BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001965
(989 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/846 (38%), Positives = 503/846 (59%), Gaps = 40/846 (4%)
Query: 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRI 192
LM T VRN++++ H+ HGK+ D L+++ +S R+TDTR DEQER I
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAG---EARFTDTRKDEQERGI 68
Query: 193 SIKAVPMSL-----------VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLI 241
+IK+ +SL + + ++ S+L N++DSPGHV+FS E+TAALR+ DGA+++
Sbjct: 69 TIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 242 VDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301
VD EGV V TE +R A+ ER+ VVV+NKVDR + EL++ +D Y T+E +N
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVI 188
Query: 302 ISA-ASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLW 360
+S A G+VQV PA G V F S GW+FT+ FA Y K GV D K RLW
Sbjct: 189 VSTYADEVLGDVQVY-PARGTVAFGSGLHGWAFTIRQFATRYAKKFGV--DKAKMMDRLW 245
Query: 361 GDMYFHPDTRVFKKKPPASGG---ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGV 417
GD +F+P T+ + K + G ER+F F+L+P++++++ ++ K + L +L +
Sbjct: 246 GDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEI 305
Query: 418 TLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTI 477
L L + LL++ +A +M+V +PS A A + + +Y GP +
Sbjct: 306 VLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDAN 365
Query: 478 YKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEED 537
A+ +CDP LM+ V+K+ P SD F AFGRV++G +++GQ VR+ G Y P ++D
Sbjct: 366 CIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDD 425
Query: 538 MTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQ 597
+ +K + ++ + R PI P G+ + + G+D ++K+ TL E ++ + ++
Sbjct: 426 LFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV---MK 482
Query: 598 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 657
F+ PVV+ A E N ++LPK+VEGL+++SKS P +T + ESGEH + GTGEL+L+ +
Sbjct: 483 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICL 542
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
+DL ++ V +K++ PVV++ ETV SS +++PNK N+I + AEP++ ++ IE
Sbjct: 543 QDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIE 602
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
NG+++ K Y WD+ AR IW FGPD GPN+++D T + L+
Sbjct: 603 NGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ----YLHE 658
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFL 837
+KDS+V FQW +EGP+ E +R+V+ I+D + + +HRG GQIIPT RR Y+ FL
Sbjct: 659 IKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFL 718
Query: 838 MATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF 897
+A P++ EPV+ VEIQ P V IY+VL+++RG V ++ +PGTP + VKA+LPV ESF
Sbjct: 719 LADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESF 778
Query: 898 GFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRK 957
GF +LR T GQAF VFDHW+ + DPLD + A E ++ R+R
Sbjct: 779 GFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPT------------SKAGEIVLAARKRH 826
Query: 958 GMSEDV 963
GM E+V
Sbjct: 827 GMKEEV 832
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/846 (38%), Positives = 502/846 (59%), Gaps = 40/846 (4%)
Query: 133 LMSNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRI 192
LM T VRN++++ H+ HGK+ D L+++ +S R+TDTR DEQER I
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAG---EARFTDTRKDEQERGI 68
Query: 193 SIKAVPMSL-----------VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLI 241
+IK+ +SL + + ++ S+L N++DSPGHV+FS E+TAALR+ DGA+++
Sbjct: 69 TIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 242 VDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301
VD EGV V TE +R A+ ER+ VVV+NKVDR + EL++ +D Y T+E +N
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVI 188
Query: 302 ISA-ASTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLW 360
+S A G+VQV PA G V F S GW+FT+ FA Y K GV D K RLW
Sbjct: 189 VSTYADEVLGDVQVY-PARGTVAFGSGLHGWAFTIRQFATRYAKKFGV--DKAKMMDRLW 245
Query: 361 GDMYFHPDTRVFKKKPPASGG---ERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGV 417
GD +F+P T+ + K + G ER+F F+L+P++++++ ++ K + L +L +
Sbjct: 246 GDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEI 305
Query: 418 TLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTI 477
L L + LL++ +A +M+V +PS A A + + +Y GP +
Sbjct: 306 VLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDAN 365
Query: 478 YKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEED 537
A+ +CDP LM+ V+K+ P SD F AFGRV++G +++GQ VR+ G Y P ++D
Sbjct: 366 CIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDD 425
Query: 538 MTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQ 597
+ +K + ++ + R PI P G+ + + G+D ++K+ TL E ++ + ++
Sbjct: 426 LFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV---MK 482
Query: 598 FNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM 657
F+ PVV+ A E N ++LPK+VEGL+++SKS P +T + ESGEH + GTGEL+L+ +
Sbjct: 483 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICL 542
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
+DL ++ V +K++ PVV++ ETV SS +++PNK N+I + AEP++ ++ IE
Sbjct: 543 QDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIE 602
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
NG+++ K Y WD+ AR IW FGPD GPN+++D T + L+
Sbjct: 603 NGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ----YLHE 658
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFL 837
+KDS+V FQW +EGP+ E +R+V+ I+D + + + RG GQIIPT RR Y+ FL
Sbjct: 659 IKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQIIPTMRRATYAGFL 718
Query: 838 MATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF 897
+A P++ EPV+ VEIQ P V IY+VL+++RG V ++ +PGTP + VKA+LPV ESF
Sbjct: 719 LADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESF 778
Query: 898 GFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRK 957
GF +LR T GQAF VFDHW+ + DPLD + A E ++ R+R
Sbjct: 779 GFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPT------------SKAGEIVLAARKRH 826
Query: 958 GMSEDV 963
GM E+V
Sbjct: 827 GMKEEV 832
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 181/790 (22%), Positives = 310/790 (39%), Gaps = 141/790 (17%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQT---HHMSTFDPNSEKHTRYTDTRIDEQERRISIKAV 197
RN+ + H+ GKT + ++ T H + + D EQER I+I +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT----MDWMEQEQERGITITSA 66
Query: 198 PMSLVLEDSNSKSY---LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER 254
+ +K Y NI+D+PGHV+F+ E+ ++R+ DGAV++ A GV +E
Sbjct: 67 ATT-AFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 125
Query: 255 AIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQV 314
R A + ++P + VNK+DR+ +L + I A G V +
Sbjct: 126 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDL 185
Query: 315 IDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374
+ A N + A G +F +P D + A+ +H
Sbjct: 186 VKMKAIN--WNDADQGVTFEYED----------IPADMVELANE------WH-------- 219
Query: 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRL 434
Q ++E + +++ ++ E T AE+ L R+ ++ +
Sbjct: 220 ------------QNLIESAAEASEELMEKYLGGEELTEAEIKGALRQ---RVLNNEIILV 264
Query: 435 ACSSVFGS--ASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMV 492
C S F + D ++ ++PS D A ++ I K++ + D +P L
Sbjct: 265 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPA--INGILDDGKDTPAERHASDDEPFSALAF 322
Query: 493 NVTKLYPKSDCSVFD-AFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQA 551
+ +D V + F RVYSG++ +G +V + + ++ A
Sbjct: 323 KIA-----TDPFVGNLTFFRVYSGVVNSGDTVL---------NSVKAARERFGRIVQMHA 368
Query: 552 RDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDV-YIFRPLQFNTLPVVKTATEP 610
R I G G+ + TLC D D I ++F PV+ A EP
Sbjct: 369 NKREEIKEVRAGDIAAAIGLK-DVTTGDTLC----DPDAPIILERMEFPE-PVISIAVEP 422
Query: 611 LNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEV 669
++ KM L +++K P + EES + I G GEL+LD I+ ++ ++ VE
Sbjct: 423 KTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEA 481
Query: 670 KVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKT 729
V P V++ ET+ + K+T D+E R
Sbjct: 482 NVGKPQVAYRETI---------------RQKVT------------DVEGKHAKQSGGRGQ 514
Query: 730 LGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWG 789
G Y + + + F D +G ++ + +P VDK G Q
Sbjct: 515 YGHVVIDMYPLEPGSNPKGYEFINDIKG-GVIPGEYIPA-VDK------------GIQEQ 560
