Query 001964
Match_columns 990
No_of_seqs 155 out of 165
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swh_A MUNC13-1, protein UNC-1 100.0 7.1E-41 2.4E-45 373.3 16.8 294 586-934 7-338 (341)
2 2fji_1 Exocyst complex compone 98.8 9.2E-08 3.2E-12 109.0 18.7 333 587-975 6-355 (399)
3 2a2f_X Exocyst complex compone 95.9 0.16 5.4E-06 56.5 16.6 272 597-920 16-316 (325)
4 3hr0_A COG4; conserved oligome 92.3 0.18 6.1E-06 54.4 6.6 218 734-976 21-255 (263)
5 3fhn_A Protein transport prote 57.7 3.3E+02 0.011 33.2 24.5 168 734-909 461-647 (706)
6 2ob9_A Tail assembly chaperone 30.7 48 0.0016 32.0 4.5 38 847-885 62-99 (130)
7 1nnv_A Hypothetical protein HI 22.5 39 0.0013 31.6 2.1 22 44-65 8-29 (110)
8 1orj_A Flagellar protein FLIS; 20.4 51 0.0018 31.6 2.7 44 289-334 81-125 (130)
9 1m9i_A Annexin VI; calcium-bin 18.8 8.2E+02 0.028 29.5 13.3 197 446-675 296-503 (672)
10 4g26_A Pentatricopeptide repea 18.4 1E+03 0.034 27.1 13.6 130 285-426 56-191 (501)
No 1
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=100.00 E-value=7.1e-41 Score=373.34 Aligned_cols=294 Identities=16% Similarity=0.279 Sum_probs=220.8
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHhhhhccccccCC---CCCCCcchHHHHHHHHHHHHHHHhCCCCCC---cccchHH
Q 001964 586 AEGAIANLVKMWLKTRIDRLKEWVDRNLQQEDWNPQQ---NQEGFASSAVEVLRIIDETLDAFFQLPIPM---HPALLPD 659 (990)
Q Consensus 586 iE~~~~~~v~~Wi~~~~~ki~ewV~raiq~E~W~P~s---~~e~hS~SvVDiFri~~etvd~ff~L~w~~---~~~~l~~ 659 (990)
.+.+|.+||++|+++..+++.+||++|++.|+|+|.+ ++.+||+||||+|++|+|+++.+.+|.||+ ...|++.
T Consensus 7 ~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~ 86 (341)
T 3swh_A 7 YPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRR 86 (341)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3679999999999999999999999999999999986 678999999999999999999999999997 4789999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCceeeee
Q 001964 660 LMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLCIRI 739 (990)
Q Consensus 660 Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lCVrL 739 (990)
|++.|.+++..||+.+.... ... .. .. +...+||.+
T Consensus 87 l~~~i~~~~~~Y~~~l~~~~----------------------~~~------~~-------~e---------~~~~~Cv~l 122 (341)
T 3swh_A 87 FAKTISNVLLQYADIVSKDF----------------------ASY------CS-------KE---------KEKVPCILM 122 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------HHH------CC-------TT---------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------Hhh------hh-------hh---------cccchhhhc
Confidence 99999999999999996222 100 00 00 022589999
Q ss_pred ccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchh---hhhhhhcc
Q 001964 740 NSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSH---VLWDGLYV 816 (990)
Q Consensus 740 NnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~---~l~~~LY~ 816 (990)
||++|++.+|.+|.+.+. |.. .....+...+..+..++..+++++...+.|+. -+++. -+-..|+.
T Consensus 123 NNie~lR~~L~~l~~~l~--~~~--------l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~-~~i~~~v~~m~~~l~~ 191 (341)
T 3swh_A 123 NNTQQLRVQLEKMFEAMG--GKE--------LDAEASGTLKELQVKLNNVLDELSHVFATSFQ-PHIEECVRQMGDILSQ 191 (341)
T ss_dssp HHHHHHHHHHHHHHHHTT--TTT--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhcc--hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 999999999999998762 211 22234456677888888899998887777653 01111 00111221
Q ss_pred --C--CC-----------CccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------------cCC
Q 001964 817 --G--EP-----------SSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVL------------LAG 869 (990)
Q Consensus 817 --g--~V-----------~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VL------------L~G 869 (990)
| .+ .+.+|+|+++|||++|..+++++++++++++++++|++++++|+.++ ++|
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~ 271 (341)
T 3swh_A 192 VKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVR 271 (341)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC---
T ss_pred hcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcc
Confidence 1 11 15679999999999999999999999999999999999999999988 689
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhhccCCCCCcHHHHHH--HHHHHhhcccccccChHHHHHHHHHH
Q 001964 870 GPSRAFTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDK--FSATARGVLPLFRTDTESLIERFRRV 934 (990)
Q Consensus 870 GpsR~Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~--~a~~v~~vl~L~~~~Te~LIe~~~~~ 934 (990)
|+.|.|+++++++++++|+.|++||||+|+|||.+.+|+ +++.++++|.||.++|+.||+.|...
