Query 001964
Match_columns 990
No_of_seqs 155 out of 165
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05664 DUF810: Protein of un 100.0 2E-182 5E-187 1608.1 64.8 657 46-754 1-677 (677)
2 KOG1011 Neurotransmitter relea 99.9 7.9E-25 1.7E-29 248.4 35.3 533 308-935 469-1096(1283)
3 KOG1328 Synaptic vesicle prote 99.8 2.6E-17 5.5E-22 190.5 41.1 539 307-931 344-918 (1103)
4 PF10540 Membr_traf_MHD: Munc1 99.7 8.4E-17 1.8E-21 159.5 8.8 110 822-931 2-137 (137)
5 PF06046 Sec6: Exocyst complex 98.9 1.4E-08 3E-13 122.3 14.5 440 445-973 77-531 (566)
6 KOG2180 Late Golgi protein sor 98.0 0.025 5.4E-07 68.6 35.3 523 338-935 140-704 (793)
7 COG5173 SEC6 Exocyst complex s 97.0 0.67 1.5E-05 55.3 28.8 416 446-977 253-705 (742)
8 KOG2286 Exocyst complex subuni 96.5 0.8 1.7E-05 56.7 25.6 348 525-974 273-635 (667)
9 PF04091 Sec15: Exocyst comple 96.4 0.011 2.5E-07 66.8 9.4 252 623-922 26-279 (311)
10 PF04437 RINT1_TIP1: RINT-1 / 96.4 0.083 1.8E-06 63.4 16.7 290 591-925 131-450 (494)
11 KOG3543 Ca2+-dependent activat 95.9 2.8 6.2E-05 50.6 25.4 325 291-652 610-953 (1218)
12 PF04100 Vps53_N: Vps53-like, 75.9 1.7E+02 0.0037 34.5 25.8 115 502-618 262-383 (383)
13 PF06292 DUF1041: Domain of Un 75.6 13 0.00029 36.0 7.9 53 484-536 50-104 (106)
14 PF10191 COG7: Golgi complex c 72.7 2.9E+02 0.0063 35.7 21.4 271 385-675 122-437 (766)
15 PF14923 CCDC142: Coiled-coil 64.1 8.7 0.00019 45.9 4.8 109 813-931 275-388 (450)
16 PF12854 PPR_1: PPR repeat 42.6 34 0.00074 26.0 3.4 32 285-320 2-33 (34)
17 KOG2307 Low density lipoprotei 41.8 8E+02 0.017 30.7 25.9 217 626-863 352-614 (705)
18 KOG4654 Uncharacterized conser 36.6 1.5E+02 0.0031 31.8 7.8 86 827-914 45-134 (252)
19 PF15080 DUF4547: Domain of un 33.8 32 0.00068 35.7 2.5 97 821-936 70-169 (196)
20 PF10474 DUF2451: Protein of u 29.5 1.5E+02 0.0033 32.6 7.2 151 731-894 3-166 (234)
21 KOG4032 Uncharacterized conser 28.1 2.4E+02 0.0052 30.1 7.8 78 328-418 37-114 (184)
22 KOG0433 Isoleucyl-tRNA synthet 26.0 2.2E+02 0.0047 36.4 8.1 102 734-858 690-795 (937)
23 KOG0819 Annexin [Intracellular 24.4 1.3E+02 0.0028 34.7 5.5 34 154-187 52-85 (321)
24 PRK05094 dsDNA-mimic protein; 23.1 56 0.0012 31.8 2.0 20 46-65 6-25 (107)
25 PF06222 Phage_TAC: Phage tail 22.4 1.1E+02 0.0024 30.7 3.9 40 845-885 62-101 (127)
26 PF01923 Cob_adeno_trans: Coba 21.2 5.2E+02 0.011 26.7 8.8 114 821-936 23-153 (163)
27 PF12290 DUF3802: Protein of u 21.1 3.8E+02 0.0081 26.6 7.1 78 817-896 28-109 (113)
28 PF08385 DHC_N1: Dynein heavy 20.7 1.1E+03 0.024 28.6 13.1 88 586-675 443-538 (579)
No 1
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=100.00 E-value=2.4e-182 Score=1608.11 Aligned_cols=657 Identities=59% Similarity=0.958 Sum_probs=619.8
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCcccccchhhhHhhHHHHHhCCCCCCCCC
Q 001964 46 QLSDSDLRLTAYEIFVAACRTSTGKPLSFIPNSNSSSDSPTHHNLSSPSHNSPTLQRSLTSAAASKMKKALGLKSPGSGS 125 (990)
Q Consensus 46 ~l~~~dlretayei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~lg~~~~~~~~ 125 (990)
||||||||||||||||||||+||| ++|++++ .+ ...||+|||||||++++..
T Consensus 1 ~ls~~dlRetAYEi~~a~~~~s~~--~~~~~~~-----~~---------------------~~~s~~k~~lgl~~~~~~~ 52 (677)
T PF05664_consen 1 GLSDDDLRETAYEILLASCRSSGG--LIYFSQS-----KK---------------------KEKSRVKKALGLKSSKSGS 52 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCC--CccCccc-----cc---------------------cchhHHHHHhcCCCCCCCC
Confidence 799999999999999999999965 8887641 21 1239999999999988522
Q ss_pred CCCCCCCCCCCCCCCCCcchhHHHHHHhhcccchhhhHHHHHHHHHHHHhhcccccceeechhhhhccCCCCCCChHHHH
Q 001964 126 KKSPGSGPGSGQGKSKKALTVGELMRTQMGVSETVDSRVRRALLRISAAQVGRKIESTVLPLELLQQLKYSDFTDQQEYD 205 (990)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~e~mr~Qm~Ise~~d~~~r~~llr~l~gq~g~r~~~~~LpLell~~l~~sDF~~~~~y~ 205 (990)
.+++|+++|||+|++||||+||+|+|++|+||||+|||+++||+|||+|+++||||||++++++||+|++||+
T Consensus 53 -------~~~~~~~~~~~~~~~e~~r~qm~vse~~d~r~r~~l~~~~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~ 125 (677)
T PF05664_consen 53 -------SVSSPGRPRRPMTSAEIMRVQMRVSEQMDARIRRALLRAAAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYE 125 (677)
T ss_pred -------CCCCCCCCCCcchHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhCCHhhCCCHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhCCCCCCCcCChHHHHHHHHhhh-----hcCCCCcccCchhhHHHHHhhhhhhcccC-CCC-CCC
Q 001964 206 AWQKRTLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISA-----ALDRPIETGRNNESMQVLRSTVISLASRS-DGS-LNE 278 (990)
Q Consensus 206 ~Wqkrql~~leagL~~~P~~pl~ks~~~~~~Lr~~~~~-----s~~~~~~~~~~~e~~r~l~~~~~~La~rs-~~~-~~e 278 (990)
+|||||+++|||||++||.+|++|++..+++||++|+. ++++|++||+++|+||+|+++|++||||+ .+| .+|
T Consensus 126 ~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e 205 (677)
T PF05664_consen 126 QWQKRQLKVLEAGLLNHPSVPLDKSNASAQRLRQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGE 205 (677)
T ss_pred HHHHHHHHHHHHHHHhCcCCCccccchhHHHHHHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 99999999999999999999999999999999999998 89999999999999999999999999995 556 899
Q ss_pred CcccccCCCCCHHHHHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHhcCCCChhhHH
Q 001964 279 PCHWADGFPFNLRLYEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADTDLLY 358 (990)
Q Consensus 279 ~~hwa~g~Pln~rlY~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h~vcf~wVlf~qfv~t~qie~dlL~ 358 (990)
+||||||||+|+|||++||++|||++|||+|+||+||+||+||+||++|||||++||+||+||+|+|||+|| |+|||.
T Consensus 206 ~chWadgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tg--e~~LL~ 283 (677)
T PF05664_consen 206 TCHWADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATG--EPDLLK 283 (677)
T ss_pred ccccccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhhc-cCCChhhHH------------hHHHHHHhhHHHHHHHHhhHHhhhcCCchHHHHHHHHHHHHHhh
Q 001964 359 AADNQLAEVAKDAK-ATKDPEYAK------------ILSSTLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAK 425 (990)
Q Consensus 359 aa~~~l~ev~~d~k-~~~~~~y~~------------~l~s~l~~i~~W~~k~L~dyH~~f~~~~~~~me~i~~v~~~~~~ 425 (990)
+|+++|++|+.|+| .++++.|.+ +|+|+|++|++|++|||+|||+||.+++++.|+++++|++.+++
T Consensus 284 ~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~ 363 (677)
T PF05664_consen 284 AAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAK 363 (677)
T ss_pred HHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHH
Confidence 99999999999988 699999999 99999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhcc
Q 001964 426 ILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFS 505 (990)
Q Consensus 426 ~l~ed~~~~~~~~~~~~~~~~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fS 505 (990)
|+++|++..++.... ..++++||.||++|+++||++..+..+++ .+.++.|+|++||++|++||.+|+++||
T Consensus 364 il~ed~~~~~~~~~~---~~~~~~ie~YIrsSi~~Af~~~~~~~~~~-----~~~~~~~~L~~LA~ei~~la~~e~~~Fs 435 (677)
T PF05664_consen 364 ILGEDVSREYRRKRS---KVARSRIESYIRSSIKAAFARMASSVDSR-----SDSEPSHVLAQLAKEIKELAKKEKEVFS 435 (677)
T ss_pred HHhhchhHHHHhhhc---cchHHHHHHHHHHHHHHHHHhhhhhhhhc-----ccccchHHHHHHHHHHHHHHHHhHHhcC
Confidence 999999977764432 27899999999999999999988877766 3678999999999999999999999999
Q ss_pred chhhhccccchhhhHHHHHHHHHhhHHHHHHHHHhhcHHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcc
Q 001964 506 PILKRWHPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYE 585 (990)
Q Consensus 506 PiL~r~~P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~lt~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~ 585 (990)
|+|++|||.|++|||++||.|||++||+|+++++++|+++++|+++||+|||+|+||+ +++|||||++++++|+||+
T Consensus 436 PiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~---~~~~edggk~~~rem~Py~ 512 (677)
T PF05664_consen 436 PILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMV---SVDCEDGGKSLIREMPPYE 512 (677)
T ss_pred chhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHH---HhhccccccccccCCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999 7788999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHhhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCCcccchHHHHHHHH
Q 001964 586 AEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLD 665 (990)
Q Consensus 586 iE~~~~~~v~~Wi~~~~~ki~ewV~raiq~E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~Ls~gl~ 665 (990)
+|+++.+|||+||+++++++.+||+||+++|+|+|++++++||+|||||||||+||||+||+||||+++.+|++|++||+
T Consensus 513 vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld 592 (677)
T PF05664_consen 513 VESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLD 592 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceeeeeccHHHH
Q 001964 666 RCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRI 745 (990)
Q Consensus 666 ~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyi 745 (990)
++||+||++|+++||++++|||++|+||||+++++|+++|||+..+...+.+.... ..+++++|++|||||||||+
T Consensus 593 ~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~~~~~~~~----~~~~~~~~~lcVrLNtL~yi 668 (677)
T PF05664_consen 593 KALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTNPDERFSS----KINSQFTPRLCVRLNTLEYI 668 (677)
T ss_pred HHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcCcccccccccc----CcccCccCceeeeecHHHHH
Confidence 99999999999999999999999999999999999999999997555433333311 14578899999999999999
Q ss_pred HHHHHHHHH
Q 001964 746 KSELDVLEK 754 (990)
Q Consensus 746 l~~Ld~LEk 754 (990)
++||++|||
T Consensus 669 l~qL~~LEK 677 (677)
T PF05664_consen 669 LSQLDKLEK 677 (677)
T ss_pred HHHHHhhcC
Confidence 999999996
No 2
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.9e-25 Score=248.38 Aligned_cols=533 Identities=16% Similarity=0.284 Sum_probs=369.8
Q ss_pred cchHHHHHHHHHHHhhhhccCCch-hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-----------Hhh---hc
Q 001964 308 SIIEEVDELMEQIKKTWVILGMNQ-MLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEV-----------AKD---AK 372 (990)
Q Consensus 308 ~l~~E~dElLe~lk~tW~~LGI~q-~~h~vcf~wVlf~qfv~t~qie~dlL~aa~~~l~ev-----------~~d---~k 372 (990)
.+-|-..|+.++..-++.+=.|-| |.|-.| |-.+|..-| .|-.+..-+.-++-. ++| +.
