllv---rlchiydt~ggvk~~kdgas~dqil~etr--lq 390 (990)
|.++.+.+.|+.+|+.-.. -|-..||--|. .||-|.--+|||||+.+. |-.|+| |.
T Consensus 18 ~~~~~~~lRfq~~Al~ALQ--------------eAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-----iy~e~r~vl~ 78 (121)
T 2ly8_A 18 FTTKDQDLRWQSMAIMALQ--------------EASEAYLVGLLEHTNLLALHLVPRGSKRISGL-----IYEEVRAVLK 78 (121)
T ss_dssp HTTCCSSCCBCHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-----HHHHHHHHHH
T ss_pred hcCCCCCccccHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHcCCccCccchhHH-----HHHHHHHHHH
Confidence 4444566889999987543 24567765554 478888899999999855 444443 34
Q ss_pred HHHHHHHHhhh
Q 001962 391 NMQRQLVKDLH 401 (990)
Q Consensus 391 ~lq~~lvkdl~ 401 (990)
..-.++++|.-
T Consensus 79 ~~l~~i~rdav 89 (121)
T 2ly8_A 79 SFLESVIRDSV 89 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455666643
No 10
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli}
Probab=23.46 E-value=73 Score=31.52 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.9
Q ss_pred ceecccCCC-CccEEEeeeeccCCCCeEEEEEEEecCCcccc
Q 001962 593 TAYTLTGSS-DPCYVEAYHLADSSDGKITLHLKVLNLTELEL 633 (990)
Q Consensus 593 ~avtLSGSS-DPCyVEAyHladP~~~RlTLHLKv~Nlte~eL 633 (990)
..+|||... +-..|+=-+..+|++|.|++.++|.|++...+
T Consensus 92 ~~Vtlt~~~~~G~~~~ktytf~~~~Y~i~v~~~v~N~s~~~~ 133 (280)
T 3bs6_A 92 LQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPL 133 (280)
T ss_dssp EEEEEEEECTTCCEEEEEEEEETTCCEEEEEEEEECCSSSCE
T ss_pred eEEEEEEECCCCeEEEEEEEEcCCceEEEEEEEEEcCCCCce
Confidence 578898875 78999999999999999999999999986643
No 11
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A
Probab=23.25 E-value=31 Score=33.85 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCCCcc-cccccccC---CCccccceeEEEeecc
Q 001962 519 HPENKW-ACVNEARG---DYPFSHHKLTVQFYEA 548 (990)
Q Consensus 519 hp~~kw-~g~~~a~g---dypfshhkltvq~~e~ 548 (990)
-|.+.| +|+|.+|| |.+=+|.=+++++|+.
T Consensus 188 LP~~~~y~G~SA~TG~l~~~~d~hdil~~~~~~~ 221 (222)
T 2a6z_A 188 FPSGSYRIGVTAQNGAVNNNAESFEIFKMQFFNG 221 (222)
T ss_dssp CCSSEEEEEEEEECCSGGGCCCEEEEEEEEEEEC
T ss_pred cCCCCcEEEEEEcCCCCCCCCccEEEEEEEEEcC
Confidence 588875 99999999 9999999999999974
No 12
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13
Probab=20.83 E-value=32 Score=34.45 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCCCcc-cccccccC---CCccccceeEEEeecc
Q 001962 519 HPENKW-ACVNEARG---DYPFSHHKLTVQFYEA 548 (990)
Q Consensus 519 hp~~kw-~g~~~a~g---dypfshhkltvq~~e~ 548 (990)
-|++.| +|+|.+|| |.+=+|.=|++.||+.
T Consensus 195 LP~~~~~~GfSAaTG~~~~~~d~hdIls~~~~~~ 228 (256)
T 2a6y_A 195 FPSGSYRIGVTAQNGAVNNNAESFEIFKMQFFNG 228 (256)
T ss_dssp CCSEEEEEEEEEECCSGGGCCCEEEEEEEEEEES
T ss_pred eCCCCeEEEEEEeCCCCCCCcceEEEEEEEEEec
Confidence 688885 99999999 9999999999999983
Done!