Query 001964
Match_columns 990
No_of_seqs 155 out of 165
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 06:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001964.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001964hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bo9a_ a.65.1.1 (A:) Annexin 26.6 7.8 0.00057 31.3 0.5 27 958-985 19-45 (73)
2 d1nnva_ d.17.7.1 (A:) Hypothet 23.7 21 0.0015 31.1 2.8 21 44-64 5-25 (107)
3 d1orja_ a.24.19.1 (A:) Flagell 20.6 24 0.0017 31.2 2.7 44 289-334 80-124 (126)
4 d1noga_ a.25.2.2 (A:) Hypothet 20.1 1.7E+02 0.012 26.4 8.7 106 828-935 10-128 (149)
5 d2fvja1 a.123.1.1 (A:207-477) 13.5 2.6E+02 0.019 27.1 8.9 89 211-335 177-265 (271)
6 d2es9a1 a.247.1.1 (A:11-107) H 12.6 1.6E+02 0.012 24.1 5.6 73 637-721 2-85 (97)
7 d1lhta_ a.1.1.2 (A:) Myoglobin 12.2 4.1E+02 0.03 22.8 11.2 62 395-464 86-148 (153)
8 d2p54a1 a.123.1.1 (A:202-468) 12.1 2.8E+02 0.02 26.8 8.7 90 210-335 172-261 (267)
9 d2b50b1 a.123.1.1 (B:211-475) 12.0 3E+02 0.022 26.5 8.9 88 211-334 173-260 (265)
10 d1a6ma_ a.1.1.2 (A:) Myoglobin 11.8 2.8E+02 0.021 23.8 7.9 30 317-346 7-36 (151)
No 1
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.61 E-value=7.8 Score=31.29 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCCccceeeeccccCChHHhHHHHHHhC
Q 001964 958 PTEPNTLLRVLCYRNDEAATRFLKKTYN 985 (990)
Q Consensus 958 ~~d~ntiLRVLchR~D~~AskFLKk~~~ 985 (990)
++|..+|.||||+|+...- .-+++.|+
T Consensus 19 Gtde~~li~Il~~rs~~~l-~~i~~~Y~ 45 (73)
T d1bo9a_ 19 GVDEATIIDILTKRNNAQR-QQIKAAYL 45 (73)
T ss_dssp SCCSSSHHHHHHHSCSTTH-HHHHHHHH
T ss_pred CCCHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence 3688999999999977643 33555553
No 2
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}
Probab=23.72 E-value=21 Score=31.10 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.0
Q ss_pred CCCCChhhHHHHHHHHHHHHh
Q 001964 44 LTQLSDSDLRLTAYEIFVAAC 64 (990)
Q Consensus 44 ~~~l~~~dlretayei~~~~~ 64 (990)
+..+|.||+-++||+||+-=.
T Consensus 5 ~~~~t~De~id~AYDiFLElA 25 (107)
T d1nnva_ 5 IKKLDPDTAIDIAYDIFLEMA 25 (107)
T ss_dssp CCCCCHHHHHHHHHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHHhh
Confidence 457999999999999998644
No 3
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=20.60 E-value=24 Score=31.21 Aligned_cols=44 Identities=16% Similarity=0.485 Sum_probs=32.1
Q ss_pred CHHH-HHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHH
Q 001964 289 NLRL-YEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLH 334 (990)
Q Consensus 289 n~rl-Y~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h 334 (990)
|..- |..+...+.......--++|+-.+|+.|+-+|+ +|.+-+|
T Consensus 80 nL~~lY~~~~~~L~~a~~~~~~i~e~~~il~~l~eaW~--~i~~~~~ 124 (126)
T d1orja_ 80 NLDTIYTIILNTLVKVDKTKEELQKILEILKDLREAWE--EVKKKVH 124 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 5544 999988886654443457999999999999998 4444444
No 4
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.12 E-value=1.7e+02 Score=26.37 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCccchHHHHHHHHHHH-------HhhccCCC
Q 001964 828 LQELERNLLIISDTVHERVRTRIITDIMKASFDGFLLVLLA-GGPSRAFTRQDSQIIEDDFKSLK-------DLFWANGD 899 (990)
Q Consensus 828 L~~Ld~~L~~l~~~l~d~~r~~vi~~vmkAs~~~fl~VLL~-GGpsR~Fs~~D~~~iEeDl~~Lk-------~~F~a~Ge 899 (990)
+++|+..++.......+..-...+..|-+..|+ +---|+ .+..+.++.++++.+|+++..+. .|...+|.