Query: 790 AREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPT-------ARRVAYS-AFLMATP 841
+ GPL P+ ++ + LH GS + + A +A+ F A P
Sbjct: 561 LKAGPLAGYPVVDMGIR----------LHFGSYHDVDSSELAFKLAASIAFKEGFKKAKP 610
Query: 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET 901
L+EP+ VE++TP + + LSRRRG + + + A +P+ E FG+ T
Sbjct: 611 VLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESE--VTGVKIHAEVPLSEMFGYAT 668
Query: 902 DLRYHTQGQA 911
LR T+G+A
Sbjct: 669 QLRSLTKGRA 678
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 181/790 (22%), Positives = 310/790 (39%), Gaps = 141/790 (17%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQT---HHMSTFDPNSEKHTRYTDTRIDEQERRISIKAV 197
RN+ + H+ GKT + ++ T H + + D EQER I+I +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT----MDWMEQEQERGITITSA 65
Query: 198 PMSLVLEDSNSKSY---LCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER 254
+ +K Y NI+D+PGHV+F+ E+ ++R+ DGAV++ A GV +E
Sbjct: 66 ATT-AFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 124
Query: 255 AIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQV 314
R A + ++P + VNK+DR+ +L + I A G V +
Sbjct: 125 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDL 184
Query: 315 IDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKK 374
+ A N + A G +F +P D + A+ +H
Sbjct: 185 VKMKAIN--WNDADQGVTFEYED----------IPADMVELANE------WH-------- 218
Query: 375 KPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRL 434
Q ++E + +++ ++ E T AE+ L R+ ++ +
Sbjct: 219 ------------QNLIESAAEASEELMEKYLGGEELTEAEIKGALRQ---RVLNNEIILV 263
Query: 435 ACSSVFGS--ASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMV 492
C S F + D ++ ++PS D A ++ I K++ + D +P L
Sbjct: 264 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPA--INGILDDGKDTPAERHASDDEPFSALAF 321
Query: 493 NVTKLYPKSDCSVFD-AFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQA 551
+ +D V + F RVYSG++ +G +V + + ++ A
Sbjct: 322 KIA-----TDPFVGNLTFFRVYSGVVNSGDTVL---------NSVKAARERFGRIVQMHA 367
Query: 552 RDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDV-YIFRPLQFNTLPVVKTATEP 610
R I G G+ + TLC D D I ++F PV+ A EP
Sbjct: 368 NKREEIKEVRAGDIAAAIGLK-DVTTGDTLC----DPDAPIILERMEFPE-PVISIAVEP 421
Query: 611 LNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEV 669
++ KM L +++K P + EES + I G GEL+LD I+ ++ ++ VE
Sbjct: 422 KTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN-VEA 480
Query: 670 KVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKT 729
V P V++ ET+ + K+T D+E R
Sbjct: 481 NVGKPQVAYRETI---------------RQKVT------------DVEGKHAKQSGGRGQ 513
Query: 730 LGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWG 789
G Y + + + F D +G ++ + +P VDK G Q
Sbjct: 514 YGHVVIDMYPLEPGSNPKGYEFINDIKG-GVIPGEYIPA-VDK------------GIQEQ 559
Query: 790 AREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPT-------ARRVAYS-AFLMATP 841
+ GPL P+ ++ + LH GS + + A +A+ F A P
Sbjct: 560 LKAGPLAGYPVVDMGIR----------LHFGSYHDVDSSELAFKLAASIAFKEGFKKAKP 609
Query: 842 RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET 901
L+EP+ VE++TP + + LSRRRG + + + A +P+ E FG+ T
Sbjct: 610 VLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESE--VTGVKIHAEVPLSEMFGYAT 667
Query: 902 DLRYHTQGQA 911
LR T+G+A
Sbjct: 668 QLRSLTKGRA 677
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 224/545 (41%), Gaps = 82/545 (15%)
Query: 384 SFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA 443
S ++ V E ++ + +G+ + SV +EL + AT + P+L C + F +
Sbjct: 213 SLIEAVAETSDELMEKYLGDEEISV----SELKEAIRQATTNVEFYPVL---CGTAFKNK 265
Query: 444 SG--FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKS 501
D ++ ++PS D + H + P+ I KA D S K+
Sbjct: 266 GVQLMLDAVIDYLPSPLDVKP-IIGHRASNPEEEVIAKA----DDSAEFAALAFKVMTDP 320
Query: 502 DCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAP 561
F RVYSG + +G V+ +G + V +L A R I +
Sbjct: 321 YVGKL-TFFRVYSGTMTSGSYVKNSTKGKR---------ERVGRLLQMHANSRQEIDTVY 370
Query: 562 PGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVE 621
G G+ + TLC + D I ++F PV+ + EP + ++ KM +
Sbjct: 371 SGDIAAAVGLKDT-GTGDTLCGEKND---IILESMEFPE-PVIHLSVEPKSKADQDKMTQ 425
Query: 622 GLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 680
L K+ + P EE+G+ I G GEL+LD ++ +++ ++ VE V P+VS+ E
Sbjct: 426 ALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRE 484
Query: 681 TVVESSSMKC-FAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYD 739
T S+ ++ F+ + + G V I+++ G F+ +
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQY-----------------GDVHIEFTPNETGAGFEFE-- 525
Query: 740 WDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEP 799
N ++ +P E S+ +KD++ G L P
Sbjct: 526 -------------------NAIVGGVVPREYIPSVEAGLKDAMENGV--------LAGYP 558
Query: 800 IRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCV 859
+ +VK K+ D + +I A A P ++EP+ V I+ P + +
Sbjct: 559 LIDVKAKLYDGSYHDVDSSEMAFKI--AASLALKEAAKKCDPVILEPMMKVTIEMPEEYM 616
Query: 860 SAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919
I ++ RRG V D +P A +V A++P+ E FG+ T LR +TQG+ FDH
Sbjct: 617 GDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDH 674
Query: 920 WAIVP 924
+A VP
Sbjct: 675 YAEVP 679
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMS 200
RN+ ++ H+ GKT + ++ T + E ++ D EQ+R I+I + +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
E + NI+D+PGHV+F+ E+ +LR+ DGAV ++DA GV TE R A
Sbjct: 70 AAWE-----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 261 QERLPIVVVVNKVDRL 276
+P +V VNK+D+L
Sbjct: 125 TYGVPRIVFVNKMDKL 140
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 224/545 (41%), Gaps = 82/545 (15%)
Query: 384 SFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA 443
S ++ V E ++ + +G+ + SV +EL + AT + P+L C + F +
Sbjct: 213 SLIEAVAETSDELMEKYLGDEEISV----SELKEAIRQATTNVEFYPVL---CGTAFKNK 265
Query: 444 SG--FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKS 501
D ++ ++PS D + H + P+ I KA D S K+
Sbjct: 266 GVQLMLDAVIDYLPSPLDVKP-IIGHRASNPEEEVIAKA----DDSAEFAALAFKVMTDP 320
Query: 502 DCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAP 561
F RVYSG + +G V+ +G + V +L A R I +
Sbjct: 321 YVGKL-TFFRVYSGTMTSGSYVKNSTKGKR---------ERVGRLLQMHANSRQEIDTVY 370
Query: 562 PGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVE 621
G G+ + TLC + D I ++F PV+ + EP + ++ KM +
Sbjct: 371 SGDIAAAVGLKDT-GTGDTLCGEKND---IILESMEFPE-PVIHLSVEPKSKADQDKMTQ 425
Query: 622 GLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 680
L K+ + P EE+G+ I G GEL+LD ++ +++ ++ VE V P+VS+ E
Sbjct: 426 ALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRE 484
Query: 681 TVVESSSMKC-FAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYD 739
T S+ ++ F+ + + G V I+++ G F+ +
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQY-----------------GDVHIEFTPNETGAGFEFE-- 525
Query: 740 WDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEP 799
N ++ +P E S+ +KD++ G L P
Sbjct: 526 -------------------NAIVGGVVPREYIPSVEAGLKDAMENGV--------LAGYP 558
Query: 800 IRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCV 859
+ +VK K+ D + +I A A P ++EP+ V I+ P + +
Sbjct: 559 LIDVKAKLYDGSYHDVDSSEMAFKI--AASLALKEAAKKCDPVILEPMMKVTIEMPEEYM 616
Query: 860 SAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919
I ++ RRG V D +P A +V A++P+ E FG+ T LR +TQG+ FDH
Sbjct: 617 GDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDH 674
Query: 920 WAIVP 924
+A VP
Sbjct: 675 YAEVP 679
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMS 200
RN+ ++ H+ GKT + ++ T + E ++ D EQ+R I+I + +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
E + NI+D+PGHV+ + E+ +LR+ DGAV ++DA GV TE R A
Sbjct: 70 AAWE-----GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 261 QERLPIVVVVNKVDRL 276
+P +V VNK+D+L
Sbjct: 125 TYGVPRIVFVNKMDKL 140
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 224/545 (41%), Gaps = 82/545 (15%)
Query: 384 SFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA 443
S ++ V E ++ + +G+ + SV +EL + AT + P+L C + F +
Sbjct: 213 SLIEAVAETSDELMEKYLGDEEISV----SELKEAIRQATTNVEFYPVL---CGTAFKNK 265
Query: 444 SG--FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKS 501
D ++ ++PS D + H + P+ I KA D S K+
Sbjct: 266 GVQLMLDAVIDYLPSPLDVKP-IIGHRASNPEEEVIAKA----DDSAEFAALAFKVMTDP 320
Query: 502 DCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAP 561
F RVYSG + +G V+ +G + V +L A R I +