T Consensus 469 ~fdetaqeivdefamrygiesiyqamthfac----l~skymcpg--vpavmstllaninayyahttastnvsasdrfaas 542 (1283)
T KOG1011|consen 469 YFDETAQEIVDEFAMRYGIESIYQAMTHFAC----LSSKYMCPG--VPAVMSTLLANINAYYAHTTASTNVSASDRFAAS 542 (1283)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH----HhhcccCCC--cHHHHHHHHHhhhHHhhccccccccCcchhhhhh
Confidence 445567899999999998766777 677776 567899877 455444433333321 111 00
Q ss_pred cCCChhhHHhHHHHHHhhHHHHHHHHhhHHhhhcCCchHHHHHHHHHH-------HHHhhhhhccchhhhhhcccCCCCc
Q 001964 373 ATKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLG-------VSSAKILTEDISNEYRRRRKGEVDV 445 (990)
Q Consensus 373 ~~~~~~y~~~l~s~l~~i~~W~~k~L~dyH~~f~~~~~~~me~i~~v~-------~~~~~~l~ed~~~~~~~~~~~~~~~ 445 (990)
+-...-|.|+|..+-++. .=-|+.|..+|+.+.-..++.+-+-. ..-.+...- .. -..
T Consensus 543 nfgkerfvklldqlhnsl----ridls~yrnnfpassperlqdlkstvdlltsitffrmkvqel-----qs------ppr 607 (1283)
T KOG1011|consen 543 NFGKERFVKLLDQLHNSL----RIDLSAYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQEL-----QS------PPR 607 (1283)
T ss_pred cccHHHHHHHHHHHhhhh----eeeHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cC------CCh
Confidence 000111344554443332 34588899999988777666644333 322332210 00 113
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhccchhhhcccc---chhhhHHH
Q 001964 446 PRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPL---AAGVAVAT 522 (990)
Q Consensus 446 ~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~~P~---a~~Vaa~~ 522 (990)
+.+-|.+++...+...|.-+.++.--.-..+...-+|-.- |..-|..+.+.+++.|.|.|.+. |. .+-++|-+
T Consensus 608 asqvvkdcvkaclnstye~ifnnchelys~s~~nldfw~k---lit~ivsiieedknsytp~lnqf-pqelnvgk~saev 683 (1283)
T KOG1011|consen 608 ASQVVKDCVKACLNSTYEYIFNNCHELYSPSITNLDFWYK---LITLIVSIIEEDKNSYTPALNQF-PQELNVGKLSAEV 683 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH---HHHHHHHHHHhccccCChhhhhC-hhhhccccchHHH
Confidence 4556777777777777777666532111111123344333 44555666677899999999764 33 35567888
Q ss_pred HHHHHHhhHHHHHHHHHh--hc--HHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcchhhhhHHHHHHHH
Q 001964 523 LHACYGNEIKQFISSIVE--LT--PDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWL 598 (990)
Q Consensus 523 Lh~~yg~~Lk~fl~~v~~--lt--~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~iE~~~~~~v~~Wi 598 (990)
+-.+|.+++|--++.-.. ++ ++-+..--...-|+. -|+-|.. .+-...+- --..|.+||.+|+
T Consensus 684 mw~lfaqdmk~aleeh~k~~~cksadymnl~fkvk~ly~----eyv~dlp-------~~k~~vpe--ypawf~pfv~qwl 750 (1283)
T KOG1011|consen 684 MWSLFAQDMKYALEEHAKKKLCKSADYMNLHFKVKWLYN----EYVADLP-------TYKSSVPE--YPAWFEPFVMQWL 750 (1283)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCcchhheeeehhhhHH----HHHhhch-------hhhccCCC--chHHHHHHHHHHh
Confidence 899999999986664322 22 222221111112222 2221111 00011111 2368999999999
Q ss_pred HHHHhHHHHHHHhhhhc---cccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCC---cccchHHHHHHHHHHHHHHH
Q 001964 599 KTRIDRLKEWVDRNLQQ---EDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPM---HPALLPDLMAGLDRCLQYYV 672 (990)
Q Consensus 599 ~~~~~ki~ewV~raiq~---E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~---~~~~l~~Ls~gl~~~lq~Y~ 672 (990)
++..+.-.+++..|++. |.|.--+++..||.||||+|.-+|++++.+.+|+.|+ .+.+|+.|+++|.+.+-+|+
T Consensus 751 denee~s~dflrga~e~dkkdgf~qtseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllqya 830 (1283)
T KOG1011|consen 751 DENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQYA 830 (1283)
T ss_pred ccchHHHHHHHHhHhhcccccCccccchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 5788888999999999999999999999999999996 57899999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCcchhhhh-hhccCCCCCccCCCcccccccccccccCceeeeeccHHHHHHHHHH
Q 001964 673 TKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVW-KKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDV 751 (990)
Q Consensus 673 ~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~-Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~ 751 (990)
+.+. | .|-++. |++. -|+-+||.+.++.||++
T Consensus 831 divs-----k-----------------dfp~y~~kekl-------------------------pcilmnnvqqlrvqlek 863 (1283)
T KOG1011|consen 831 DIVS-----K-----------------DFPKYCHKEKL-------------------------PCILMNNVQQLRVQLEK 863 (1283)
T ss_pred HHHh-----h-----------------hhhhhhhhccC-------------------------CeeeeccHHHHHHHHHH
Confidence 9994 1 121111 2222 29999999999999999
Q ss_pred HHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheee------eecchhhhhh----hhccCCCC-
Q 001964 752 LEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIV------FHDLSHVLWD----GLYVGEPS- 820 (990)
Q Consensus 752 LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlV------F~Dl~~~l~~----~LY~g~V~- 820 (990)
+-+.|-. ...+..+...+...+..+++.+|.|+.++++.+- ...|.+.+.. ++-...|+
T Consensus 864 mfeamgg----------keld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~~a~~sva~ 933 (1283)
T KOG1011|consen 864 MFEAMGG----------KELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTGLAKTSVAQ 933 (1283)
T ss_pred HHHHhcc----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccccchhhccc
Confidence 9887633 1233356677778899999999999999887543 2245555432 23333343
Q ss_pred --ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------
Q 001964 821 --SSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLL------------------------------- 867 (990)
Q Consensus 821 --~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL------------------------------- 867 (990)
++-++|+++.||.+|...+..+..++-.+|++++||-.+..++.-+.
T Consensus 934 dad~vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm~tmek~ivlppltdqt~~~~l~~~ki~~~t~~tq~~f~a 1013 (1283)
T KOG1011|consen 934 DADAVLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVMNTMEKRIVLPPLTDQTLLKQLPNAKIGDVTKLTQTIFQA 1013 (1283)
T ss_pred chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCCcchhHHhccccccccchhhHHHHHHHH
Confidence 66799999999999999999999999999999999999877765332
Q ss_pred -------------CCCCCCCCCccchHHHHHHHHHHHHhhccCCCCCcHHHHHHH--HHHHhhcccccccChHHHHHHHH
Q 001964 868 -------------AGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF--SATARGVLPLFRTDTESLIERFR 932 (990)
Q Consensus 868 -------------~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~--a~~v~~vl~L~~~~Te~LIe~~~ 932 (990)
.....|.++++++..++-.|..+|++|+|+|-||...++|+. .+.++..|.||.|.||+||..|.
T Consensus 1014 ak~l~lsk~k~hmvree~ksltpkqcavld~aldtikq~fhagg~glkktflekspdlqslryalslytqttd~liktfv 1093 (1283)
T KOG1011|consen 1014 AKELNLSKLKDHMVREEEKSLTPKQCAVLDLALDTIKQYFHAGGKGLKKTFLEKSPDLQSLRYALSLYTQTTDQLIKTFV 1093 (1283)
T ss_pred HHhcchhhHHHHHHHHHhccCCccceehhhhhHHHHHHHHhccCcchhhhHhhcCccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111248899999999999999999999999999999999998 89999999999999999999997
Q ss_pred HHh
Q 001964 933 RVT 935 (990)
Q Consensus 933 ~~~ 935 (990)
+.-
T Consensus 1094 ~sq 1096 (1283)
T KOG1011|consen 1094 TSQ 1096 (1283)
T ss_pred Hhh
Confidence 764
No 3
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-17 Score=190.54 Aligned_cols=539 Identities=16% Similarity=0.226 Sum_probs=341.8
Q ss_pred ccchHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhhccC-CChhhHHhHHH
Q 001964 307 TSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAKAT-KDPEYAKILSS 385 (990)
Q Consensus 307 ~~l~~E~dElLe~lk~tW~~LGI~q~~h~vcf~wVlf~qfv~t~qie~dlL~aa~~~l~ev~~d~k~~-~~~~y~~~l~s 385 (990)
|.+.+-+.-||-....--. + -.+|..+--|+.|.+...|-.+++.+|...++=+..-= ...+ -+...-..|+-
T Consensus 344 G~lp~pA~tIL~qha~Qsd---L-sdlhlAm~rw~a~~~~~~s~~ld~s~L~~lL~di~~~W--~~~~qL~~e~E~~LaD 417 (1103)
T KOG1328|consen 344 GVLPEPAMTILRQHAIQSD---L-SDLHLAMCRWLAFHSMIHSIDLDFSLLYKLLQDIIDKW--QPLTQLDKEEEDMLAD 417 (1103)
T ss_pred CCCCchHHHHHHHHHhccC---C-cHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhh--cCcccCCHHHHHHHHH
Confidence 4666666666654443322 2 27899999999999999988888888766554332211 1111 22333345677
Q ss_pred HHHhhHHHHHHHHhhHHhhhcCCchHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHH
Q 001964 386 TLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQR 465 (990)
Q Consensus 386 ~l~~i~~W~~k~L~dyH~~f~~~~~~~me~i~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yIrsS~~~af~~~ 465 (990)
.+++....+.+++.-.-|+|+-.|....+.+-++.--+++.-..-+.+.+-|= -..+...|...++.+...-|+++
T Consensus 418 s~s~F~e~~l~~~r~hRd~Fpa~n~~s~~rle~LlkClg~L~~~~~~~~~cPf----~~~~~~~~~~al~kg~~~w~dr~ 493 (1103)
T KOG1328|consen 418 SFSSFDEYCLRMMREHRDKFPASNRNSGERLESLLKCLGALRESPFYQKYCPF----KRPFHAHLESALVKGAEDWIDRS 493 (1103)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHhcCcchHhhCCC----CccchHHHHHHHHhhhHHHHHHH
Confidence 77777778888888888999987776555544444333333222222232211 12467789999999999999999
Q ss_pred HhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHhhHHHHHHHHHh-hcHH
Q 001964 466 MEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHACYGNEIKQFISSIVE-LTPD 544 (990)
Q Consensus 466 le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~~P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~-lt~~ 544 (990)
|+...+..+ +. -+.++-.-+.+++. -...|..+++..+ +| ..|.-.+++|-.-+.+ ++.+
T Consensus 494 ~~~~q~~~~-------p~-l~~~~~~i~~d~q~-~~~~Yaalf~~v~----~i------dyf~lt~~q~drlv~Ee~~s~ 554 (1103)
T KOG1328|consen 494 IESVQDPDP-------PK-LLLQLLNIVNDQQS-RFLHYAALFREVA----RI------DYFQLTLNQFDRLVTEELTSE 554 (1103)
T ss_pred HhccCCCCC-------ch-hHHHHHHHHHHHHH-HHHHHHHHHHHhh----cc------ceeeeeHHHHHHHHHHHHHHH
Confidence 997665432 21 22333333333322 2234433332221 11 1122235555544433 2222
Q ss_pred HHH-----------HhHH------hhHHHHHH-----HHHhhhccccCCCCcccccc-CCCC---cchhhhhHHHHHHHH
Q 001964 545 AVQ-----------VLRA------ADKLEKDL-----VQIAVEDSVDSDDGGKAIIR-EMPP---YEAEGAIANLVKMWL 598 (990)
Q Consensus 545 ~~~-----------vl~a------ad~LEk~L-----v~i~~e~~~~~~dg~~~l~~-~~~P---y~iE~~~~~~v~~Wi 598 (990)
..+ +.++ .+-+|-+| +++.. . ++. ...| =+...+|.|-|+.|+
T Consensus 555 ~~~~~~~~~~sq~~ls~~~~~pv~~~lfeL~l~l~~f~~l~~--~---------~~a~~~r~lals~~ha~F~p~ik~w~ 623 (1103)
T KOG1328|consen 555 LMSEKKMDLKSQMRLSAAQDPPVEDDLFELMLILMAFVELRN--Y---------RLANRVRVLALSEWHAIFNPGIKKWL 623 (1103)
T ss_pred HhchhhhhhhhhhhcccccCCCccccHHHHHHHHHHHHHHHh--h---------cccCCCcchhhhcchhhhhHHHHHHH
Confidence 222 1111 11223332 12221 1 111 1112 234678999999999
Q ss_pred HHHHhHHHHHHHhhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCCc---ccchHHHHHHHHHHHHHHHHHH
Q 001964 599 KTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMH---PALLPDLMAGLDRCLQYYVTKA 675 (990)
Q Consensus 599 ~~~~~ki~ewV~raiq~E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~~---~~~l~~Ls~gl~~~lq~Y~~~v 675 (990)
+-..+|..--|.-|++-|.=.|.+...|||+|.||+=.++.+.-+.-..|+||+. ..+=+-|.+-+..+.-.||+.+
T Consensus 624 ~V~k~kAl~Rv~~a~~mD~~~~~~~~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li 703 (1103)
T KOG1328|consen 624 EVAKEKALARVHLACQMDMPISTSSDMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLI 703 (1103)
T ss_pred HHHHHHHHHHHHHHhccCCccccchhhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999963 2334678888888889999998
Q ss_pred HhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceeeeeccHHHHHHHHHHHHHH
Q 001964 676 KSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKR 755 (990)
Q Consensus 676 ~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~LEk~ 755 (990)
.+..+..+.+ + .+ -|+ +. .--+||-+||.||.+.-++.-+|.