T Consensus 10 vDELns~iGla~~~~~~~~~~~~L~~IQ~~Lf~--lga~lA~~~~~~~i~~~~v~~LE~~id~~~~~lp~l~~FiLPGG~ 87 (149)
T d1noga_ 10 IDELNSFIGYALVLSRWDDIRNDLFRIQNDLFV--LGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGS 87 (149)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHHCCCCSCBCSCSS
T ss_pred HHHHHHHHHHHHHccCchhHHHHHHHHHHHHHH--hhHHHhcccccccccHHHHHHHHHHHHHHHhhhccccceeecCCc
Confidence 567777777665444333333345555555554 122222 34457799999999998766654 46667776
Q ss_pred CC--cHHHHHHHHHHHhhcc-cccccC--hHHHHHHHHHHh
Q 001964 900 GL--PIELIDKFSATARGVL-PLFRTD--TESLIERFRRVT 935 (990)
Q Consensus 900 GL--p~e~ve~~a~~v~~vl-~L~~~~--Te~LIe~~~~~~ 935 (990)
.. -..+....+.++++.+ .|.... .+.++.=.++++
T Consensus 88 ~~~a~lH~aRtv~RRaER~lv~l~~~~~v~~~~~~YlNRLS 128 (149)
T d1noga_ 88 VESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLS 128 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 33 2334444466555544 444322 344444345554
No 5
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=2.6e+02 Score=27.09 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhCCCCCCCcCChHHHHHHHHhhhhcCCCCcccCchhhHHHHHhhhhhhcccCCCCCCCCcccccCCCCCH
Q 001964 211 TLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISAALDRPIETGRNNESMQVLRSTVISLASRSDGSLNEPCHWADGFPFNL 290 (990)
Q Consensus 211 ql~~leagL~~~P~~pl~ks~~~~~~Lr~~~~~s~~~~~~~~~~~e~~r~l~~~~~~La~rs~~~~~e~~hwa~g~Pln~ 290 (990)
|.-+|-|+++++|+.|.-+....+.++++. ..++|...... + ||-++
T Consensus 177 E~alLkAIvLf~pd~~gL~~~~~Ve~lQ~~----------------~~~aL~~y~~~-------------~----~p~~~ 223 (271)
T d2fvja1 177 DLAIFIAVIILSGDRPGLLNVKPIEDIQDN----------------LLQALELQLKL-------------N----HPESS 223 (271)
T ss_dssp HHHHHHHHHHTCTTSTTCSCHHHHHHHHHH----------------HHHHHHHHHHH-------------H----STTST
T ss_pred HHHHHHHHHHHcccccCCccHHHHHHHHHH----------------HHHHHHHHHHH-------------h----CCCch
Confidence 445688999999998743332234555554 33444443311 0 45556
Q ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHHH
Q 001964 291 RLYEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHN 335 (990)
Q Consensus 291 rlY~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h~ 335 (990)
..|-+||..+-+++. +..+..|.+..+|.+|..+-+++.+-.