T Consensus 272 ~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~~ 338 (341)
T 3swh_A 272 EEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQT 338 (341)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987 59999999999999999999998643
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.80 E-value=9.2e-08 Score=109.03 Aligned_cols=333 Identities=14% Similarity=0.179 Sum_probs=207.6
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHhhhhcc--ccc-----cCC--CCCCCcchHHHHHHHHHHHHHHHhCCCCC-Ccccc
Q 001964 587 EGAIANLVKMWLKTRIDRLKEWVDRNLQQE--DWN-----PQQ--NQEGFASSAVEVLRIIDETLDAFFQLPIP-MHPAL 656 (990)
Q Consensus 587 E~~~~~~v~~Wi~~~~~ki~ewV~raiq~E--~W~-----P~s--~~e~hS~SvVDiFri~~etvd~ff~L~w~-~~~~~ 656 (990)
++....++..|++....++.+|++|++++| +|. |.. +...|++.++|||+|++|.++.-....=. ....+
T Consensus 6 ~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v 85 (399)
T 2fji_1 6 DKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGV 85 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 456778899999999999999999999999 777 222 23558999999999999999988876522 12233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccccccCcee
Q 001964 657 LPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEISFRVPQLC 736 (990)
Q Consensus 657 l~~Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s~~~~~lC 736 (990)
+......+..-.+.|...+...+ + ++.. .-+++|+.. +.. ++++.. .......+|
T Consensus 86 ~~~~~~~L~~f~~~~~~~l~~~~---~----------~~~~--~~~~~~~~~-~~~-~~~~~~--------~~~~~e~li 140 (399)
T 2fji_1 86 VERFSDLLTKRQKNWISKISEEI---K----------KQIN--YNHKYDIDP-ESI-TPEDEC--------PGGLVEYLI 140 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---H----------HHHH--HHHTTTTGG-GSC-CTTTCC--------CSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---H----------HHhc--ccccccccc-ccc-Cccccc--------cccHHHhhh
Confidence 33333344333334444442111 0 0000 000112210 000 010000 001255677
Q ss_pred eeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheeeeecchhhhhhhhcc
Q 001964 737 IRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIVFHDLSHVLWDGLYV 816 (990)
Q Consensus 737 VrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlVF~Dl~~~l~~~LY~ 816 (990)
.-+||-......+..|++.+...+... ....+...|+.+.....+...+-+..+. ..||.|+...| ..||.
T Consensus 141 A~~Nn~~~~~e~~~~l~~~~~~~~~~~-------~~~~~~~~l~~~~~~f~~l~~~~~~~L~-~~if~dl~p~~-~~lft 211 (399)
T 2fji_1 141 AVSNDQMKAADYAVAISSKYGKLVSKV-------YEKQITNHLEGTLDGFAEVAQCSSLGLI-TLMFDDLRKPY-QEIFS 211 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHTTHHHH-TTTTS
T ss_pred hhhccHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHhCC
Confidence 788999988888888888765321110 0001123344444444333333333321 24677888544 33332
Q ss_pred CC-CCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC---ccchHHHHHHHHHHHH
Q 001964 817 GE-PSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFT---RQDSQIIEDDFKSLKD 892 (990)
Q Consensus 817 g~-V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs---~~D~~~iEeDl~~Lk~ 892 (990)
.. ..+.-++.++..++..+.-+...+++.....++.++...++..++..++. +. .|. ..=.+.|..|.+.|++
T Consensus 212 ~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~--~~~~~~~~~~~~l~~D~~~l~~ 288 (399)
T 2fji_1 212 KTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EH--SFKNKNNKFLEAMKRDFEIFYQ 288 (399)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CC--CCCCGGGHHHHHHHHHHHHHHH
T ss_pred chhcCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCCchhHHHHHHHHHHHHHHHH
Confidence 11 11227899999999999999999999999999999999999999999997 32 344 5557899999999999
Q ss_pred hhccCCCCCc--HHHHHHHHHHHhhcccccccCh-HHHHHHHHHHhHhhcCCCCCCcCCCCCCCCCCCCCCccceeeecc
Q 001964 893 LFWANGDGLP--IELIDKFSATARGVLPLFRTDT-ESLIERFRRVTLETYGSSARSRLPLPPTSGQWNPTEPNTLLRVLC 969 (990)
Q Consensus 893 ~F~a~GeGLp--~e~ve~~a~~v~~vl~L~~~~T-e~LIe~~~~~~~~~~g~~~~s~~p~p~t~~~w~~~d~ntiLRVLc 969 (990)
||-.-|.+-. .+.++.....+..+.. ...++ +.+.+.|..... .+ |+ -.++.|-.||.