T Consensus 704 ~sa~~dtq~~-----------~--a~--------~p~-------~~----------s~~lCv~iNNvE~VRrsl~~~~k~ 745 (1103)
T KOG1328|consen 704 ISAEGDTQEL-----------Q--AF--------IPS-------QL----------SHLLCVAINNVEQVRRSLNITEKL 745 (1103)
T ss_pred HHhhcccchh-----------h--hc--------ChH-------HH----------HHHHHHHHccHHHHHHHHhHHhhh
Confidence 6444433322 0 11 011 11 235899999999999999887775
Q ss_pred HHhhhccCCCccccc--cCccccccccchHHHHHHHHHHHHHhhhheeeeecchhhhhhhhccCC--CCccchhHHHHHH
Q 001964 756 VITHLRNCESAHAED--FSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGE--PSSSRIEPLLQEL 831 (990)
Q Consensus 756 I~~~~~~~~s~~~~~--~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~l~~~LY~g~--V~~~RI~plL~~L 831 (990)
.. |.. |...++ ....+....+....-+.+-|+.|.-..+-|++ -||+...++--...+ ..+.-|-|+++||
T Consensus 746 ~~--~p~--~~~~~~~~l~~~~~n~les~~~~~~~e~~ri~~~Lt~~m~-~~~~K~vfHlawSPds~~~~~a~~PL~~yL 820 (1103)
T KOG1328|consen 746 HM--DPR--SRLNGNHMLKSEIENRLESCESNICSEIDRIVGLLTERML-PQMKKHVFHLAWSPDSQLVEDALKPLTDYL 820 (1103)
T ss_pred cc--Ccc--cccCccccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-HHHHHHHHheecCccccchhhhHHHHHHHH
Confidence 32 221 111111 01111222222233333334443333333333 355543333323322 3366799999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHHhhccCCCCCcHHHHHHH-H
Q 001964 832 ERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF-S 910 (990)
Q Consensus 832 d~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~-a 910 (990)
|-+|..+..++..+...|++..+|+-.+..+..-+ |-.+-..+.=+.-+.+-+..|-+||+|+|+||+.|-++.. .
T Consensus 821 D~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~~l~~~~---g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~ 897 (1103)
T KOG1328|consen 821 DIELASLNKNLLHRNFLRVLSAQWSIVLKLLRECV---GENVDMEPAFYHRLFEALHVLVEFFHAEGQGLSLEALDTNPE 897 (1103)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---cccCCCChHHHHHHHHHHHHHHHHHhccCCCcchHhhccCcH
Confidence 99999999999999999999999999998874443 4445555555677889999999999999999999988887 7
Q ss_pred HHHhhcccccccChHHHHHHH
Q 001964 911 ATARGVLPLFRTDTESLIERF 931 (990)
Q Consensus 911 ~~v~~vl~L~~~~Te~LIe~~ 931 (990)
-.+.++|.|...+|++|||.|
T Consensus 898 ~rl~~~L~lhkt~T~~lIe~f 918 (1103)
T KOG1328|consen 898 HRLVKILSLHKTPTEQLIEKF 918 (1103)
T ss_pred HHHHHHHHhcCCCHHHHHHHH
Confidence 889999999999999999998
No 4
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=99.68 E-value=8.4e-17 Score=159.52 Aligned_cols=110 Identities=31% Similarity=0.568 Sum_probs=80.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh-cC-----------------------CCCCCCCCc
Q 001964 822 SRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL-LA-----------------------GGPSRAFTR 877 (990)
Q Consensus 822 ~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VL-L~-----------------------GGpsR~Fs~ 877 (990)
..|.|+++|||.+|.++++++.+.+..+|++++|+.++..+.-.+ +. +|..|..++
T Consensus 2 ~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 81 (137)
T PF10540_consen 2 DAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTP 81 (137)
T ss_dssp HHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCH
Confidence 458999999999999999999999999999999999988888777 42 466799999
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCcHHHH-HHH-HHHHhhcccccccChHHHHHHH
Q 001964 878 QDSQIIEDDFKSLKDLFWANGDGLPIELI-DKF-SATARGVLPLFRTDTESLIERF 931 (990)
Q Consensus 878 ~D~~~iEeDl~~Lk~~F~a~GeGLp~e~v-e~~-a~~v~~vl~L~~~~Te~LIe~~ 931 (990)
.+++.++.+++.|++||||+|+|||.+.+ ++. ++.++.++.||+++|++||+.|
T Consensus 82 ~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 82 KQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 99999999999999999999999999999 333 9999999999999999999987
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=98.89 E-value=1.4e-08 Score=122.31 Aligned_cols=440 Identities=16% Similarity=0.234 Sum_probs=214.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhccchhh-hccccchhhhHHHH
Q 001964 445 VPRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILK-RWHPLAAGVAVATL 523 (990)
Q Consensus 445 ~~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~-r~~P~a~~Vaa~~L 523 (990)
..++++-+-|+.|+.+.|.+.-+.... ...+...|..|..-..+|. ..+..-.|.+= .|+ +-... +...
T Consensus 77 ~~r~~~~~~l~~sv~~~~~~~~~~~~~-------~~~l~~~l~~l~~~~~DL~-~v~~~~~~cfPp~~~-I~~~y-~~~Y 146 (566)
T PF06046_consen 77 NWRQKFFEALRESVEERFEQAEEREEN-------KSWLARHLEALRWVLEDLQ-VVKDDVVPCFPPEYD-IFNTY-VSMY 146 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccC-------chHHHHHHHHHHHHHHHHH-HHHHhCcccCCCCCh-HHHHH-HHHH
Confidence 356677777888888887733333221 2223233444442223332 22333333332 243 22222 3355
Q ss_pred HHHHHhhHHHHHHHHHhhc-HHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcchhhhhHHHHHHHHHHHH
Q 001964 524 HACYGNEIKQFISSIVELT-PDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRI 602 (990)
Q Consensus 524 h~~yg~~Lk~fl~~v~~lt-~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~iE~~~~~~v~~Wi~~~~ 602 (990)
|.+++..|..+... .+. .+++.++.=. +-|.. ++.+. + ... ...+-|-=.++....++..++....
T Consensus 147 H~~l~~~l~~l~~~--~l~~~~ll~ll~W~-~~Y~~---~m~~~-----~-l~~-~~~l~plL~~~~~~~L~~~Yl~~~~ 213 (566)
T PF06046_consen 147 HNALSDHLQELISP--DLEANDLLSLLSWV-NTYPS---IMGHP-----D-LAI-KEQLGPLLPDEKLEELEDDYLSRIQ 213 (566)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCHHHHhhheech-hhChH---hhcCC-----c-ccc-hhhccCCCChhHHHHHHHHHHHHHH
Confidence 55555555544111 122 3344444331 11111 11100 1 000 2245555567778999999999999
Q ss_pred hHHHHHHHhhhhccc--c----ccC-C-CCCCCcchHHHHHHHHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 001964 603 DRLKEWVDRNLQQED--W----NPQ-Q-NQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTK 674 (990)
Q Consensus 603 ~ki~ewV~raiq~E~--W----~P~-s-~~e~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~~~ 674 (990)
.++.+|+++++++|. | .|. + +...|++..+|||+|++|.++..-. .....++....+.+.+.+..|-..
T Consensus 214 ~~~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~---~l~~~v~~~v~~~~~~~l~~~~~~ 290 (566)
T PF06046_consen 214 KKMKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASE---SLQGKVLQRVLEELANFLKSYQDA 290 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 3 454 2 3355778999999999999999811 135667777777777777777776
Q ss_pred HHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceeeeeccHHHHHHHHHHHHH
Q 001964 675 AKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEK 754 (990)
Q Consensus 675 v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~LEk 754 (990)
+..-+ +.. +++...+. +.+ ......+.+|.-+||-......++.++.
T Consensus 291 ~~~~~------------------~~~----~~~~~~~~--~~~---------~~~~~~eyliA~~N~~~~~~~~~~~l~~ 337 (566)
T PF06046_consen 291 WQEFK------------------EEH----FKDRSSVK--PKE---------NPPGYLEYLIAVANNCLRCRDYVESLEQ 337 (566)
T ss_dssp HHHHH------------------HHH----HHHHHHHH--HCC-----------S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------------HHH----HHhhhccc--ccc---------cccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 64111 001 11110000 000 0112367789999999999999999988
Q ss_pred HHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhhhhhhhccCC-CCccchhHHHHHHHH
Q 001964 755 RVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGE-PSSSRIEPLLQELER 833 (990)
Q Consensus 755 ~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~l~~~LY~g~-V~~~RI~plL~~Ld~ 833 (990)
.+....... ....+...|+.+.....+...+-|.++.. .||.|+...|- .|+... ..+.-++.++..++.
T Consensus 338 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~L~~-~if~Dl~p~~~-~Lft~~W~~~~~~~~I~~Ti~d 408 (566)
T PF06046_consen 338 KFEEKVSQK-------YMERISSDLEELMDGFDDLAKECCQYLLE-EIFNDLKPHFK-KLFTKKWYSGEAVDTICATIED 408 (566)
T ss_dssp HHHTTS-HH-------HHHHHHHHHCTTHHHHHHHHHHHHHHHHH-HHHHCTHHHHC-TTTSGGGCTS-HHHHHHHHHHH
T ss_pred hcccccchH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH-HhCcCcCcCcchHHHHHHHHHH
Confidence 765432100 01123345666666655555554444433 36778876653 333211 223778899999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCccchHHHHHHHHHHHHhhccCCCCCcHHHHHHHH
Q 001964 834 NLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPS---RAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFS 910 (990)
Q Consensus 834 ~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGps---R~Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~a 910 (990)
.+.-+...+..+.+..++.++...++..++..|+-+..+ +.=..+=.+.|..|.+.|++||-.-| ..+.+....