Sbjct: 321 YVGKL-TFFRVYSGTMTSGSYVKNSTKGKR---------ERVGRLLQMHANSRQEIDTVY 370
Query: 562 PGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVE 621
G G+ + TLC + D I ++F PV+ + EP + ++ KM +
Sbjct: 371 SGDIAAAVGLKDT-GTGDTLCGEKND---IILESMEFPE-PVIHLSVEPKSKADQDKMTQ 425
Query: 622 GLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 680
L K+ + P EE+G+ I G GEL+LD ++ +++ ++ VE V P+VS+ E
Sbjct: 426 ALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRE 484
Query: 681 TVVESSSMKC-FAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYD 739
T S+ ++ F+ + + G V I+++ G F+ +
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQY-----------------GDVHIEFTPNETGAGFEFE-- 525
Query: 740 WDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEP 799
N ++ +P E S+ +KD++ G L P
Sbjct: 526 -------------------NAIVGGVVPREYIPSVEAGLKDAMENGV--------LAGYP 558
Query: 800 IRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCV 859
+ +VK K+ D + +I A A P ++EP+ V I+ P + +
Sbjct: 559 LIDVKAKLYDGSYHDVDSSEMAFKI--AASLALKEAAKKCDPVILEPMMKVTIEMPEEYM 616
Query: 860 SAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919
I ++ RRG V D +P A +V A++P+ E FG+ T LR +TQG+ FDH
Sbjct: 617 GDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDH 674
Query: 920 WAIVP 924
+A VP
Sbjct: 675 YAEVP 679
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMS 200
RN+ ++ H+ GKT + ++ T + E ++ D EQ+R I+I + +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
E + NI+D+PGHV+F+ E+ +LR+ DGAV ++DA GV TE R A
Sbjct: 70 AAWE-----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 261 QERLPIVVVVNKVDRL 276
+P +V VNK+D+L
Sbjct: 125 TYGVPRIVFVNKMDKL 140
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/545 (23%), Positives = 224/545 (41%), Gaps = 82/545 (15%)
Query: 384 SFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACSSVFGSA 443
S ++ V E ++ + +G+ + SV +EL + AT + P+L C + F +
Sbjct: 213 SLIEAVAETSDELMEKYLGDEEISV----SELKEAIRQATTNVEFYPVL---CGTAFKNK 265
Query: 444 SG--FTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKS 501
D ++ ++PS D + H + P+ I KA D S K+
Sbjct: 266 GVQLMLDAVIDYLPSPLDVKP-IIGHRASNPEEEVIAKA----DDSAEFAALAFKVMTDP 320
Query: 502 DCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAP 561
F RVYSG + +G V+ +G + V +L A R I +
Sbjct: 321 YVGKL-TFFRVYSGTMTSGSYVKNSTKGKR---------ERVGRLLQMHANSRQEIDTVY 370
Query: 562 PGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVE 621
G G+ + TLC + D I ++F PV+ + EP + ++ KM +
Sbjct: 371 SGDIAAAVGLKDT-GTGDTLCGEKND---IILESMEFPE-PVIHLSVEPKSKADQDKMTQ 425
Query: 622 GLRKISKSYPLAITKV-EESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCE 680
L K+ + P EE+G+ I G GEL+LD ++ +++ ++ VE V P+VS+ E
Sbjct: 426 ALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN-VECNVGAPMVSYRE 484
Query: 681 TVVESSSMKC-FAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYD 739
T S+ ++ F+ + + G V I+++ G F+ +
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQY-----------------GDVHIEFTPNETGAGFEFE-- 525
Query: 740 WDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEP 799
N ++ +P E S+ +KD++ G L P
Sbjct: 526 -------------------NAIVGGVVPREYIPSVEAGLKDAMENGV--------LAGYP 558
Query: 800 IRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCV 859
+ +VK K+ D + +I A A P ++EP+ V I+ P + +
Sbjct: 559 LIDVKAKLYDGSYHDVDSSEMAFKI--AASLALKEAAKKCDPVILEPMMKVTIEMPEEYM 616
Query: 860 SAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDH 919
I ++ RRG V D +P A +V A++P+ E FG+ T LR +TQG+ FDH
Sbjct: 617 GDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDH 674
Query: 920 WAIVP 924
+A VP
Sbjct: 675 YAEVP 679
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMS 200
RN+ ++ H+ GKT + ++ T + E ++ D EQ+R I+I + +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
E + NI+D+PGHV+ + E+ +LR+ DGAV ++DA GV TE R A
Sbjct: 70 AAWE-----GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 261 QERLPIVVVVNKVDRL 276
+P +V VNK+D+L
Sbjct: 125 TYGVPRIVFVNKMDKL 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 204/515 (39%), Gaps = 73/515 (14%)
Query: 419 LSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIY 478
+ T L + P+ L + D +V ++PS D K T P+ +
Sbjct: 246 IRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEGEVVE 300
Query: 479 KAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538
+ DP+GPL K+ F RVYSG + +G V +G
Sbjct: 301 ---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK------- 349
Query: 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQF 598
+ V +L A R + G + G+ +I + D I ++
Sbjct: 350 --ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILESIEV 404
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIM 657
PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L+ I+
Sbjct: 405 PE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIV 463
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
L+ + +V+ V P V++ ET I +P+ D+E
Sbjct: 464 DRLKREF-KVDANVGKPQVAYRET----------------------ITKPV------DVE 494
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
+ R G + K + L S + F N ++ +P K + A
Sbjct: 495 GKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KEYIPA 541
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFL 837
V+ I + Q GPL P+ ++K + D A + +I A
Sbjct: 542 VQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKI--AGSMAIKEAVQ 595
Query: 838 MATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF 897
P ++EP+ VE+ TP + + + L+ RRG + +P A +++AF+P+ E F
Sbjct: 596 KGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPLAEMF 653
Query: 898 GFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
G+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 654 GYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 204/515 (39%), Gaps = 73/515 (14%)
Query: 419 LSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIY 478
+ T L + P+ L + D +V ++PS D K T P+ +
Sbjct: 246 IRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEGEVVE 300
Query: 479 KAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538
+ DP+GPL K+ F RVYSG + +G V +G
Sbjct: 301 ---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK------- 349
Query: 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQF 598
+ V +L A R + G + G+ +I + D I ++
Sbjct: 350 --ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILESIEV 404
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIM 657
PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L+ I+
Sbjct: 405 PE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIV 463
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
L+ + +V+ V P V++ ET I +P+ D+E
Sbjct: 464 DRLKREF-KVDANVGKPQVAYRET----------------------ITKPV------DVE 494
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
+ R G + K + L S + F N ++ +P K + A
Sbjct: 495 GKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KEYIPA 541
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFL 837
V+ I + Q GPL P+ ++K + D A + +I A
Sbjct: 542 VQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKI--AGSMAIKEAVQ 595
Query: 838 MATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESF 897
P ++EP+ VE+ TP + + + L+ RRG + +P A +++AF+P+ E F
Sbjct: 596 KGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPLAEMF 653
Query: 898 GFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
G+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 654 GYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 196/486 (40%), Gaps = 72/486 (14%)
Query: 448 DMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFD 507
D +V ++PS D K T P+ + + DP+GPL K+
Sbjct: 241 DAVVDYLPSPLDIPPIK----GTTPEGEVVE---IHPDPNGPLAALAFKIMADPYVGRL- 292
Query: 508 AFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL 567
F RVYSG + +G V +G + V +L A R + G
Sbjct: 293 TFIRVYSGTLTSGSYVYNTTKGRK---------ERVARLLRMHANHREEVEELKAGDLGA 343
Query: 568 IEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKIS 627
+ G+ +I + D I ++ PV+ A EP ++ K+ + L +++
Sbjct: 344 VVGLKETITGDTLVGE---DAPRVILESIEVPE-PVIDVAIEPKTKADQEKLSQALARLA 399
Query: 628 KSYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686
+ P ++ E+G+ I G GEL+L+ I+ L+ + +V+ V P V++ ET
Sbjct: 400 EEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRET----- 453
Query: 687 SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAAR 746
I +P+ D+E + R G + K + L
Sbjct: 454 -----------------ITKPV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRG 487