T Consensus 289 ~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~---------~y--------pD-~~~~~V~aiL~ 349 (399)
T 2fji_1 289 LFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLE---------VY--------WD-SRIDLLVGILK 349 (399)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHT---------TC--------TT-CCSHHHHHHHT
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHH---------hC--------CC-CCHHHHHHHHH
Confidence 9987665432 2345666677777777 66788 888887766632 11 22 35788899999
Q ss_pred ccCChH
Q 001964 970 YRNDEA 975 (990)
Q Consensus 970 hR~D~~ 975 (990)
-|.|=.
T Consensus 350 ~R~D~~ 355 (399)
T 2fji_1 350 CRKDVS 355 (399)
T ss_dssp TCTTCC
T ss_pred hccCCC
Confidence 988643
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=95.89 E-value=0.16 Score=56.46 Aligned_cols=272 Identities=15% Similarity=0.116 Sum_probs=152.1
Q ss_pred HHHHHHhHHHHHHHhhhhccccccCC---------------------------CCCCCcchHHHHHHHHHHHHHHHhCCC
Q 001964 597 WLKTRIDRLKEWVDRNLQQEDWNPQQ---------------------------NQEGFASSAVEVLRIIDETLDAFFQLP 649 (990)
Q Consensus 597 Wi~~~~~ki~ewV~raiq~E~W~P~s---------------------------~~e~hS~SvVDiFri~~etvd~ff~L~ 649 (990)
..+--..+..+=+.+++++|++.|+- ..-+||..|.++.+.++..++.++..-
T Consensus 16 Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~F~ 95 (325)
T 2a2f_X 16 YNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFMYACMKFA 95 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444556677888888866 123688899999998888888877532
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccCCCCCccCCCcccccccccc
Q 001964 650 IPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPALTRCTTGSKFQGVWKKKEKSPNSQKKNSQVATMNGEIS 729 (990)
Q Consensus 650 w~~~~~~l~~Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~sk~~~~~Kk~~~p~~~~~e~~~~~~~~~~~s 729 (990)
=. ...- ..-++..+.+|.+.+.... +-...++.+... .
