BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001963
(990 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 190/298 (63%), Gaps = 5/298 (1%)
Query: 25 YNTSAGIVPGKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVAD 84
Y T + P +NVHLVPH+HDDVGWLKTVDQY+ G N+IQ A VQ +LDS+I +L+A+
Sbjct: 3 YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 62
Query: 85 KNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQ 144
R+FIYVE AFF RWWR Q+ Q +V++LV G+LE NGG M+DEA HY +IDQ
Sbjct: 63 PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 122
Query: 145 TTLGHRYIKEQF--NVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRI 202
TLG R+++E F + PR+ W IDPFGHS QA L A++GFD FF R+DYQD+ R
Sbjct: 123 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLF-AQMGFDGFFFGRLDYQDKKVRK 181
Query: 203 NEKTLEVVWRASKSLG-SSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNV 261
+E VWRAS SL +A + T + P Y PP + + P+V+D + +YN
Sbjct: 182 KTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSP-EYNA 240
Query: 262 PERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNA 319
E V F+ A Q + RT H + TMG+DF+Y+ A+TWF+ +DK I VN R N
Sbjct: 241 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 227/840 (27%), Positives = 370/840 (44%), Gaps = 111/840 (13%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 50 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEXKFIWAEI 101
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + K +V +GQLE + GG DEA H+ +++ Q T G ++K+
Sbjct: 102 SYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLKQ 161
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 162 FXNVTPTASWAIDPFGHSPTXPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T P +Y+ P F F+ G + P + D N
Sbjct: 221 WDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGLSCPWKVPPRTISDQN 280
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 281 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 340
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 341 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRXDR 400
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R
Sbjct: 401 VLXHYVRAAEXLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRX 460
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 461 QEALKACQXVXQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 517
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV +N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 518 DILPSKHVVXHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 569
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP G TY+++ + H T Y S +R+N
Sbjct: 570 HDTLTKTIHPQGSTTKYRIIFKARVPPXGLATYVLTISDSKPEH----TSYASNLLLRKN 625
Query: 595 DT-IEVGPGNLKLLYSGKRAKLMRYINSKT---SVNKLLEQSYIYYRGDDGSKDLQLSFT 650
T + +G + + R +R N T S LL+ + S + + F
Sbjct: 626 PTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQL----TQDSPHVPVHFK 681
Query: 651 ILRGPLLDEVHQRINPWIY-------------QVTRVYKGKDHAEIEFTVGPI---PIDD 694
L+ + R +++ V V KGK + + + + I
Sbjct: 682 FLKYGVRSH-GDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQTIXR 740
Query: 695 GIGKEV--------------VTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQ 740
G E+ V ++ +++ S FYTD +G FI+R R +
Sbjct: 741 GGAPEIRNLVDIGSLDNTEIVXRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------L 792
Query: 741 PIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
P+ NYYP+ G +++D ++ L++L + +GGSS+A G+LE+ RRL +DD RG+ + +
Sbjct: 793 PLQANYYPIPSGXFIEDANTRLTLLTGQPLGGSSLASGELEIXQDRRLASDDERGLGQGV 852
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 173/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 131
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 310
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 311 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 370
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 371 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 430
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 431 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 490
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 491 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 547
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 548 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 599
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 600 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 655
Query: 595 DT 596
T
Sbjct: 656 PT 657
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 789 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDA 840
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 841 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 173/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 50 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 101
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 102 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 161
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 162 FMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 221 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 280
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 281 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 340
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 341 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 400
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 401 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 460
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 461 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 517