T Consensus 409 Y~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~---~~~~~~~~~ 485 (566)
T PF06046_consen 409 YLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG---SKSEVKSSF 485 (566)
T ss_dssp HHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccccchH
Confidence 999999999999999999999999999999999997742 22344456899999999999999888 777888888
Q ss_pred HHHhhccccc-ccChHHHHHHHHHHhHhhcCCCCCCcCCCCCCCCCCCCCCccceeeeccccCC
Q 001964 911 ATARGVLPLF-RTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLCYRND 973 (990)
Q Consensus 911 ~~v~~vl~L~-~~~Te~LIe~~~~~~~~~~g~~~~s~~p~p~t~~~w~~~d~ntiLRVLchR~D 973 (990)
..+..++.++ ..+++.+...+..... .+| .-..+-|..||.-|.|
T Consensus 486 ~~l~~l~~ll~~~d~~~i~l~~~~l~~---------~yp---------D~~~~~v~alL~~R~D 531 (566)
T PF06046_consen 486 DVLEDLLELLRLEDPEMIKLEVSSLLQ---------KYP---------DISEEHVEALLALRGD 531 (566)
T ss_dssp HHHHHHHHHH-HS-CCCHHHHHHHHHC---------C-T---------T--SHHHHHHHCT-TT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------hCC---------CCCHHHHHHHHHhccC
Confidence 9999999988 7777777666665532 211 2345688889988875
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.025 Score=68.56 Aligned_cols=523 Identities=14% Similarity=0.178 Sum_probs=270.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhhccCCChhhHHhHHHHHHhhHH-HHHHHHhhHHhhhcCCchH----H
Q 001964 338 FTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAKATKDPEYAKILSSTLTSIMS-WAEKRLLAYHDTFDDGNLE----T 412 (990)
Q Consensus 338 f~wVlf~qfv~t~qie~dlL~aa~~~l~ev~~d~k~~~~~~y~~~l~s~l~~i~~-W~~k~L~dyH~~f~~~~~~----~ 412 (990)
-+|+=-|+| |++ ..+|.+..++++.... - ++-.-..-|+.-+..+++ -..+...||-..|..+..+ .
T Consensus 140 ~~l~~kr~y---~e~-a~~lqai~~ll~~F~~-Y---k~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~ 211 (793)
T KOG2180|consen 140 NALLSKRSY---GEA-ASPLQAILQLLNHFIA-Y---KSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALL 211 (793)
T ss_pred HHHHhhccH---HHH-HhHHHHHHHHHHHHHH-h---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccH
Confidence 345656666 442 3456666666553322 1 111122233444455544 3458899999999988852 2
Q ss_pred HHH---HHHHHHHHhhhhhccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHH
Q 001964 413 MDG---IVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAIL 489 (990)
Q Consensus 413 me~---i~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~L 489 (990)
|+. .+-|+- ++ || ++-.+.|..||+.-+.+ |.++-.. +...+++ ++. -.=
T Consensus 212 l~~l~daC~v~d----~l--ep------------svreelIkwf~~qqL~e-y~~IF~e-n~E~a~L---Dki----drR 264 (793)
T KOG2180|consen 212 LQKLSDACLVVD----AL--EP------------SVREELIKWFCSQQLEE-YEQIFRE-NEEAASL---DKL----DRR 264 (793)
T ss_pred HHHHHHHHHHHH----Hh--CC------------ccHHHHHHHHHHHHHHH-HHHHHhc-cHhhhhh---hhH----HHH
Confidence 222 222221 11 11 12234567777655432 2332221 1111100 011 111
Q ss_pred HHHHHHHHHHHHhhccchhh-hccccchhhhHHHHHHHHHhhHHHHHHHHHh-hc-HHHHHHhHHhhHHHHHHHHHhhhc
Q 001964 490 AKDVGELAIKERRVFSPILK-RWHPLAAGVAVATLHACYGNEIKQFISSIVE-LT-PDAVQVLRAADKLEKDLVQIAVED 566 (990)
Q Consensus 490 ak~i~~La~ke~~~fSPiL~-r~~P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~-lt-~~~~~vl~aad~LEk~Lv~i~~e~ 566 (990)
-.=++.+...--..|-|+|= -|| .+..... .++.-=-++|...+.+..+ +. .=.+-.++..-.+|++|-.=....
T Consensus 265 Y~wfKr~L~~fe~k~~~iFP~dW~-v~~RLt~-eFc~~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~ 342 (793)
T KOG2180|consen 265 YAWFKRLLRDFEEKWKPIFPADWH-VAYRLTI-EFCHQTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGG 342 (793)
T ss_pred HHHHHHHHHHHHHhccccCCcccc-hhHHHHH-HHHHHHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12233333344456776664 488 5555533 2222234455555555432 22 223445556668999986433210
Q ss_pred c--ccCCCCccccccCCCCcc--hhhhhHHHHHHHHHHHHhHHHHHHHhhhhccccc--cCCCCCCCc---chHHHHHHH
Q 001964 567 S--VDSDDGGKAIIREMPPYE--AEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWN--PQQNQEGFA---SSAVEVLRI 637 (990)
Q Consensus 567 ~--~~~~dg~~~l~~~~~Py~--iE~~~~~~v~~Wi~~~~~ki~ewV~raiq~E~W~--P~s~~e~hS---~SvVDiFri 637 (990)
. ...+++++-.+.+-|+|+ |-+.|.|++.-||+.+...+.+-+++-.+.++|. |.++.+-+| +|-.|+|+.
T Consensus 343 ~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~ 422 (793)
T KOG2180|consen 343 TLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVA 422 (793)
T ss_pred CCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHH
Confidence 0 111233333333445665 7899999999999999999999999999999996 766444344 788999999
Q ss_pred HHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhh-hccCCCCCcc
Q 001964 638 IDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWK-KKEKSPNSQK 716 (990)
Q Consensus 638 ~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~K-k~~~p~~~~~ 716 (990)
-+-++-+..+|-=+. .-++ ++..-+.+.++.|..++.. +.+|..|-..-+....-+.+ ....-|
T Consensus 423 Ykkcltq~~~Ls~n~-dpl~-~~~~~f~k~LreYa~kil~---------~~lP~~t~~s~g~~v~~l~~~e~~~~~---- 487 (793)
T KOG2180|consen 423 YKKCLTQCSELSENN-DPLI-ALLAVFSKWLREYAQKILL---------GNLPDTTSSSDGAAVYLLLRIEGAEYC---- 487 (793)
T ss_pred HHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHhh---------ccCCcccccccCchhhhHHHhhhhhhh----
Confidence 999999999997432 3344 4444888889999998852 33565554332211111112 111111
Q ss_pred CCCcccccccccccccCceeeeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHh
Q 001964 717 KNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEA 796 (990)
Q Consensus 717 e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~ 796 (990)
.+ +.-..-..|..||+.+|+..---.||+++.+..... ..+. ..|..-+...-.-+-..-.+
T Consensus 488 ---~~------t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~-------~~~~--vs~s~~r~~~~~~~~~s~q~ 549 (793)
T KOG2180|consen 488 ---RF------TIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDAS-------YIKG--VSFSEEREVFSSKISVSLQF 549 (793)
T ss_pred ---cc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhh--cchHHHHHHHHHHHhhhHHH
Confidence 00 000123579999999999999999999865532111 0001 11222221111111111111
Q ss_pred hh---heeeeecch---hhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHH-HHH-HHHHHHHHHHHHHHHhcC
Q 001964 797 VA---YKIVFHDLS---HVLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVR-TRI-ITDIMKASFDGFLLVLLA 868 (990)
Q Consensus 797 ~a---~rlVF~Dl~---~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r-~~v-i~~vmkAs~~~fl~VLL~ 868 (990)
+- ++.-+-|+. ..-|.+|= +|.+. +|++..+..|+......+.+.+- ++. .+.-|-+...+|-.--++
T Consensus 550 lv~D~e~a~~~~lt~msk~~~~~l~--~vgDQ--ss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~ 625 (793)
T KOG2180|consen 550 LVQDLENALDPDLTPMSKMQWQNLE--GVGDQ--SSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLN 625 (793)
T ss_pred HHHHHHHhhCcccChHHHHHHHHhc--Ccccc--chhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHH
Confidence 11 011111211 11233332 23322 35666666777766666666554 222 333344443333322222
Q ss_pred CCCCCCCCccc--hHHHHHHHHHHHHhhccCCC-C-C--c----HHHHHHHHHHHhhccc-cc--ccChHHHHHHHHHHh
Q 001964 869 GGPSRAFTRQD--SQIIEDDFKSLKDLFWANGD-G-L--P----IELIDKFSATARGVLP-LF--RTDTESLIERFRRVT 935 (990)
Q Consensus 869 GGpsR~Fs~~D--~~~iEeDl~~Lk~~F~a~Ge-G-L--p----~e~ve~~a~~v~~vl~-L~--~~~Te~LIe~~~~~~ 935 (990)
+-.|++...- .+-+--|..+||++|+..|+ + + + ...|++....++-|+. || -.+.+.-+|.|..+.
T Consensus 626 -~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~ 704 (793)
T KOG2180|consen 626 -VLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLL 704 (793)
T ss_pred -HHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhc
Confidence 1234444332 25666899999999998887 1 2 1 2345555556666665 33 356777888887765
No 7
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.67 Score=55.31 Aligned_cols=416 Identities=17% Similarity=0.208 Sum_probs=223.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhccchhhhccccchhhhHHHHHH
Q 001964 446 PRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHA 525 (990)
Q Consensus 446 ~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~~P~a~~Vaa~~Lh~ 525 (990)
..+-+-..|..|+++.|+++=++...... ...+...++ +++.-.-..+-..|-| .|| + +.+.|.
T Consensus 253 lk~f~i~~i~~sv~e~F~r~r~~yi~d~s---gelnmDfIf----~dL~~i~e~i~~~~pp---~~N-----I-~~~y~~ 316 (742)
T COG5173 253 LKDFVIKSIEVSVKEKFDRLRNEYIFDNS---GELNMDFIF----KDLSFIRENISLSFPP---FDN-----I-LTLYHN 316 (742)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhcCc---chhhhHHHH----HHHHHHHHHccccCCc---hHH-----H-HHHHHH
Confidence 33445667778999999998887664432 233444443 2222222222233322 144 2 445666
Q ss_pred HHHhhHHHHHHHHHhhcHHHHHH---hHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcch--------hhhhHHHH
Q 001964 526 CYGNEIKQFISSIVELTPDAVQV---LRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEA--------EGAIANLV 594 (990)
Q Consensus 526 ~yg~~Lk~fl~~v~~lt~~~~~v---l~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~i--------E~~~~~~v 594 (990)
-|...|-..+-+.-+.-+++... +.-.+..++.+.+ -|||-+ ++--+.++
T Consensus 317 ~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~-------------------~f~f~~dev~~~l~d~e~g~L~ 377 (742)
T COG5173 317 NYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIES-------------------KFNFIADEVGGRLLDNETGELL 377 (742)
T ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHH-------------------hCCccHHHhcccccCCcchHHH
Confidence 66665544443333344333333 3334444444432 123322 22234677
Q ss_pred HHHHHHHHhHHHHHHHhhhhcc--ccccCC-------CCCCCcchHHHHHHHHHHHHHHHhCCCCCCcccchHHHHHHHH
Q 001964 595 KMWLKTRIDRLKEWVDRNLQQE--DWNPQQ-------NQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLD 665 (990)
Q Consensus 595 ~~Wi~~~~~ki~ewV~raiq~E--~W~P~s-------~~e~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~Ls~gl~ 665 (990)
+...+-...|+.||+.+..+.| +|-.++ +.-...+--|=.|.||.|-++..-.=+ .++++--....|.
T Consensus 378 ~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn---~sdvvgiV~~~i~ 454 (742)
T COG5173 378 EKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTN---RSDVVGIVFAHIT 454 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCC---ccchhhhhHHHHH
Confidence 7788888999999999988765 555444 233456778889999999888765544 5556656666666
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccC--CCCCccCCCccc----cccc---cccc--ccCc
Q 001964 666 RCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEK--SPNSQKKNSQVA----TMNG---EISF--RVPQ 734 (990)
Q Consensus 666 ~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~--p~~~~~e~~~~~----~~~~---~~s~--~~~~ 734 (990)
..++.|++.-++.+. + .++|-.+ |-++++ .+... ++|. ...+ .+|-
T Consensus 455 ~~~tk~q~~wks~l~--e--------------------e~~kq~~~npEs~~p-~Gl~eyliav~Nd~lK~A~y~~~~~s 511 (742)
T COG5173 455 RTITKYQEIWKSNLV--E--------------------EMDKQFKSNPESSSP-AGLEEYLIAVGNDGLKIAQYITSLPS 511 (742)
T ss_pred HHHHHHHHHHHHHHH--H--------------------HHHHHhcCCCccCCc-chHHHHHHHHcCCcchHHHHHHhcch
Confidence 666888886543331 1 0111100 100000 00000 0000 0000 0111
Q ss_pred eeeeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhh----h
Q 001964 735 LCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHV----L 810 (990)
Q Consensus 735 lCVrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~----l 810 (990)
-+-.|=|=+|=-+..+.|++. .++=-.-++-+.-+|.++ +|.|++.+ |
T Consensus 512 ntfeLitseye~d~~~~lgkT-----------------------vDgfi~I~~~s~~~l~~~-----i~~d~~pa~~~iF 563 (742)
T COG5173 512 NTFELITSEYENDEVKELGKT-----------------------VDGFIDILKASNTFLAEF-----IIYDCQPAIDKIF 563 (742)
T ss_pred hhhhhhhHHHHHHHHHHhccc-----------------------chhHHHHHhhhhHHHHHH-----HHHhhhhhHHHhc
Confidence 111111222222222222222 111111222233344444 55677653 4
Q ss_pred hhhhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccch--HHHHHHHH
Q 001964 811 WDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDS--QIIEDDFK 888 (990)
Q Consensus 811 ~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~--~~iEeDl~ 888 (990)
-++-|.|++..- +.+.|+..|.-+-....+-++..+|-++--+++=+||+-|. --|+|..+|. +-|..|+.