T Consensus 96 ~~-~~~~----~~eidd~lrks~d~LL~~~---------------------v~~~L~~~i~~~----------------~ 133 (325)
T 2a2f_X 96 EE-LTLS----PNEVAAMVRKAANLLLTRS---------------------FSGCLSVVFRQP----------------S 133 (325)
T ss_dssp HH-TTCC----HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHTCT----------------T
T ss_pred Hh-cccC----cchHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhcc----------------C
Confidence 10 0001 1223444455655543110 000112222110 1
Q ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHhhhccCCCccccccCccccccccchHHHHHHHHHHHHHhhhheee-eecchh
Q 001964 730 FRVPQLCIRINSFHRIKSELDVLEKRVITHLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQLSEAVAYKIV-FHDLSH 808 (990)
Q Consensus 730 ~~~~~lCVrLNnLeyil~~Ld~LEk~I~~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~l~e~~a~rlV-F~Dl~~ 808 (990)
.+..+..=.+=|++|...-...||+-|..- ..+++. . .-.....|..+|+++.+.| .+.+..|+- |.++-+
T Consensus 134 ~~l~qi~Qi~iNl~~le~ac~~le~~l~~~-~~~~~~-~---~l~a~~~f~~~r~~Ae~~I---~~~v~~KIDdfl~la~ 205 (325)
T 2a2f_X 134 ITLTQLIQIIIDTQYLEKAGPFLDEFVCHM-TNTERS-V---SQTPSAMFHVARQDAEKQV---GLRICSKIDEFFELSA 205 (325)
T ss_dssp SCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HTCCC-----------CCSCCCTTHHHHHH---HHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcc-c---chhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 112233334557777777777788877653 222211 1 1124567888887766553 333344431 222221
Q ss_pred hhhhhhccCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHH
Q 001964 809 VLWDGLYVGEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIEDDFK 888 (990)
Q Consensus 809 ~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEeDl~ 888 (990)
.=|..-=..+-++.=|..++.+|+..... -..+...++..+..+.|+.+=+.++-.|++.+. +.|+..-+.-++-|++
T Consensus 206 yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~v-k~in~~av~~~~~Dv~ 283 (325)
T 2a2f_X 206 YDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDV-KQISTGALTQINLDLM 283 (325)
T ss_dssp TTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCTTHHHHHHHHH
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhcCHHHHHHHHHHHH
Confidence 11221111223455599999999999994 678999999999999999999999998886433 5599999999999999
Q ss_pred HHHHhhccCC-CCCcHHHHHHHHHHHhhccccc
Q 001964 889 SLKDLFWANG-DGLPIELIDKFSATARGVLPLF 920 (990)
Q Consensus 889 ~Lk~~F~a~G-eGLp~e~ve~~a~~v~~vl~L~ 920 (990)
.|.+|=-.++ .|+....+...-..+++.++|+
T Consensus 284 ~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll 316 (325)
T 2a2f_X 284 QCEFFAASEPVPGLKEGELSKYFLRNRQLLDLL 316 (325)
T ss_dssp HHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHH
Confidence 9999953332 2453222333345556655544
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=92.28 E-value=0.18 Score=54.43 Aligned_cols=218 Identities=15% Similarity=0.224 Sum_probs=135.3
Q ss_pred ceeeeeccHHHHHHHHHHH----HHHHHhhhccCCCccc-c-ccCc---ccccccc-chHHHHHHHHHHHH-Hhhhheee
Q 001964 734 QLCIRINSFHRIKSELDVL----EKRVITHLRNCESAHA-E-DFSN---GLGKKFE-LTPAACVEGVQQLS-EAVAYKIV 802 (990)
Q Consensus 734 ~lCVrLNnLeyil~~Ld~L----Ek~I~~~~~~~~s~~~-~-~~~~---~~~~~F~-~ar~s~~~ai~~l~-e~~a~rlV 802 (990)
.-||-||||+-...-+.+| |+.+...+........ . .+.. .+.. |. ..+..++++|++|. .++..|+-
T Consensus 21 ~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~-~~~k~~~ll~~gi~~Lf~~~ikprLr 99 (263)
T 3hr0_A 21 SFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAA-VSNKFRDLLQEGLTELNSTAIKPQVQ 99 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4599999998555555544 4444333321110000 0 0000 1111 21 23566888888886 57776652
Q ss_pred -----eecchhhhhhhhcc-CCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 001964 803 -----FHDLSHVLWDGLYV-GEPSSSRIEPLLQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLAGGPSRAFT 876 (990)
Q Consensus 803 -----F~Dl~~~l~~~LY~-g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs 876 (990)
|.|..+.+-+.=|. -+..+.-+..+...+++.|.-+..+++....+.++.-+...+...++..++.+ -|+
T Consensus 100 ~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~~----~fn 175 (263)
T 3hr0_A 100 PWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKS----TFN 175 (263)
T ss_dssp HHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTC----CBC
T ss_pred HHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHhC----CcC
Confidence 44443333111111 01224457788888999999999999999999999999999998999999873 388
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHhhcccccccChHHHHHHHHHHhHhhcCCCCCCcCCCCCCCCCC
Q 001964 877 RQDSQIIEDDFKSLKDLFWANGDGLPIELIDKFSATARGVLPLFRTDTESLIERFRRVTLETYGSSARSRLPLPPTSGQW 956 (990)
Q Consensus 877 ~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~a~~v~~vl~L~~~~Te~LIe~~~~~~~~~~g~~~~s~~p~p~t~~~w 956 (990)
+=-.-.+|.|++.|-.||+.-|. ..+-|+. ..+.+|+.++.++...=+.+| .....| ...|
T Consensus 176 ~lGal~LdrDvr~li~~~~~~~~---~~lRekF-~RL~QI~~lLnle~~eev~d~---~~~~~~------------~~~W 236 (263)
T 3hr0_A 176 RLGGLQFDKELRSLIAYLTTVTT---WTIRDKF-ARLSQMATILNLERVTEILDY---WGPNSG------------PLTW 236 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC---TTHHHHT-HHHHHHHHHHTCSSGGGGGGT---SGGGGT------------TCCC
T ss_pred chhHHHHHHHHHHHHHHHHhccc---hhhhHHH-HHHHHHHHHHcCCChHHHHHH---hcccCC------------Cccc
Confidence 88889999999999999988443 2234444 666778877777654311111 000001 1246
Q ss_pred CCCCccceeeeccccCChHH
Q 001964 957 NPTEPNTLLRVLCYRNDEAA 976 (990)
Q Consensus 957 ~~~d~ntiLRVLchR~D~~A 976 (990)
.-.|+-+-|||..|.|-..