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 518 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 569
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 570 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 625
Query: 595 DT 596
T
Sbjct: 626 PT 627
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 759 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKL--------PLQANYYPIPSGMFIEDA 810
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 811 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 852
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 173/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 131
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 310
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 311 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 370
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 371 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 430
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 431 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 490
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 491 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 547
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 548 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 599
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 600 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 655
Query: 595 DT 596
T
Sbjct: 656 PT 657
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 789 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDA 840
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 841 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 173/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 131
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 310
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 311 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 370
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 371 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 430
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 431 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 490
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 491 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 547
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 548 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 599
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 600 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 655
Query: 595 DT 596
T
Sbjct: 656 PT 657
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 789 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDA 840
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 841 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 172/602 (28%), Positives = 277/602 (46%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 131
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W IDPFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 192 FMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 310
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G +F+++ W Q ++ ++N
Sbjct: 311 VAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINSQAHF 370
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 371 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 430
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 431 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 490
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 491 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 547
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 548 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 599
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 600 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 655
Query: 595 DT 596
T
Sbjct: 656 PT 657
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 789 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDA 840
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 841 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 882
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 172/602 (28%), Positives = 276/602 (45%), Gaps = 64/602 (10%)
Query: 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQ 94
K+ V +VPHSH+D GW++T ++YY I ++++ D + KFI+ E
Sbjct: 80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHD--------NPEMKFIWAEI 131
Query: 95 AFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154
++F R++ D E + +K +V +GQLE + GG M DEA H+ +++ Q T G ++K+
Sbjct: 132 SYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQ 191
Query: 155 QFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRAS 214
NVTP W I PFGHS Y+L + GF + R Y + + ++ LE +WR
Sbjct: 192 FMNVTPTASWAIAPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 215 KSLGSSAQIMTGISP-KNYEPPSD---------NFYFE----VGDTSPIVQDDMNLFDYN 260
+ T + P +Y+ P F F+ G + P + D N
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQN 310
Query: 261 VPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQM---DKFIHYVNQDGRV 317
V R + V +A + RTN ++ +G DF+++ W Q ++ ++N
Sbjct: 311 VAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHF 370
Query: 318 N--ALYSTPSMYIDAKYAANES----WPLKTDDFFPYADRENAYWTGYFTSRPALKGYVR 371
N A + T Y DA + A + +P + DFF YADR + YW+GY+TSRP K R
Sbjct: 371 NVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDR 430
Query: 372 TMSAYYLAARQLEFFK---GRNEVGXXXXXXXXXXXXVQHHDAVSGTEKQHVADDYAKRL 428
+ Y AA L + G + QHHD ++GT K HV DY +R+
Sbjct: 431 VLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRM 490
