Query 001963
Match_columns 990
No_of_seqs 269 out of 1264
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 13:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 3E-231 6E-236 1925.8 78.1 958 3-989 5-996 (996)
2 PLN02701 alpha-mannosidase 100.0 1E-179 3E-184 1644.5 90.8 908 19-987 24-1050(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 2E-159 4E-164 1345.9 55.3 888 20-986 147-1128(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 1E-103 2E-108 981.7 77.8 808 35-985 3-875 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 3E-76 6.5E-81 643.0 44.0 745 33-986 278-1078(1078)
6 PF01074 Glyco_hydro_38: Glyco 100.0 3E-59 6.5E-64 512.3 25.6 270 37-349 1-275 (275)
7 COG0383 AMS1 Alpha-mannosidase 100.0 1.7E-49 3.8E-54 486.3 30.9 705 36-985 198-942 (943)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 1.2E-43 2.7E-48 418.9 41.1 410 485-983 1-457 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.8 1.6E-21 3.4E-26 170.5 2.4 75 354-428 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 4.5E-20 9.8E-25 160.8 5.0 74 355-428 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.8 2.3E-20 4.9E-25 230.3 -1.7 358 34-430 2-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.3 2.4E-06 5.3E-11 97.5 10.2 121 70-192 28-195 (360)
13 COG1543 Uncharacterized conser 96.2 0.011 2.4E-07 66.6 7.7 121 69-191 76-207 (504)
14 PF01522 Polysacc_deac_1: Poly 95.0 0.22 4.9E-06 47.0 10.8 104 71-187 17-122 (123)
15 COG1449 Alpha-amylase/alpha-ma 93.1 6.6 0.00014 47.9 20.2 97 89-187 162-262 (615)
16 TIGR02764 spore_ybaN_pdaB poly 92.2 1.3 2.9E-05 45.5 11.3 101 75-188 22-124 (191)
17 TIGR02884 spore_pdaA delta-lac 91.9 1.2 2.7E-05 47.1 10.9 102 76-189 54-157 (224)
18 TIGR03212 uraD_N-term-dom puta 91.2 19 0.00041 39.9 19.5 109 71-193 76-186 (297)
19 TIGR03006 pepcterm_polyde poly 90.5 2.3 4.9E-05 46.3 11.3 111 68-190 24-138 (265)
20 TIGR02873 spore_ylxY probable 88.5 4.7 0.0001 44.0 11.9 101 74-187 100-202 (268)
21 PRK14582 pgaB outer membrane N 84.2 28 0.00061 42.9 16.4 151 110-315 168-347 (671)
22 PRK14581 hmsF outer membrane N 80.9 9.1 0.0002 46.9 10.6 81 109-192 167-275 (672)
23 PRK15394 4-deoxy-4-formamido-L 64.4 2.3E+02 0.0051 31.3 16.5 80 110-193 92-175 (296)
24 PF08672 APC2: Anaphase promot 62.5 9.1 0.0002 31.3 3.3 23 106-128 36-58 (60)
25 PF07481 DUF1521: Domain of Un 60.5 98 0.0021 30.5 10.2 89 595-684 8-103 (171)
26 TIGR03826 YvyF flagellar opero 38.3 26 0.00056 33.9 2.7 50 69-125 27-76 (137)
27 PF06044 DRP: Dam-replacing fa 28.8 1E+02 0.0023 32.5 5.3 59 70-128 185-250 (254)
28 PRK10148 hypothetical protein; 28.5 22 0.00047 35.0 0.4 17 160-176 123-139 (147)
29 PHA03393 odv-e66 occlusion-der 26.3 1.1E+02 0.0024 37.5 5.7 110 49-179 54-174 (682)
30 COG0726 CDA1 Predicted xylanas 25.5 5.6E+02 0.012 26.9 11.0 113 50-186 67-181 (267)
31 PF12395 DUF3658: Protein of u 22.8 1.3E+02 0.0029 27.9 4.5 69 37-132 40-108 (111)
32 TIGR03593 yidC_nterm membrane 20.8 4.5E+02 0.0097 30.0 9.4 28 595-622 74-101 (366)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-231 Score=1925.79 Aligned_cols=958 Identities=50% Similarity=0.833 Sum_probs=864.3
Q ss_pred CcchhhhHHHhhhhcccceeeeecCCCCCCCCeeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHH
Q 001963 3 NQVCLVVVLFLCLLCVESKYMMYNTSAGIVPGKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALV 82 (990)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~ 82 (990)
+.+|++|+|++++.... ..++|++|+...+++++||||||||+|+|||||+||||+|+++.||+++|++|||+||++|.
T Consensus 5 ~~~~~l~~l~lli~~~~-~~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl 83 (996)
T KOG1959|consen 5 KFLLFLCLLLLLISLVE-SRAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELL 83 (996)
T ss_pred cchHHHHHHHHHHHHHh-HhhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHh
Confidence 34455555544444443 34449999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcC--CCC
Q 001963 83 ADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFN--VTP 160 (990)
Q Consensus 83 ~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG--~~p 160 (990)
+||+|||+++|++||.+||.+|++++|+.||+||++|||||+||||||+|||++||.|+|+||+.||+||.++|| .+|
T Consensus 84 ~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrP 163 (996)
T KOG1959|consen 84 KDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRP 163 (996)
T ss_pred cCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cceeecCCCCCchhhHHHHHhhcCCcEEEEeecCHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCc
Q 001963 161 RIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFY 240 (990)
Q Consensus 161 ~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~ 240 (990)
++||||||||||+.+|+|| |+|||++.+|+||||++|+.|..++.|||+|+|++++|+.++|||++|++||++| +|||
T Consensus 164 rvgWqIDPFGHSreqAslf-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P-~gfc 241 (996)
T KOG1959|consen 164 RVGWQIDPFGHSREQASLF-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPP-PGFC 241 (996)
T ss_pred ceeeeeCCCCcchHHHHHH-HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCC-CCce
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCCCccCCccccCCChHHHHHHHHHHHHHHhhhcCCCeEEEeecCCCCCcchHHHHHHHHHHHHHHhcC---C-C
Q 001963 241 FEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQD---G-R 316 (990)
Q Consensus 241 f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~y~~a~~~~~~~~~li~~~N~~---~-~ 316 (990)
||.+|.+.|++|++.+.+|||++|++.|++.++.++..|+|||||+|||+||+|.+|..||+||||||+|+|+. + .
T Consensus 242 ~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~ 321 (996)
T KOG1959|consen 242 FDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSK 321 (996)
T ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999943 4 8
Q ss_pred eeEEeCChhhHHHHHHhcCCCCCcccCCCccccccCCCceeeeeecccchhhHHHHhhHHHHHHHHHHhhccccc--CCC
Q 001963 317 VNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGRNE--VGL 394 (990)
Q Consensus 317 ~~i~~sT~~~Yf~a~~~~~~~~p~~~gDf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~ 394 (990)
+++.||||+||++++++.+..||+++.|||||++++|.||||||||||.+|++.|++++.|++|+||+.++++.. ..+
T Consensus 322 vnv~YSTpscYl~alh~~~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~ 401 (996)
T KOG1959|consen 322 VNVFYSTPSCYLNALHAANQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGP 401 (996)
T ss_pred EEEEEcChHHHHHHHHHhcCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998654 567
Q ss_pred chHHHHHHHHhhhccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccccCcccccCCC
Q 001963 395 STDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPP 474 (990)
Q Consensus 395 ~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~n~s~~~~ 474 (990)
.++.|+++|++.|||||||||+|++|.+||.++|..|+..|+++++.+|+.|.... ..+|++|++||+|+||.
T Consensus 402 dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~-------~~~f~~C~~lNiS~C~~ 474 (996)
T KOG1959|consen 402 DLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP-------NGEFQSCLLLNISECAF 474 (996)
T ss_pred cHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CccchhhhhhccccCCC
Confidence 89999999999999999999999999999999999999999999999999998642 34799999999999999
Q ss_pred CccccCCCCcEEEEEEcCCCceeeEEEEEEEcCceEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEE
Q 001963 475 SEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYW 554 (990)
Q Consensus 475 ~~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (990)
++. .++++.|+|||||+|.++++|+|||+.+++.|+|+.|++|++|++|.......+. .......++
T Consensus 475 t~~---~~~~~~v~~YNpLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~e 541 (996)
T KOG1959|consen 475 TKD---GADNFIVTLYNPLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHE 541 (996)
T ss_pred CcC---CcCcEEEEEEcCCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCce
Confidence 863 3678999999999999999999999999999999999999999999886433321 122356799
Q ss_pred EEEEeecCCCceEEEEEEecCcccCccccceeeeccccCCCceEEcCCeEEEEEeCCCCeEEEEEecCCCcEEEEEEEEE
Q 001963 555 LAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYI 634 (990)
Q Consensus 555 l~f~~~vP~lG~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~l~~~~~~G~l~si~dk~~g~~~~~~~~f~ 634 (990)
|+|.+.|||+|+++|.|+....+...+ .+..............|+|+++++.||.++|.|+++..+.+|++..+.|+|.
T Consensus 542 Lvf~asvpplg~aty~i~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~ 620 (996)
T KOG1959|consen 542 LVFKASVPPLGIATYFIKKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFG 620 (996)
T ss_pred EEEEEEecCccceEEEEeecCcccccc-cccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeE
Confidence 999999999999999999655432210 0111111112334489999999999998889999999988999999999999
Q ss_pred EeeccCCCC--------------------CCeeeEEEEeCCceEEEEEEecCeEEEEEEEecCCCceEEEEEeCcccccC
Q 001963 635 YYRGDDGSK--------------------DLQLSFTILRGPLLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDD 694 (990)
Q Consensus 635 ~Y~~~~g~~--------------------~~~~~i~v~~Gpl~~~v~~~~~~~i~~~vrLy~~~~~ie~e~~V~~i~~~~ 694 (990)
+|.+..|++ +..+.++|+.||++.||+|.++.|++|++|+|+|.+++||||.|||||+++
T Consensus 621 ~Y~~~~g~n~~q~SgAYiFRp~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d 700 (996)
T KOG1959|consen 621 YYKGYRGDNDKQASGAYIFRPGQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDD 700 (996)
T ss_pred EEEeecCCcCCccCcceEecCCCCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCC
Confidence 998776552 113567899999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEeeccCCCeEEEcCCCccceeeccccccCcccccccccccceEeccceeeEEecCcceEEEecccccccc
Q 001963 695 GIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSS 774 (990)
Q Consensus 695 ~~~~e~~~~f~t~I~s~~~fYTDsNG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvl~Drs~G~sS 774 (990)
+.|||++.||+|+|.|+++|||||||++|+||.+++|++|....++||+||||||++.|||+|++.||+|||||+|||||
T Consensus 701 ~~gkEvVtr~~t~i~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsS 780 (996)
T KOG1959|consen 701 GIGKEVVTRFSTEISSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSS 780 (996)
T ss_pred CccceEEEEeccccccCceEEecCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEEEeeccCCcCccccccccccccccccCeEEeeEEEEEecCccchh-hhcccchhhhccCceeeecccCC
Q 001963 775 IADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAA-KWRRSFGQEIYSPFLLAFTEQDG 853 (990)
Q Consensus 775 l~~G~iElmL~Rr~~~DD~rGv~e~l~e~~~~~~~~~gl~~~~~~~l~l~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~ 853 (990)
+.||+||||||||+++||+|||||+|||+.++. .||+++|+|++.|++..+.+ .++|...+++..|.+.+|++...
T Consensus 781 l~dG~lElMLHRRl~~DD~~Gv~EaLnEt~~~~---~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~ 857 (996)
T KOG1959|consen 781 LKDGQLELMLHRRLLNDDGRGVGEALNETVYGH---AGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEG 857 (996)
T ss_pred ccCCeEEEEeeehhhcccccccchhcccccccc---cceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCC
Confidence 999999999999999999999999999999862 79999999999999888775 67888899999999999998766
Q ss_pred CccccccccccccCccccCCCCcceEEEeeecCCCcEEEEEeccccccccCCCcceeeeeccccCCcCccceEEeccccc
Q 001963 854 DHWANSHLATYSAMDTTYVLPDNVALITLQELDSGKILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISKVTEMNLSA 933 (990)
Q Consensus 854 ~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~~illRl~~l~~~~~~~~~s~~~~v~l~~lf~~~~~~~i~EtsLt~ 933 (990)
..+........+.+..+.+||.+||||||++|+++.+||||+|+|++|||+.+|++++|||.+||..+++..|+||||+|
T Consensus 858 ~~~~~~~s~~~~~f~~~~~lP~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~g 937 (996)
T KOG1959|consen 858 GEALNSLSIPGSAFSGSYDLPQSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDG 937 (996)
T ss_pred ccchhhcCCCccccccccCCCcceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccC
Confidence 44443322222222223589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhcceeeeec-CC-C--CCCCcccCCCCCCC-CCceEEecCcceeEEEEEEeec
Q 001963 934 NQERAVMEKKRLVWRVE-GS-S--KEQPTAVRGSPVDP-AKLVVELAPMEIRTFVIEFYSE 989 (990)
Q Consensus 934 ~~~~~~~~~~r~~w~~~-~~-~--~~~~~~~~~~~~~~-~~~~i~l~PmeIrTf~i~~~~~ 989 (990)
|+++++| +|++|... .+ . .....+.++.|+++ +.+.|+|.|||||||+|+++++
T Consensus 938 N~~ls~m--kr~k~~~~~~G~~~~~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~~~~ 996 (996)
T KOG1959|consen 938 NQPLSDM--KRFKFHWDVSGEKPSGVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKFQQK 996 (996)
T ss_pred ccChhhh--hhhccccCCCCCCCCCccccccCCCCCCcccceEEEEeccEEEEEEEEEecC
Confidence 9999999 66666554 22 1 12223456666664 6789999999999999998764
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.5e-179 Score=1644.55 Aligned_cols=908 Identities=27% Similarity=0.476 Sum_probs=755.8
Q ss_pred cceeeeecCCCCCCCCeeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHH
Q 001963 19 ESKYMMYNTSAGIVPGKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQ 98 (990)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~ 98 (990)
++-.|.|+...+. +++++||||||||||+|||||++|||. +.+++||++||+.|++||+|||+|+|++||+
T Consensus 24 qg~~~~y~~~~~~-~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~ 94 (1050)
T PLN02701 24 QGWRVKYRGDEWD-REKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLE 94 (1050)
T ss_pred cccceeecccccC-CcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHH
Confidence 4456778887765 788999999999999999999999997 8899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHH
Q 001963 99 RWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYL 178 (990)
Q Consensus 99 ~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~l 178 (990)
+||++++|+++++||+||++||||||||||||+|||++|||+|||||++||+|++++||+.|++||+|||||||++||+|
T Consensus 95 ~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~L 174 (1050)
T PLN02701 95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYL 174 (1050)
T ss_pred HHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEeecCHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCC-CCC-----CCCCCCc--cccCCC----
Q 001963 179 LSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPK-NYE-----PPSDNFY--FEVGDT---- 246 (990)
Q Consensus 179 l~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~-~Y~-----~p~~~f~--f~~~~~---- 246 (990)
| ++|||++++|+|++|++|..+..++.+||+|+++++.++|++||||+||+ +|+ .||++|| ||..+.