T Consensus 564 ~~~Wy~gS~~k~----IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~---~k~a~~~~~na~~~lksD~~ 636 (742)
T COG5173 564 TDEWYGGSVTKV----IVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLG---RKRASIAEENASRTLKSDHT 636 (742)
T ss_pred CccccccchHHH----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhcchhHHHHHHHHHH
Confidence 556788877654 44455555555555556666777888888888888888874 4688888886 67889999
Q ss_pred HHHHhhccCCCCCcHHHHHHHHHHHhhcccccccChHHHHHHHHHHhHhhcCCCCCCcCCCCCCCCCCCCCCccceeeec
Q 001964 889 SLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVL 968 (990)
Q Consensus 889 ~Lk~~F~a~GeGLp~e~ve~~a~~v~~vl~L~~~~Te~LIe~~~~~~~~~~g~~~~s~~p~p~t~~~w~~~d~ntiLRVL 968 (990)
.+-++|-.-|+ |++ +.....++..++++|+.....++-.+.+.--+.+ |+ .-..-|--||
T Consensus 637 ~~y~~f~~y~d--~e~-~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiY----------------wD-~~~sli~~Il 696 (742)
T COG5173 637 KLYEMFSGYGD--PED-VKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIY----------------WD-IKKSLIKTIL 696 (742)
T ss_pred HHHHHHHhhCC--HHH-HHHHHHHHHHHHcccccCCchHHHHHHHHHHHHh----------------cc-chHHHHHHHH
Confidence 99999988887 343 4445577999999888776655544444332222 22 1234555666
Q ss_pred cccCChHHh
Q 001964 969 CYRNDEAAT 977 (990)
Q Consensus 969 chR~D~~As 977 (990)
-.|.|-.-|
T Consensus 697 k~R~Dl~~s 705 (742)
T COG5173 697 KKRQDLTES 705 (742)
T ss_pred HhhhhhHHH
Confidence 677766555
No 8
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.8 Score=56.69 Aligned_cols=348 Identities=18% Similarity=0.229 Sum_probs=195.6
Q ss_pred HHHHhhHHHHHHHHHhhcHHHHHHhH---Hhh-HHHHHHHHHhhhccccCCCCccccccCCCCcchhhhhHHHHHHHHHH
Q 001964 525 ACYGNEIKQFISSIVELTPDAVQVLR---AAD-KLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKT 600 (990)
Q Consensus 525 ~~yg~~Lk~fl~~v~~lt~~~~~vl~---aad-~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~iE~~~~~~v~~Wi~~ 600 (990)
.+|...|..++.++.+.-.+..+.++ -.. ..++.+.+.-+++. ..+-..+.|=++ ..++......
T Consensus 273 ~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~~~~~~~l~~~~~~~-------~~l~p~l~~~~v----~~Ll~~Y~~~ 341 (667)
T KOG2286|consen 273 ELYHQALSDLLRDLASEALELREILQLLAWVRNEYYTPLLQLNVDVL-------RALGPLLRPKHV----VALLDLYLER 341 (667)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcChhhhccchhh-------hhhcCccChhHH----HHHHHHHHHH
Confidence 56888888888888765544433333 222 22222322221111 111112334334 4445555555
Q ss_pred HHhHHHHHHHhhhhcc--ccccCC----CCC--CCcchHHHHHHHHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHH
Q 001964 601 RIDRLKEWVDRNLQQE--DWNPQQ----NQE--GFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYV 672 (990)
Q Consensus 601 ~~~ki~ewV~raiq~E--~W~P~s----~~e--~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~ 672 (990)
.-.++.+|+.++.+.| .|.-.+ +++ -|++=.+++|.|+.+.++.+-.. ..++.--+-..+-+||
T Consensus 342 ~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~--------~~Dl~~~~~~~~~~~v 413 (667)
T KOG2286|consen 342 ATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAAT--------SSDLSGKILRSLLSEV 413 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhh--------HHHHHHHHHHHHHHHh
Confidence 6669999999999877 565432 222 46788899999999999988766 2333333333335555
Q ss_pred HHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceee--eeccHHHHHHHHH
Q 001964 673 TKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCI--RINSFHRIKSELD 750 (990)
Q Consensus 673 ~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCV--rLNnLeyil~~Ld 750 (990)
..... +| .++--+ .++-. +.+.| -+++..|+ -.||+...+-
T Consensus 414 ~~f~~------~~----------~~~~~~---~~e~~-----~~~~~----------~~l~~y~iA~~N~~~~~a~~--- 456 (667)
T KOG2286|consen 414 PSFAR------NY----------PKAQDE---DQESH-----RREQP----------EGLREYLIANINNNLKMAML--- 456 (667)
T ss_pred HHHHH------HH----------HHhHHH---HHHhc-----hhccc----------ccHHHHHHHHHhchhHHHHH---
Confidence 44421 11 111000 01000 01111 01223332 2233332222
Q ss_pred HHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhhhhhhhccCC-CCccchhHHHH
Q 001964 751 VLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYVGE-PSSSRIEPLLQ 829 (990)
Q Consensus 751 ~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~l~~~LY~g~-V~~~RI~plL~ 829 (990)
+..-|... +......++.....+.++..|.|. ||.|+...| ..||-.. -+.+-.+-+..
T Consensus 457 -----~~~~~~~~---------d~~~~~l~~~~~i~~~~~~~l~e~-----~~~d~~~~~-~~lf~~~W~~g~~~~~Iv~ 516 (667)
T KOG2286|consen 457 -----MVNLKSKY---------DTLKGLLDGFIEIAKHGVSGLLEE-----IFLDLQPLL-NKLFTKEWCAGSVTENIVA 516 (667)
T ss_pred -----HHHHHhcc---------chhHHHhHHHHHHHHhHHHHHHHH-----HHHHHHHHH-HHHhhhhhhchhhHHHHHH
Confidence 22211111 223344455555666667776665 678887544 3333322 11255667888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHHhhccCCCCCcHHHHHHH
Q 001964 830 ELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF 909 (990)
Q Consensus 830 ~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~ 909 (990)
.|+..|.-+....... +.++|-++-.+.+-.|++-|+-+ |++..+=.+.|-.|.+.|++||---|+ +.+-.-..
T Consensus 517 T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~k---r~~~~~~~~~i~~d~~~~~~~f~~~~~--~~~~~~~~ 590 (667)
T KOG2286|consen 517 TLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKK---RASIQELIEKIKSDAETLYHFFRKYGS--DVDTLIST 590 (667)
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHhhHHHHHHHHHHhCc--chhhhhhh
Confidence 8899999988888888 99999999999999999999987 555444446667999999999988887 33333333
Q ss_pred HHHHhhcccccccChHHHHHHHHHHhHhhcCCCCCCcCCCCCCCCCCCCCCccceeeeccccCCh
Q 001964 910 SATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLCYRNDE 974 (990)
Q Consensus 910 a~~v~~vl~L~~~~Te~LIe~~~~~~~~~~g~~~~s~~p~p~t~~~w~~~d~ntiLRVLchR~D~ 974 (990)
-..+..++.++ +.|.++..+...-. .+ |+ ...+-|-+||--|.|=
T Consensus 591 ~~~l~el~~~~--d~d~~~~~~~~l~~---------~Y--------pD-~~~~~l~~il~~R~dl 635 (667)
T KOG2286|consen 591 ISTLAELISLQ--DPDLIKLEVSTLLE---------CY--------PD-IPKDHLEAILKIRGDL 635 (667)
T ss_pred hHHHHHHHhcC--ChHHHHHHHHHHHH---------HC--------CC-CcHHHHHHHHHHhcCC
Confidence 34444444333 78888887766642 22 22 3356677777777664
No 9
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.44 E-value=0.011 Score=66.80 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=141.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchh
Q 001964 623 NQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQ 702 (990)
Q Consensus 623 ~~e~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~ 702 (990)
..-+||+.+..+.+.++..++.++.+-...+. .... ++..+.+|.+.+.... +-
T Consensus 26 ~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~-~~~e----id~~v~ks~d~lL~~~---------------------l~ 79 (311)
T PF04091_consen 26 KKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQ-SSTE----IDDIVRKSLDRLLTRV---------------------LN 79 (311)
T ss_dssp --SSSBTHHHHHHHHHHHHHHHHHHHHHHTT---HHH----HHHHHHHHHHHHHHHH---------------------HH
T ss_pred eeCCCchHHHHHHHHHHHHHHHHHHHHHhccc-chHH----HHHHHHHHHHHHHHHH---------------------HH
Confidence 35689999999999999999999876532111 2233 4445577766663111 11
Q ss_pred hhhhhccCCCCCccCCCcccccccccccccCceeeeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccch
Q 001964 703 GVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELT 782 (990)
Q Consensus 703 ~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~a 782 (990)
.-.++.+. .. .+..+++=.+.|++|...-...||+.|...-+...... ...+-.....|..+
T Consensus 80 ~~L~~~i~----------------~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~-~~~~l~a~~~f~~~ 141 (311)
T PF04091_consen 80 GSLKSKIR----------------SS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAG-GHIRLKATKMFKDA 141 (311)
T ss_dssp HHHHHHHT-----------------T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---
T ss_pred HHHHHHHh----------------cC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccch-HhHhhhhHHHHHHH
Confidence 11233321 01 24667777889999999999999998765432221111 11122346788888
Q ss_pred HHHHHHHHHHHHHhhhheee-eecchhhhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001964 783 PAACVEGVQQLSEAVAYKIV-FHDLSHVLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDG 861 (990)
Q Consensus 783 r~s~~~ai~~l~e~~a~rlV-F~Dl~~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~ 861 (990)
|+.+...|- +.+-.|+- |+++-+.=|..-=..+-++.=|..++.+|+...+.+-.++...++..+..+.|+.+-+.
T Consensus 142 r~~Ae~~I~---~lv~~KIDe~lela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~ 218 (311)
T PF04091_consen 142 RKAAEKRIF---ELVNSKIDEFLELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISES 218 (311)
T ss_dssp TTHHHHHHH---HHHHHHHHHHHTT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHhhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 876665544 44444431 33333221322222223466689999999999988889999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCccchHHHHHHHHHHHHhhccC-CCCCcHHHHHHHHHHHhhccccccc
Q 001964 862 FLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWAN-GDGLPIELIDKFSATARGVLPLFRT 922 (990)
Q Consensus 862 fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~-GeGLp~e~ve~~a~~v~~vl~L~~~ 922 (990)
|+-.|++..+ +.++..-+.-++-|+..|..|--.. ..|.....+...-..+++.++|+-.
