Query 001962
Match_columns 990
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 06:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001962.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001962hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kyfa2 d.105.1.1 (A:825-938) 54.7 11 0.00082 32.0 6.3 100 744-872 3-108 (114)
2 d1xl3c1 a.243.1.1 (C:2-92) Tye 25.3 36 0.0026 28.8 4.6 47 188-235 25-76 (91)
3 d1x40a1 a.60.1.2 (A:8-85) Cent 19.9 63 0.0046 25.0 4.7 54 867-920 4-75 (78)
4 d2vglb_ a.118.1.10 (B:) Adapti 16.9 24 0.0017 35.0 1.8 77 394-490 427-505 (579)
5 d1ugna1 b.1.1.4 (A:2-97) Ligan 16.8 23 0.0017 28.2 1.4 11 724-734 17-27 (96)
6 d1a6qa1 a.159.1.1 (A:297-368) 15.3 1.2E+02 0.0085 24.5 5.4 48 378-427 1-51 (72)
7 d1ldtl_ g.68.1.1 (L:) Leech de 14.9 19 0.0014 26.9 0.3 30 344-384 16-45 (46)
8 d1olla1 b.1.1.4 (A:1-95) Ligan 13.7 32 0.0023 27.0 1.5 11 724-734 17-27 (95)
9 d2a6va1 b.29.1.13 (A:9-226) Em 13.7 38 0.0027 30.4 2.2 26 523-548 190-215 (218)
10 d1jeyb2 c.62.1.4 (B:6-241) Ku8 12.9 80 0.0058 26.5 4.0 41 826-866 45-85 (236)
No 1
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.67 E-value=11 Score=32.02 Aligned_cols=100 Identities=17% Similarity=0.367 Sum_probs=56.8
Q ss_pred ccCcCChhhhhhhcCCCcc-eEEEEEEEeeecCcc--hhhhh---hhcCCCccccccccccCCCcceeeceeeeeccchh
Q 001962 744 LPHKISPVEFFRLWPSLPA-IVEYTGTYIYEGSGF--KATAA---QQYGTSPFFSGLKSLSSKPFHIVCSHIIQAVAGFQ 817 (990)
Q Consensus 744 lP~klSpveFfRLWpsLPA-ive~tgay~yEG~G~--kaa~a---a~~g~SP~lSGLkslSskPFH~vcshiLRtvagFQ 817 (990)
-|..+++.+||.-|..+-. --|..-.+. .... ..++. ..-|.. .+-| ..+.|=..+++=+++|-+|=-
T Consensus 3 ~p~~l~~~dFf~rW~qig~~~~E~q~if~--~~~~~~~~~~~~~l~~~g~~-v~~~---~Dpnp~nlv~agi~~t~~~~~ 76 (114)
T d1kyfa2 3 QPTEMASQDFFQRWKQLSNPQQEVQNIFK--AKHPMDTEITKAKIIGFGSA-LLEE---VDPNPANFVGAGIIHTKTTQI 76 (114)
T ss_dssp EECCCCHHHHHHHHTTCCSGGGEEEEEEE--CSSCCCHHHHHHHHHHHTSE-EECS---SSSSTTSEEEEEEEECSSCEE
T ss_pred CCccCCHHHHHHHHHHhCCCcceeeeeec--CCCCCCHHHHHHHHhhCCeE-ecCC---CCCChhhEEEEEEEEcCCceE
Confidence 4899999999999999942 123333332 2111 11121 222332 2333 456787888888888755421
Q ss_pred hhhhhhccccceeeEEEeeeccccccccCCCcceeeEEEEEEEcCCccchhhccc
Q 001962 818 LCYAAKTWYGGFVGMMIFGASEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGS 872 (990)
Q Consensus 818 ~CyAAkTW~GDfVgMmiFGaSevs~nvDLGdet~tMvCkFvvRASsasi~~eI~s 872 (990)
.| | -.-|- |.+ .. +|++.+|++++.+...|.+
T Consensus 77 gc------------L---~Rle~--n~~-----~~-~~rlTvRst~~~vs~~l~~ 108 (114)
T d1kyfa2 77 GC------------L---LRLEP--NLQ-----AQ-MYRLTLRTSKDTVSQRLCE 108 (114)
T ss_dssp EE------------E---EEEEE--ETT-----TT-EEEEEEEESSHHHHHHHHH
T ss_pred eE------------E---EEEEE--CCC-----Cc-EEEEEEEeCCccHHHHHHH
Confidence 12 1 12232 222 12 5899999999998877654
No 2
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=25.35 E-value=36 Score=28.83 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=39.0
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHHHhhccc-----ccchhHHHHHHHhhhh