T Consensus 175 l-~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~ 253 (1050)
T PLN02701 175 L-RRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQ 253 (1050)
T ss_pred H-HhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccc
Confidence 9 99999999999999999999999999999999987777799999999994 553 3336777 555421
Q ss_pred --CCCccCC-ccccCCChHHHHHHHHHHHHHHhhhcCCCeEEEeecCCCCC---cchHHHHHHHHHHHHHHhcCC--Cee
Q 001963 247 --SPIVQDD-MNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKY---QYAHTWFRQMDKFIHYVNQDG--RVN 318 (990)
Q Consensus 247 --~~p~~~~-~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~y---~~a~~~~~~~~~li~~~N~~~--~~~ 318 (990)
.|||.++ +.++++|+++|++.|++++++++..|++|++|+|+|+||+| .+|..||+||++||+++|+++ .++
T Consensus 254 ~~~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~ 333 (1050)
T PLN02701 254 YELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAE 333 (1050)
T ss_pred cccCcccCCccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCce
Confidence 2455444 46788999999999999999999999999999999999999 468889999999999999774 489
Q ss_pred EEeCChhhHHHHHHhcC----------------CCCCcccCCCccccccCCCceeeeeecccchhhHHHHhhHHHHHHHH
Q 001963 319 ALYSTPSMYIDAKYAAN----------------ESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQ 382 (990)
Q Consensus 319 i~~sT~~~Yf~a~~~~~----------------~~~p~~~gDf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~ae~ 382 (990)
++||||++||+++++.. ..||++.||||||+++.++||||||||||.+|+++|.+|++|++||+
T Consensus 334 i~~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~ 413 (1050)
T PLN02701 334 VKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEI 413 (1050)
T ss_pred EEECCHHHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 57999999999999999999999999999999999999999999999
Q ss_pred HHhhcc--------cccC---CCchHHHHHHHHhhhccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 001963 383 LEFFKG--------RNEV---GLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSK 451 (990)
Q Consensus 383 l~~l~~--------~~~~---~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~ 451 (990)
|++++. ..++ .+.++.+|++|+++||||||||||+++|++||..||.+|+..++.+++.+++.|+....
T Consensus 414 L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhHDaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~ 493 (1050)
T PLN02701 414 LFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRH 493 (1050)
T ss_pred HHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccCcCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999842 2344 24578999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCCccccccc-CcccccCCCCcc-ccCCCCcEEEEEEcCCCceeeEEEEEEEcCceEEEEcCCCCEEEEEEeeccc
Q 001963 452 NGCVNPITNFQQCP-LLNISYCPPSEV-DLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLK 529 (990)
Q Consensus 452 ~~~~~~~~~~~~~~-~~n~s~~~~~~~-~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~ 529 (990)
..+..+...|+.|. .+|++.||.+.. .+..++...|+|||||+|+|+++|+|+|+.+.+.|+|.+|++|++|+++.+.
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~ 573 (1050)
T PLN02701 494 EKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQ 573 (1050)
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecccc
Confidence 21222334577784 468899987742 2233566899999999999999999999999999999999999999998754
Q ss_pred ccccccccccccccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCcccCcccccee--------------eeccccCCC
Q 001963 530 DSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTV--------------YKSQIRQND 595 (990)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~~~~~--------------~~~~~~~~~ 595 (990)
.... ......|+|.|.++||||||++|+|............+.+ ........+
T Consensus 574 ~~~~-------------~~~~~~~~l~F~a~vPplG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1050)
T PLN02701 574 HDGE-------------KLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGD 640 (1050)
T ss_pred cccc-------------ccccceEEEEEEEecCCceeEEEEEEEcCCCcccccccccccccccccccccccccccccCCC
Confidence 2100 0123568999999999999999999865322110000000 000011234
Q ss_pred ceEEcCCeEEEEEeCCCCeEEEEEecCCCcEEEEEEEEEEeeccC-CCC----C--------CeeeEEEEeCCceEEEEE
Q 001963 596 TIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDD-GSK----D--------LQLSFTILRGPLLDEVHQ 662 (990)
Q Consensus 596 ~~~ieN~~~~l~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~-g~~----~--------~~~~i~v~~Gpl~~~v~~ 662 (990)
.++|||++++|+||+.+|.|++|++|++|++..++++|.+|.++. |.+ + ....+.+++||++++|++
T Consensus 641 ~~~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f~~Y~s~~SGAYiFrP~~~~~p~~~~~~~~~v~~Gplv~eV~~ 720 (1050)
T PLN02701 641 TVEISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHS 720 (1050)
T ss_pred cEEEecCeEEEEEcCCCCceeEEEecccCceecceeeeeeecCCCCcceEEcCCCCCcccCCCCceEEEEeCCEEEEEEE
Confidence 589999999999999999999999999999999999999997654 333 1 112346889999999999
Q ss_pred Ee-----cCeEEEEEEEecC-----CCceEEEEEeCcccccCCCCcEEEEEEEeeccCCCeEEEcCCCccceeecccccc
Q 001963 663 RI-----NPWIYQVTRVYKG-----KDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRK 732 (990)
Q Consensus 663 ~~-----~~~i~~~vrLy~~-----~~~ie~e~~V~~i~~~~~~~~e~~~~f~t~I~s~~~fYTDsNG~~~ikR~~~~r~ 732 (990)
.+ +++++|++|||++ ...+|++++||+||. +..|||++|||+|+|+|+++||||+|||||+||+
T Consensus 721 ~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~----- 794 (1050)
T PLN02701 721 VPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE----- 794 (1050)
T ss_pred EeecccCCcceEEEEEEecCCCccccceEEEEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec-----
Confidence 76 4789999999998 678999999999986 6789999999999999999999999999999997
Q ss_pred CcccccccccccceEeccceeeEEe-cCcceEEEecccccccccCCCeEEEEEEEEeeccCCcCcccccccccccccccc
Q 001963 733 DWNLEVNQPIAGNYYPVNLGIYMKD-NSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCE 811 (990)
Q Consensus 733 ~w~~~~~~pv~~NyYPv~s~~~I~D-~~~~ltvl~Drs~G~sSl~~G~iElmL~Rr~~~DD~rGv~e~l~e~~~~~~~~~ 811 (990)
+|+ ++|++||||||+++|||+| ++.||||+||||+||||+++|+|||||||||++||+|||||||+|+.
T Consensus 795 ~~~---~~Pv~gNYYPv~s~a~IqD~~~~rltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dnk------- 864 (1050)
T PLN02701 795 TYD---KIPLQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNR------- 864 (1050)
T ss_pred ccc---cCccccccccccceEEEEcCCCCeEEEEeccCcccccCCCcEEEEEEEeecccccCccccccccccc-------
Confidence 333 6999999999999999999 66899999999999999999999999999999999999999999974
Q ss_pred CeEEeeEEEEEecCccchh---h---------hcccchhhhccCceeeecccCCC-ccccccccccccCccccCCCCcce
Q 001963 812 GLTIIGKYYLRIDPVGEAA---K---------WRRSFGQEIYSPFLLAFTEQDGD-HWANSHLATYSAMDTTYVLPDNVA 878 (990)
Q Consensus 812 gl~~~~~~~l~l~~~~~~~---~---------~~r~~~~~l~~p~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~lp~nvh 878 (990)
++..+|+|+||+..... . ..+..+..|++|+++|++..... ........+|++|.+ +||||+|
T Consensus 865 --~~~~~f~ll~e~~~~~~~~~~~~~~~~~Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~--~lpcD~h 940 (1050)
T PLN02701 865 --PMNVVFHLLLESNISSSPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK--PLPCDLH 940 (1050)
T ss_pred --cccceEEEEEecccccCCCCCCCCcCCccHHHHHHHHhhcCCchhhcccCccccccccccccccccccC--CCCCcEE
Confidence 57889999999655321 0 11235678899999888533221 111111267888865 8999999
Q ss_pred EEEeeecCCC-------------cEEEEEeccccccc----cCCCc--ceeeeeccccCCcCccceEEeccccccchhhH
Q 001963 879 LITLQELDSG-------------KILLRLAHLYEIEE----DTDLS--VMSSVELKKVFPKKKISKVTEMNLSANQERAV 939 (990)
Q Consensus 879 lltl~~~~~~-------------~illRl~~l~~~~~----~~~~s--~~~~v~l~~lf~~~~~~~i~EtsLt~~~~~~~ 939 (990)
|+|||++... -||+|.+ ++|+- +..++ +...|+|.+||.++.+.++++||||..++..+
T Consensus 941 lv~lrt~~~~~~~~~~~~~~~~~~~l~r~~--~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~~~~~~~ 1018 (1050)
T PLN02701 941 IVNFKVPRPSKYSQQEAEDPRFGLLLQRRG--WDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAE 1018 (1050)
T ss_pred EEEeeccCCcccccccCCCccEEEEEEecc--cCcccccCCCccCcccCCcccchhhhhcccceeeeecccccccccchh
Confidence 9999976532 2778876 44431 11122 12239999999999999999999999988766
Q ss_pred hhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEEEe
Q 001963 940 MEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEFY 987 (990)
Q Consensus 940 ~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~i~~~ 987 (990)
|. .+...- .. .++...|.|.||||+||+++++
T Consensus 1019 ~~----~~~~~~----------~~--~~~~~~i~l~pmei~~~~~~~~ 1050 (1050)
T PLN02701 1019 ML----GYRKQA----------GS--AAQEGIVLISPMEIQAYKLDLR 1050 (1050)
T ss_pred hc----cccccc----------cc--cCCccceeeccceeeeEEEecC
Confidence 51 111110 00 1123479999999999999874
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-159 Score=1345.90 Aligned_cols=888 Identities=29% Similarity=0.467 Sum_probs=725.2
Q ss_pred ceeeeecCCCCCCCCeeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHHH
Q 001963 20 SKYMMYNTSAGIVPGKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQR 99 (990)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~ 99 (990)
.-.|.|+...+....+++|+||||||+|+||++||++||. ...++||++++..|.++|++||+|+|++||.+
T Consensus 147 G~~i~yd~~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~--------~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ 218 (1129)
T KOG1958|consen 147 GFKITYDPKKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQ--------RQTRHILNNMVNKLSEDPRMKFIWAEISFLER 218 (1129)
T ss_pred CceeecChhhcccccceEEEEeeccCCCcchhhhHHHHHH--------HHHHHHHHHHHHHhhhCcccchhhhhHHHHHH
Confidence 3456788887777777999999999999999999999998 88999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHH
Q 001963 100 WWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLL 179 (990)
Q Consensus 100 w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll 179 (990)
||..++|+.++.||.||++||||||+|||||||||.+||.+||+|+++||+||+.++|+.|+++|.|||||||++||+||
T Consensus 219 ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL 298 (1129)
T KOG1958|consen 219 WWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLL 298 (1129)
T ss_pred hhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEEEeecCHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCC-CCCCC---------CCCCccccCC---C
Q 001963 180 SAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPK-NYEPP---------SDNFYFEVGD---T 246 (990)
Q Consensus 180 ~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~-~Y~~p---------~~~f~f~~~~---~ 246 (990)
+++||++++|+|+||..|..++..|++||+||+.|+..+.++||||+||+ +|+.| +|+|||.+++ .
T Consensus 299 -~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~ 377 (1129)
T KOG1958|consen 299 -RRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGC 377 (1129)
T ss_pred -hhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCc
Confidence 89999999999999999999999999999999999988889999999998 88766 2689999874 2
Q ss_pred CCCc-cCCccccCCChHHHHHHHHHHHHHHhhhcCCCeEEEeecCCCCCcchHHH---HHHHHHHHHHHhcCC--CeeEE
Q 001963 247 SPIV-QDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTW---FRQMDKFIHYVNQDG--RVNAL 320 (990)
Q Consensus 247 ~~p~-~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~y~~a~~~---~~~~~~li~~~N~~~--~~~i~ 320 (990)
.||| ..+..|++.||++||+.+++|++++++.|++|.+|+|.||||+|....+| |.|+.+|+++||+.+ ++.++
T Consensus 378 ~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aq 457 (1129)
T KOG1958|consen 378 ECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQ 457 (1129)
T ss_pred CCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhcccccceeee
Confidence 3566 56668999999999999999999999999999999999999999988777 999999999999864 78899
Q ss_pred eCChhhHHHHHHhc------C-CCCCcccCCCccccccCCCceeeeeecccchhhHHHHhhHHHHHHHHHHhhcc-----
Q 001963 321 YSTPSMYIDAKYAA------N-ESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKG----- 388 (990)
Q Consensus 321 ~sT~~~Yf~a~~~~------~-~~~p~~~gDf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~~----- 388 (990)
|+|++|||+|+++. + ..+|+++||||+|+|+.++||||||||||.+|++.|.+|++||+||++.++|.