Query: 747 SIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFK 806
S + F N ++ +P K + AV+ I + Q GPL P+ ++K
Sbjct: 488 SGFEF------VNAIVGGVIP----KEYIPAVQKGIEEAMQ----SGPLIGFPVVDIKVT 533
Query: 807 IVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVL 866
+ D A + +I A P ++EP+ VE+ TP + + + L
Sbjct: 534 LYDGSYAEVDSSEMAFKI--AGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDL 591
Query: 867 SRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGD 926
+ RRG + +P A +++AF+P+ E FG+ TDLR TQG+ + FDH+ VP
Sbjct: 592 NARRGQILG--MEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQ 649
Query: 927 PLDKSI 932
+K I
Sbjct: 650 VQEKLI 655
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 209 KSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVV 268
K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A + ++P +
Sbjct: 42 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 101
Query: 269 VVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 102 FANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 148
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 175/791 (22%), Positives = 303/791 (38%), Gaps = 151/791 (19%)
Query: 138 TLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAV 197
++R VALVGH GKT + L+ +T E+ T TD + + R +++
Sbjct: 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RVEEGTTTTDYTPEAKLHRTTVRTG 65
Query: 198 PMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIR 257
L+ + + ++D+PG+ +F E+ AL AD A++ V A GV V TERA
Sbjct: 66 VAPLLF-----RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 258 HAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVIDP 317
A + LP +VVV K+D+ Y+ L + +T G + ID
Sbjct: 121 VAERLGLPRMVVVTKLDK---------GGDYYALLEDL----------RSTLGPILPID- 160
Query: 318 AAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFHPDTRVFKKKPP 377
W + F HG + E R + P+ R ++
Sbjct: 161 -----LPLYEGGKWVGLIDVF-------HGKAYRYENGEER---EAEVPPEERERVQR-- 203
Query: 378 ASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATYRLNVRPLLRLACS 437
F Q VLE + + ++ ++ + E T L A R + P+ +
Sbjct: 204 -------FRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGE 256
Query: 438 SVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKL 497
G +++++ +PS + GP + ++K VD P M V
Sbjct: 257 REIGVLP-LLELILEALPSP-------TERFGDGPPLAKVFKVQVD-----PFMGQV--- 300
Query: 498 YPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPI 557
A+ R+Y G ++ G S++ E V+ + L++ +D + +
Sbjct: 301 ----------AYLRLYRGRLKPGDSLQ----------SEAGQVR-LPHLYVPMGKDLLEV 339
Query: 558 SSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELP 617
A G +VL + + L E E + P P V A P ++
Sbjct: 340 EEAEAG-FVLGVPKAEGLHRGMVLWQGEKPESEEV--PFARLPDPNVPVALHPKGRTDEA 396
Query: 618 KMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVV 676
++ E LRK+ + P L + + EE+GE + G GEL+L + + L++ EVE V P V
Sbjct: 397 RLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFSV--PKV 454
Query: 677 SFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKT 736
+ ET+ K AE K K T +G W R L +
Sbjct: 455 PYRETI------KKVAEGQGKYKKQTG-------------GHGQYGDVWLR--LEPASEY 493
Query: 737 KYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLC 796
++W + +P++ +++ +K++ A++G L
Sbjct: 494 GFEWRITGG-------------------VIPSKYQEAIEEGIKEA--------AKKGVLA 526
Query: 797 DEPIRNVKFKIVDARIAPEPLHR--GSGQIIPTARRVAYSAFLM-ATPRLMEPVYYVEIQ 853
P+ K + + H S A +A+ + A P L+EP+Y +++
Sbjct: 527 GFPVMGFKAIVYNGSY-----HEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVL 581
Query: 854 TPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFS 913
P + V + + L RRG + + Q G + +V A +P+ E + L T G
Sbjct: 582 APQERVGDVLSDLQARRGRILG-MEQEGALS-VVHAEVPLAEVLEYYKALPGLTGGAGAY 639
Query: 914 LSVFDHWAIVP 924
F H+A VP
Sbjct: 640 TLEFSHYAEVP 650
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 120/523 (22%), Positives = 207/523 (39%), Gaps = 81/523 (15%)
Query: 415 LGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKN 474
L + T L + P+ L + D +V ++PS D K T P+
Sbjct: 242 LVAAIRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEG 296
Query: 475 STIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534
+ + DP+GPL K+ F RVYSG + +G V +G
Sbjct: 297 EVVE---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK--- 349
Query: 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFR 594
+ V +L A R + G + G+ +I + D I
Sbjct: 350 ------ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILE 400
Query: 595 PLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYL 653
++ PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L
Sbjct: 401 SIEVPE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHL 459
Query: 654 DSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLA 713
+ I+ L+ + +V+ V P V++ ET I +P+
Sbjct: 460 EIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITKPV----- 491
Query: 714 EDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKS 773
D+E + R G + K + L S + F N ++ +P K
Sbjct: 492 -DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KE 537
Query: 774 LLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARI----APEPLHRGSGQIIPTAR 829
+ AV+ I + Q GPL P+ ++K + D + E + +G +
Sbjct: 538 YIPAVQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSM----- 588
Query: 830 RVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKA 889
A P ++EP+ VE+ TP + + + L+ RRG + +P A +++A
Sbjct: 589 -AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRA 645
Query: 890 FLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
F+P+ E FG+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 646 FVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + +E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---AEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 120/523 (22%), Positives = 207/523 (39%), Gaps = 81/523 (15%)
Query: 415 LGVTLSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKN 474
L + T L + P+ L + D +V ++PS D K T P+
Sbjct: 242 LVAAIRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEG 296
Query: 475 STIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPED 534
+ + DP+GPL K+ F RVYSG + +G V +G
Sbjct: 297 EVVE---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK--- 349
Query: 535 EEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFR 594
+ V +L A R + G + G+ +I + D I
Sbjct: 350 ------ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILE 400
Query: 595 PLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYL 653
++ PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L
Sbjct: 401 SIEVPE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHL 459
Query: 654 DSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLA 713
+ I+ L+ + +V+ V P V++ ET I +P+
Sbjct: 460 EIIVDRLKREF-KVDANVGKPQVAYRET----------------------ITKPV----- 491
Query: 714 EDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKS 773
D+E + R G + K + L S + F N ++ +P K
Sbjct: 492 -DVEGKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KE 537
Query: 774 LLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARI----APEPLHRGSGQIIPTAR 829
+ AV+ I + Q GPL P+ ++K + D + E + +G +
Sbjct: 538 YIPAVQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSM----- 588
Query: 830 RVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKA 889
A P ++EP+ VE+ TP + + + L+ RRG + +P A +++A
Sbjct: 589 -AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRA 645
Query: 890 FLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
F+P+ E FG+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 646 FVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 119/519 (22%), Positives = 206/519 (39%), Gaps = 81/519 (15%)
Query: 419 LSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIY 478
+ T L + P+ L + D +V ++PS D K T P+ +
Sbjct: 246 IRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEGEVVE 300
Query: 479 KAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538
+ DP+GPL K+ F RVYSG + +G V +G
Sbjct: 301 ---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK------- 349
Query: 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQF 598
+ V +L A R + G + G+ +I + D I ++
Sbjct: 350 --ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILESIEV 404
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIM 657
PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L+ I+