Q 001962 188 VRAVVTNLHLLDLHLQVSLFRRLLLMVRNLRA-----ESDRMHALACICRTAL 235 (990)
Q Consensus 188 vravv~nl~lldlh~qvslfkrlllmvrnlra-----e~drmhalacicrtal 235 (990)
+--+++.+.+.|...||.+|+-|..|||.+.. +..||.=|.| |.-||
T Consensus 25 I~~i~~~~~l~~~e~~I~F~~El~~l~R~iP~~~f~d~e~R~~lL~a-~Q~AL 76 (91)
T d1xl3c1 25 IEHLANAFSLPTPEIKVRFYQDLKRMFRLFPLGVFSDEEQRQNLLQM-CQNAI 76 (91)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHH-HHHHH
Confidence 34578889999999999999999999999976 4589988887 44443
No 3
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}
Probab=19.87 E-value=63 Score=25.00 Aligned_cols=54 Identities=9% Similarity=0.209 Sum_probs=35.1
Q ss_pred hhhcccchhhhhhhh--------------cc-Cccccccchhhhhh---hHHHHHHHHHHHHHhhhcCCCCC
Q 001962 867 TKEIGSDLQGWLDDL--------------TD-GGVEYMPEDEVKAS---AAERLRISMERIALLKAARPKKT 920 (990)
Q Consensus 867 ~~eI~sDlq~WLdDL--------------TD-~~vr~~~e~eV~~a---aaEklkrsme~~al~ka~~~~~~ 920 (990)
+.+...|+..||+.+ ++ ..+-.|.++.++.. ...--++.+..|..+|...+++|
T Consensus 4 ~se~~~dV~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~ghr~kil~~i~~Lr~~~~~~p 75 (78)
T d1x40a1 4 VSEVNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQDIP 75 (78)
T ss_dssp CSTTCCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCChhHHHHHHHCchHHHHHHHHHcCCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcCCC
Confidence 346677999999865 11 23445677666654 34555667777888888766554
No 4
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.93 E-value=24 Score=35.00 Aligned_cols=77 Identities=23% Similarity=0.447 Sum_probs=46.9
Q ss_pred HHHHHhhhhcccchhhHHHHHHHhhhcccCCCCCcccCCCCCchhhhhhccceeeecccCcccccchhhhHHHH-HHHhh
Q 001962 394 RQLVKDLHEVNTPRMLARLIWAIAEHIDLEGLDPLLADDPEDPLNIIISNIHKVLFNVDSSANTSNRLQDVQAV-LISAQ 472 (990)
Q Consensus 394 ~~lvkdl~ev~tpr~~ar~iwaiaeh~dlegldplladdpedplniii~~ihkvlfn~ds~a~~~nr~qd~qa~-l~~aq 472 (990)
..|.+.+.++..|++++.+||.|+|+-+.= +++.|=|..++++++. .+ .+||.. |-++-
T Consensus 427 ~~L~~~l~~~~~~~~~~~~iwilGEy~~~i-------~~~~~ll~~l~~~f~~-----e~--------~~vq~~iLta~~ 486 (579)
T d2vglb_ 427 ATLCENLDSLDEPDARAAMIWIVGEYAERI-------DNADELLESFLEGFHD-----ES--------TQVQLTLLTAIV 486 (579)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTC-------TTHHHHHHHHSTTCSS-----SC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhCccccc-------ccHHHHHHHHHHhhhh-----CC--------HHHHHHHHHHHH
Confidence 467888899999999999999999997531 2233334444444331 11 245544 44555
Q ss_pred hhcCCCCc-cchhhHHHHH
Q 001962 473 RLGSRNPR-AGQLLTKELE 490 (990)
Q Consensus 473 ~lgsr~~r-agqll~kele 490 (990)
.|--++|- ..+++.+-|.
T Consensus 487 Kl~~~~p~~~~~~~~~vl~ 505 (579)
T d2vglb_ 487 KLFLKKPSETQELVQQVLS 505 (579)
T ss_dssp HHHTTCCSTTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHh
Confidence 66556653 4456666664
No 5
>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.76 E-value=23 Score=28.21 Aligned_cols=11 Identities=64% Similarity=1.117 Sum_probs=9.7
Q ss_pred CCCceEEeecc
Q 001962 724 LGEPVILRCQP 734 (990)
Q Consensus 724 ygepViLRCqp 734 (990)
-|+.|+||||.