T Consensus 458 FGTlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r 537 (1129)
T KOG1958|consen 458 FGTLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHR 537 (1129)
T ss_pred cCCHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999875 1 34799999999999999999999999999999999999999999999998641
Q ss_pred --cc--cCC---CchHHHHHHHHhhhccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCCCcc
Q 001963 389 --RN--EVG---LSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSK-NGCVNPITN 460 (990)
Q Consensus 389 --~~--~~~---~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~ 460 (990)
.. .+. ..+..|||+|+++|||||||||||++|+.||..||..++..++.++.+++..|+.... +....+...
T Consensus 538 ~~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~ 617 (1129)
T KOG1958|consen 538 VGLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQRLHESLVNLQIVLENALELLLGKDSETYNSDPSHS 617 (1129)
T ss_pred hhhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCC
Confidence 11 111 3477899999999999999999999999999999999999999999999999887431 111111111
Q ss_pred cccccCc--ccccCCC-CccccCCCCcEEEEEEcCCCceeeEEEEEEEcCceEEEEcCCCCEEEEEEeeccccccccccc
Q 001963 461 FQQCPLL--NISYCPP-SEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNS 537 (990)
Q Consensus 461 ~~~~~~~--n~s~~~~-~~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~ 537 (990)
+-+.... +.+..|. +-..+ ...+..|++||||.+.|.++|+|.|+.+.|.|.+..|++|++||.|+|..+...
T Consensus 618 ~~emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk--- 693 (1129)
T KOG1958|consen 618 FIEMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVTIRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK--- 693 (1129)
T ss_pred ceehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEEEEecCCeeEEEcCCCceeeEeeccceeccccc---
Confidence 1111100 1111121 00112 233478999999999999999999999999999999999999999999622110
Q ss_pred ccccccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCcccCccccce--------eeec--cccCCCceEEcCCeEEEE
Q 001963 538 YSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRT--------VYKS--QIRQNDTIEVGPGNLKLL 607 (990)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~ieN~~~~l~ 607 (990)
......|.|+|.+.|||||..+|++..+..+......++ +... -........++|++..+.
T Consensus 694 ---------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~ 764 (1129)
T KOG1958|consen 694 ---------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKLPSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELR 764 (1129)
T ss_pred ---------eeecceeEEEEEEecccceeeEEEeeccCcccccccccCCCCcccCCCccceeecCccccceeeccceeEE
Confidence 112347899999999999999999987632211111000 0000 011122358999999999
Q ss_pred EeCCCCeEEEEEecCCCcEEEEEEEEEEeeccCC-C----C----CC---------eeeEEEEeCCceEEEEEEecC---
Q 001963 608 YSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDG-S----K----DL---------QLSFTILRGPLLDEVHQRINP--- 666 (990)
Q Consensus 608 ~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g-~----~----~~---------~~~i~v~~Gpl~~~v~~~~~~--- 666 (990)
||+++|+|+++..+.+++...++..|..|.+..+ + + .+ ...+.+ +|+|+++|.+...+
T Consensus 765 fd~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~~~~sgaylf~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~ 843 (1129)
T KOG1958|consen 765 FDPETGTIKSINSLSDNKHFESQVSFSNYGERISGDESGAYLFLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLH 843 (1129)
T ss_pred eccccchhhhhhhcccCCCcccceeeccccccccCCCCceEEEccCCCCCCceecCCCeEEe-ecceeeeeccccchHHH
Confidence 9999999999988888888888888988864322 2 1 11 123445 99999999987753
Q ss_pred eEEEEEEEecCCCceEEEEEeCcccccCCCCcEEEEEEEeeccCCCeEEEcCCCccceeeccccccCcccccccccccce
Q 001963 667 WIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNY 746 (990)
Q Consensus 667 ~i~~~vrLy~~~~~ie~e~~V~~i~~~~~~~~e~~~~f~t~I~s~~~fYTDsNG~~~ikR~~~~r~~w~~~~~~pv~~Ny 746 (990)
...|.+|+|.|. .+|++..| ++.+..|.|++|||+|++++.+.||||+||+||+||++. .+.|+++||
T Consensus 844 ~~~~~~~~~~G~-~vei~~~v---di~~~~n~Ela~R~st~vds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNy 911 (1129)
T KOG1958|consen 844 RLSQNVRGYSGE-EVEISNSV---DIRKEDNTELAMRFSTDVDSGDLFYTDLNGMQMIKRRRL--------DKLPLQANY 911 (1129)
T ss_pred hchhheeccCCc-ceeeecee---ecccccchhhhhhhhhcccCCceeeeccchhhhhhhhhc--------ccCccccee
Confidence 233788999886 68888776 466678999999999999999999999999999999875 478999999
Q ss_pred EeccceeeEEecCcceEEEecccccccccCCCeEEEEEEEEeeccCCcCccccccccccccccccCeEEeeEEEEEecCc
Q 001963 747 YPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPV 826 (990)
Q Consensus 747 YPv~s~~~I~D~~~~ltvl~Drs~G~sSl~~G~iElmL~Rr~~~DD~rGv~e~l~e~~~~~~~~~gl~~~~~~~l~l~~~ 826 (990)
|||++++||+|.+.||++++.+++|++|+.+|+||||++||+.+||+||||+|+.|+. ++..+|+|++++.
T Consensus 912 YPmpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL~~DD~rGLgqGv~DNk---------~t~~~frlv~e~~ 982 (1129)
T KOG1958|consen 912 YPMPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRLNQDDGRGLGQGVIDNK---------PTDMKFRLVLESL 982 (1129)
T ss_pred ecccceeeeecCCceEEEEeecccCccccccceEEEEecccccCCCCccccccccccc---------hhhheeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999998763 5778999999977
Q ss_pred cchhh------------hcccchhhhccCceeeecccCCCccccccccccccCccccCCCCcceEEEeeecCCCc-----
Q 001963 827 GEAAK------------WRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALITLQELDSGK----- 889 (990)
Q Consensus 827 ~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~~----- 889 (990)
+.++. ..+...+.+++|+..++..... +... ...|.++. .+||||+||+|++++.+..
T Consensus 983 ~s~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~i~~-~g~~~~~~--~~lpcDl~lvt~rtl~~~~~~~~~ 1057 (1129)
T KOG1958|consen 983 NSAQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--KIED-QGIFEPLN--LSLPCDLHLVTFRTLESSKAAEKR 1057 (1129)
T ss_pred ccccCchhcCCCCChhhhhhcccceecCCchhhcccCCC--Chhh-cccccccc--CCCccceeEEEeeeccCccccccc
Confidence 64321 1123457788999887733221 2211 23355554 3899999999999997543
Q ss_pred ---EEEEEeccccccc-cCCCcceeeeeccccCCcCccceEEeccccccchhhHhhhcceeeeecCCCCCCCcccCCCCC
Q 001963 890 ---ILLRLAHLYEIEE-DTDLSVMSSVELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPV 965 (990)
Q Consensus 890 ---illRl~~l~~~~~-~~~~s~~~~v~l~~lf~~~~~~~i~EtsLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~ 965 (990)
||+|-+ .+|+. +.-.+...++++.+++.. +.+++.|+|++.+..... .+
T Consensus 1058 ~~lil~R~~--~~c~~~~~g~c~~~ki~~~~ll~~--~~~v~~tsLs~l~~~~~~----------------------~~- 1110 (1129)
T KOG1958|consen 1058 AALILHRHA--TDCRSQKKGTCGQLKISVMDLLIK--AKSVKKTSLSLLQEVGGI----------------------IG- 1110 (1129)
T ss_pred ceeeeeecc--cccccccccccccccCcHHHHHHH--HHhhchhhHHhhhhcccC----------------------CC-
Confidence 777753 55542 111122457888888886 889999999998655432 11
Q ss_pred CCCCceEEecCcceeEEEEEE
Q 001963 966 DPAKLVVELAPMEIRTFVIEF 986 (990)
Q Consensus 966 ~~~~~~i~l~PmeIrTf~i~~ 986 (990)
.....++||||++|.+.+
T Consensus 1111 ---~~~~~~~pme~~~~l~~~ 1128 (1129)
T KOG1958|consen 1111 ---VEEQELSPMEISAFLTSL 1128 (1129)
T ss_pred ---cccccccccccccccccc
Confidence 113557999999998764
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=9.8e-104 Score=981.66 Aligned_cols=808 Identities=16% Similarity=0.197 Sum_probs=595.5
Q ss_pred eeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEE-EechhHHHHHHhcCCHHHHHHHH
Q 001963 35 KINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFI-YVEQAFFQRWWRDQSEEVQNVVK 113 (990)
Q Consensus 35 ~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~-~~e~~~~~~w~~~~~p~~~~~vk 113 (990)
+++||+|||||||+|||||++++. .++.+++++|+++|+++|+++|. +++|..+.+||.+.+|+.+++||
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~---------~~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~~~~ik 73 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSR---------ILLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPEDKERVK 73 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhH---------HHHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHHHHHHH
Confidence 478999999999999999999986 57889999999999999999975 44555556666689999999999
Q ss_pred HHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEeec
Q 001963 114 QLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARI 193 (990)
Q Consensus 114 ~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri 193 (990)
+||++||| ++||||||+||+++||||+||||++|++|+ ++||..|++||+|||||||++||||| ++|||+++++||+
T Consensus 74 ~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~wr~ 150 (875)
T PRK09819 74 KLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFWRG 150 (875)
T ss_pred HHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEEec
Confidence 99999999 566666999999999999999999999998 79999999999999999999999999 9999999999997
Q ss_pred CHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCccccCCCCCCccCCccccCCChHHHHHHHHHHHH
Q 001963 194 DYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAI 273 (990)
Q Consensus 194 ~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~ 273 (990)
... +...+..+|+|+|+| ||+||||++|.+|+.+ ..+ | ....+++++++.+++.++
T Consensus 151 ~~~----~~~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g-~~~---------~------~~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 151 VSD----RHGTDKTEFLWQSDD----GSEVLAQQLPLGYAIG-KYL---------P------EDEEELKKRLDEYFGVLE 206 (875)
T ss_pred ccc----cccCCCceEEEECCC----CCeEEEEECccccccC-CCC---------C------cCHHHHHHHHHHHHHHHh
Confidence 532 111346799999999 9999999999999865 111 1 122366777777777666
Q ss_pred HHhhhcCCCeEEEeecCCCCCcchHHHHHHHHHHHHHHhcC-CCeeEEeCChhhHHHHHHhcCCCCCcccCCCc-ccccc
Q 001963 274 AQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQD-GRVNALYSTPSMYIDAKYAANESWPLKTDDFF-PYADR 351 (990)
Q Consensus 274 ~~~~~~~~~~il~~~G~Df~y~~a~~~~~~~~~li~~~N~~-~~~~i~~sT~~~Yf~a~~~~~~~~p~~~gDf~-py~~~ 351 (990)
++ ..++++|+|+|+|+.+.. ++|.++|+.+|+. +.+++++||+++||++++++...||+++|||+ |+..+
T Consensus 207 ~~---~~~~~~l~~~G~d~~p~~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~~ 278 (875)
T PRK09819 207 KK---SSTKNILLPNGHDQMPLQ-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYMR 278 (875)
T ss_pred hc---CCCCcEEEecCCCCCccc-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcccc
Confidence 55 578999999999997765 5788888888865 56899999999999999987788999999998 43332
Q ss_pred CCCceeeeeecccchhhHHHHhhHHHHH-HHHHHhhc---ccccCCCchHHHHHHHHhhhccccccCcccccchHHHHHH
Q 001963 352 ENAYWTGYFTSRPALKGYVRTMSAYYLA-ARQLEFFK---GRNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKR 427 (990)
Q Consensus 352 ~~~yWtG~yTSr~~~K~~~R~~e~~L~~-ae~l~~l~---~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~r 427 (990)
+.+||||||+.+|+++|++|++|+. +|.|.+++ |..||...++++|+.|+++||||+||||++++|++|+..|
T Consensus 279 ---~HrG~~TSr~~iK~~nr~~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r 355 (875)
T PRK09819 279 ---VHRSIFSTRMDIKIANARIENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVAR 355 (875)
T ss_pred ---ccCCccccHHHHHHHHHHHHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHH
Confidence 2369999999999999999999974 89888875 4567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccccCcccccCCCCccccCCCCcEEEEEEcCCCceeeEEEEEEE--
Q 001963 428 LSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPV-- 505 (990)
Q Consensus 428 l~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~n~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~i~v-- 505 (990)
+.++.+.++++++.+++.|+.... .++...++||||++|+|+++|++++
T Consensus 356 ~~~~~~~~~~l~~~~l~~l~~~i~-----------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~~ 406 (875)
T PRK09819 356 YKLAEDLADNLLDFYMRKIADNMP-----------------------------QSDADKLTVFNLLPYEREEVINTTVYL 406 (875)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----------------------------cCCCCEEEEEcCCCccceeEEEEEEEe
Confidence 999999999999999999875320 1334689999999999999999876
Q ss_pred cCceEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEE-eecCCCceEEEEEEecCcccCccccc
Q 001963 506 INENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFS-ASVPPLGFNTYIISSAKQAASHSGMR 584 (990)
Q Consensus 506 ~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~-~~vP~lG~~~y~i~~~~~~~~~~~~~ 584 (990)
+...+.+.|.+|++|++|+...................+.. ....+.+.|. ++||||||++|.+...+......
T Consensus 407 ~~~~~~~~d~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~~--- 481 (875)
T PRK09819 407 PASQFTLRDDRGNPLPYTIREKRDIDPGLLDRQIVHYGNYD--PFMEFDIQINVQILPAMGYRTLYIELNEEGNVIE--- 481 (875)
T ss_pred ccCCEEEECCCCCEeeEEEeeccccccchhhcceeccCCCC--ceEEEEEEEEECCCCCcccEEEEEEeCCcccccc---
Confidence 46788999999999999998654321111000000000000 0125678887 48999999999987654321100
Q ss_pred eeeeccccCCCceEEcCCeEEEEEeCCCCeEEEEEecCCCcEEEEEEEEEEee-ccCCCC--------------CC-eee
Q 001963 585 TVYKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYR-GDDGSK--------------DL-QLS 648 (990)
Q Consensus 585 ~~~~~~~~~~~~~~ieN~~~~l~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~-~~~g~~--------------~~-~~~ 648 (990)
........|||++|+|+|| .+|.| +|+||.+|+++. ..+.+++ ++.||. .. ...