Query: 429 SIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSS-----GK 483
+ V+ S+ L +K +P +F L+ S P S V+ S G+
Sbjct: 491 QEALKACQMVMQQSVYRL--LTKPSIYSPDFSFSYF-TLDDSRWPGSGVEDSRTTIILGE 547
Query: 484 SLV----VVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYS 539
++ VV++N L RE ++ V + V+V D +E+Q+ P+ S+
Sbjct: 548 DILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVW--------SWH 599
Query: 540 TAYLGKSTN---VTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQ--IRQN 594
L K+ + T Y + F A VPP+G TY+++ + H T Y S +R+N
Sbjct: 600 HDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEH----TSYASNLLLRKN 655
Query: 595 DT 596
T
Sbjct: 656 PT 657
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 699 EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDN 758
E+V ++ +++ S FYTD +G FI+R R + P+ NYYP+ G++++D
Sbjct: 789 EIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQANYYPIPSGMFIEDA 840
Query: 759 SSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEAL 800
++ L++L + +GGSS+A G+LE+M RRL +DD RG+ + +
Sbjct: 841 NTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGV 882
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 127/194 (65%), Gaps = 7/194 (3%)
Query: 651 ILRGPLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMIS 710
+++ L+ EVHQ + W QV R+Y + H E+E+TVGPIP+ DG GKEV+++ + + +
Sbjct: 78 LVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALAT 137
Query: 711 NKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSV 770
FYTDS+GR+ +ER R+YR W L +P+AGNYYPVN IY+ D + +L++L DRS
Sbjct: 138 RGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQ 197
Query: 771 GGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPV-GEA 829
GGSS+ DG LELM+HRRL+ DD RGV E LN+ + GL + G++ + +D A
Sbjct: 198 GGSSLRDGSLELMVHRRLLKDDARGVGEPLNK------EGSGLWVRGRHLVLLDKKETAA 251
Query: 830 AKWRRSFGQEIYSP 843
A+ R E+ +P
Sbjct: 252 ARHRLQAEMEVLAP 265
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 32/167 (19%)
Query: 406 VQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCP 465
+QHHDAVSGT +QHVA+DYA++LS G+ E +++ +LA L+ + +F C
Sbjct: 13 LQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKE--------DFAFCR 64
Query: 466 LLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLL 525
LNIS CP ++ + + V+VYNPLG K + ++R+PV VKD GK++ S
Sbjct: 65 KLNISICPLTQ----TAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPS--- 117
Query: 526 PLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIIS 572
D +++ +S S L FSA VP +GF+ Y +S
Sbjct: 118 ----DVVTIPSSDSQELL-------------FSALVPAVGFSIYSVS 147
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 45/73 (61%)
Query: 316 RVNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSA 375
RVN LYSTP+ Y+ AN SW +K DDFFPYAD +WTGYF+SRPALK Y R
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 376 YYLAARQLEFFKG 388
+ QLE G
Sbjct: 62 FLQVCNQLEALAG 74
>pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 126
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 873 LPDNVALITLQELDSGKILLRLAHLYEIEEDT--DLSVMSSVELXXXXXXXXXXXVTEMN 930
LP +V L+TL +LLRL H + + ED+ +LS +++L + E
Sbjct: 12 LPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRETT 71
Query: 931 LSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFV 983
L+ANQ A RL W + P SP P + L PMEIRTF+
Sbjct: 72 LAANQLLAY--ASRLQWTTDTGPTPHP-----SPSRPVSATITLQPMEIRTFL 117
>pdb|4HWG|A Chain A, Structure Of Udp-N-Acetylglucosamine 2-Epimerase From
Rickettsia Bellii
Length = 385
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 218 GSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQAN 277
G + ++ I+ K + P F+ E G+ FD VPE +N + I+ N
Sbjct: 102 GDTNSCLSAIAAKRRKIPI--FHMEAGNRC---------FDQRVPEEINRKIIDHISDVN 150
Query: 278 ITRTNH-----IMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSMY 327
IT T H I + + ++ +D+F+ + + ++ L TP Y
Sbjct: 151 ITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQY 205
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 248 PIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKF 307
P ++D N+ YN+P R D A+ ++ T T ++W + D ++ A T+
Sbjct: 48 PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQELVWLIENDLNFEAAKTYMS----- 100
Query: 308 IHYVNQDG 315
+ Y+ DG
Sbjct: 101 LRYIYLDG 108
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 248 PIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKF 307
P ++D N+ YN+P R D A+ ++ T T ++W + D ++ A T+
Sbjct: 48 PYLKDAANI--YNMPLRPTDVFVASYQRSGTTMTQELVWLIENDLNFEAAKTYMS----- 100
Query: 308 IHYVNQDG 315
+ Y+ DG
Sbjct: 101 LRYIYLDG 108
>pdb|1EO8|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 210
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 469 ISYCPPSEVDLSSGKSLVVVVYN-------PLGWKREDIIRIPVINENVTVKDSKGKVIE 521
+S PPS++ L+SG + VV N + WK + R + + T +DSK
Sbjct: 113 VSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS 172
Query: 522 -SQLLPLLKDSMSLRNSYSTAYLGKSTNVTP 551
S L L KD NSY+ K T+ +P
Sbjct: 173 MSSTLTLTKDEYERHNSYTCEATHK-TSTSP 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,507,277
Number of Sequences: 62578
Number of extensions: 1193389
Number of successful extensions: 2868
Number of sequences better than 100.0: 369
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 355
Number of HSP's that attempted gapping in prelim test: 2785
Number of HSP's gapped (non-prelim): 382
length of query: 990
length of database: 14,973,337
effective HSP length: 108
effective length of query: 882
effective length of database: 8,214,913
effective search space: 7245553266
effective search space used: 7245553266
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)