BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001964
         (990 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58939|Y1544_METJA Uncharacterized protein MJ1544 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ1544 PE=4 SV=1
          Length = 441

 Score = 39.7 bits (91), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 171 ISAAQVGRKIESTVLPLELLQQLKYSDFTDQQEYDAWQK-RTLKLLEAGLLL--HPRVPL 227
           I+ +  GR +++ +LPL   + LK+ +F  ++ Y   +K   LK L   +     P + L
Sbjct: 152 IATSLRGRNLKTEILPLNFKEFLKFKNFNVKKRYSTIEKAELLKYLNEFIKFGGFPEITL 211

Query: 228 -DKSNIAAQRLRQIISAALDRPI---ETGRNNESMQVLRSTVISLAS 270
            D  NI  + L++ +     R +    + RN + ++VLR+ +I+L +
Sbjct: 212 IDDENIKKEILKEYLDGIFYRDVVERHSIRNIKEIKVLRNILINLFA 258


>sp|P38750|YHA8_YEAST Uncharacterized transporter YHL008C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YHL008C PE=1 SV=1
          Length = 627

 Score = 35.4 bits (80), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 29/142 (20%)

Query: 69  GKPLSFIPNSNSSSDSPTHHNLSSPSHNSPTLQRSLTSAAASKMKKALGLKSPGSGSKKS 128
           G+P+ FIP SNS++ SP   +L  P HN P    S+ S    ++ K   L+SP       
Sbjct: 361 GEPVQFIPKSNSTTRSP---HLGLP-HNLPH-NHSIKSINRHRINKRHSLRSP------- 408

Query: 129 PGSGPGSGQGKSKKALTVGELMRTQMGVSETVDSR-----VRRALLRISAAQVGRKIEST 183
           PG  P  G G+         L R +     T D +     +RRA    SA    +K E  
Sbjct: 409 PGVFPVRGMGEP--------LEREKTIEDATYDPKENELFLRRAETHNSAYVKNKKKEDD 460

Query: 184 VLPLELLQQLKYSDFTDQQEYD 205
                LL+ +K  +  +Q+EY+
Sbjct: 461 ----NLLRLVKTEEDREQKEYE 478


>sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3
          Length = 2210

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 872  SRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFS--ATARGVLPLFRTDTESLIE 929
            ++  T +   I+E    ++K  F A G+GL    ++K     + R  L L+   T++LI+
Sbjct: 1963 AKGLTPRQCAIVEVVLATIKQYFHAGGNGLKKNFLEKSPDLHSLRYALSLYTQTTDALIK 2022

Query: 930  RFRRVTLETYGSSARS 945
            +F    +ET GS +RS
Sbjct: 2023 KF----IETQGSQSRS 2034


>sp|Q92DX0|CHER_LISIN Chemotaxis protein methyltransferase OS=Listeria innocua serovar 6a
           (strain CLIP 11262) GN=cheR PE=3 SV=1
          Length = 262

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 35/170 (20%)

Query: 732 VPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQ 791
           +  + I +++F R ++  DVLEK+VI  L        ED S G   K  +  AAC  G +
Sbjct: 66  ISLITINVSAFFRNRNRWDVLEKQVIPRL-------LED-SRG---KLRVWSAACSSGEE 114

Query: 792 QLSEAVA---------YKIVFHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLI----- 837
             S A+          Y I+  DL   +     +GE  S ++E L ++  R+  I     
Sbjct: 115 PYSLAIMMERSVGTRHYDILATDLEPAILKRAVIGEYQSRQMEELNEQERRSAFIEKGDT 174

Query: 838 --ISDTVHERVRTR---IITDIMKASFD-----GFLLVLLAGGPSRAFTR 877
             I     + +R R   ++TD  +  FD       L+   A G  +A+ +
Sbjct: 175 YQILPEYRKAIRFRRHDLLTDYYEKGFDLIVCRNVLIYFTAEGKHQAYQK 224


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,457,522
Number of Sequences: 539616
Number of extensions: 15351763
Number of successful extensions: 66199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 65770
Number of HSP's gapped (non-prelim): 375
length of query: 990
length of database: 191,569,459
effective HSP length: 127
effective length of query: 863
effective length of database: 123,038,227
effective search space: 106181989901
effective search space used: 106181989901
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)