T Consensus 237 -~Ls~~E~r~il~lRvDf~~ 255 (263)
T 3hr0_A 237 -RLTPAEVRQVLALRIDFRS 255 (263)
T ss_dssp -CSCHHHHHHHHTTBTTSCH
T ss_pred -cCCHHHHHHHHHhhccCCH
Confidence 3678899999999988543
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=57.66 E-value=3.3e+02 Score=33.19 Aligned_cols=168 Identities=12% Similarity=0.159 Sum_probs=99.6
Q ss_pred ceeeeeccHHHHHHHHHHHHHHHH--hhhccCCCccccccCccccccccchHHHHHHHHHH-HHHhhhheee------ee
Q 001964 734 QLCIRINSFHRIKSELDVLEKRVI--THLRNCESAHAEDFSNGLGKKFELTPAACVEGVQQ-LSEAVAYKIV------FH 804 (990)
Q Consensus 734 ~lCVrLNnLeyil~~Ld~LEk~I~--~~~~~~~s~~~~~~~~~~~~~F~~ar~s~~~ai~~-l~e~~a~rlV------F~ 804 (990)
+.|..||+|.|+...|...-+.+- +=|...+. . .....++.|+.+-+....-..+ +-+.+...++ +.
T Consensus 461 ~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~---~-t~s~~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK 536 (706)
T 3fhn_A 461 QTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNS---T-ESKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLR 536 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH---H-TTCCCSCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhc---c-cCcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999998854433322110 00111110 0 1123468899988888777776 6555544332 11
Q ss_pred cchh-hhhhhhccCC--------CCccchhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001964 805 DLSH-VLWDGLYVGE--------PSSSRIEPLLQELERNLLIISDT-VHERVRTRIITDIMKASFDGFLLVLLAGGPSRA 874 (990)
Q Consensus 805 Dl~~-~l~~~LY~g~--------V~~~RI~plL~~Ld~~L~~l~~~-l~d~~r~~vi~~vmkAs~~~fl~VLL~GGpsR~ 874 (990)
...+ .-|..+-.++ ..++.+.|+|..|...|..|... +......++-+.+...+-+=|.--+|- ...
T Consensus 537 ~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~---~nk 613 (706)
T 3fhn_A 537 NYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK---LNK 613 (706)
T ss_dssp HHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT---TSC
T ss_pred HHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCc
Confidence 2212 1244332211 12667999999999999999888 577776665555555543322222222 247
Q ss_pred CCccchHHHHHHHHHHHHhhccCCCCCcHHHHHHH
Q 001964 875 FTRQDSQIIEDDFKSLKDLFWANGDGLPIELIDKF 909 (990)
Q Consensus 875 Fs~~D~~~iEeDl~~Lk~~F~a~GeGLp~e~ve~~ 909 (990)
|+.+...-+.-|++.|...|- -++|-|.....+.