Sbjct: 405 PE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIV 463
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
L+ + +V+ V P V++ ET I +P+ D+E
Sbjct: 464 DRLKREF-KVDANVGKPQVAYRET----------------------ITKPV------DVE 494
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
+ R G + K + L S + F N ++ +P K + A
Sbjct: 495 GKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KEYIPA 541
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARI----APEPLHRGSGQIIPTARRVAY 833
V+ I + Q GPL P+ ++K + D + E + +G +
Sbjct: 542 VQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSM------AIK 591
Query: 834 SAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPV 893
A P ++EP+ VE+ TP + + + L+ RRG + +P A +++AF+P+
Sbjct: 592 EAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPL 649
Query: 894 IESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
E FG+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 650 AEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 119/519 (22%), Positives = 206/519 (39%), Gaps = 81/519 (15%)
Query: 419 LSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIY 478
+ T L + P+ L + D +V ++PS D K T P+ +
Sbjct: 246 IRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEGEVVE 300
Query: 479 KAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538
+ DP+GPL K+ F RVYSG + +G V +G
Sbjct: 301 ---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK------- 349
Query: 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQF 598
+ V +L A R + G + G+ +I + D I ++
Sbjct: 350 --ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILESIEV 404
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIM 657
PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L+ I+
Sbjct: 405 PE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIV 463
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
L+ + +V+ V P V++ ET I +P+ D+E
Sbjct: 464 DRLKREF-KVDANVGKPQVAYRET----------------------ITKPV------DVE 494
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
+ R G + K + L S + F N ++ +P K + A
Sbjct: 495 GKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KEYIPA 541
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARI----APEPLHRGSGQIIPTARRVAY 833
V+ I + Q GPL P+ ++K + D + E + +G +
Sbjct: 542 VQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSM------AIK 591
Query: 834 SAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPV 893
A P ++EP+ VE+ TP + + + L+ RRG + +P A +++AF+P+
Sbjct: 592 EAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPL 649
Query: 894 IESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
E FG+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 650 AEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 119/519 (22%), Positives = 206/519 (39%), Gaps = 81/519 (15%)
Query: 419 LSNATYRLNVRPLLRLACSSVFGSASGFTDMLVKFIPSAKDAAARKVDHIYTGPKNSTIY 478
+ T L + P+ L + D +V ++PS D K T P+ +
Sbjct: 246 IRKGTIDLKITPVF-LGSALKNKGVQLLLDAVVDYLPSPLDIPPIK----GTTPEGEVVE 300
Query: 479 KAMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDM 538
+ DP+GPL K+ F RVYSG + +G V +G
Sbjct: 301 ---IHPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVYNTTKGRK------- 349
Query: 539 TVKEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYIFRPLQF 598
+ V +L A R + G + G+ +I + D I ++
Sbjct: 350 --ERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE---DAPRVILESIEV 404
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYP-LAITKVEESGEHTILGTGELYLDSIM 657
PV+ A EP ++ K+ + L ++++ P ++ E+G+ I G GEL+L+ I+
Sbjct: 405 PE-PVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIV 463
Query: 658 KDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIE 717
L+ + +V+ V P V++ ET I +P+ D+E
Sbjct: 464 DRLKREF-KVDANVGKPQVAYRET----------------------ITKPV------DVE 494
Query: 718 NGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNA 777
+ R G + K + L S + F N ++ +P K + A
Sbjct: 495 GKFIRQTGGR---GQYGHVKIKVEPLPRGSGFEF------VNAIVGGVIP----KEYIPA 541
Query: 778 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARI----APEPLHRGSGQIIPTARRVAY 833
V+ I + Q GPL P+ ++K + D + E + +G +
Sbjct: 542 VQKGIEEAMQ----SGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSM------AIK 591
Query: 834 SAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPV 893
A P ++EP+ VE+ TP + + + L+ RRG + +P A +++AF+P+
Sbjct: 592 EAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPL 649
Query: 894 IESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 932
E FG+ TDLR TQG+ + FDH+ VP +K I
Sbjct: 650 AEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI 688
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 197/490 (40%), Gaps = 80/490 (16%)
Query: 448 DMLVKFIPSAKDAAARKVDHIYTGPKNSTIYKAMVDCDPSGPLMVNVTKLYPKSDCSVFD 507
D +V ++PS D K T P+ + + DP+GPL K+
Sbjct: 274 DAVVDYLPSPLDIPPIK----GTTPEGEVVE---IHPDPNGPLAALAFKIMADPYVGRL- 325
Query: 508 AFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL 567
F RVYSG + +G V +G + V +L A R + G
Sbjct: 326 TFIRVYSGTLTSGSYVYNTTKGRK---------ERVARLLRMHANHREEVEELKAGDLGA 376
Query: 568 IEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKIS 627
+ G+ +I + D I ++ PV+ A EP ++ K+ + L +++
Sbjct: 377 VVGLKETITGDTLVGE---DAPRVILESIEVPE-PVIDVAIEPKTKADQEKLSQALARLA 432
Query: 628 KSYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686
+ P +++ E+G I G GEL L+ I+ L+ + +V+ V P V++ ET
Sbjct: 433 EESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREF-KVDANVGKPQVAYRET----- 486
Query: 687 SMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAAR 746
I +P+ D+E + R G + K + L
Sbjct: 487 -----------------ITKPV------DVEGKFIRQTGGR---GQYGHVKIKVEPLPRG 520
Query: 747 SIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFK 806
S + F N ++ +P K + AV+ I + Q GPL P+ ++K
Sbjct: 521 SGFEF------VNAIVGGVIP----KEYIPAVQKGIEEAMQ----SGPLIGFPVVDIKVT 566
Query: 807 IVDARI----APEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAI 862
+ D + E + +G + A P ++EP+ VE+ TP + + +
Sbjct: 567 LYDGSYHEVDSSEMAFKIAGSM------AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDV 620
Query: 863 YTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAI 922
L+ RRG + +P A +++AF+P+ E FG+ TDLR TQG+ + FDH+
Sbjct: 621 IGDLNARRGQILG--MEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQE 678
Query: 923 VPGDPLDKSI 932
VP +K I
Sbjct: 679 VPKQVQEKLI 688
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN+ + H+ GKT + ++ T + E H EQER + + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFMEQERE---RGITI 65
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K + NI+D+PGHV+F+ E+ ++R+ DGA+++ D+++GV +E R A
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 260 IQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
+ ++P + NK+D+ +L L + +L V+ I T +G + V+
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
VRN ++ H+ HGK+ D L+E T +S EK + DT E+ER I++K +
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAIS----EREKREQLLDTLDVERERGITVKMQAV 61
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + + +Y +++D+PGHV+FS E++ AL +GA+L++DA++G+ T A
Sbjct: 62 RMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 260 IQERLPIVVVVNKVD 274
+++ L I+ V+NK+D
Sbjct: 122 VEQDLVIIPVINKID 136
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
VRN ++ H+ HGK+ D L+E T +S EK + DT E+ER I++K +
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAIS----EREKREQLLDTLDVERERGITVKXQAV 61
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + +Y +++D+PGHV+FS E++ AL +GA+L++DA++G+ T A
Sbjct: 62 RXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 260 IQERLPIVVVVNKVD 274
+++ L I+ V+NK+D
Sbjct: 122 VEQDLVIIPVINKID 136
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN +++ H+ HGK+ D +I+ +S + E + D+ E+ER I+IKA +
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLS----DREMEAQVLDSMDLERERGITIKAQSV 59
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+L + S+ ++Y N +D+PGHV+FS E++ +L +GA+L+VDA +GV T A
Sbjct: 60 TLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119
Query: 260 IQERLPIVVVVNKVD 274
++ L +V V+NK+D
Sbjct: 120 MEMDLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 140 VRNVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
+RN +++ H+ HGK+ D +I+ +S + E + D+ E+ER I+IKA +
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLS----DREMEAQVLDSMDLERERGITIKAQSV 59