T Consensus 219 l~~~Ll~~~v-k~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s 279 (311)
T PF04091_consen 219 LLDLLLSDDV-KRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLS 279 (311)
T ss_dssp HHHHHT----------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-
T ss_pred HHHHhcCCcc-cccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 9999986654 5599999999999999999999877 1111122222333557777776543
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.37 E-value=0.083 Score=63.41 Aligned_cols=290 Identities=17% Similarity=0.219 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhh-ccccccCCCC-------CCCcchHHHHHHHHHHHHHHHhCCCCCC-cccchHHHH
Q 001964 591 ANLVKMWLKTRIDRLKEWVDRNLQ-QEDWNPQQNQ-------EGFASSAVEVLRIIDETLDAFFQLPIPM-HPALLPDLM 661 (990)
Q Consensus 591 ~~~v~~Wi~~~~~ki~ewV~raiq-~E~W~P~s~~-------e~hS~SvVDiFri~~etvd~ff~L~w~~-~~~~l~~Ls 661 (990)
...+..|++--.+-..+=++..+. .+.|++..+. -+=..|++++.++++...+.+-.|+-.. ...|+..+-
T Consensus 131 ~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iq 210 (494)
T PF04437_consen 131 PDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQ 210 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 567788988766666666666555 3578887422 2346888999999999988888777443 456775555
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceeeeecc
Q 001964 662 AGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINS 741 (990)
Q Consensus 662 ~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNn 741 (990)
-.| +.+|-..+...|-.-+.. .... . .. ...-+..++|..+|+
T Consensus 211 l~l---ld~~~~~L~~~~~~~~~~--------------------~s~~-~--------~~-----~~~~~l~~l~~~lns 253 (494)
T PF04437_consen 211 LPL---LDDYHDRLSQSLEAFESS--------------------TSTL-A--------SL-----SGDSGLERLCKILNS 253 (494)
T ss_dssp HHH---HHHTHHHHHHHHHHHHHT-------------------------S--------CE-----EHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHhhc--------------------ccch-h--------hc-----cCCchHHHHHHHHHH
Confidence 444 344444443222000000 0000 0 00 011136789999999
Q ss_pred HHHHHHHHHHHHHHHHhh---hccCC----Cccc--cccCccccccccchHHHHHHHHHHHHHhhhheee------eecc
Q 001964 742 FHRIKSELDVLEKRVITH---LRNCE----SAHA--EDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIV------FHDL 806 (990)
Q Consensus 742 Leyil~~Ld~LEk~I~~~---~~~~~----s~~~--~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlV------F~Dl 806 (990)
.+|+...|....+.+-.= ..... +... .+....-.+.|+.+.+....-.+++.+.+...++ ....
T Consensus 254 a~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y 333 (494)
T PF04437_consen 254 ANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAY 333 (494)
T ss_dssp HHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877743211 00000 0000 0011123458888877777665555555554332 1122
Q ss_pred hh-hhhhhhccC-----CCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccch
Q 001964 807 SH-VLWDGLYVG-----EPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDS 880 (990)
Q Consensus 807 ~~-~l~~~LY~g-----~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~ 880 (990)
.+ .-|...... ...++.+-|+|..|...|..|...+......++-+.|...+-+-|.--++-. ..|+....
T Consensus 334 ~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~---n~Fs~~Ga 410 (494)
T PF04437_consen 334 FKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMS---NKFSRAGA 410 (494)
T ss_dssp HT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTT---S-B-HHHH
T ss_pred hCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhc---CeeChhHH
Confidence 22 234444333 2336789999999999999999999888887777777777655554433333 37999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHhhcccccccChH
Q 001964 881 QIIEDDFKSLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTE 925 (990)
Q Consensus 881 ~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~a~~v~~vl~L~~~~Te 925 (990)
.-+..|++.|...|-. ..+.|+... ..+...+.|..++.+
T Consensus 411 ~Ql~~D~~~L~~~~~~-~~~~p~~~f----~~l~E~~~LL~L~~~ 450 (494)
T PF04437_consen 411 AQLQFDMRALFSVFSQ-YTPRPEAFF----KRLREACKLLNLPYG 450 (494)
T ss_dssp HHHHHHHHHHHTTS---TTSGG-HHH----HHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHHHHHHHh-hccCHHHHH----HHHHHHHHHcCCCCc
Confidence 9999999999999988 444465444 444444445555544
No 11
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=95.94 E-value=2.8 Score=50.60 Aligned_cols=325 Identities=14% Similarity=0.171 Sum_probs=166.9
Q ss_pred HHHHHHHHHh--hccCCC----ccchHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 001964 291 RLYEMLLEAC--FDSSYE----TSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQL 364 (990)
Q Consensus 291 rlY~~LL~~~--FD~~de----~~l~~E~dElLe~lk~tW~~LGI~q~~h~vcf~wVlf~qfv~t~qie~dlL~aa~~~l 364 (990)
++|..+-... |-++|. |-++----=+|++-|-+.. +--.-|++||+--|..+--.---|||-||--.|.+-
T Consensus 610 ~lf~~vqrltldhrlndsysclgwfspgqvfvldeycaryg---vrgchrhlcyl~~lle~aenga~idptllhysfafc 686 (1218)
T KOG3543|consen 610 HLFSDVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYG---VRGCHRHLCYLSNLLEKAENGALIDPTLLHYSFAFC 686 (1218)
T ss_pred HHHHHHHHHhhhhhcCCcchhccccCCCceeeeHHHHHHhh---hhhHHHHHHHHHHHHHhccCCcccChHHHHHHHHHH
Confidence 5577766655 555555 2222222236777788877 556789999998888877653348999999999997
Q ss_pred HH-HHhh-hccC-CChhhHH-hHHHHHHhhHHHHHHHHhhHHhhhcCCchH-HHHHHHHHHHHHhhhhhccchhhhhhcc
Q 001964 365 AE-VAKD-AKAT-KDPEYAK-ILSSTLTSIMSWAEKRLLAYHDTFDDGNLE-TMDGIVSLGVSSAKILTEDISNEYRRRR 439 (990)
Q Consensus 365 ~e-v~~d-~k~~-~~~~y~~-~l~s~l~~i~~W~~k~L~dyH~~f~~~~~~-~me~i~~v~~~~~~~l~ed~~~~~~~~~ 439 (990)
.. |.-+ ..+. .-..--| -..-+---..--.+++...+.-.|+-|.-+ .+...+++ ++++|-.|+.
T Consensus 687 ashvhgnrpdgigtvtveekerfeeikerlrvllenqithfrycfpfgrpegalkatlsl---lervlmkdiv------- 756 (1218)
T KOG3543|consen 687 ASHVHGNRPDGIGTVTVEEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSL---LERVLMKDIV------- 756 (1218)
T ss_pred HHhccCCCCCCcceeeehhHHHHHHHHHHHHHHHHhhhhceEeeccCCCcchHHHHHHHH---HHHHHHHhcC-------
Confidence 53 2211 1000 0000000 000010111122345666666666655432 33333333 5566665553
Q ss_pred cCCCCchhhHHHHHHHHHHHHH----HHHHHhhhccccccccCC----CCChHHHHHHHHHHHHHHHHHHhhccchhhhc
Q 001964 440 KGEVDVPRSRVETYIRSSLRTA----FAQRMEKADSSRRASKNQ----PNPLPVLAILAKDVGELAIKERRVFSPILKRW 511 (990)
Q Consensus 440 ~~~~~~~~~~v~~yIrsS~~~a----f~~~le~~~~~~~~~~~~----~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~ 511 (990)
..+...-|..-||..+..| |+++-+-..-+.. +... ..... ++.||.-+.++.+..-+...-.| .|
T Consensus 757 ---tpvp~eevk~virkcle~aalvnytrl~eyakiee~-m~~a~~~a~kled-~irlaelcievlqqneehhgeaf-aw 830 (1218)
T KOG3543|consen 757 ---TPVPPEEVKAVIRKCLEDAALVNYTRLCEYAKIEER-MGIAVSPAQKLED-MIRLAELCIEVLQQNEEHHGEAF-AW 830 (1218)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hccccCHHHHHHH-HHHHHHHHHHHHHhhhhhcchHH-Hh
Confidence 1122333445555444444 6665443221110 0000 00111 23344433333222211111111 12
Q ss_pred cccchhhhHHHHHHHHHhhHHHHHHHHHhhcHHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcchhhhhH
Q 001964 512 HPLAAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIA 591 (990)
Q Consensus 512 ~P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~lt~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~iE~~~~ 591 (990)
-|--..--|-.+-.+|..++-.-|+-- ..+.-..++--.-|..+| ..|+ ++....|.=++-..|.
T Consensus 831 wsdll~ehae~fwslfsvdmdsalevq---p~dswdsfplfqllndfl----r~d~--------~lcngkfhkhlq~~f~ 895 (1218)
T KOG3543|consen 831 WSDLLSEHAEIFWSLFSVDMDSALEVQ---PHDSWDSFPLFQLLNDFL----RSDS--------SLCNGKFHKHLQQQFQ 895 (1218)
T ss_pred HHHHHHHHHHHHHHHHhcccchhcccC---CCCccccchHHHHHHHHH----hhhh--------hcccchhHHHHHHHhh
Confidence 121111112233344444433222110 112222222222222222 2222 2444567778999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCC
Q 001964 592 NLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPM 652 (990)
Q Consensus 592 ~~v~~Wi~~~~~ki~ewV~raiq~E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~ 652 (990)
|+|-++++--..-|..-++|-+++|+|+|..+.. ..--|+|=-++..--..+.|.||.
T Consensus 896 plvvryvdlmessiaqsihrgfe~e~wepvkngs---atsedlfwkldalqtfv~dlhwpe 953 (1218)
T KOG3543|consen 896 PLVVRYVDLMESSIAQSIHRGFEKEKWEPVKNGS---ATSEDLFWKLDALQTFVIDLHWPE 953 (1218)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhccccccCCC---cchHhHHHHHHHHHHHHhhcCCCH
Confidence 9999999999999999999999999999998654 445699988888888889999995
No 12
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=75.94 E-value=1.7e+02 Score=34.50 Aligned_cols=115 Identities=15% Similarity=0.270 Sum_probs=73.2
Q ss_pred hhccchh-hhccccchhhhHHHHHHHHHhhHHHHHHHHH-hhc-HHHHHHhHHhhHHHHHHHHHhhhcccc---CCCCcc
Q 001964 502 RVFSPIL-KRWHPLAAGVAVATLHACYGNEIKQFISSIV-ELT-PDAVQVLRAADKLEKDLVQIAVEDSVD---SDDGGK 575 (990)
Q Consensus 502 ~~fSPiL-~r~~P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~-~lt-~~~~~vl~aad~LEk~Lv~i~~e~~~~---~~dg~~ 575 (990)
..|+.+| ..|+ .+... +..+..+=-.+|...|++.. +++ .-.+..++..-.+|++|..-....... ...+.+
T Consensus 262 ~~~~~iFP~~W~-v~~~L-~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e 339 (383)
T PF04100_consen 262 EKFANIFPPSWR-VPERL-CVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKE 339 (383)
T ss_pred hhccccCCCcCc-HHHHH-HHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3466665 3377 55555 33444445566777774432 233 566777888889999997655211000 000000
Q ss_pred c-cccCCCCcchhhhhHHHHHHHHHHHHhHHHHHHHhhhhcccc
Q 001964 576 A-IIREMPPYEAEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDW 618 (990)
Q Consensus 576 ~-l~~~~~Py~iE~~~~~~v~~Wi~~~~~ki~ewV~raiq~E~W 618 (990)
. .....|.--|-+.|.||+.-||+.+.+.+.+.+.+.++.++|
T Consensus 340 ~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 340 MKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred ccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 0 000134445899999999999999999999999999999999
No 13
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=75.61 E-value=13 Score=36.01 Aligned_cols=53 Identities=8% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhh--ccccchhhhHHHHHHHHHhhHHHHHH
Q 001964 484 PVLAILAKDVGELAIKERRVFSPILKR--WHPLAAGVAVATLHACYGNEIKQFIS 536 (990)
Q Consensus 484 ~vL~~Lak~i~~La~ke~~~fSPiL~r--~~P~a~~Vaa~~Lh~~yg~~Lk~fl~ 536 (990)
..+..||.-+..+.+-+++.|+|+|.. |-|..+.+.|-++=.+|..|++..|+
T Consensus 50 e~w~~L~eL~v~vleed~e~y~~vln~F~~~~~l~~~hAE~fWsLfa~Dm~~aLe 104 (106)
T PF06292_consen 50 EFWIRLIELCVSVLEEDKEHYAPVLNQFPWELDLGVEHAEIFWSLFAVDMDAALE 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888999999999999976 77889999999999999999998775
No 14
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=72.70 E-value=2.9e+02 Score=35.65 Aligned_cols=271 Identities=15% Similarity=0.185 Sum_probs=138.9
Q ss_pred HHHHhhHHHHHHHHhhHHhhhcCCchHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 001964 385 STLTSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQ 464 (990)
Q Consensus 385 s~l~~i~~W~~k~L~dyH~~f~~~~~~~me~i~~v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yIrsS~~~af~~ 464 (990)
.+|..=.+|. ..-.+.-+.|..+++..+..-+.=|--+-.++.+-|.|+.+... +....+|++.-+.-.+-.||+.