T Consensus 482 ------~~~~~~~~ieN~~~~v~i~-~~G~l-~l~dk~~gr~~~--~~~~~~d~~d~gD~yd~~p~~~d~~~~~~~~~~~ 551 (875)
T PRK09819 482 ------PKSSAEGIIENEFYQITLN-ENGTL-TIVDKKSGKTYD--RQLIIEENGDDGDEYDYSPPREDWVITSAEAVPS 551 (875)
T ss_pred ------ccccccceEecCcEEEEEe-cCCcE-EEEECCCCcEEe--ceEEEEecCcCCCCcccCCCCCCCEEeccCCcce
Confidence 1123457899999999999 78999 599999999874 2233332 334442 01 235
Q ss_pred EEEEeCCceEEEEEEec------------------CeEEEEEEEecCCCceEEEEEeCcccccCCCCcEEEEEEEeeccC
Q 001963 649 FTILRGPLLDEVHQRIN------------------PWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMIS 710 (990)
Q Consensus 649 i~v~~Gpl~~~v~~~~~------------------~~i~~~vrLy~~~~~ie~e~~V~~i~~~~~~~~e~~~~f~t~I~s 710 (990)
+.+++||+.+++++.+. +.++|+++|++++++|+|++.|++. ..+|.+++.|+++|.+
T Consensus 552 ~~v~~~~~~~~~~i~~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lrv~fp~~i~~ 627 (875)
T PRK09819 552 VEISHSAWQSRAVIRYRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLRVLFPTEIAS 627 (875)
T ss_pred EEEEEcCCeEEEEEEEEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEEEEccCCCCC
Confidence 67788999888776542 4688999999999999999999754 4689999999999999
Q ss_pred CCeEEEcCCCccceeecccc--ccCcccc--cccccccceEeccceeeEEecCcceEEEecccccccccCC--CeEEEEE
Q 001963 711 NKTFYTDSSGRDFIERIRDY--RKDWNLE--VNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIAD--GQLELML 784 (990)
Q Consensus 711 ~~~fYTDsNG~~~ikR~~~~--r~~w~~~--~~~pv~~NyYPv~s~~~I~D~~~~ltvl~Drs~G~sSl~~--G~iElmL 784 (990)
...+| +.+|++++|+++. .++|+.. .+.|++ .||+.+|+.|.|.+.+++|+||+.+|+.-..+ ++|.|+|
T Consensus 628 ~~~~~--d~~fG~i~Rp~~~~~~~~W~~~~~~e~p~~--~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~~~~~i~LTL 703 (875)
T PRK09819 628 KFSLA--DQQFGSITRPVNDPAMDVWEQEGWQEAPIS--IEPMQSFVALHDERHGVAVFTEGVREYEIIGENYDTIALTL 703 (875)
T ss_pred CceEc--CCCceEEECCCcCccccccccccceeCCCC--ChhhhceEEEecCCceEEEECCCcceEEEecCCCCeEEEEe
Confidence 87666 5999999999754 4688753 344555 89999999999999999999999999975433 4899999
Q ss_pred EEEeec---c-----CCcCccccccccccccccccCeEEeeEEEEEec--CccchhhhcccchhhhccCceeeecccC--
Q 001963 785 HRRLVA---D-----DNRGVSEALNETVCVFDKCEGLTIIGKYYLRID--PVGEAAKWRRSFGQEIYSPFLLAFTEQD-- 852 (990)
Q Consensus 785 ~Rr~~~---D-----D~rGv~e~l~e~~~~~~~~~gl~~~~~~~l~l~--~~~~~~~~~r~~~~~l~~p~~~~~~~~~-- 852 (990)
.|...+ + -+|.-|..+-+.. .+|.|. ..-+|.|..- .... +. ..+.++.++.|+.++-....
T Consensus 704 lRs~g~lgk~~l~~rpgr~sG~~~ptP~---aq~~G~-h~f~y~l~ph~g~~~~-~~-~~~~a~~~n~p~~~~~~~~~~~ 777 (875)
T PRK09819 704 FRGVGLLGKEDLLYRPGRPSGIKIPTPD---SQLLGE-LSFRFSLTSYEGTFDE-AG-VAQQAKEYLTPVQCYNKIPFLN 777 (875)
T ss_pred ecccCccCCCccccCCCcccCCccCCCh---HHhcCc-eEEEEEEEEccCCcch-HH-HHHHHHHhccCcceeecccccc
Confidence 999743 1 1222222121111 123342 2334444432 1111 11 23467888888875421100
Q ss_pred --CCccccccccccccCccccCCCCcceEEEeeecCCC-cEEEEEeccccccccCCCcceeeeeccccCCcCccceEEec
Q 001963 853 --GDHWANSHLATYSAMDTTYVLPDNVALITLQELDSG-KILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISKVTEM 929 (990)
Q Consensus 853 --~~~~~~~~~~~~~~l~~~~~lp~nvhlltl~~~~~~-~illRl~~l~~~~~~~~~s~~~~v~l~~lf~~~~~~~i~Et 929 (990)
...-......+++.+. -.+.+|.+-++|+..++ .++||+- +...... ..+.+.+ +..+..+.|+
T Consensus 778 ~~~~~~~~~~~~~~s~~~---~~~~~i~~sa~K~aed~~~~ilRly---n~~~~~~--~~~~l~~-----~~~~~~~~~~ 844 (875)
T PRK09819 778 MRLNDEEFTLPESYSLLK---MPPDGAVLSAVKKAEDRDGLILRFF---NPAESKT--CDATVAF-----SKEVKSLDET 844 (875)
T ss_pred cccCcccCCCCcccccee---eCCCCEEEEEEEEeccCCCEEEEEe---CCCCCcc--cccccee-----ccchhheeec
Confidence 0000001112233221 12458999999998765 4999955 4321110 0112211 2345667788
Q ss_pred cccccchhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEE
Q 001963 930 NLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIE 985 (990)
Q Consensus 930 sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~i~ 985 (990)
+|-.... .+. .+..+. .++|.|.||+|++|.
T Consensus 845 ~l~E~~~-~~~-----------------------~~~~~~-~~~~~p~eI~T~~i~ 875 (875)
T PRK09819 845 MLDEKIT-TEE-----------------------NQGSNL-SGELKPCQVQTFLVK 875 (875)
T ss_pred ccccccc-ccc-----------------------cccccc-cccccCCeeEEEEeC
Confidence 8776421 100 001111 257999999999974
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-76 Score=643.04 Aligned_cols=745 Identities=17% Similarity=0.232 Sum_probs=549.3
Q ss_pred CCeeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHHHHHH
Q 001963 33 PGKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVV 112 (990)
Q Consensus 33 ~~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~v 112 (990)
...-+||-|+|.|+|.+|||+|.|.. +++.+...+.+..|+++|+++|+.+. +.=.+|.++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETr---------RKivRSW~tq~~lMdR~PEy~FvcSQ-AqQ~~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETR---------RKIVRSWVTQLQLMDRNPEYIFVCSQ-AQQLEWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHH---------HHHHHHHHHHHhHHhhCcceeEehhh-HHHHHHHhhhChhHHHHH
Confidence 44689999999999999999999997 58888899999999999999999874 444589999999999999
Q ss_pred HHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEee
Q 001963 113 KQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFAR 192 (990)
Q Consensus 113 k~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R 192 (990)
++.+..||+-.|||.||++|.++|+|||||||++.|++|+.++||...+.-|+||+||+|+|+|||. +.+||+.+++++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQK 426 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQK 426 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCC-CCCCCCCCCccccCCCCCCccCCccccCCChHHHHHHHHHH
Q 001963 193 IDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPK-NYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSA 271 (990)
Q Consensus 193 i~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~-~Y~~p~~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~ 271 (990)
+.|+..+.+++.. |.|.|.| ||+|++|+-|. .|... -+| .+.+..
T Consensus 427 LSWNniNSFPhsT---FnW~glD----GSqvl~HmPPgntYtad-----------------------~~v----~dVL~t 472 (1078)
T KOG4342|consen 427 LSWNNINSFPHST---FNWEGLD----GSQVLVHMPPGNTYTAD-----------------------GSV----EDVLKT 472 (1078)
T ss_pred ccccccCcCCccc---eeeeecc----CceEEEecCCCCccccc-----------------------CcH----HHHHHH
Confidence 9999888888775 9999999 99999998664 45432 122 334444
Q ss_pred HHHHhhhcCCCeEEEeecCCCCCcchHHHHHHHHHHHH---HHhcCC-CeeEEeC-ChhhHHHHHHhc---CCCCCcccC
Q 001963 272 AIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIH---YVNQDG-RVNALYS-TPSMYIDAKYAA---NESWPLKTD 343 (990)
Q Consensus 272 ~~~~~~~~~~~~il~~~G~Df~y~~a~~~~~~~~~li~---~~N~~~-~~~i~~s-T~~~Yf~a~~~~---~~~~p~~~g 343 (990)
+.+....-+.++=|+.+|-....+.+. -+.++||.+ .-|..+ -++++.+ |+.+||+++.+. +..+|+|.|
T Consensus 473 v~qnk~~~~~~~gl~lfG~GDGGGGPT--~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~G 550 (1078)
T KOG4342|consen 473 VAQNKDKGRANHGLFLFGFGDGGGGPT--QEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVG 550 (1078)
T ss_pred HHhcCCccccCcceEEEEecCCCCCCc--HHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccch
Confidence 444444455666666666322222221 134555433 344455 6899999 999999999876 456999999
Q ss_pred CC-ccccccCCCceeeeeecccchhhHHHHhhHHHHHHHHHHhhccc-----ccCCCchHHHHHHHHhhhccccccCccc
Q 001963 344 DF-FPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGR-----NEVGLSTDSLADALALVQHHDAVSGTEK 417 (990)
Q Consensus 344 Df-~py~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~~~-----~~~~~~~~~l~~~l~~~QhHDaItGTs~ 417 (990)
|+ |.+|+ |+|||++.+|+++|++|..|+.+|.+.+++.. .||...++.||+.++++|+||.++|+++
T Consensus 551 ELyfEfHr-------GTYTtqAq~KKlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCI 623 (1078)
T KOG4342|consen 551 ELYFEFHR-------GTYTTQAQIKKLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCI 623 (1078)
T ss_pred heEEEEec-------CceeeHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 95 58886 99999999999999999999999999998643 3567789999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccccCcccccCCCCccccCCCCcEEEEEEcCCCcee
Q 001963 418 QHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKR 497 (990)
Q Consensus 418 ~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~n~s~~~~~~~~~~~~~~~~v~vfNpl~~~r 497 (990)
+.|++|.+-.+......++.++..+++.|.... .+...+++.|+|+|.|
T Consensus 624 eMVykeA~p~~~~v~k~~~tLl~~a~~~L~as~-------------------------------s~ke~L~~~nTLpW~~ 672 (1078)
T KOG4342|consen 624 EMVYKEAMPHYEDVRKHGNTLLSAAAAALCASE-------------------------------SGKEGLLIVNTLPWKR 672 (1078)
T ss_pred HHHHHhhhhHHHHHHHhhHHHHHHHHHHHhcCC-------------------------------CCccceEEEeccccce
Confidence 999999999999999999999999999885321 1233688999999999
Q ss_pred eEEEEEEEcCceEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCcc
Q 001963 498 EDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQA 577 (990)
Q Consensus 498 ~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~ 577 (990)
.+++.++-+..... . + ..++|.+|++...
T Consensus 673 ~~v~~~~kp~k~~~----------~-------------------------------e---~c~~~g~~ta~vt------- 701 (1078)
T KOG4342|consen 673 IEVMALPKPGKAHS----------L-------------------------------E---LCTVPGMGTAPVT------- 701 (1078)
T ss_pred eeeecccCCCCcee----------E-------------------------------E---EeccCCccccCCC-------
Confidence 99887764322110 0 0 1355555544211
Q ss_pred cCccccceeeeccccCCCceEEcCCeEEEEEeCCCCeEEEEEecCCCcEEEE---------EEEEEEe-------eccCC
Q 001963 578 ASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLL---------EQSYIYY-------RGDDG 641 (990)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~ieN~~~~l~~~~~~G~l~si~dk~~g~~~~~---------~~~f~~Y-------~~~~g 641 (990)
++. +++.. -...+.+++.|+.+||+++ .+|.|+||+|...|++..- .++|+.| .+|+-
T Consensus 702 ~~~---~p~~~--yq~Dd~~~L~Ng~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD~PL~WqAWDt 775 (1078)
T KOG4342|consen 702 PPT---SPVFV--YQTDDSVTLDNGILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDDVPLYWQAWDT 775 (1078)
T ss_pred CCC---CceeE--EecCCeEEEECCEEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecCCccchhhhhh
Confidence 000 01111 0234668999999999999 5799999999888887641 1345544 45553
Q ss_pred CC---------CCeeeEE-EEeCCceEEEEEEe----cCeEEEEEEEecCC-----CceEEEEEeCcccccCCCCcEEEE
Q 001963 642 SK---------DLQLSFT-ILRGPLLDEVHQRI----NPWIYQVTRVYKGK-----DHAEIEFTVGPIPIDDGIGKEVVT 702 (990)
Q Consensus 642 ~~---------~~~~~i~-v~~Gpl~~~v~~~~----~~~i~~~vrLy~~~-----~~ie~e~~V~~i~~~~~~~~e~~~ 702 (990)
.. .++..+. -.+|++...+.+.+ ++.+.++|.|..+. +.+.|.++|+ |. +.+|=+.+
T Consensus 776 e~ysle~y~vl~k~k~v~v~~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---Wh-e~~KFLKV 851 (1078)
T KOG4342|consen 776 EDYSLERYPVLGKAKTVAVGTEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---WH-EAHKFLKV 851 (1078)
T ss_pred hhhceecceecCCCceEEeecCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---eh-hcCceEEe
Confidence 32 1223344 36788887766554 46788999987654 6899999985 54 57899999
Q ss_pred EEEeeccCCCeEEEcCCCccceeeccccccCcccccccccccceEeccceeeEEecCcceEEEecccccccccCCCeEEE
Q 001963 703 QITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLEL 782 (990)
Q Consensus 703 ~f~t~I~s~~~fYTDsNG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvl~Drs~G~sSl~~G~iEl 782 (990)
.|+.+|.|.-+.| ..+|++.||+++|+++|+-...+.... .++...|-..+++|||||+||. |....-|.|
T Consensus 852 EFPv~irs~fAsY--EtQFGitkRPTHYNTSWDvAkFEVchh------kfaDySe~~~Gvs~LNDCKYGf-SthGnlmrL 922 (1078)
T KOG4342|consen 852 EFPVRIRSSFASY--ETQFGITKRPTHYNTSWDVAKFEVCHH------KFADYSEHGFGVSLLNDCKYGF-STHGNLMRL 922 (1078)
T ss_pred eccccccccchhh--hhhcccccCCccccccchhhHhHHHHh------hhhhhhhcccceeeeccccccc-ccccceeee
Confidence 9999999865555 899999999999999999876665543 6799999999999999999999 589999999
Q ss_pred EEEEEeeccCCcCccccccccccccccccCeEEeeEEEEEecCccchh-hhcccchhhhccCceeeecccCCCccccccc
Q 001963 783 MLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAA-KWRRSFGQEIYSPFLLAFTEQDGDHWANSHL 861 (990)
Q Consensus 783 mL~Rr~~~DD~rGv~e~l~e~~~~~~~~~gl~~~~~~~l~l~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~ 861 (990)
.|.|....+|.-. |.+ ++.+...+-+...+- +-.-+.+.++++|.-+.....+. -..