T Consensus 224 ~rf~kLL~~Lp~LR~---l~~~~~e~l~~~k~~~~~~~l~pLl~E 265 (271)
T d2fvja1 224 QLFAKLLQKMTDLRQ---IVTEHVQLLQVIKKTETDMSLHPLLQE 265 (271)
T ss_dssp THHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCSSCCCHHHHH
T ss_pred hHHHHHHHHhHHHHH---HHHHHHHHHHHHhccCCCCCccHHHHH
Confidence 679999998877764 777888899999999987667665443
No 6
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=12.62 E-value=1.6e+02 Score=24.12 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCCCcccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc--ccccccCcchh-------hhhhh
Q 001964 637 IIDETLDAFFQLPIPMHPALLPDLMAGLDRCLQYYVTKAKSGCGSRNTYVPTMPA--LTRCTTGSKFQ-------GVWKK 707 (990)
Q Consensus 637 i~~etvd~ff~L~w~~~~~~l~~Ls~gl~~~lq~Y~~~v~~~~g~ke~~iP~~P~--LTR~~~~sk~~-------~~~Kk 707 (990)
.|+..+|.+-+|+... ..-++.-+.-.+++-+|+..+ . +|-.|. ..|-+|+ .|- --|-+
T Consensus 2 vIdKALDFIg~M~~Sa--s~P~sM~ESTAKGifKyLkel--G-------VPas~~dv~aRg~qe-gWn~gFT~K~~gWA~ 69 (97)
T d2es9a1 2 AIEKALDFIGGMNTSA--SVPHSMDESTAKGILKYLHDL--G-------VPVSPEVVVARGEQE-GWNPEFTKKVAGWAE 69 (97)
T ss_dssp HHHHHHHHHHTSCTTC--SSCCHHHHHHHHHHHHHHHHT--T-------CCCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccCC--CCCCccchHHHHHHHHHHHHc--C-------CCCCHHHHHHhcccc-cCChhHHHHHHHHHH
Confidence 3678899999998653 222334444445558887766 2 366664 5666665 552 23755
Q ss_pred ccCC-CCCccCCC-cc
Q 001964 708 KEKS-PNSQKKNS-QV 721 (990)
Q Consensus 708 ~~~p-~~~~~e~~-~~ 721 (990)
+.++ .++...+| ||
T Consensus 70 k~~sGerivIKnPEyF 85 (97)
T d2es9a1 70 KVASGNRILIKNPEYF 85 (97)
T ss_dssp HHHTTCCCCCSSGGGS
T ss_pred HhccCCeeeecChHHH
Confidence 5433 35555566 55
No 7
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta caretta) [TaxId: 8467]}
Probab=12.21 E-value=4.1e+02 Score=22.78 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=35.7
Q ss_pred HHHHhhHHhhhcCCchHHHHHHHH-HHHHHhhhhhccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHH
Q 001964 395 EKRLLAYHDTFDDGNLETMDGIVS-LGVSSAKILTEDISNEYRRRRKGEVDVPRSRVETYIRSSLRTAFAQ 464 (990)
Q Consensus 395 ~k~L~dyH~~f~~~~~~~me~i~~-v~~~~~~~l~ed~~~~~~~~~~~~~~~~~~~v~~yIrsS~~~af~~ 464 (990)
.+.|..-|.....-...-++.+.. +...+.+.++.+-+ .. +..+-+.+-.+|..-+.+.|++
T Consensus 86 l~~Lg~~H~~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t--~e------~~~AW~k~~~~i~~~l~~~y~e 148 (153)
T d1lhta_ 86 LKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFG--AD------SQAAMKKALELFRNDMASKYKE 148 (153)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHCTTTCC--HH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHcCccCC--HH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 377888896533222234566554 33444566664322 11 3356667777888888877775
No 8
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.09 E-value=2.8e+02 Score=26.79 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=57.4
Q ss_pred HhHHHHHHHHhhCCCCCCCcCChHHHHHHHHhhhhcCCCCcccCchhhHHHHHhhhhhhcccCCCCCCCCcccccCCCCC
Q 001964 210 RTLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISAALDRPIETGRNNESMQVLRSTVISLASRSDGSLNEPCHWADGFPFN 289 (990)
Q Consensus 210 rql~~leagL~~~P~~pl~ks~~~~~~Lr~~~~~s~~~~~~~~~~~e~~r~l~~~~~~La~rs~~~~~e~~hwa~g~Pln 289 (990)
.|.-+|-|+++++|+.|--.....+..+++. ...+|...... + ||-+
T Consensus 172 ~E~alLkAIvLf~pd~~gL~~~~~Ve~lQe~----------------~~~aL~~y~~~-------------~----~p~~ 218 (267)
T d2p54a1 172 SDISLFVAAIICCGDRPGLLNVGHIEKMQEG----------------IVHVLRLHLQS-------------N----HPDD 218 (267)
T ss_dssp HHHHHHHHHHHSCTTCTTCSCHHHHHHHHHH----------------HHHHHHHHHHH-------------H----CTTC
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----------------HHHHHHHHHHh-------------c----CCCh
Confidence 3455688999999987643332234555553 23334433321 0 4556
Q ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHHH
Q 001964 290 LRLYEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLHN 335 (990)
Q Consensus 290 ~rlY~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h~ 335 (990)
+..|-+||..+=+++. +..+..|.|..+|.+|...-+++.+..