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+L + S+ ++Y N +D+PGHV+FS E++ +L +GA+L+VDA +GV T A
Sbjct: 60 TLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119
Query: 260 IQERLPIVVVVNKVD 274
++ L +V V+NK+D
Sbjct: 120 MEMDLEVVPVLNKID 134
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 99/431 (22%), Positives = 172/431 (39%), Gaps = 82/431 (19%)
Query: 509 FGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVLI 568
F RVYSG++ +G SV +G + V ++ A R I G +
Sbjct: 338 FARVYSGVLSSGDSVLNSVKGKK---------ERVGRMVQMHANQREEIKEVRAGDIAAL 388
Query: 569 EGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISK 628
G+ + TLC++E I + F PV+ A EP ++ KM L K+++
Sbjct: 389 IGM-KDVTTGDTLCSIEKP---IILERMDFPE-PVISVAVEPKTKADQEKMGIALGKLAQ 443
Query: 629 SYP-LAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSS 687
P + EESG+ I G GEL+LD I+ ++ + VE + P V++ ET+ + +
Sbjct: 444 EDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRETITKDNV 502
Query: 688 MKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARS 747
+IE V R G + W +A
Sbjct: 503 ---------------------------EIEGKFVRQSGGRGQFG------HCWIRFSAAD 529
Query: 748 IWAFGPDKQG---PNILLDDTLPTE----VDKSLLNAVKDSIVQGFQWGAREGPLCDEPI 800
+ G +G N ++ +P E + K + +K+ +V G+ + + D
Sbjct: 530 VDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSY 589
Query: 801 RNV-----KFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTP 855
+V FKI + + +G G++ +EP+ VE+ TP
Sbjct: 590 HDVDSNEMAFKIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTP 630
Query: 856 IDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLS 915
D + + L+RRRG + + +++A +P+ E FG+ TD+R +QG+A
Sbjct: 631 EDYMGDVMGDLNRRRGLIQG--MEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688
Query: 916 VFDHWAIVPGD 926
F +A P +
Sbjct: 689 EFSKYAEAPSN 699
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 9/180 (5%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQT---HHMSTFDPNSEKHTRYTDTRIDEQERRISIKAV 197
RN+ + H+ GKT + ++ T H + + TD + EQER I+I +
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAAT----TDWMVQEQERGITITSA 69
Query: 198 PMSLVLEDSNSK--SYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA 255
++ + S + +Y N++D+PGHV+F+ E+ +LR+ DGAV++ GV +E
Sbjct: 70 AVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129
Query: 256 IRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAASTTAGNVQVI 315
R A + +P +V VNK+DR + +L HT + I A G V +I
Sbjct: 130 WRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLI 189
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
N+ ++ H+ GKT + L+ + ++ + +K T TD + E++R I+I+ S
Sbjct: 4 NIGVLAHVDAGKTTLTESLLYNSGAITELG-SVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
E++ NI+D+PGH++F E+ +L + DGA+L++ A +GV T R + HA++
Sbjct: 63 QWENTK-----VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALR 116
Query: 262 ER-LPIVVVVNKVDRLITELKLPPKDAYHKLRHTI 295
+ +P + +NK+D+ +L +D KL I
Sbjct: 117 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 508 AFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTVKEVTKLWIYQARDRIPISSAPPGSWVL 567
A+ R+YSG++ SVRV E +K VT+++ + I A G V+
Sbjct: 265 AYIRLYSGVLHLRDSVRV---------SEKEKIK-VTEMYTSINGELCKIDRAYSGEIVI 314
Query: 568 IEGVDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKIS 627
++ +K ++ D + R N P+++T EP P + +++ L +IS
Sbjct: 315 LQN---EFLKLNSVLG---DTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEIS 368
Query: 628 KSYPLAITKVEESGEHTILG-TGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESS 686
S PL V+ + IL G++ ++ I L+E Y VE+++ +P V + E ++++
Sbjct: 369 DSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKEPTVIYMERPLKNA 427
Query: 687 SMKCFAETP 695
E P
Sbjct: 428 EYTIHIEVP 436
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVTAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVTAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I +
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITIN----T 65
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 66 AHVEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I +
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITIN----T 65
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 66 AHVEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 14 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 68
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 69 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 125
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 126 QVGVPYIVVFMNKVD 140
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 34/213 (15%)
Query: 142 NVALVGHLHHGKTVFMDMLI------------EQTHHMSTFDPNSEKHTRYTDTRIDEQE 189
N+ ++GH+ HGK+ + L+ E SEK D +E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 190 RRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-- 247
R ++I M +K Y I+D+PGH +F M AD A+L+V A +G
Sbjct: 68 RGVTINLTFMRF-----ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEY 122
Query: 248 -VMVNTERAIR-HAIQERL----PIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNH 301
++ E R H I + ++V VNK+D +TE PP D + + ++ ++
Sbjct: 123 EAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD--LTE---PPYDE-KRYKEIVDQVSKF 176
Query: 302 ISAASTTAGNVQ---VIDPAAGNVCFASASAGW 331
+ + V+ V+ P+ N+ S + W
Sbjct: 177 MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKW 209
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T + +PN E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D PGH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q +P IVV +NKVD
Sbjct: 125 QVGVPYIVVFMNKVD 139
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/487 (21%), Positives = 179/487 (36%), Gaps = 99/487 (20%)
Query: 187 EQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
E+ER IS+ M D + N++D+PGH +FS++ L D A++++DAA+
Sbjct: 81 ERERGISVTTSVMQFPYRDR-----VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK 135
Query: 247 GVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIEVINNHISAAS 306
GV T + + P++ VNK+DR +A H L + I H+
Sbjct: 136 GVEAQTRKLMDVCRMRATPVMTFVNKMDR----------EALHPL-DVMADIEQHLQIEC 184
Query: 307 TTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDAEKFASRLWGDMYFH 366
P + S+ G LH L+ HG R+ + H
Sbjct: 185 A---------PMTWPIGMGSSFKGTYDLLHKQLHLFSATHG---------GRIQSGIVIH 226
Query: 367 PDTRVFKKKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNATY-R 425
G + +P Y E + A L E G Y +
Sbjct: 227 -------------GAD--------DPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLK 265
Query: 426 LNVRPLLRLACSSVFGSASGFTDMLVKFIPS--AKDAAARKV---DHIYTGPKNSTIYKA 480
+ P+ + + FG DM V+F P + AA R V + +TG ++K
Sbjct: 266 GELTPVFFGSAINNFGVRE-MLDMFVEFAPGPQPRPAATRVVEPGEEAFTG----VVFKI 320
Query: 481 MVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGIIQTGQSVRVLGEGYSPEDEEDMTV 540
+ D + + AF R+ SG G ++ G +D+TV
Sbjct: 321 QANMDKAHRDRM---------------AFLRICSGTFTRGMRLKHHRTG------KDVTV 359
Query: 541 KEVTKLWIYQARDRIPISSAPPGSWVLIEGVDASIMKSATLCNLEYDEDVYI--FRPLQF 598
T I+ A+DR + A PG + I + + E + V I F P F
Sbjct: 360 ANAT---IFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHF 416
Query: 599 NTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMK 658
+ + NP + ++ +GL ++++ + + + + ++ + G L D I+
Sbjct: 417 RRVRLK-------NPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVA 469
Query: 659 DLRELYS 665
L + Y
Sbjct: 470 RLADEYG 476
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDP----NSEKHTRYTDTRIDEQERRISIKA 196
R A++ H GKT + ++ + T S +H + +D E++R ISI
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITT 72
Query: 197 VPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI 256
M D L N++D+PGH +FS++ L D ++++DAA+GV T + +
Sbjct: 73 SVMQFPYHDC-----LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM 127
Query: 257 RHAIQERLPIVVVVNKVDRLITE 279
PI+ +NK+DR I +
Sbjct: 128 EVTRLRDTPILTFMNKLDRDIRD 150
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDP----NSEKHTRYTDTRIDEQERRISIKA 196
R A++ H GKT + ++ + T S +H + +D E++R ISI
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAK-SDWMEMEKQRGISITT 72
Query: 197 VPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAI 256
M D L N++D+PGH +FS++ L D ++++DAA+GV T + +
Sbjct: 73 SVMQFPYHDC-----LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM 127
Query: 257 RHAIQERLPIVVVVNKVDRLITE 279
PI+ +NK+DR I +
Sbjct: 128 EVTRLRDTPILTFMNKLDRDIRD 150