T Consensus 923 SLLRsPKaPDAhA------DmG-----------~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~-----an~ 980 (1078)
T KOG4342|consen 923 SLLRSPKAPDAHA------DMG-----------RHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSP-----ANA 980 (1078)
T ss_pred hhhcCCCCCCccc------ccC-----------cceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCC-----CCC
Confidence 9999999999754 332 233344444333211 11123567788887443332221 012
Q ss_pred cccccCccccCCCCcceEEEeeecCC----CcEEEEEeccccc-cccCCCcceeeeeccccCCcCccceEEeccccccch
Q 001963 862 ATYSAMDTTYVLPDNVALITLQELDS----GKILLRLAHLYEI-EEDTDLSVMSSVELKKVFPKKKISKVTEMNLSANQE 936 (990)
Q Consensus 862 ~~~~~l~~~~~lp~nvhlltl~~~~~----~~illRl~~l~~~-~~~~~~s~~~~v~l~~lf~~~~~~~i~EtsLt~~~~ 936 (990)
..|..+. .+=.+||-|-+++..++ ..|+|| +|+. |... .+.+.+ .+.+.++..+.+-....
T Consensus 981 d~~dafs--vsgdpnViLs~iK~aE~~~~~~SivlR---vYEslGg~s----~a~L~~-----sL~v~~~~kcd~LE~d~ 1046 (1078)
T KOG4342|consen 981 DSWDAFS--VSGDPNVILSTIKQAESSPQRRSIVLR---VYESLGGHS----DAWLHL-----SLPVQEAIKCDLLERDP 1046 (1078)
T ss_pred cccccee--ecCCchHHHHHhhhhccCcccceEEEE---ehhhcCCcc----eEEEEE-----eeehhHhhhccchhcCh
Confidence 2333332 13346888888887754 369999 6765 2221 233433 34555565555544321
Q ss_pred hhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEEE
Q 001963 937 RAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEF 986 (990)
Q Consensus 937 ~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~i~~ 986 (990)
-..... + ..+..-...-|.|.|.||.||.+++
T Consensus 1047 ~~~lT~--------~----------~~~~a~~~~pi~lrpfeiAsf~~~l 1078 (1078)
T KOG4342|consen 1047 AGHLTS--------G----------QPPEAHLFSPISLRPFEIASFSATL 1078 (1078)
T ss_pred HhhCcC--------C----------CCchhhhcCCcccceeeeeeeeecC
Confidence 111100 0 0000001234789999999999864
No 6
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=3e-59 Score=512.26 Aligned_cols=270 Identities=30% Similarity=0.522 Sum_probs=216.2
Q ss_pred EEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHHHHHHHHHH
Q 001963 37 NVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLV 116 (990)
Q Consensus 37 ~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 116 (990)
+||||||||+|+||++|+++|. ..+.++|+++++.|+++|++||++.|+.++. ||.+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~-~~~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLE-DYLEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHH-HHHHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHH-HHHHhCCHHHHHHHHHH
Confidence 6999999999999999999995 6999999999999999999999998888875 55555999999999999
Q ss_pred HCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEeecCHH
Q 001963 117 NSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQ 196 (990)
Q Consensus 117 ~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~~ 196 (990)
++||||||||||||+||+++++|++||||++|++|++++||+.|++||+||+||||+++|+|| +++||++++++|+++.
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~ 149 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWN 149 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HH
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCccccCCCCCCccCCccccCCChHHHHHHHHHHHHHHh
Q 001963 197 DRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQA 276 (990)
Q Consensus 197 ~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~ 276 (990)
.+..++..+..+|+|+|+| |++||||+++.+|..|..+. +. ++++.+++++++.+
T Consensus 150 ~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~~~~--------------------~~-~~~~~~~~~~~~~~ 204 (275)
T PF01074_consen 150 DKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPWYGS--------------------EF-EDADELLEQLRKLA 204 (275)
T ss_dssp HHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHHTTC--------------------CH-HHHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEecCC----CcceeEEecccCCCCCCCCc--------------------cc-ccHHHHHHHHHHHH
Confidence 9998888889999999999 89999999998776430011 01 35778899999999
Q ss_pred hhcCCCeEEEeecCCCCCcchHHHHHHHHHHHHHHh---c-CCCeeEEeCChhhHHHHHHhcCCCCCcc-cCCCcccc
Q 001963 277 NITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVN---Q-DGRVNALYSTPSMYIDAKYAANESWPLK-TDDFFPYA 349 (990)
Q Consensus 277 ~~~~~~~il~~~G~Df~y~~a~~~~~~~~~li~~~N---~-~~~~~i~~sT~~~Yf~a~~~~~~~~p~~-~gDf~py~ 349 (990)
..+.++++|+|+|+| ...+..++++++++| + ...+++++||+++||++++++ .++|++ +|||+||+
T Consensus 205 ~~~~~~~~l~~~G~d------~~~~~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 205 KKYYTNNILIPYGDD------DDGGPPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CCSSSSEEEEEEEEE------HHHHHHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred HhcCCCceEEEeecC------CCCCCcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 999999999999998 222345555555555 4 368999999999999999998 999999 99999996
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=486.27 Aligned_cols=705 Identities=19% Similarity=0.216 Sum_probs=498.2
Q ss_pred eEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHHHHHHHHH
Q 001963 36 INVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQL 115 (990)
Q Consensus 36 ~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~l 115 (990)
.+|+.+.|+|.|..|+|.+++.. ++......+++..|...|.++|+.. +...+.|..+..|+..++ ++
T Consensus 198 ~~I~~~ghahid~aWlw~l~et~---------r~a~ts~~~~~~l~D~~p~~~~~~s-~~~~y~~l~~d~p~l~~~--~~ 265 (943)
T COG0383 198 NEIPAVGHAHIDTAWLWPLDETE---------RKASTSFSLVMNLMDHYPVQKFVQS-AAALYNWLKPDVPFLFSR--PA 265 (943)
T ss_pred ccccccchhhHHHHHhccHHHHH---------HHHhhhhhheecccccChhhhhhhh-HHHHHHHhcCccHHHhhc--cc
Confidence 34999999999999999999987 5788889999999999999999975 556679999999999999 99
Q ss_pred HHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEeecCH
Q 001963 116 VNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDY 195 (990)
Q Consensus 116 V~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~Ri~~ 195 (990)
|+.|+|+.+||+||.+|.++++||+++||+.+|++|+..+||...++.|.||+||.|+++|||+ ..+|+++|+++++.|
T Consensus 266 v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klaw 344 (943)
T COG0383 266 VEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAW 344 (943)
T ss_pred ccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHH-Hhhcchhhhccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCccccCCCCCCccCCccccCCChHHHHHHHHHHHHHH
Q 001963 196 QDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQ 275 (990)
Q Consensus 196 ~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~f~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~ 275 (990)
++.+.++++. |.|++.+ |+++++|..+.+++. |. ..+ . ..++..
T Consensus 345 n~tn~~Ph~~---~~w~~~d----g~e~~~hds~~~~~~-------d~------------------v~~--~--~~~r~~ 388 (943)
T COG0383 345 NDTNRFPHDL---LRWRWKD----GTENLAHDSICGCSS-------DP------------------VHR--E--MEYRFE 388 (943)
T ss_pred hhccCCChhH---heeeccc----ccccceeecCCCCcc-------cH------------------HHH--H--HHhhhh
Confidence 9999998865 9999999 999999975533321 10 000 0 111111
Q ss_pred hhhcCCCeEEEeecC-CCCCcchHHHHHHHHHHHHHHhcCCCeeEEeCChhhHHHHH----HhcCCCCCcccCCC-cccc
Q 001963 276 ANITRTNHIMWTMGT-DFKYQYAHTWFRQMDKFIHYVNQDGRVNALYSTPSMYIDAK----YAANESWPLKTDDF-FPYA 349 (990)
Q Consensus 276 ~~~~~~~~il~~~G~-Df~y~~a~~~~~~~~~li~~~N~~~~~~i~~sT~~~Yf~a~----~~~~~~~p~~~gDf-~py~ 349 (990)
. .....++.+|. |+..+.+.++-.+.. -..+..+|... .......|++.|++ +.+|
T Consensus 389 ~---~~~~~~~~~g~gd~ggg~~~dm~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~h 450 (943)
T COG0383 389 K---INQVGLYLYGYGDGGGGPSIDMLENPE---------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLELH 450 (943)
T ss_pred h---hccceeEEeeccCCCCCCCHHHHhccc---------------cccccceeeecceeeeeecccccccchhhhhhcc
Confidence 1 23344555553 444443322111111 12222333222 12245688998884 5887
Q ss_pred ccCCCceeeeeecccchhhHHHHhhHHHHHHHHHHhhcc------cccCCCchHHHHHHHHhhhccccccCcccccchH-
Q 001963 350 DRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKG------RNEVGLSTDSLADALALVQHHDAVSGTEKQHVAD- 422 (990)
Q Consensus 350 ~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~~------~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~- 422 (990)
+ |+|||....|+++|.+|..|+.+|.+.+++. ..++...++++|+.++++|+||.++|++...|+.
T Consensus 451 r-------g~~t~~~~~k~~~r~~e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~ 523 (943)
T COG0383 451 R-------GTYTTQAKTKKLNRESEFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSY 523 (943)
T ss_pred C-------ceeehhhhhhhhccccccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechh
Confidence 6 9999999999999999999999998887742 3466778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccccCcccccCCCCccccCCCCcEEEEEEcCCCceeeEEEE
Q 001963 423 DYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIR 502 (990)
Q Consensus 423 dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~n~s~~~~~~~~~~~~~~~~v~vfNpl~~~r~~~V~ 502 (990)
+....+......+..++..+++.|.+. ......++|++.|.+.
T Consensus 524 ~a~~~~~~~~~~~~~i~~~~~~~l~~~---------------------------------~~e~~~~~~~~~~~~~---- 566 (943)
T COG0383 524 DALPLLEVVQKGASKIAELALKVLSSQ---------------------------------CLENLFVKNTLSWNGI---- 566 (943)
T ss_pred hHHHHHHhhhccchhhhhhhhhhhhhc---------------------------------cccceEEEeeccCCcc----
Confidence 888888888888888888888877432 1225779999999981
Q ss_pred EEEcCceEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEeecCCCceEEEEEEecCcccCccc
Q 001963 503 IPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSG 582 (990)
Q Consensus 503 i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~~~~~~~ 582 (990)
.+.|.|..+..++.+.+. ...++|++|...++++......
T Consensus 567 ------~~~v~d~~~~~~~~~~~~------------------------------~~ed~~~~g~~~i~~~~~~~~~---- 606 (943)
T COG0383 567 ------SLQVLDKTSGGIYTSQLT------------------------------ALEDVGDIGNEYIYSQPTKTEP---- 606 (943)
T ss_pred ------eEEEEEcCCCceehhhhh------------------------------hhhhcCCcccceeEeccccccc----
Confidence 456666655444433221 0136888998888873322211
Q ss_pred cceeeeccccCCCceEEcCCeEEEEEeCCCC-eEEEEEecCCCcEEEEEEEEEEeeccCCCC---------CCeeeEEEE
Q 001963 583 MRTVYKSQIRQNDTIEVGPGNLKLLYSGKRA-KLMRYINSKTSVNKLLEQSYIYYRGDDGSK---------DLQLSFTIL 652 (990)
Q Consensus 583 ~~~~~~~~~~~~~~~~ieN~~~~l~~~~~~G-~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~---------~~~~~i~v~ 652 (990)
.....++...++.++ ++| .+. .+.....++++|+.+. .....-.++
T Consensus 607 ------------~~~~~~~~~~~~~~~-~~gn~~~-----------~~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~ 662 (943)
T COG0383 607 ------------ETVIEEKEWKRLIIN-DTGNQLA-----------LIEDEPAYWDAWNIDKFLEEELLALTALPEEAIE 662 (943)
T ss_pred ------------cccccccchheeecc-CCCccee-----------eeecccceechhcchhhhhhhhhhhhccccchhc
Confidence 122334444555554 666 333 2333455666666552 111222378
Q ss_pred eCCceEEEEEEe---cCeEEEEEEEecCCCceEEEEEeCcccccCCCCcEEEEEEEeeccCCCeEEEcCCCccceeeccc
Q 001963 653 RGPLLDEVHQRI---NPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRD 729 (990)
Q Consensus 653 ~Gpl~~~v~~~~---~~~i~~~vrLy~~~~~ie~e~~V~~i~~~~~~~~e~~~~f~t~I~s~~~fYTDsNG~~~ikR~~~ 729 (990)
+||+..++++.. .+.+++.|++|+++++|+|++.|++. ..+|.+++.|+++++++. .+.+..|+.++|+++
T Consensus 663 ~~~~~~~~~~~~~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~--a~~d~~fg~v~Rp~~ 736 (943)
T COG0383 663 NGPLVRTVRVSKELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDF--ATADIPFGVVERPTH 736 (943)
T ss_pred cccceeeeeeeeeccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccc--eeccccceeeccCCC
Confidence 999999988765 46788999999999999999999754 468999999999999864 444699999999999
Q ss_pred cccCcccccccccccceEeccceeeEEecCcc--eEEEecccccccccCCCeEEEEEEEEe-------eccCCcCccccc
Q 001963 730 YRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSE--LSILVDRSVGGSSIADGQLELMLHRRL-------VADDNRGVSEAL 800 (990)
Q Consensus 730 ~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~--ltvl~Drs~G~sSl~~G~iElmL~Rr~-------~~DD~rGv~e~l 800 (990)
..+.|+....+ -|+..++.+.|...+ +++++|++||++ ..++.|.|+|.|.. .++|.
