BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001964
         (990 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
 pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
          Length = 901

 Score = 33.1 bits (74), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 636 RIIDETLDAFFQLPIPMHPALLPDLMAG 663
           +II+E L + F LP  M  ALLPDL+AG
Sbjct: 532 QIINEDLHSVFSLPDDMFNALLPDLIAG 559


>pdb|1OHF|A Chain A, The Refined Structure Of Nudaurelia Capensis Omega Virus
 pdb|1OHF|B Chain B, The Refined Structure Of Nudaurelia Capensis Omega Virus
 pdb|1OHF|C Chain C, The Refined Structure Of Nudaurelia Capensis Omega Virus
 pdb|1OHF|D Chain D, The Refined Structure Of Nudaurelia Capensis Omega Virus
          Length = 644

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 919 LFRTDTESLIERFRRVTLETYGSSARSRLPLPP-TSGQWNPTEP 961
           L  T + + +  FR +  ET  +S RS +PLPP T GQ  P  P
Sbjct: 396 LATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNP 439


>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
 pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
 pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
           Rubidium
          Length = 1034

 Score = 31.6 bits (70), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 518 VAVATLHACYG--NEIK--QFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDG 573
           +AV  +  C+G   E K    I+S   L P    V+R  DK + +  Q+ V D V+   G
Sbjct: 147 IAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGG 206

Query: 574 GK 575
            +
Sbjct: 207 DR 208


>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90, Bound To Adp
 pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90, Bound To Adp
 pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90, Bound To Adp
 pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90, Bound To Adp
 pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90
 pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
           Coli Hsp90
          Length = 624

 Score = 30.8 bits (68), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 467 EKADSSRRASKNQPNPL--PVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLH 524
           ++ D S + ++    P    V A+L + V ++ +  R   +P +           +A L 
Sbjct: 495 DEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLF 554

Query: 525 ACYGNEIKQFISSIVELTPDAVQVLRAAD 553
           A  G ++ + +  I EL PD V V RAAD
Sbjct: 555 AAAGQKVPE-VKYIFELNPDHVLVKRAAD 582


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,966,078
Number of Sequences: 62578
Number of extensions: 967346
Number of successful extensions: 2375
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 8
length of query: 990
length of database: 14,973,337
effective HSP length: 108
effective length of query: 882
effective length of database: 8,214,913
effective search space: 7245553266
effective search space used: 7245553266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)