T Consensus 122 ~~L~EA~~w~-~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~---le~l~nrLEa~vsp~Lv~al~~ 197 (766)
T PF10191_consen 122 ETLQEADNWS-TLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQ---LEALKNRLEALVSPQLVQALNS 197 (766)
T ss_pred HHHHHHHhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHHHhhHHHHHHHHh
Confidence 3455556775 45556667777777664444332222233345555555554322 4455666666665555555333
Q ss_pred -----------HHhhhcccc-------------------ccccCC--CCChHHHHHHHHHHHHHHHHHHhhccchhhhcc
Q 001964 465 -----------RMEKADSSR-------------------RASKNQ--PNPLPVLAILAKDVGELAIKERRVFSPILKRWH 512 (990)
Q Consensus 465 -----------~le~~~~~~-------------------~~~~~~--~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~~ 512 (990)
++....... .....+ ..+.+.|-..-.++-.+...|.+--+.+|..-+
T Consensus 198 ~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~ 277 (766)
T PF10191_consen 198 RDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDES 277 (766)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 111100000 000001 234455555666666677777776666665444
Q ss_pred ccchhhhHHHHHHHHHhhHHHHHHHHHhhc---------HHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCC
Q 001964 513 PLAAGVAVATLHACYGNEIKQFISSIVELT---------PDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPP 583 (990)
Q Consensus 513 P~a~~Vaa~~Lh~~yg~~Lk~fl~~v~~lt---------~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~P 583 (990)
+ +-...+..+.+..-+.|-..+.... ....+..++...+-+-|..+..+...++ +..+ .
T Consensus 278 ~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~-~l~~-------~ 345 (766)
T PF10191_consen 278 P----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGES-NLSK-------V 345 (766)
T ss_pred h----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhcccccc-chHH-------H
Confidence 3 3344555555655555544444432 2233334444444444555444322111 1000 0
Q ss_pred cc-hhhhh---HHHHHHHHHHHHhHHHHHHHhhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCCcccchHH
Q 001964 584 YE-AEGAI---ANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPMHPALLPD 659 (990)
Q Consensus 584 y~-iE~~~---~~~v~~Wi~~~~~ki~ewV~raiq~E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~~~~~l~~ 659 (990)
.+ +..++ .+|..+.-.--...+..=+ +++..+.++..+--+.-+.|+..+|.++++.++-...|-- .--+..
T Consensus 346 ~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L-~~l~~~~~~~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~---G~~~~~ 421 (766)
T PF10191_consen 346 EELLQALFEPFKPYQQRYGELERRFLSAQL-SALDLESAELSDAVRRLEESIPKLFGLAEEAVDRCIAFTG---GYGVPG 421 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC---CccHHH
Confidence 11 12222 3333333333333333333 3445555544433345677999999999999999998873 334558
Q ss_pred HHHHHHHHHHHHHHHH
Q 001964 660 LMAGLDRCLQYYVTKA 675 (990)
Q Consensus 660 Ls~gl~~~lq~Y~~~v 675 (990)
|...|++.|.+|++..
T Consensus 422 Ll~Ald~~~~~y~~~~ 437 (766)
T PF10191_consen 422 LLKALDSIFSQYLSSL 437 (766)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999865
No 15
>PF14923 CCDC142: Coiled-coil protein 142
Probab=64.08 E-value=8.7 Score=45.85 Aligned_cols=109 Identities=20% Similarity=0.266 Sum_probs=80.5
Q ss_pred hhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHH
Q 001964 813 GLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKD 892 (990)
Q Consensus 813 ~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~ 892 (990)
+.|++.+.+.-+.|+++.+ ..+.++++--+++.+++|+.+++|--+|--+. -||.+-.--+..||..+++
T Consensus 275 S~Yv~~~v~~vl~PVl~g~--------q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kI--KFS~~GAlQL~~DF~~Vr~ 344 (450)
T PF14923_consen 275 SEYVEYVVETVLEPVLQGV--------QGLPPEAQIPALSQALTAMLEAWLDHILMHKI--KFSLQGALQLRQDFGYVRD 344 (450)
T ss_pred cHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHHHHHHHHHHHHccc--eeeHHHHHHHHHHHHHHHH
Confidence 4455555555555555432 35678889999999999999999999987633 3899989999999999999
Q ss_pred hhccCCCCCcHHHHHHH-----HHHHhhcccccccChHHHHHHH
Q 001964 893 LFWANGDGLPIELIDKF-----SATARGVLPLFRTDTESLIERF 931 (990)
Q Consensus 893 ~F~a~GeGLp~e~ve~~-----a~~v~~vl~L~~~~Te~LIe~~ 931 (990)
+-..+--||+.|+.++. ...+.+|+.+.-+....-|...
T Consensus 345 wl~~e~~~Ls~e~rq~Ll~l~v~r~~dgv~~lLlqqP~~~~~~~ 388 (450)
T PF14923_consen 345 WLESECSGLSPELRQTLLSLEVFRRCDGVGLLLLQQPGPKISMT 388 (450)
T ss_pred HHHhhhccCCHHHHHHHhccHHHHHHHHHHHHHhcCCCCccccc
Confidence 99998899999887766 5677777774333333344433
No 16
>PF12854 PPR_1: PPR repeat
Probab=42.57 E-value=34 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Q 001964 285 GFPFNLRLYEMLLEACFDSSYETSIIEEVDELMEQI 320 (990)
Q Consensus 285 g~Pln~rlY~~LL~~~FD~~de~~l~~E~dElLe~l 320 (990)
|++||+..|-.|+.+.--.. -++|+-++++++
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G----~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAG----RVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCC----CHHHHHHHHHhC
Confidence 89999999999999763322 256777787765
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.75 E-value=8e+02 Score=30.68 Aligned_cols=217 Identities=16% Similarity=0.161 Sum_probs=118.6
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCCCCCcc-cchHHHHHHHHHHHH-----------------HHHH--------HHHhcc
Q 001964 626 GFASSAVEVLRIIDETLDAFFQLPIPMHP-ALLPDLMAGLDRCLQ-----------------YYVT--------KAKSGC 679 (990)
Q Consensus 626 ~hS~SvVDiFri~~etvd~ff~L~w~~~~-~~l~~Ls~gl~~~lq-----------------~Y~~--------~v~~~~ 679 (990)
.-|.++|--||-=.+++....+-++|.|- --++.++..++.++- .|+- .+ ..|
T Consensus 352 C~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLtp~~~~d~l~d~~~Est~~l~l~as~a~~eal-rrc 430 (705)
T KOG2307|consen 352 CRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALTPEMFADPLTDENRESTPQLHLGASRAIIEAL-RRC 430 (705)
T ss_pred CchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcCchhhcccccccccccCccchhhHhHHHHHHH-HHH
Confidence 34678888899989999988888888753 335777777777665 2322 22 355
Q ss_pred CCCCCCCCCCCc-ccccccC-----cchhhhhhhccCCCCCccCCCcccccccccccccCceeeeeccHHHHHHHHHHHH
Q 001964 680 GSRNTYVPTMPA-LTRCTTG-----SKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRINSFHRIKSELDVLE 753 (990)
Q Consensus 680 g~ke~~iP~~P~-LTR~~~~-----sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrLNnLeyil~~Ld~LE 753 (990)
-+.+.|+|+.-+ +=|.+-. +.|...+++ .+..+.++|+- -++-.+|+=-++.-...++..+=
T Consensus 431 Wsddvylp~~vdKl~rltlQlllRysrwisaitn---s~gs~~skp~t---------rtqlvyv~hdd~~llqevl~ell 498 (705)
T KOG2307|consen 431 WSDDVYLPPIVDKLWRLTLQLLLRYSRWISAITN---SFGSEKSKPAT---------RTQLVYVRHDDGNLLQEVLPELL 498 (705)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhHHHHHHHh---ccCCCCCCCcc---------hhheeeeecccchHHHHHhHHHH
Confidence 555666655432 1111100 122221122 11111112211 15567888677777778888887
Q ss_pred HHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheee--ee-----cchhhh-hhhhccCC------C
Q 001964 754 KRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIV--FH-----DLSHVL-WDGLYVGE------P 819 (990)
Q Consensus 754 k~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlV--F~-----Dl~~~l-~~~LY~g~------V 819 (990)
..|...+... ....++.|..+-....+.++.++.-+--++| +. +++++. +-.+|+-. .
T Consensus 499 e~I~~kl~~~--------~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtt 570 (705)
T KOG2307|consen 499 ESIWGKLHDI--------TKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTT 570 (705)
T ss_pred HHHHhhccch--------hhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCc
Confidence 7776543221 1111222322222223345555555555544 22 444433 33567622 3
Q ss_pred CccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001964 820 SSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFL 863 (990)
Q Consensus 820 ~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl 863 (990)
.++=+..+|+-+++-+...+.-+....-+.++.++--.+...|-
T Consensus 571 hSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yy 614 (705)
T KOG2307|consen 571 HSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYY 614 (705)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 35557777777888888887777777777777776666655443
No 18
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.58 E-value=1.5e+02 Score=31.78 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHHhhccCCCCC---c
Q 001964 827 LLQELERNLLIISDTVHERVR-TRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDGL---P 902 (990)
Q Consensus 827 lL~~Ld~~L~~l~~~l~d~~r-~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeGL---p 902 (990)
.+.++.-+-..+|+...+.+| .---.++|+|.|.-+-.+.-. ..--....|+--+-+=+--|-.+|+++||.+ |
T Consensus 45 Y~~c~q~Vhk~lc~~kkc~iRl~Y~W~ELW~aL~n~L~Flmsn--e~~llak~dif~La~lIldlf~mfIs~GDafl~~p 122 (252)
T KOG4654|consen 45 YFLCFQFVHKALCSLKKCGIRLEYHWLELWRALFNFLDFLMSN--EINLLAKEDIFRLAELILDLFAMFISNGDAFLIRP 122 (252)
T ss_pred HHHHHHHHHHHHHHHHhhcceeeeHHHHHHHHHHHHHHHHHHh--HhhhcchhhHHHHHHHHHHHHHHHHhCCCeeeeCc
Confidence 345555566677888888888 566789999986522211100 0011223455445555556778999999985 8
Q ss_pred HHHHHHHHHHHh
Q 001964 903 IELIDKFSATAR 914 (990)
Q Consensus 903 ~e~ve~~a~~v~ 914 (990)
.+++|=.++-++
T Consensus 123 de~ddLfYeii~ 134 (252)
T KOG4654|consen 123 DELDDLFYEIIH 134 (252)
T ss_pred hHHHHHHHHHHH
Confidence 888888877665
No 19
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=33.84 E-value=32 Score=35.72 Aligned_cols=97 Identities=15% Similarity=0.286 Sum_probs=72.2
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHHhhccCCCC
Q 001964 821 SSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKDLFWANGDG 900 (990)
Q Consensus 821 ~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeG 900 (990)
..|+..=|..|..-|-++++++--.+++.=|+-+|...++. +-+=|.|...|--||+|.|.-
T Consensus 70 ht~VlEkLPdL~r~LPTlASvLrrKvkN~~Ir~vwesvLee------------------~GLqE~dv~aLCtFfiahgnk 131 (196)
T PF15080_consen 70 HTRVLEKLPDLVRGLPTLASVLRRKVKNKRIRVVWESVLEE------------------CGLQEGDVTALCTFFIAHGNK 131 (196)
T ss_pred HHHHHHHhhHHHhCcchHHHHHHHHhhchHHHHHHHHHHHH------------------cCCCcccHHHHHHHHHHhcch
Confidence 56777778888999999999999999999999999998864 235577889999999999873
Q ss_pred ---CcHHHHHHHHHHHhhcccccccChHHHHHHHHHHhH
Q 001964 901 ---LPIELIDKFSATARGVLPLFRTDTESLIERFRRVTL 936 (990)
Q Consensus 901 ---Lp~e~ve~~a~~v~~vl~L~~~~Te~LIe~~~~~~~ 936 (990)
.+.++-.-....+.-.+.-|-.. ..|-+-+.++.+
T Consensus 132 aehy~a~~R~~yi~dv~~mItnmVkN-qalq~~llrAvq 169 (196)
T PF15080_consen 132 AEHYAAKVRQMYIRDVTFMITNMVKN-QALQDGLLRAVQ 169 (196)
T ss_pred HhHhHHHHHHHHHhhHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 36666655566665555555432 334555666665
No 20
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=29.51 E-value=1.5e+02 Score=32.56 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=82.3
Q ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhhh
Q 001964 731 RVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVL 810 (990)
Q Consensus 731 ~~~~lCVrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~l 810 (990)
+.++=+|-.-+|-++-.+++.+...+..-.... ..+.+...|..+-.++.+--+++...+|.+++ |+....