T Consensus 737 ~~~~W~~a~~e------~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~~gd~~~~P~p------- 802 (943)
T COG0383 737 PNTSWENARFE------VPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGELGDWGYRPDP------- 802 (943)
T ss_pred CchhhhcccCc------chhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEecccccccccccccCCc-------
Confidence 99899865333 357799999999999 788999999996 59999999999998 44444
Q ss_pred cccccccccccCeEEeeEEEEEecCccchhhhcccchhhhccCceeeecccCCCccccccccccc---cCccccCCCCcc
Q 001963 801 NETVCVFDKCEGLTIIGKYYLRIDPVGEAAKWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYS---AMDTTYVLPDNV 877 (990)
Q Consensus 801 ~e~~~~~~~~~gl~~~~~~~l~l~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~lp~nv 877 (990)
+.+ |.|. .+.+|.+...............++.++.|........+.. .......++ ++. ..-|+++
T Consensus 803 -~Ad-----~~g~-h~~~y~ly~h~~~~~~~~~~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~ 871 (943)
T COG0383 803 -EAD-----CLGE-HEFTYALYPHQGSFLSAPTAVRAYELNVPVRTVQVEEDGV--EGTLEATLDLLEPLL--LVGPDNL 871 (943)
T ss_pred -hhh-----hccc-eeEEEEEEEccccccccchhhhhhhccCceEEeecccccc--cccchhccccccccc--cCCCcce
Confidence 222 2231 3334444433211111111123344556665544322110 000011111 111 1458899
Q ss_pred eEEEeeecCCC-cEEEEEeccccccccCCCcceeeeeccccCCcCccce-EEeccccccchhhHhhhcceeeeecCCCCC
Q 001963 878 ALITLQELDSG-KILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISK-VTEMNLSANQERAVMEKKRLVWRVEGSSKE 955 (990)
Q Consensus 878 hlltl~~~~~~-~illRl~~l~~~~~~~~~s~~~~v~l~~lf~~~~~~~-i~EtsLt~~~~~~~~~~~r~~w~~~~~~~~ 955 (990)
.|-.+|+..++ .++||+.+...... . + -+.+ .+.+.. ++||.|-.+ +.
T Consensus 872 ~lsA~K~aed~~~~IlR~yn~~~~~~-~--~-~~~~-------~l~~~~~~~~~~llE~----~~--------------- 921 (943)
T COG0383 872 ILSALKRAEDGDGLILRLYNPSGTKT-L--A-LIEL-------SLPVVNAIRETNLLEN----EN--------------- 921 (943)
T ss_pred EEEeeeecccCCceEEEEeccCCCCc-c--e-eeec-------cchhhhhhhhhhhhcc----cc---------------
Confidence 99999999876 69999776543222 1 0 1111 234444 777777755 00
Q ss_pred CCcccCCCCCCCCCceEEecCcceeEEEEE
Q 001963 956 QPTAVRGSPVDPAKLVVELAPMEIRTFVIE 985 (990)
Q Consensus 956 ~~~~~~~~~~~~~~~~i~l~PmeIrTf~i~ 985 (990)
++..+. .|+.+|.||.||++.
T Consensus 922 --------~~~~~~-~i~~~~~ei~t~k~~ 942 (943)
T COG0383 922 --------ELETNS-PITPKPVEIVTLKLE 942 (943)
T ss_pred --------ccccCC-cccccceEEEEEEee
Confidence 000111 577889999999986
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.2e-43 Score=418.90 Aligned_cols=410 Identities=28% Similarity=0.422 Sum_probs=283.9
Q ss_pred EEEEEEcCCCceeeEEEEEEEcCceEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEeecCCC
Q 001963 485 LVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPL 564 (990)
Q Consensus 485 ~~v~vfNpl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~l 564 (990)
++|+|||||+|+|+++|+|+++.+.+.+.|..|++|++|+++... ....++|.|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 579999999999999999999999999999999999999998221 1245789998999999
Q ss_pred ceEEEEEEecCcccCccccceeeeccccCCCceEEcCCeEEEEEeCCCCeEEEEEecCCCcEEE--EEEEEEEeeccCCC
Q 001963 565 GFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKL--LEQSYIYYRGDDGS 642 (990)
Q Consensus 565 G~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~~~l~~~~~~G~l~si~dk~~g~~~~--~~~~f~~Y~~~~g~ 642 (990)
||++|.|...+........ .. ....+...|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|..-.++
T Consensus 62 Gy~~~~i~~~~~~~~~~~~-~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEA-SI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeeccccccccccc-ee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 9999999987764332100 00 01113478999999999996669999999999999999 88899999664443
Q ss_pred CC-------CeeeEE-EEeCCceEEEEEEe------------------cCeEEEEEEEecCCCceEEEEEeCcccccCCC
Q 001963 643 KD-------LQLSFT-ILRGPLLDEVHQRI------------------NPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGI 696 (990)
Q Consensus 643 ~~-------~~~~i~-v~~Gpl~~~v~~~~------------------~~~i~~~vrLy~~~~~ie~e~~V~~i~~~~~~ 696 (990)
+. ....+. +.+||+...+++.+ .+.++++++||+++++|||++.|+|.+. .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~---~ 213 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE---D 213 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT---S
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc---C
Confidence 21 122333 46799998866543 2468899999999999999999986542 2
Q ss_pred Cc-EEEEEEEeeccCCCeEEEcCCCccceeeccccccCcccccccccccceEeccceeeEEecCcceEEEeccccccccc
Q 001963 697 GK-EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSI 775 (990)
Q Consensus 697 ~~-e~~~~f~t~I~s~~~fYTDsNG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvl~Drs~G~sSl 775 (990)
.+ +++++|+|+|.++..||+|.+|+.+.+|+++. +.|.++|||||.+.++|.|.+.+|+|+||+++|++++
T Consensus 214 ~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~~--------~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~~ 285 (457)
T PF07748_consen 214 HRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTHP--------NTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYESL 285 (457)
T ss_dssp CEEEEEEEEEES-S-TCEEEEESTTEEEEECESST--------TTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEEC
T ss_pred CceeEEEEeecCCCCCCEEEECCCCeEEecCCccc--------cCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEec
Confidence 33 69999999999999999887766654445432 3678899999999999999998899999999999988
Q ss_pred C-CCeEEEEEEEEeeccCCcCccccccccccccccccCeEEeeEEEEEecCccchhhhcccchhhhccCceeeecccCCC
Q 001963 776 A-DGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAAKWRRSFGQEIYSPFLLAFTEQDGD 854 (990)
Q Consensus 776 ~-~G~iElmL~Rr~~~DD~rGv~e~l~e~~~~~~~~~gl~~~~~~~l~l~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~~ 854 (990)
. +|+|+||||||+.+||++|+++ |.|.+...........+.+..+++|++++.....
T Consensus 286 ~~~g~l~ltL~R~~~~D~g~~~~~--------------------~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~~-- 343 (457)
T PF07748_consen 286 DQDGELELTLLRRPSQDDGRGVFR--------------------YALYPHSGSWDEADVVQEAYELNQPLIVFNSSNI-- 343 (457)
T ss_dssp TTTTEEEEEEEEEBSCG-SSSEEC--------------------CEEEEEEEEEEEEECHHCHHHHTS-EEEESS--T--
T ss_pred cCCCeEEEEEeecccccCCccEEE--------------------EEEEEeccccccccchhhhhhccCccEEeecccc--
Confidence 7 9999999999999999999762 3333322211110012355688999987622111
Q ss_pred ccccccccccccCcc-ccCCCCcceEEEe-----eecCCC-----cEEEEEeccccccccCC---Ccce---eeeecccc
Q 001963 855 HWANSHLATYSAMDT-TYVLPDNVALITL-----QELDSG-----KILLRLAHLYEIEEDTD---LSVM---SSVELKKV 917 (990)
Q Consensus 855 ~~~~~~~~~~~~l~~-~~~lp~nvhlltl-----~~~~~~-----~illRl~~l~~~~~~~~---~s~~---~~v~l~~l 917 (990)
.......++++.. ...+|+++|+.+| |+.+++ .++||+.+......... .+.+ +++++.++
T Consensus 344 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l 421 (457)
T PF07748_consen 344 --QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLVNL 421 (457)
T ss_dssp --TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEEST
T ss_pred --ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEeccc
Confidence 1111223333321 1247888887776 666555 68888765444432222 1334 78888899
Q ss_pred CCcCccceEEeccccccchhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEE
Q 001963 918 FPKKKISKVTEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFV 983 (990)
Q Consensus 918 f~~~~~~~i~EtsLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~i~l~PmeIrTf~ 983 (990)
|....+..+.||++++... .+...|+|+|||||||+
T Consensus 422 le~~~~~~i~e~s~~~~~~------------------------------~~~~~~~l~P~EIkT~r 457 (457)
T PF07748_consen 422 LEEPDIEEIEETSLSDPSE------------------------------SNSVELTLKPFEIKTFR 457 (457)
T ss_dssp TSSSCEEEEEEE-SEEEES------------------------------CGGTCSEE-TTEEEEEE
T ss_pred ccCCCccceEeeccCCCCC------------------------------CCEeEEEEeCcEEEEEC
Confidence 9988888999999553211 11346889999999996
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.83 E-value=1.6e-21 Score=170.46 Aligned_cols=75 Identities=39% Similarity=0.541 Sum_probs=65.4
Q ss_pred CceeeeeecccchhhHHHHhhHHHHHHHHHHhhcccc-----cCCCchHHHHHHHHhhhccccccCcccccchHHHHHHH
Q 001963 354 AYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGRN-----EVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRL 428 (990)
Q Consensus 354 ~yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~~~~-----~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 428 (990)
+||+|||||||.+|+++|++|++|+.||.+.+++... ++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 4899999999999999999999999999999986433 45567899999999999999999999999999999986
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.79 E-value=4.5e-20 Score=160.80 Aligned_cols=74 Identities=39% Similarity=0.525 Sum_probs=68.2
Q ss_pred ceeeeeecccchhhHHHHhhHHHHHHHHHHhhc-----ccccCCCchHHHHHHHHhhhccccccCcccccchHHHHHHH
Q 001963 355 YWTGYFTSRPALKGYVRTMSAYYLAARQLEFFK-----GRNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRL 428 (990)
Q Consensus 355 yWtG~yTSr~~~K~~~R~~e~~L~~ae~l~~l~-----~~~~~~~~~~~l~~~l~~~QhHDaItGTs~~~V~~dy~~rl 428 (990)
||+|||||||.+|+++|++|++|+.+|.+.+++ +..++...++.+|+.|+++||||+||||++++|++||.+|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 799999999999999999999999999999885 34566778999999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.3e-20 Score=230.31 Aligned_cols=358 Identities=16% Similarity=0.108 Sum_probs=257.7
Q ss_pred CeeEEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHH
Q 001963 34 GKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVV 112 (990)
Q Consensus 34 ~~~~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~v 112 (990)
.++.+|+++|+|||++|+.+.+.+.. .+...++.+++.++++|. ..|..+++....+.+....|+.++++
T Consensus 2 ~~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~ 72 (943)
T COG0383 2 LKKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRV 72 (943)
T ss_pred CccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhH
Confidence 35667999999999999999999875 445559999999999994 55999999988888888999999999
Q ss_pred HHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEee
Q 001963 113 KQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFAR 192 (990)
Q Consensus 113 k~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~R 192 (990)
+.+++.|++ .+|.++.+.|.+.+++|+.+|++++|..+ ...+|..++.||.+|.||+..+.|+++ ..+||+.+.|+|
T Consensus 73 ~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~-~~~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~r 149 (943)
T COG0383 73 KLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFD-AERFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFGR 149 (943)
T ss_pred HHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHH-HHHhhhhhccccccccchhhhhhhHHH-HhcCCchhhccc
Confidence 999999999 57999999999999999999999999986 566779999999999999999999999 899999999999
Q ss_pred cCHHH------HH---HhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCccccCCCCCCccCCccccCCChHH
Q 001963 193 IDYQD------RA---KRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPE 263 (990)
Q Consensus 193 i~~~~------k~---~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~f~~~~~~~p~~~~~~~~~~nv~~ 263 (990)
+.... -. ......-.+..|.+++ +++++.+.++..|..+ ... +... . .-++-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g-~~I-~~~g-h------------ahid~ 210 (943)
T COG0383 150 GAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNG-NEI-PAVG-H------------AHIDT 210 (943)
T ss_pred ccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhcc-ccc-cccc-h------------hhHHH
Confidence 64311 10 1112334467898888 7888888888888866 210 0000 0 00111
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEeecCCCCCcchHHHHHHHHHHHHHHhcC-CCeeEEeCC----hhhHHHHHHhc-CCC
Q 001963 264 RVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQD-GRVNALYST----PSMYIDAKYAA-NES 337 (990)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~il~~~G~Df~y~~a~~~~~~~~~li~~~N~~-~~~~i~~sT----~~~Yf~a~~~~-~~~ 337 (990)
.+..-++..++. ..+..++++.|+|..+.. .++...+.+.|.- ......|+- ...|+...... ...