T Consensus 614 FS~~Ga~Qf~~D~~~L~~v~~-lp~~~~~~~~~~L 647 (706)
T 3fhn_A 614 FNQNGLNQFLHDFKSLSSILS-LPSHATNYKCMSL 647 (706)
T ss_dssp BCHHHHHHHHHHHHHHHTTSC-CCTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhc-CCCcchhhHHHHH
Confidence 999999999999999999998 6666644444444
No 6
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=30.69 E-value=48 Score=31.98 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 001964 847 RTRIITDIMKASFDGFLLVLLAGGPSRAFTRQDSQIIED 885 (990)
Q Consensus 847 r~~vi~~vmkAs~~~fl~VLL~GGpsR~Fs~~D~~~iEe 885 (990)
+.+.++ -++|-+-.|..||++-+.-|.|++.|.+.+-+
T Consensus 62 ~ek~~r-n~rA~~vlf~~vL~DE~g~rvFsd~D~~~v~~ 99 (130)
T 2ob9_A 62 SEKAHR-NLCADVVLFIDVLCDTDKQPVFSVDEEEQVRE 99 (130)
T ss_dssp HHHHHH-HHHHHHHHHHHHEECTTSCBSSCGGGHHHHHT
T ss_pred HHHHHH-hccccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 455544 78899999999999999999999999877654
No 7
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=22.51 E-value=39 Score=31.59 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhh
Q 001964 44 LTQLSDSDLRLTAYEIFVAACR 65 (990)
Q Consensus 44 ~~~l~~~dlretayei~~~~~~ 65 (990)
++-+|.||+-|+||+||+-=..
T Consensus 8 ~~~~t~De~id~AYDiFLE~A~ 29 (110)
T 1nnv_A 8 IKKLDPDTAIDIAYDIFLEMAG 29 (110)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCS
T ss_pred eecCCHHHHHHHHHHHHHHhhh
Confidence 3479999999999999986543
No 8
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=20.45 E-value=51 Score=31.64 Aligned_cols=44 Identities=16% Similarity=0.471 Sum_probs=33.9
Q ss_pred CHHH-HHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHH
Q 001964 289 NLRL-YEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLH 334 (990)
Q Consensus 289 n~rl-Y~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h 334 (990)
|... |..+...+=.+..+...++|+..+|+.|+-+|.. |.+..|
T Consensus 81 nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~lreaW~~--i~~~~~ 125 (130)
T 1orj_A 81 NLDTIYTIILNTLVKVDKTKEELQKILEILKDLREAWEE--VKKKVH 125 (130)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 5554 9988888855566678999999999999999993 444443
No 9
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=18.78 E-value=8.2e+02 Score=29.46 Aligned_cols=197 Identities=13% Similarity=0.178 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHHHHHhhccchhhhccccchhhhHHHHHH
Q 001964 446 PRSRVETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPVLAILAKDVGELAIKERRVFSPILKRWHPLAAGVAVATLHA 525 (990)
Q Consensus 446 ~~~~v~~yIrsS~~~af~~~le~~~~~~~~~~~~~e~~~vL~~Lak~i~~La~ke~~~fSPiL~r~~P~a~~Vaa~~Lh~ 525 (990)
++..+...|++-.+--|+++|-........ ...+|.+-+++++--.-.....-...+.|-+....+......|-.|+.
T Consensus 296 yg~sL~~~I~~dtsGdY~~~LlaL~~~~~~--~~g~~~~~~a~~~~~~~~~~~~~~~~~~~ti~~~~~f~~~~Da~~L~k 373 (672)
T 1m9i_A 296 YEKSLYSMIKNDTSGEYKKTLLKLSGGDDD--AAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKALRK 373 (672)
T ss_dssp SSSCHHHHHHTTCCHHHHHHHHHHHCSCTT--SSCCCCHHHHHHHHHHHHHHHHCCCCCCCSCCCCTTCCHHHHHHHHHH
T ss_pred hCCcHHHHHHHhcCCcHHHHHHHHhCCccc--cccccCCccccccccccccccccccCCCCCcCCCCCCChHHHHHHHHH
Confidence 445578888888888899988775543211 123666665666543333211111223333322211122333445555
Q ss_pred HH---HhhHHHHHHHHHhhcHHHHHHhHHhhHHHHHHHHHhhhccccCCCCccccccCCCCcchhhhhHHHHHHHHHHHH
Q 001964 526 CY---GNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKMWLKTRI 602 (990)
Q Consensus 526 ~y---g~~Lk~fl~~v~~lt~~~~~vl~aad~LEk~Lv~i~~e~~~~~~dg~~~l~~~~~Py~iE~~~~~~v~~Wi~~~~ 602 (990)
.+ |.+=+..++=+.+.++.-.+.+..+- +..+ |+.|+..+. -++.+-|..+|..|+..-.