T Consensus 3 gL~eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~-------~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l--~~~~i~ 73 (234)
T PF10474_consen 3 GLAERIVAVESLSFLARQLESLRPYLESLLPPN-------KRDFLEQFYSQTVSAVPDLREPIYKCVASRLL--DLEQIL 73 (234)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHH
Confidence 455667888899999999999988776543211 12235566666666666666666666666654 333211
Q ss_pred -------hhhhccCCCCccchhHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCc
Q 001964 811 -------WDGLYVGEPSSSRIEPLLQELERNLLIISDTVH-----ERVRTRIITDIMKASFDGFLLVLLAGGPS-RAFTR 877 (990)
Q Consensus 811 -------~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~-----d~~r~~vi~~vmkAs~~~fl~VLL~GGps-R~Fs~ 877 (990)
||-=..+.-.+.-++.+++ .+..+...+. -+..+.+...+|..++..+..+|+.|-.. +-=+.
T Consensus 74 ~~Ia~vKWdvkev~~qhs~YVd~l~~----~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~ 149 (234)
T PF10474_consen 74 NSIANVKWDVKEVMSQHSSYVDQLVQ----EFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSN 149 (234)
T ss_pred HHHHHcCCCCCCCCCccCHHHHHHHH----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 2221121112333444443 3333333331 12223455566666666666666655322 33444
Q ss_pred cchHHHHHHHHHHHHhh
Q 001964 878 QDSQIIEDDFKSLKDLF 894 (990)
Q Consensus 878 ~D~~~iEeDl~~Lk~~F 894 (990)
+.-..|.-||..+..-+
T Consensus 150 eGRalM~lD~q~~~~~l 166 (234)
T PF10474_consen 150 EGRALMQLDFQQLQNKL 166 (234)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55567777777766665
No 21
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=2.4e+02 Score=30.08 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=53.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhhccCCChhhHHhHHHHHHhhHHHHHHHHhhHHhhhcC
Q 001964 328 GMNQMLHNMCFTWVLFHRFVATGQADTDLLYAADNQLAEVAKDAKATKDPEYAKILSSTLTSIMSWAEKRLLAYHDTFDD 407 (990)
Q Consensus 328 GI~q~~h~vcf~wVlf~qfv~t~qie~dlL~aa~~~l~ev~~d~k~~~~~~y~~~l~s~l~~i~~W~~k~L~dyH~~f~~ 407 (990)
|++--=|..=++|++++.|..|..|+...+..-+..+-.-.=+.+...++.|. .-..|++|..++.+
T Consensus 37 G~dsqek~~w~~~~~~d~~~~~~dV~~~eieE~L~~~l~~EFnt~~eDDS~~~-------------ia~~L~n~f~~~~~ 103 (184)
T KOG4032|consen 37 GRDSQEKAKWITGVVVDYFTMNKDVKAREIEELLLELLGDEFNTKVEDDSLPE-------------IAQLLLNLFHDIQN 103 (184)
T ss_pred CccHHHHHHHHHhhHhhhcccccchhHHHHHHHHHHHHHHHhhccccCCCHHH-------------HHHHHHHHHHHHHc
Confidence 78888889999999999999988776655544444332212223334566664 13568888888999
Q ss_pred CchHHHHHHHH
Q 001964 408 GNLETMDGIVS 418 (990)
Q Consensus 408 ~~~~~me~i~~ 418 (990)
+||..++.+++
T Consensus 104 ~N~~~ieells 114 (184)
T KOG4032|consen 104 GNYAIIEELLS 114 (184)
T ss_pred ccHHHHHHHHH
Confidence 99997777654
No 22
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.05 E-value=2.2e+02 Score=36.45 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=67.6
Q ss_pred ceeeeeccH----HHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhh
Q 001964 734 QLCIRINSF----HRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHV 809 (990)
Q Consensus 734 ~lCVrLNnL----eyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~ 809 (990)
+.-|.+++| +|++.||+++.++|.+.. -+..|...-.-++.-++. ++-| .++| .
T Consensus 690 ~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y--------------~~Y~f~kVv~~lq~F~~~--~lSa---~Yfd---i 747 (937)
T KOG0433|consen 690 QVKFPLKDLRYIDQYMLQQLDAIVKRIIELY--------------NDYKFRKVVNDLQQFLQR--NLSA---FYFD---I 747 (937)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHH--------------HhccHHHHHHHHHHHHHH--HhhH---HHHH---H
Confidence 356778888 689999999999987753 234465555444444333 1111 1111 2
Q ss_pred hhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001964 810 LWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKAS 858 (990)
Q Consensus 810 l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs 858 (990)
.=|.||-+.+.+-.-+.+=..|-++|..|+.++.. .-+.++-+|||..
T Consensus 748 vKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaP-IlP~LaeEvwq~l 795 (937)
T KOG0433|consen 748 VKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISP-ILPHLAEEVWQHL 795 (937)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHhC
Confidence 23579999888776677777788888888877764 3467778888873
No 23
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.43 E-value=1.3e+02 Score=34.72 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=28.1
Q ss_pred hcccchhhhHHHHHHHHHHHHhhcccccceeech
Q 001964 154 MGVSETVDSRVRRALLRISAAQVGRKIESTVLPL 187 (990)
Q Consensus 154 m~Ise~~d~~~r~~llr~l~gq~g~r~~~~~LpL 187 (990)
..|.+.-.+...|-|+++|++.+++..|.+++.|
T Consensus 52 q~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 52 QLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 4566777888889999999999998888877764
No 24
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=23.14 E-value=56 Score=31.76 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.9
Q ss_pred CCChhhHHHHHHHHHHHHhh
Q 001964 46 QLSDSDLRLTAYEIFVAACR 65 (990)
Q Consensus 46 ~l~~~dlretayei~~~~~~ 65 (990)
-+|.||+-|+||+||+-=..
T Consensus 6 ~~s~De~id~AYDiFLE~A~ 25 (107)
T PRK05094 6 RLTEDETLEQAYDIFLELAA 25 (107)
T ss_pred cCCHHHHHHHHHHHHHHhhh
Confidence 58999999999999986443
No 25
>PF06222 Phage_TAC: Phage tail assembly chaperone; InterPro: IPR010411 This entry is represented by Bacteriophage HK97, Gp13 and Gp14. These are two overlapping reading frames []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These proteins include several putative tail assembly chaperones encoded by phages of Gram-negative bacteria.; PDB: 2OB9_A.
Probab=22.43 E-value=1.1e+02 Score=30.66 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 001964 845 RVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIED 885 (990)
Q Consensus 845 ~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEe 885 (990)
.++.++.+ =++|.+.=|..|||+-...|+|++.|.+.+.+
T Consensus 62 s~~ek~~R-n~~Adv~LFidVL~dE~~~rVFsd~D~~~V~~ 101 (127)
T PF06222_consen 62 SVREKAQR-NLRADVVLFIDVLLDEDGQRVFSDDDAEQVAA 101 (127)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHEE-TTS-BSS-GGGHHHHHC
T ss_pred cHHHHHHH-hhhcchhhhhHHHhcCCCCcccCcchHHHHHH
Confidence 34444444 67888888999999999999999999888775
No 26
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=21.16 E-value=5.2e+02 Score=26.71 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=66.7
Q ss_pred ccchh--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCccchHHHHHHHHHHHH---
Q 001964 821 SSRIE--PLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPS---RAFTRQDSQIIEDDFKSLKD--- 892 (990)
Q Consensus 821 ~~RI~--plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGps---R~Fs~~D~~~iEeDl~~Lk~--- 892 (990)
+.||+ --+++|...|+.....+.+......+..|-+..|+ +.--|+++.. ..++.+|++.+|+.++.+..
T Consensus 23 ~~rie~~G~lDEl~a~igla~~~~~~~~~~~~L~~iq~~L~~--l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~~~ 100 (163)
T PF01923_consen 23 DPRIEAYGTLDELNAFIGLARSEIKEEELREILERIQNELFD--LGAELATPEEDEEPEITEEDVQELEEEIDEYSEELP 100 (163)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHCTTHHHHHHHHHHHHHHHH--HHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHHS-
T ss_pred CceeeeeeeHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH--HHHHHcCCCcccccccCHHHHHHHHHHHHHHHhcCC
Confidence 44544 34778888888888888544445556667666665 4444555432 77889999999999888883
Q ss_pred ---hhccCCCCCcHH---HHHHHHHHHhhcc-cccccC--hHHHHHHHHHHhH
Q 001964 893 ---LFWANGDGLPIE---LIDKFSATARGVL-PLFRTD--TESLIERFRRVTL 936 (990)
Q Consensus 893 ---~F~a~GeGLp~e---~ve~~a~~v~~vl-~L~~~~--Te~LIe~~~~~~~ 936 (990)
.|.-.|.+.... +....+..++..+ .++... ...++.-+++++.
T Consensus 101 ~~~~Filpgg~~~~a~Lh~aRtv~RraER~~v~l~~~~~v~~~il~ylNRLSd 153 (163)
T PF01923_consen 101 PLKGFILPGGSPAAAALHVARTVCRRAERRAVRLFREEEVRPDILRYLNRLSD 153 (163)
T ss_dssp SESSCEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHH
T ss_pred CCceeEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 355556565333 3333355555444 344332 3455555566653
No 27
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=21.11 E-value=3.8e+02 Score=26.56 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=58.7
Q ss_pred CCCCccchhHHHH-HHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHH
Q 001964 817 GEPSSSRIEPLLQ-ELERNLLIISD---TVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFKSLKD 892 (990)
Q Consensus 817 g~V~~~RI~plL~-~Ld~~L~~l~~---~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~~Lk~ 892 (990)
+++.+..|+.+++ .+-.++..+|+ -++...|..+|+++=. ++.-+. -+|+|=-.+.=+.+++..|+|=...+|+
T Consensus 28 ~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Da-iv~DLe-EVLa~V~~~~aT~eQ~~Fi~Ef~~LiKN 105 (113)
T PF12290_consen 28 GDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADA-IVYDLE-EVLASVWNQKATNEQIAFIEEFIGLIKN 105 (113)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHH-HHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4456667777776 78888888887 5788999999998743 333333 3455556677788999999999999999
Q ss_pred hhcc
Q 001964 893 LFWA 896 (990)
Q Consensus 893 ~F~a 896 (990)
+|-+
T Consensus 106 LFD~ 109 (113)
T PF12290_consen 106 LFDS 109 (113)
T ss_pred hHHH
Confidence 9954
No 28
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=20.75 E-value=1.1e+03 Score=28.62 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=53.8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHhhhh-ccccccCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCC-------cccch
Q 001964 586 AEGAIANLVKMWLKTRIDRLKEWVDRNLQ-QEDWNPQQNQEGFASSAVEVLRIIDETLDAFFQLPIPM-------HPALL 657 (990)
Q Consensus 586 iE~~~~~~v~~Wi~~~~~ki~ewV~raiq-~E~W~P~s~~e~hS~SvVDiFri~~etvd~ff~L~w~~-------~~~~l 657 (990)
++.+.......|+++.........++.+= ...=....=...|.+.++.++|=++.-.-. ++++|. ...-+
T Consensus 443 l~~~e~~~~~~W~~~i~~~~~~~L~~~ll~~~~~~~~~l~VNfd~~l~~l~rEvr~l~~l--g~~iP~~~~~~~~~~~~l 520 (579)
T PF08385_consen 443 LDEYEKEIFEEWLNEIESNINSSLSQPLLKRRSDENGRLVVNFDPELLTLLREVRYLQSL--GFEIPEEILELYEQAEKL 520 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccceeeeccCCCceEEEeCCHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH
Confidence 45556778889999888888666655554 111111112366888888877766654333 555552 34455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001964 658 PDLMAGLDRCLQYYVTKA 675 (990)
Q Consensus 658 ~~Ls~gl~~~lq~Y~~~v 675 (990)
..+...|..+++.|-..+
T Consensus 521 ~~~~~~L~~~~~~yn~i~ 538 (579)
T PF08385_consen 521 YPYAESLQEIVRFYNSII 538 (579)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777776666
Done!