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 141 RNVALVGHLHHGKTVFMDMLIEQTHHMSTFDP-NSEKHTRYTDTRIDEQERRISIKAVPM 199
R A++ H GKT + L+ + S K R+ + E E++ + + +
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQ---RGISV 70
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHA 259
+ + K YL N++D+PGH +F+++ L D A+ ++DAA+GV T +
Sbjct: 71 TTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVC 130
Query: 260 IQERLPIVVVVNKVDR 275
PI +NK DR
Sbjct: 131 RLRHTPIXTFINKXDR 146
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 24/133 (18%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202
V ++GH+ HGKT +D + +H++ T EQE + + V
Sbjct: 11 VTIMGHVDHGKTTLLDAI---------------RHSKVT-----EQEAGGITQHIGAYQV 50
Query: 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE 262
+ ++L D+PGH F+ ++ D +L+V A +GVM T AI HA
Sbjct: 51 TVNDKKITFL----DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAA 106
Query: 263 RLPIVVVVNKVDR 275
+PI+V +NK+D+
Sbjct: 107 NVPIIVAINKMDK 119
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHM------------STFDPNSEKHTRYTDTRIDEQE 189
N+ ++GH+ HGK+ + L+ + ++ + S K D +E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 190 RRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-- 247
R I+I L +K Y+ I+D+PGH +F M AD A+L+V A +G
Sbjct: 68 RGITI-----DLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 122
Query: 248 -VMVNTERAIR-HAIQERL----PIVVVVNKVD 274
++TE R H + R I+V VNK+D
Sbjct: 123 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMD 155
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHM------------STFDPNSEKHTRYTDTRIDEQE 189
N+ ++GH+ HGK+ + L+ + ++ + S K D +E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 190 RRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG-- 247
R I+I L +K Y+ I+D+PGH +F M AD A+L+V A +G
Sbjct: 71 RGITI-----DLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 125
Query: 248 -VMVNTERAIR-HAIQERL----PIVVVVNKVD 274
++TE R H + R I+V VNK+D
Sbjct: 126 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMD 158
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202
V ++GH+ HGKT +D L T++ E + + LV
Sbjct: 7 VTIMGHVDHGKTTLLDKL--------------------RKTQVAAMEAGGITQHIGAFLV 46
Query: 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE 262
S K +D+PGH FS ++ D +L+V A +GVM T +I+HA
Sbjct: 47 SLPSGEK---ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA 103
Query: 263 RLPIVVVVNKVDR 275
+PIV+ +NK D+
Sbjct: 104 HVPIVLAINKCDK 116
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 67
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 68 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 125
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 126 VGVPYIIVFLNKCD 139
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 58
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 59 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 116
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 117 VGVPYIIVFLNKCD 130
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 298 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 351
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 352 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 409
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 410 VGVPYIIVFLNKCD 423
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 66
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 67 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 124
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 125 VGVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 67
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 68 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 125
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 126 VGVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 66
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 67 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 124
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 125 VGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ + + D +E+ R I+I S
Sbjct: 13 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SH 66
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 67 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 124
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 125 VGVPYIIVFLNKCD 138
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202
V+++GH+ HGKT +D H+ S + T + I +PM ++
Sbjct: 8 VSVLGHVDHGKTTLLD-------HIRGSAVASREAGGIT--------QHIGATEIPMDVI 52
Query: 203 -------LEDSNSKSYLCNI--MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTE 253
L+ + + L + +D+PGH F+ LAD A+LIVD EG T+
Sbjct: 53 EGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ 112
Query: 254 RAIRHAIQERLPIVVVVNKVDRL 276
A+ R P VV NK+DR+
Sbjct: 113 EALNILRMYRTPFVVAANKIDRI 135
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 112 IKFEVGVKDSSTYVSTQFLVGL--------MSNPTLVR-----NVALVGHLHHGKTVFMD 158
I+FEVG + V T F + MS R NV +GH+ HGKT
Sbjct: 257 IRFEVG--EGIEKVETDFAAEVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTA 314
Query: 159 MLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDS 218
+ T ++ + + D +E+ R I+I S V D+ ++ Y +D
Sbjct: 315 AI---TTVLAKTYGGAARAFDQIDNAPEEKARGITINT---SHVEYDTPTRHYAH--VDC 366
Query: 219 PGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVD 274
PGH ++ M DGA+L+V A +G M T I Q +P I+V +NK D
Sbjct: 367 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 423
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
N+ + GH+ HGKT +L E T D + Q+R I+I +
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIAS------------TSAHDKLPESQKRGITIDIGFSAF 68
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
LE+ Y ++D+PGH + + +A + D A+++VDA EG T +
Sbjct: 69 KLEN-----YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH 123
Query: 262 ERLPIVVVVNKVDRLITE 279
+PI+VV+ K D TE
Sbjct: 124 FNIPIIVVITKSDNAGTE 141
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQE-------RRISIK 195
V+++GH+ HGKT +D I + S +H T+ D E ++ SI+
Sbjct: 8 VSVLGHVDHGKTTLLDH-IRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKFSIR 66
Query: 196 AVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERA 255
L +D+PGH F+ LAD A+LIVD EG T+ A
Sbjct: 67 ETLPGLFF------------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEA 114
Query: 256 IRHAIQERLPIVVVVNKVDRL 276
+ R P VV NK+DR+
Sbjct: 115 LNILRXYRTPFVVAANKIDRI 135
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSE-KHTRYTDTRIDEQERRISIKAVPMS 200
NV +GH+ HGKT L T+ + + N E K D +E+ R I+I
Sbjct: 13 NVGTIGHVDHGKTTLTAAL---TYVAAAENRNVEVKDYGDIDKAREERARGITINTAH-- 67
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
+E +K + ++ D GH ++ M DGA+L+V AA+G M T I A
Sbjct: 68 --VEYETAKRHYSHV-DCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLAR 124
Query: 261 QERLP-IVVVVNKVD 274
Q + IVV +NKVD
Sbjct: 125 QVGVRYIVVFMNKVD 139
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 850 VEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQG 909
VE+ TP + + + L+ RRG + +P A +++AF+P+ E FG+ TDLR TQG
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILG--MEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 60
Query: 910 QA 911
+
Sbjct: 61 RG 62
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ K D +E+ R I+I A
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--- 58
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
+E S + + + D PGH ++ M DG +L+V A +G M T + A Q
Sbjct: 59 -VEYSTAARHYAHT-DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ 116
Query: 262 ERLP-IVVVVNKVD 274
+ +VV VNK D
Sbjct: 117 IGVEHVVVYVNKAD 130
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 31/163 (19%)
Query: 135 SNPTLVRNVALVGHLHHGKTVFMDMLIEQTHHMSTFD--------PNSEK----HTRYTD 182
SNP V ++ + GH+ GK+ + ++ + +++ NS K + D
Sbjct: 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLD 231
Query: 183 TRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIV 242
T +E+ R +++ + +S+ K Y I D+PGH +F M A AD AVL+V
Sbjct: 232 TTEEERARGVTMDVASTTF---ESDKKIY--EIGDAPGHRDFISGMIAGASSADFAVLVV 286
Query: 243 DAAEGVMVNTERAIRHAIQER-----------LPIVVVVNKVD 274
D+++ N ER Q R IVV VNK+D
Sbjct: 287 DSSQN---NFERGFLENGQTREHAYLLRALGISEIVVSVNKLD 326
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 34/123 (27%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIK-AVPMS 200