T Consensus 374 A~kG~GtDE~~iI~IL~~rs~~QR~~I~~~Y-----------~~~~-----gkdL~~~Lk-selsG~fe~~i~~l~~~p~ 436 (672)
T 1m9i_A 374 AMKGLGTDEDTIIDIITHRSNVQRQQIRQTF-----------KSHF-----GRDLMTDLK-SEISGDLARLILGLMMPPA 436 (672)
T ss_dssp HHSSSSCCHHHHHHHHHTSCHHHHHHHHHHH-----------HHHH-----SSCHHHHHH-HHCCTHHHHHHHHHHSCHH
T ss_pred HhcCCCCCHHHHHHHHhcCCHHHHHHHHHHH-----------HHHh-----CchHHHHHH-HHcCCCHHHHHHHHCCCHH
Confidence 43 44444444444444433333333221 1111 222221111 1244678999999999999
Q ss_pred hHHHHHHHhhhhccccccCCCCCCCcchHHHHHH--------HHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 001964 603 DRLKEWVDRNLQQEDWNPQQNQEGFASSAVEVLR--------IIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTK 674 (990)
Q Consensus 603 ~ki~ewV~raiq~E~W~P~s~~e~hS~SvVDiFr--------i~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~~~ 674 (990)
+.-..|+..|++.-. .++ ..++||+. .+++.-...|+=. +-.++..-++.-|++-+..
T Consensus 437 ~~DA~~l~~A~kg~g-----Tde---~~LiEIL~tRsn~ei~~ik~aY~~~y~~s------Le~di~~dtsG~~~~llv~ 502 (672)
T 1m9i_A 437 HYDAKQLKKAMEGAG-----TDE---KALIEILATRTNAEIRAINEAYKEDYHKS------LEDALSSDTSGHFRRILIS 502 (672)
T ss_dssp HHHHHHHHHHHSSSS-----CCH---HHHHHHHHHSCHHHHHHHHHHHHHHHSSC------HHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-----CCH---HHHHHhhhcCCHHHHHHHHHHHHHHHCcC------HHHHHHhccchHHHHHHHH
Confidence 999999999997531 222 35777763 3555555555533 4445554444455555444
Q ss_pred H
Q 001964 675 A 675 (990)
Q Consensus 675 v 675 (990)
+
T Consensus 503 L 503 (672)
T 1m9i_A 503 L 503 (672)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=18.41 E-value=1e+03 Score=27.09 Aligned_cols=130 Identities=11% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHh-----hccCCCccchHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 001964 285 GFPFNLRLYEMLLEAC-----FDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHNMCFTWVLFHRFVATGQADTDLLYA 359 (990)
Q Consensus 285 g~Pln~rlY~~LL~~~-----FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h~vcf~wVlf~qfv~t~qie~dlL~a 359 (990)
|++||+..|-.||.+| .+-....--.+++.++++.++.. |+.+ |+.---.+.+-|+..| .++.
T Consensus 56 Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----G~~P---d~~tyn~lI~~~~~~g-----~~~~ 123 (501)
T 4g26_A 56 GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----KVVP---NEATFTNGARLAVAKD-----DPEM 123 (501)
T ss_dssp TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----TCCC---CHHHHHHHHHHHHHHT-----CHHH
T ss_pred CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----CCCC---CHHHHHHHHHHHHhcC-----CHHH
Q ss_pred HHHHHHHHHhhhccCCChhhHHhHHHHH-HhhHHHHHHHHhhHHhhhcCCchHHHHHHHHHHHHHhhh
Q 001964 360 ADNQLAEVAKDAKATKDPEYAKILSSTL-TSIMSWAEKRLLAYHDTFDDGNLETMDGIVSLGVSSAKI 426 (990)
Q Consensus 360 a~~~l~ev~~d~k~~~~~~y~~~l~s~l-~~i~~W~~k~L~dyH~~f~~~~~~~me~i~~v~~~~~~~ 426 (990)
|+.++++.....-.+....|..++.+.. ..-..=+.+.+...-+.=..-+..+...++....-.++.
T Consensus 124 A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Done!