T Consensus 211 aWlw~l~et~r~---a~ts~~~~~~l~D~~p~~-----~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d 282 (943)
T COG0383 211 AWLWPLDETERK---ASTSFSLVMNLMDHYPVQ-----KFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEED 282 (943)
T ss_pred HHhccHHHHHHH---HhhhhhheecccccChhh-----hhhhhHHHHHHHhcCccHHHhhcccccccceEEeeccccccc
Confidence 111222333333 366778899999987765 5666667777632 233333444 33444333221 134
Q ss_pred CCcccCCCc-cccccCCCcee--eeeecccchhhHHHHhhHHHH-HHHHHHh-------hc---ccccCCCchHHHHHHH
Q 001963 338 WPLKTDDFF-PYADRENAYWT--GYFTSRPALKGYVRTMSAYYL-AARQLEF-------FK---GRNEVGLSTDSLADAL 403 (990)
Q Consensus 338 ~p~~~gDf~-py~~~~~~yWt--G~yTSr~~~K~~~R~~e~~L~-~ae~l~~-------l~---~~~~~~~~~~~l~~~l 403 (990)
.++.+||+. .-..+-..|.+ ..-+||..+|..+-..+..|- .++.+.. ++ +..+|...+.-.|+..
T Consensus 283 ~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg 362 (943)
T COG0383 283 LNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDG 362 (943)
T ss_pred CCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccc
Confidence 678899986 22222122221 446899999998877777763 2233222 11 2345666677789999
Q ss_pred HhhhccccccCcccccchHHHHHHHHH
Q 001963 404 ALVQHHDAVSGTEKQHVADDYAKRLSI 430 (990)
Q Consensus 404 ~~~QhHDaItGTs~~~V~~dy~~rl~~ 430 (990)
+.++.||++|||+.+.|+.+...|...
T Consensus 363 ~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 363 TENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred cccceeecCCCCcccHHHHHHHhhhhh
Confidence 999999999999999999999888765
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.29 E-value=2.4e-06 Score=97.48 Aligned_cols=121 Identities=19% Similarity=0.229 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHH-----------------------------------------
Q 001963 70 VQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEV----------------------------------------- 108 (990)
Q Consensus 70 v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~----------------------------------------- 108 (990)
..+.+--++..|++.|+.|++.+=...+.+++.+..+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 344555677777777777876664455668887777777
Q ss_pred -----HHHHHHHHHCCCEEEEcceeeecccCCCCH-HHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhh
Q 001963 109 -----QNVVKQLVNSGQLELINGGMCMHDEAAPHY-IDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAE 182 (990)
Q Consensus 109 -----~~~vk~lV~~Grle~vgGgwv~~Dea~~~~-es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~ 182 (990)
-+.+|+|+++|++|+++++|..+=-.+..- +++..|+..|...+++.||++|+..|.|. .+.+..+..++ ++
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AE 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HH
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HH
Confidence 899999999999999999998887777777 99999999999999999999999999997 48888999999 89
Q ss_pred cCCcEEEEee
Q 001963 183 VGFDFLFFAR 192 (990)
Q Consensus 183 ~G~~~~~~~R 192 (990)
+||+++++.-
T Consensus 186 ~Gi~~~i~d~ 195 (360)
T PF03065_consen 186 AGIRYTILDG 195 (360)
T ss_dssp TT--EEEEEC
T ss_pred cCCEEEEECc
Confidence 9999999864
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.011 Score=66.55 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhCCCCe----------EEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCC-C
Q 001963 69 CVQNVLDSLIPALVADKNRK----------FIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAP-H 137 (990)
Q Consensus 69 ~v~~il~~vi~~L~~~p~~k----------F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~-~ 137 (990)
+..+-++..++.+++...|. |..-+-.-....|+..+...-+.||++.++|.+|+++.+.+-.---+- .
T Consensus 76 ry~~~Le~~~el~e~e~~R~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~ 155 (504)
T COG1543 76 RYLRYLEWKIELSEKEEKRYADQSLRELAEFYIPEFLNARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGG 155 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCC
Confidence 44455666666665543321 222222223567888899999999999999999999887654332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCCcEEEEe
Q 001963 138 YIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFA 191 (990)
Q Consensus 138 ~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~~~~~~~ 191 (990)
.|++=-|+..|.+-..++||..|+--|.| --++...++.+| +.+||++++.-
T Consensus 156 peAi~AQi~~g~~~ye~~fg~~P~GiWlP-Ecay~pgie~~l-~~~Gi~yf~vd 207 (504)
T COG1543 156 PEAIEAQILTGIELYEEHFGLAPKGIWLP-ECAYAPGIERIL-KDAGIEYFFVD 207 (504)
T ss_pred chhhHHHHHHHHHHHHHHhCCCCCceech-hhccccchHHHH-HhcCceEEEec
Confidence 48888999999998889999999999999 568999999999 89999999976
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.04 E-value=0.22 Score=46.97 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHH
Q 001963 71 QNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGH 149 (990)
Q Consensus 71 ~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~ 149 (990)
......+++.|+++.- ..|-.... +.. +..+.+++++++| +||.+-||.-++-...+.+.+.+++..+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~-~~~--------~~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~ 86 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS-WVE--------RYPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSR 86 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH-HHH--------HHHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceeeeeccc-ccc--------cccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHH
Confidence 3556778888888753 33433322 222 2278899999999 99999999988888889999999999999
Q ss_pred HHHHHHcCCCCcceeecCCCCC-chhhHHHHHhhcCCcE
Q 001963 150 RYIKEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDF 187 (990)
Q Consensus 150 ~~l~~~fG~~p~v~w~~D~FGh-s~~~p~ll~~~~G~~~ 187 (990)
++|++.+|..|+. -.=|||. +...-+++ +++||++
T Consensus 87 ~~l~~~~g~~~~~--f~~P~g~~~~~~~~~l-~~~G~~y 122 (123)
T PF01522_consen 87 EILEEITGRPPKG--FRYPFGSYDDNTLQAL-REAGYKY 122 (123)
T ss_dssp HHHHHHHSSEESE--EE-GGGEECHHHHHHH-HHTT-EE
T ss_pred HHHHHHhCCCCcE--EECCCCCCCHHHHHHH-HHcCCCc
Confidence 9999999994443 4457886 67778999 8999987
No 15
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=93.07 E-value=6.6 Score=47.90 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=78.2
Q ss_pred EEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCC----CHHHHHHHHHHHHHHHHHHcCCCCccee
Q 001963 89 FIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAP----HYIDMIDQTTLGHRYIKEQFNVTPRIGW 164 (990)
Q Consensus 89 F~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~----~~es~i~ql~~G~~~l~~~fG~~p~v~w 164 (990)
|++++..-+..+-....+..-+.+|++++.|+.|++.-.|--+=-.+. -++++++|+..+....++-||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 888774455566666678899999999999999999877743322222 4569999999999999999999999999
Q ss_pred ecCCCCCchhhHHHHHhhcCCcE
Q 001963 165 QIDPFGHSAVQAYLLSAEVGFDF 187 (990)
Q Consensus 165 ~~D~FGhs~~~p~ll~~~~G~~~ 187 (990)
.+- +=.+.++..++ +++|+..
T Consensus 242 ~tE-l~y~~~i~~~~-~e~G~~~ 262 (615)
T COG1449 242 NTE-LAYNDQILEYF-EESGFSW 262 (615)
T ss_pred Chh-hhccHHHHHHH-HHcCCcc
Confidence 864 56788899999 8999995
No 16
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=92.18 E-value=1.3 Score=45.54 Aligned_cols=101 Identities=14% Similarity=0.251 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHH
Q 001963 75 DSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIK 153 (990)
Q Consensus 75 ~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~ 153 (990)
..+++.|+++.- .+|-..+. | .+..| +.+++++++|- ||-+-+|.-++-...+.+.+.+++..+.+.|+
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~-----~-~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS-----W-AERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH-----H-HHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 456777877753 34444432 2 22344 57899999995 89999999888777889999999999999999
Q ss_pred HHcCCCCcceeecCCCCC-chhhHHHHHhhcCCcEE
Q 001963 154 EQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDFL 188 (990)
Q Consensus 154 ~~fG~~p~v~w~~D~FGh-s~~~p~ll~~~~G~~~~ 188 (990)
+..|..|+ |--=|+|. +..+..++ ++.|+..+
T Consensus 92 ~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 92 KLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 99998876 45567775 67778888 89999854
No 17
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=91.92 E-value=1.2 Score=47.13 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=76.9
Q ss_pred HHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHHHH
Q 001963 76 SLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKE 154 (990)
Q Consensus 76 ~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l~~ 154 (990)
.+++.|+++-- ..|-..+. |. +..| +.+|+++++|- ||-+-+|.-++-...+.+.+.+++....+.|++
T Consensus 54 ~lL~~L~~~~vkATFFv~G~-----~~-~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~ 123 (224)
T TIGR02884 54 KILDVLKEKKVPAAFFVTGH-----YI-KTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKK 123 (224)
T ss_pred HHHHHHHHcCCCeEEEeech-----hh-HHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHHH
Confidence 46778877753 34544442 22 3334 67899999995 688889988777778899999999999999999
Q ss_pred HcCCCCcceeecCCCCC-chhhHHHHHhhcCCcEEE
Q 001963 155 QFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDFLF 189 (990)
Q Consensus 155 ~fG~~p~v~w~~D~FGh-s~~~p~ll~~~~G~~~~~ 189 (990)
..|..+ ..|.-=|+|. +..+..++ +++|+..++
T Consensus 124 ~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~v~ 157 (224)
T TIGR02884 124 VTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYTVF 157 (224)
T ss_pred HhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcEEe
Confidence 888762 3367778994 77888999 899998643
No 18
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=91.24 E-value=19 Score=39.92 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHH
Q 001963 71 QNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGH 149 (990)
Q Consensus 71 ~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~ 149 (990)
+.=+-.+++.|+++-- .+|-... |+.+.+|+ .+|+++++| .||.+=||...+-..-+.+...++|..+.
T Consensus 76 rvG~~RiLdlL~~~gv~aTffv~g------~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~ 145 (297)
T TIGR03212 76 RAGFWRLLRLFTERGIPVTVFGVA------MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAI 145 (297)
T ss_pred hhCHHHHHHHHHHcCCCEEEEeEH------HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHH
Confidence 4445667888888754 3455443 34455665 567777888 89999999877766678889999999999
Q ss_pred HHHHHHcCCCCcceeecCCCCCchhhHHHHHhh-cCCcEEEEeec
Q 001963 150 RYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAE-VGFDFLFFARI 193 (990)
Q Consensus 150 ~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~-~G~~~~~~~Ri 193 (990)
+-|++..|.+| .||.. -.+|..++.|+ ++ .||.+..-+..
T Consensus 146 ~~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~ 186 (297)
T TIGR03212 146 RLHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYDADSYA 186 (297)
T ss_pred HHHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEeCchhh
Confidence 98888788765 56753 36799999999 88 99998765443
No 19
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=90.52 E-value=2.3 Score=46.30 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHH
Q 001963 68 ACVQNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTT 146 (990)
Q Consensus 68 ~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~ 146 (990)
.+|...+..+++.|+++-- .+|-..+ |+.+..| +.+|+++++| .||.+=||.-.+-...+.+.+..++.
T Consensus 24 ~rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~ 93 (265)
T TIGR03006 24 CRVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIR 93 (265)
T ss_pred chHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHH
Confidence 3667778889999998754 4454443 3344455 4599999999 69999999877666678899999999
Q ss_pred HHHHHHHHHcCCCCcceeecCCCCCc---hhhHHHHHhhcCCcEEEE
Q 001963 147 LGHRYIKEQFNVTPRIGWQIDPFGHS---AVQAYLLSAEVGFDFLFF 190 (990)
Q Consensus 147 ~G~~~l~~~fG~~p~v~w~~D~FGhs---~~~p~ll~~~~G~~~~~~ 190 (990)
...+.|++..|..|+ ||-.=.+..+ .....++ +++||.+..-
T Consensus 94 ~s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS 138 (265)
T TIGR03006 94 RSKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSS 138 (265)
T ss_pred HHHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEe
Confidence 999999888888776 5543333333 3346899 8999998653
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=88.46 E-value=4.7 Score=43.95 Aligned_cols=101 Identities=21% Similarity=0.348 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEcceeeecccCCCCHHHHHHHHHHHHHHH
Q 001963 74 LDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYI 152 (990)
Q Consensus 74 l~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgwv~~Dea~~~~es~i~ql~~G~~~l 152 (990)
...+++.|+++-- .+|-..+. |. +.+| +.+|+++++|- ||-+=+|.-++....+.+.+.+++..+.+.|
T Consensus 100 t~~iL~iLkk~~vkATFFv~G~-----~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEGK-----WV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeehH-----hh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 3467788887754 44555542 22 3344 45788899995 7889999888888888999999999999999
Q ss_pred HHHcCCCCcceeecCCCCC-chhhHHHHHhhcCCcE
Q 001963 153 KEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDF 187 (990)
Q Consensus 153 ~~~fG~~p~v~w~~D~FGh-s~~~p~ll~~~~G~~~ 187 (990)
++..|..|+ |.-=|+|. +..+..++ +++|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 999999877 66678987 57788888 8999864
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=84.20 E-value=28 Score=42.89 Aligned_cols=151 Identities=17% Similarity=0.284 Sum_probs=96.0
Q ss_pred HHHHHHHHCCCEEEEcceeeecccC--------------------CCCHH-------HHHHHHHHHHHHHHHHcCCCCcc
Q 001963 110 NVVKQLVNSGQLELINGGMCMHDEA--------------------APHYI-------DMIDQTTLGHRYIKEQFNVTPRI 162 (990)
Q Consensus 110 ~~vk~lV~~Grle~vgGgwv~~Dea--------------------~~~~e-------s~i~ql~~G~~~l~~~fG~~p~v 162 (990)
+++|+++++|-+||-+=+|..|.-. ...|| .+.+.+..+.+.|++..|..|++
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~ 247 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV 247 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 6899999999999977777645311 01222 25678899999999999998874
Q ss_pred eeecCCCCC-chhhHHHHHhhcCCcEEEEeecCHHHHHHhhhcCceeEEEeeCCCCCCCCceeEeeCCCCCCCCCCCCcc
Q 001963 163 GWQIDPFGH-SAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYF 241 (990)
Q Consensus 163 ~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~d~~~~~s~i~t~~~~~~Y~~p~~~f~f 241 (990)
..=|||+ +.....+. +++||+..+..+-... . .+. -|..| . +..