T Consensus 17 ~G~~VTL~C~~ 27 (96)
T d1ugna1 17 QGSPVTLRCQG 27 (96)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEEEEEeC
Confidence 58999999994
No 6
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.31 E-value=1.2e+02 Score=24.52 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=36.7
Q ss_pred CChhHHhHHHHHHHHHHHHHHhhhhccc---chhhHHHHHHHhhhcccCCCCC
Q 001962 378 ASQDQILNETRLQNMQRQLVKDLHEVNT---PRMLARLIWAIAEHIDLEGLDP 427 (990)
Q Consensus 378 as~dqil~etrlq~lq~~lvkdl~ev~t---pr~~ar~iwaiaeh~dlegldp 427 (990)
.|+|.|-.|..|...-.+.|+++-+=+. |- ..-+++.|+. .|+.||-|
T Consensus 1 Vs~EAv~kE~eLd~~Le~~v~eii~~~~~~~~d-l~~Vm~~L~~-e~Ip~LPP 51 (72)
T d1a6qa1 1 VSPEAVKKEAELDKYLECRVEEIIKKQGEGVPD-LVHVMRTLAS-ENIPSLPP 51 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHH-TTCSSCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcccCCch-HHHHHHHHHh-cCCCCCCC
Confidence 3899999999999999999988866432 34 4578899986 48888876
No 7
>d1ldtl_ g.68.1.1 (L:) Leech derived tryptase inhibitor (LDTI-C) {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=14.87 E-value=19 Score=26.94 Aligned_cols=30 Identities=43% Similarity=0.832 Sum_probs=23.1
Q ss_pred CCCceeehhhHHHHHHHHhhhccCCCceeeccCCCChhHHh
Q 001962 344 CDGRTYAIDCYLKLLVRLCHIYDTRGGVKRVKDGASQDQIL 384 (990)
Q Consensus 344 c~grtya~dcylkllvrlchiydt~ggvk~~kdgas~dqil 384 (990)
+||.||.=.|+++ |+ ||+...+|.-+--|+
T Consensus 16 ~DG~TY~N~C~A~-----C~------gv~~~~~G~C~~g~~ 45 (46)
T d1ldtl_ 16 SDGRTYANSCIAR-----CN------GVSIKSEGSCPTGIL 45 (46)
T ss_dssp STTCEESSHHHHH-----HH------CCCCCEESCCSSSCC
T ss_pred CCCCEECCHHHhC-----cC------CccceEcccCCCCcc
Confidence 8999999999976 54 788888887655444
No 8
>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.70 E-value=32 Score=27.03 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.6
Q ss_pred CCCceEEeecc
Q 001962 724 LGEPVILRCQP 734 (990)
Q Consensus 724 ygepViLRCqp 734 (990)
-|+.|+|||+.
T Consensus 17 ~G~~VTL~C~~ 27 (95)
T d1olla1 17 KEKQVTICCQG 27 (95)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEEEEEec
Confidence 48999999984
No 9
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.69 E-value=38 Score=30.37 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.4
Q ss_pred cccccccccCCCccccceeEEEeecc
Q 001962 523 KWACVNEARGDYPFSHHKLTVQFYEA 548 (990)
Q Consensus 523 kw~g~~~a~gdypfshhkltvq~~e~ 548 (990)
-|.|++.+||+++=+|==++|++|+.
T Consensus 190 ~yfG~SA~Tg~~~d~~dIls~~~~~~ 215 (218)
T d2a6va1 190 FRIGTSAINDASKESFEILKMKLYDG 215 (218)
T ss_dssp BEEEEEEECCTTCCEEEEEEEEEESS
T ss_pred EEEEEEECCCCCcCcEEEEEEEEEec
Confidence 47999999999998888899999974
No 10
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.90 E-value=80 Score=26.48 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=23.7
Q ss_pred ccceeeEEEeeeccccccccCCCcceeeEEEEEEEcCCccc
Q 001962 826 YGGFVGMMIFGASEVSRNVDLGDETTTMMCKFVVRASDSSI 866 (990)
Q Consensus 826 ~GDfVgMmiFGaSevs~nvDLGdet~tMvCkFvvRASsasi 866 (990)
-+|.||++.||.....-..+-++...++..-......+...
T Consensus 45 ~~d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (236)
T d1jeyb2 45 NKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDL 85 (236)
T ss_dssp CCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHH
T ss_pred CCCeEEEEEEcCCCcccccccccccceEEEEeccccchhhH
Confidence 48999999999887654444444444433333444444333
Done!