T Consensus 219 ~~rf~kLL~~Lp~LR~---l~~~~~e~l~~~k~~~~~~~l~pLl~E 261 (267)
T d2p54a1 219 IFLFPKLLQKMADLRQ---LVTEHAQLVQIIKKTESDAALHPLLQE 261 (267)
T ss_dssp TTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTTCCCCHHHHH
T ss_pred hhHHHHHHHHhHHHHH---HHHHHHHHHHHHhccCCCCCccHHHHH
Confidence 6678888888766654 778888999999999986656655443
No 9
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.98 E-value=3e+02 Score=26.50 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhCCCCCCCcCChHHHHHHHHhhhhcCCCCcccCchhhHHHHHhhhhhhcccCCCCCCCCcccccCCCCCH
Q 001964 211 TLKLLEAGLLLHPRVPLDKSNIAAQRLRQIISAALDRPIETGRNNESMQVLRSTVISLASRSDGSLNEPCHWADGFPFNL 290 (990)
Q Consensus 211 ql~~leagL~~~P~~pl~ks~~~~~~Lr~~~~~s~~~~~~~~~~~e~~r~l~~~~~~La~rs~~~~~e~~hwa~g~Pln~ 290 (990)
|.-+|-|+++++|+.|.-+....+..+++. .+.+|...... . ||-.+
T Consensus 173 E~alLkAiiL~~pd~~~L~~~~~Ve~lQ~~----------------~~~aL~~y~~~---------------~--~p~~~ 219 (265)
T d2b50b1 173 DLALFIAAIILCGDRPGLMNVPRVEAIQDT----------------ILRALEFHLQA---------------N--HPDAQ 219 (265)
T ss_dssp HHHHHHHHHHSCTTCTTCSCHHHHHHHHHH----------------HHHHHHHHHHH---------------H--CTTCT
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHH----------------HHHHHHHHHHH---------------h--CCChh
Confidence 344588999999987754433234555554 33344443321 0 34445
Q ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHhhhhccCCchhHH
Q 001964 291 RLYEMLLEACFDSSYETSIIEEVDELMEQIKKTWVILGMNQMLH 334 (990)
Q Consensus 291 rlY~~LL~~~FD~~de~~l~~E~dElLe~lk~tW~~LGI~q~~h 334 (990)
..|-+||..+-+++. ++.+..|.|..+|.+|...-+++.+-
T Consensus 220 ~rfakLL~~L~~LR~---ls~~~~e~L~~~k~~~~~~~l~pLl~ 260 (265)
T d2b50b1 220 QLFPKLLQKMADLRQ---LVTEHAQMMQRIKKTETETSLHPLLQ 260 (265)
T ss_dssp THHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTTSCCCHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 578899998888764 78889999999999998665665443
No 10
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}
Probab=11.76 E-value=2.8e+02 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHhhhhccCCchhHHHHHHHHHHHHHH
Q 001964 317 MEQIKKTWVILGMNQMLHNMCFTWVLFHRF 346 (990)
Q Consensus 317 Le~lk~tW~~LGI~q~~h~vcf~wVlf~qf 346 (990)
.++|+.+|..+.=+..-+-..|.--+|..|
T Consensus 7 ~~lI~~sW~~v~~~~~~~g~~~f~~lF~~~ 36 (151)
T d1a6ma_ 7 WQLVLHVWAKVEADVAGHGQDILIRLFKSH 36 (151)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHC
Confidence 468999999886665555555555667665
Done!