T Consensus 248 --FayPyG~~n~~~~~ia-keaGY~~afT~~~G~~---------------~-------~~~--------~~~Lp-R-i~I 292 (671)
T PRK14582 248 --WVWPYGEANGIALEEL-KKLGYDMAFTLESGLA---------------N-------ASQ--------LDSIP-R-VLI 292 (671)
T ss_pred --EecCCCCCCHHHHHHH-HHCCCeEEEEeCCCCC---------------C-------CCC--------cCccc-e-EEe
Confidence 5568985 66788898 8999998876542210 0 000 01111 0 000
Q ss_pred ccCCCCCCccCCccccCCChHHHHHHHHHHHHHHhhhcCCCeEEEeecCCCCC-cchHHHHHHHHHHHHHHhcCC
Q 001963 242 EVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKY-QYAHTWFRQMDKFIHYVNQDG 315 (990)
Q Consensus 242 ~~~~~~~p~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~il~~~G~Df~y-~~a~~~~~~~~~li~~~N~~~ 315 (990)
. .++ . ++.|...+... ......+++-.+-|+-| .++..+-++++.+|+.+.+.+
T Consensus 293 ~---------~~~-----s----l~~f~~~v~~~--~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 293 A---------NNP-----S----LKEFAQQIITV--QEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred c---------CCC-----C----HHHHHHHHhcc--cCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 0 011 1 23455544432 12555677777888888 566667789999999988654
No 22
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=80.86 E-value=9.1 Score=46.95 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCEEEEcceeeeccc--------------------CCCCHHH-------HHHHHHHHHHHHHHHcCCCCc
Q 001963 109 QNVVKQLVNSGQLELINGGMCMHDE--------------------AAPHYID-------MIDQTTLGHRYIKEQFNVTPR 161 (990)
Q Consensus 109 ~~~vk~lV~~Grle~vgGgwv~~De--------------------a~~~~es-------~i~ql~~G~~~l~~~fG~~p~ 161 (990)
.++||+++++|-+||-+=+|..+.- ....+|+ +-+.+....+.|++..|..|+
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~ 246 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPR 246 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3689999999999998888876631 1122332 556678888989999999887
Q ss_pred ceeecCCCCC-chhhHHHHHhhcCCcEEEEee
Q 001963 162 IGWQIDPFGH-SAVQAYLLSAEVGFDFLFFAR 192 (990)
Q Consensus 162 v~w~~D~FGh-s~~~p~ll~~~~G~~~~~~~R 192 (990)
. ..=|||+ +.....++ +++||+..+..+
T Consensus 247 ~--FayPyG~yn~~~~~ia-k~aGy~~afTt~ 275 (672)
T PRK14581 247 V--WVWPYGAPNGTVLNIL-RQHGYQLAMTLD 275 (672)
T ss_pred E--EEcCCCCcCHHHHHHH-HHCCCcEEEECC
Confidence 4 4568995 77888999 899999888654
No 23
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=64.38 E-value=2.3e+02 Score=31.35 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHHHHHHCCCEEEEcceeeec----ccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCCchhhHHHHHhhcCC
Q 001963 110 NVVKQLVNSGQLELINGGMCMH----DEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGF 185 (990)
Q Consensus 110 ~~vk~lV~~Grle~vgGgwv~~----Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGhs~~~p~ll~~~~G~ 185 (990)
+.+|+.+++ -|+.+=||.-. ....-+.+.+.++|..+.+-|++..|..|+ ||-+=.+-.+..+..++ +++||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHH-HHcCC
Confidence 457777777 99988888644 234457788999999999989888888764 45554445678889999 89999
Q ss_pred cEEEEeec
Q 001963 186 DFLFFARI 193 (990)
Q Consensus 186 ~~~~~~Ri 193 (990)
.|---.|.
T Consensus 168 ~Y~Ss~~~ 175 (296)
T PRK15394 168 RYNSDCRG 175 (296)
T ss_pred eeecCCCC
Confidence 98744443
No 24
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=62.48 E-value=9.1 Score=31.31 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCEEEEccee
Q 001963 106 EEVQNVVKQLVNSGQLELINGGM 128 (990)
Q Consensus 106 p~~~~~vk~lV~~Grle~vgGgw 128 (990)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 35566678999999999998877
No 25
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=60.49 E-value=98 Score=30.48 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=53.7
Q ss_pred CceEEc-CCeEEEEEeCCCCeEEEEEecCCCcEEEEEEEEEEeeccCCCC----CCeeeEEEEeCCceEEEEEEec--Ce
Q 001963 595 DTIEVG-PGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSK----DLQLSFTILRGPLLDEVHQRIN--PW 667 (990)
Q Consensus 595 ~~~~ie-N~~~~l~~~~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~g~~----~~~~~i~v~~Gpl~~~v~~~~~--~~ 667 (990)
+.-+|+ ++.|+|+++..++.+. |++|++|....+-.++.+....+|.. .+...+.+..|-=+..=.+-+. -.
T Consensus 8 gkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~~Gdg~~~fDFk~~~tf~L~DGTKItV~T~p~gng~T 86 (171)
T PF07481_consen 8 GKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDADGDGKTDFDFKGDMTFQLDDGTKITVDTVPWGNGMT 86 (171)
T ss_pred CeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCccccCCCcccceeecCceEEEeCCCCEEEEeeeecCCCcE
Confidence 345677 7889999997788998 99999999888766666532222221 2333455666642222222232 23
Q ss_pred EEEEEEEecCCCceEEE
Q 001963 668 IYQVTRVYKGKDHAEIE 684 (990)
Q Consensus 668 i~~~vrLy~~~~~ie~e 684 (990)
+...+.+-++...+.++
T Consensus 87 ~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 87 YASKLTITNGDNAWQVE 103 (171)
T ss_pred EeeeEEEEcCCceEEEe
Confidence 44456666777666654
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=38.32 E-value=26 Score=33.88 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEc
Q 001963 69 CVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELIN 125 (990)
Q Consensus 69 ~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vg 125 (990)
.....+..|-+.|.++|.+.-+..|++ +...-..+.|.++|++|||++..
T Consensus 27 ~~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~ 76 (137)
T TIGR03826 27 EEEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKH 76 (137)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccC
Confidence 456778888899999999877765554 23334456799999999999864
No 27
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=28.76 E-value=1e+02 Score=32.53 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHH-------HHHHHHHHHHCCCEEEEccee
Q 001963 70 VQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEE-------VQNVVKQLVNSGQLELINGGM 128 (990)
Q Consensus 70 v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~-------~~~~vk~lV~~Grle~vgGgw 128 (990)
.+--+-.++.-+++=|...|++.++.-|+.-.....|. .|++++.|=..|-|||+|-|-
T Consensus 185 ~rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 185 SRGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred ccchHHHHHHHHHhcCccceeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 34556667777788888899999999888888777663 566777777899999999774
No 28
>PRK10148 hypothetical protein; Provisional
Probab=28.55 E-value=22 Score=34.96 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.4
Q ss_pred CcceeecCCCCCchhhH
Q 001963 160 PRIGWQIDPFGHSAVQA 176 (990)
Q Consensus 160 p~v~w~~D~FGhs~~~p 176 (990)
++.||..|+||++|++-
T Consensus 123 ~~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 123 HGFGKVTDKFGVPWMIN 139 (147)
T ss_pred hccEEEECCCCCEEEEE
Confidence 46799999999999764
No 29
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=26.34 E-value=1.1e+02 Score=37.53 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=68.8
Q ss_pred ccchhhhheeeccCccchhhhHHHHHHH-HHHHHH--hCCCCeEEEechhHH-HHHHhcCCHHHHHHHHHHHHCCCEEEE
Q 001963 49 GWLKTVDQYYVGSNNSIQVACVQNVLDS-LIPALV--ADKNRKFIYVEQAFF-QRWWRDQSEEVQNVVKQLVNSGQLELI 124 (990)
Q Consensus 49 gWl~t~~ey~~~~~~~i~~~~v~~il~~-vi~~L~--~~p~~kF~~~e~~~~-~~w~~~~~p~~~~~vk~lV~~Grle~v 124 (990)
.=|.+||+||. .+|.. ..+.-+ .+|.|.|..++..|. .+=|. ...+-....+.|+.=|=
T Consensus 54 ~~L~~FE~yy~------------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw~-sa~dFgt~~hTLigY~v---- 116 (682)
T PHA03393 54 DDLDTFERYYK------------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPWT-SANDFGTLCHTLIGYCV---- 116 (682)
T ss_pred hHHHHHHHHHH------------HHHHHHHHhhhhhhcCCcccccCCCceecCCcccc-CHHHHHHHHHHHHhheE----
Confidence 45889999985 22222 223333 478888987666552 12222 12222333455544322
Q ss_pred cceeeecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCC-------CchhhHHHH
Q 001963 125 NGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFG-------HSAVQAYLL 179 (990)
Q Consensus 125 gGgwv~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FG-------hs~~~p~ll 179 (990)
-|..++.++-.-..+..++..|++++.+++...+. ++-.|+| .|-+||..|
T Consensus 117 --ry~~~~d~lY~d~~LA~nL~~aL~~I~~~LP~p~p--~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 117 --RYNNPNDALYQDPELAYNLINALRLIYSHLPDPAP--HQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred --EecCCCccccCCHHHHHHHHHHHHHHHhcCCCCCc--ccCCCCCCcCceeeEEccHHHHH
Confidence 24566667777788999999999999999988763 2445555 677888877
No 30
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=25.49 E-value=5.6e+02 Score=26.88 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=78.1
Q ss_pred cchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCC-CeEEEechhHHHHHHhcCCHHHHHHHHHHHHCCCEEEEccee
Q 001963 50 WLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGM 128 (990)
Q Consensus 50 Wl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~-~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV~~Grle~vgGgw 128 (990)
-.-|||+.+. .. ....+++.|+++-- .+|-..+ .|.+..|+..+++.+ +|.- +-+=+|
T Consensus 67 v~lTFDDg~~--------~~---~~~~il~iL~k~~i~ATfFv~g------~~i~~~p~~~~~~~~---~Ghe-ig~H~~ 125 (267)
T COG0726 67 VALTFDDGPL--------DG---NTPRILPLLKKYGIKATFFVVG------SWIERNPDLVKRIAE---AGHE-IGNHGY 125 (267)
T ss_pred EEEEeecCCC--------CC---CcHHHHHHHHHcCCceEEEEeh------HhhHHCHHHHHHHHh---ccCe-ehhCcc
Confidence 3457887765 11 56677888887754 4565554 455556665544444 6665 667888
Q ss_pred eecccCCCCHHHHHHHHHHHHHHHHHHcCCCCcceeecCCCCC-chhhHHHHHhhcCCc
Q 001963 129 CMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFD 186 (990)
Q Consensus 129 v~~Dea~~~~es~i~ql~~G~~~l~~~fG~~p~v~w~~D~FGh-s~~~p~ll~~~~G~~ 186 (990)
--.+....+.+.+..++...+..+.+..|..|+ |.--|.|. +...-.+. +..|+.
T Consensus 126 ~h~~~~~~~~~~~~~~i~~~~~~l~~~~g~~~~--~~r~p~g~~~~~~~~~~-~~~g~~ 181 (267)
T COG0726 126 DHPDLQDLSLEELGAEIARAHDILKKITGGRPR--GFRPPYGSYNESSLALA-RRLGYR 181 (267)
T ss_pred cCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc--eEECCCCccCHHHHHHH-HhCCCc
Confidence 777777778888888999999999999998833 55566664 45667776 788886
No 31
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=22.77 E-value=1.3e+02 Score=27.92 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=43.5
Q ss_pred EEEEEeCccCCCccchhhhheeeccCccchhhhHHHHHHHHHHHHHhCCCCeEEEechhHHHHHHhcCCHHHHHHHHHHH
Q 001963 37 NVHLVPHSHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLV 116 (990)
Q Consensus 37 ~V~lvpHSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vi~~L~~~p~~kF~~~e~~~~~~w~~~~~p~~~~~vk~lV 116 (990)
+|.=+|=.|.|.--+.....-| .++.+++-.|+..+.... .+|| ..-|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~---------~~~arvIg~vl~~~~~~i------------~D~f------~~~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEF---------QKAARVIGEVLGHSDQGI------------GDWF------LEYRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCccc---------cHHHHHHHHHHHhcCcCC------------ChHH------HHHHHHHHH
Confidence 3444566777777776444433 366777777777752221 1233 235899999
Q ss_pred HCCCEEEEcceeeecc
Q 001963 117 NSGQLELINGGMCMHD 132 (990)
Q Consensus 117 ~~Grle~vgGgwv~~D 132 (990)
++|+||+.|..-.|.+
T Consensus 93 ~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMRH 108 (111)
T ss_pred HCCCEEEecCCCcccc
Confidence 9999999876555543
No 32
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=20.85 E-value=4.5e+02 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=23.8
Q ss_pred CceEEcCCeEEEEEeCCCCeEEEEEecC
Q 001963 595 DTIEVGPGNLKLLYSGKRAKLMRYINSK 622 (990)
Q Consensus 595 ~~~~ieN~~~~l~~~~~~G~l~si~dk~ 622 (990)
..++|+|+.++++|+...|.|.++.-|+
T Consensus 74 ~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 74 KRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CeEEEECCeEEEEEeCCCceeeeecccc
Confidence 4689999999999997778999887664
Done!