N+ +VGH+ HGKT L +TDT +E R I+IK +
Sbjct: 13 NIGMVGHVDHGKTTLTKALT----------------GVWTDTHSEELRRGITIKIGFADA 56
Query: 201 LVLEDSNSKSY----LC-------------NIMDSPGHVNFSDEMTAALRLADGAVLIVD 243
+ SN Y +C + +DSPGH M A L DGA+L++
Sbjct: 57 EIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIA 116
Query: 244 AAE 246
A E
Sbjct: 117 ANE 119
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T T+ + R I+I S
Sbjct: 13 NVGTIGHVDHGKTTLTAAI--TTVLAKTYGGAA---------------RGITINT---SH 52
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
V D+ ++ Y +D PGH ++ M DGA+L+V A +G M T I Q
Sbjct: 53 VEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 110
Query: 262 ERLP-IVVVVNKVD 274
+P I+V +NK D
Sbjct: 111 VGVPYIIVFLNKCD 124
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 39/175 (22%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIK-AVPMS 200
N+ +VGH+ HGKT L +TDT +E R I+IK +
Sbjct: 12 NIGMVGHVDHGKTTLTKALT----------------GVWTDTHSEELRRGITIKIGFADA 55
Query: 201 LVLEDSNSKSY----LC-------------NIMDSPGHVNFSDEMTAALRLADGAVLIVD 243
+ N Y +C + +D+PGH M A L DGA+L++
Sbjct: 56 EIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIA 115
Query: 244 AAEGVMVNTERAIRHAIQ--ERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296
A E R A+Q + I++ NK++ + E L + Y +++ IE
Sbjct: 116 ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL---ENYRQIKEFIE 167
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 39/175 (22%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIK-AVPMS 200
N+ +VGH+ HGKT L +TDT +E R I+IK +
Sbjct: 12 NIGMVGHVDHGKTTLTKALT----------------GVWTDTHSEELRRGITIKIGFADA 55
Query: 201 LVLEDSNSKSY----LC-------------NIMDSPGHVNFSDEMTAALRLADGAVLIVD 243
+ N Y +C + +D+PGH M A L DGA+L++
Sbjct: 56 EIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIA 115
Query: 244 AAEGVMVNTERAIRHAIQ--ERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296
A E R A+Q + I++ NK++ + E L + Y +++ IE
Sbjct: 116 ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL---ENYRQIKEFIE 167
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHM------------STFDPNSEKHTRYTDTRIDEQE 189
NV ++GH+ GK+ LI + + + S K+ D E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 190 RRISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM 249
R I+I + L + Y ++D+PGH +F M AD A+LI+ G
Sbjct: 69 RGITI-----DIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF 123
Query: 250 VNTERAIRHAIQER-----------LPIVVVVNKVDRL 276
E I Q R ++V VNK+D +
Sbjct: 124 ---EAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
NV +GH+ HGKT + T ++ K D +E+ R I+I A +
Sbjct: 16 NVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV-- 70
Query: 202 VLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQ 261
E S + + + D PGH ++ DG +L+V A +G T + A Q
Sbjct: 71 --EYSTAARHYAH-TDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQ 127
Query: 262 ERLP-IVVVVNKVD 274
+ +VV VNK D
Sbjct: 128 IGVEHVVVYVNKAD 141
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 33/157 (21%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQT-----HHMSTFDPNSEKHTR---YTDTRID-EQERRI 192
NV +GH+ GK+ ++ T + ++ +++ R Y +D QE R
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEG----- 247
K V + ++ K + I+D+PGH +F M AD AVL++ A +G
Sbjct: 79 KGKTVEVGRAYFETEKKHF--TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETG 136
Query: 248 ----------VMVNTERAIRHAIQERLPIVVVVNKVD 274
M+ ++H ++V++NK+D
Sbjct: 137 FEKGGQTREHAMLAKTAGVKH-------LIVLINKMD 166
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 142 NVALVGHLHHGKTVFMDML--IEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
N+ +VGH+ HGKT + + I + H Y +T I E S K P
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCE---SCKK-PE 65
Query: 200 SLVLEDS-------NSKSYLCNI--MDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
+ V E S + +L I +D+PGH M + L DGA+L+V A E
Sbjct: 66 AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 142 NVALVGHLHHGKTVFMDML--IEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
N+ +VGH+ HGKT + + I + H Y +T I E S K P
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCE---SCKK-PE 66
Query: 200 SLVLEDS-------NSKSYLCNI--MDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
+ V E S + +L I +D+PGH M + L DGA+L+V A E
Sbjct: 67 AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 122
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVD 274
+D PGH ++ M DGA+L+V A +G M T I Q +P I+V +NK D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 216 MDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLP-IVVVVNKVD 274
+D PGH ++ M DGA+L+V A +G M T I Q +P I+V +NK D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 39/175 (22%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIK-AVPMS 200
N+ VGH+ HGKT L +TDT +E R I+IK +
Sbjct: 12 NIGXVGHVDHGKTTLTKALT----------------GVWTDTHSEELRRGITIKIGFADA 55
Query: 201 LVLEDSNSKSY----LC-------------NIMDSPGHVNFSDEMTAALRLADGAVLIVD 243
+ N Y +C + +D+PGH A L DGA+L++
Sbjct: 56 EIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIA 115
Query: 244 AAEGVMVNTERAIRHAIQ--ERLPIVVVVNKVDRLITELKLPPKDAYHKLRHTIE 296
A E R A+Q + I++ NK++ + E L + Y +++ IE
Sbjct: 116 ANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKAL---ENYRQIKEFIE 167
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Query: 142 NVALVGHLHHGKTVFMDML--IEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPM 199
N+ +VGH+ HGKT L + H Y D I + + + P
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPR 69
Query: 200 SLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
+ +DSPGH M + L DGA+L++ A E
Sbjct: 70 CPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE 116
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSLV 202
V ++GH+ HGKT ++ + + T+ + I V
Sbjct: 7 VTIMGHVDHGKTSLLEYI---------------RSTKVASGEAGGITQHIGAYHV----- 46
Query: 203 LEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQE 262
+++ + +D+PGH F+ + D VL+V A +GVM T AI+HA
Sbjct: 47 ----ETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA 102
Query: 263 RLPIVVVVNKVDR 275
++P+VV VNK+D+
Sbjct: 103 QVPVVVAVNKIDK 115
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 142 NVALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVPMSL 201
N+ +VGH+ HGKT L++ + T K Y +T I E S K P +
Sbjct: 10 NIGVVGHVDHGKTT----LVQAITGIWT-----SKKLGYAETNIGVCE---SCKK-PEAY 56
Query: 202 VLEDS-------NSKSYLCNI--MDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
V E S + +L I +D+PGH M + L DGA+L+V A E
Sbjct: 57 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 110
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 24/118 (20%)
Query: 142 NVALVGHLHHGKTVFMDML--IEQTHHMSTFDPNSEKHTR--YTDTRIDEQERRISIKAV 197
N+ +VGH+ HGKT + + I + H SE+ + Y +T I E S K
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKH-------SEETIKLGYAETNIGVCE---SCKK- 58
Query: 198 PMSLVLEDS-------NSKSYLCNI--MDSPGHVNFSDEMTAALRLADGAVLIVDAAE 246
P + V E S + +L I +D+PGH M + L DGA+L+V A E
Sbjct: 59 PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 116
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 215 IMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTER--------AIRHAIQERLPI 266
I D+PGH ++ D A+++VDA GV T R I+H I
Sbjct: 108 IADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKH-------I 160
Query: 267 VVVVNKVD 274
VV +NK D
Sbjct: 161 VVAINKXD 168
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 142 NVALVGHLHHGKT------VFMDMLIEQTHHMSTFDPNSE---KHTRYTDTRIDE-QERR 191
N+ +GH+ GK+ +F+ ++++ M + ++ K + Y +D E R
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDK-RTMEKIEREAKEAGKESWYLSWALDSTSEER 103
Query: 192 ISIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVM-V 250
K V + ++ + + +++D+PGH + M AD VL++ A G
Sbjct: 104 EKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEA 161
Query: 251 NTERAIR---HAIQERLP----IVVVVNKVD 274
ER + HA+ R +VVV+NK+D
Sbjct: 162 GFERGGQTREHAVLARTQGINHLVVVINKMD 192
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 145 LVGHLHHGKTVFMDMLI------------EQTHHMSTFDPNSEKHTRYTDTRIDEQERRI 192
++GH+ GK+ M L+ + T +S K D +E+ER +
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAA 245
++ +N I+D+PGH +F + AD A+L VD +
Sbjct: 98 TVSICTSHFSTHRAN-----FTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 145
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 145 LVGHLHHGKTVFMDMLI------------EQTHHMSTFDPNSEKHTRYTDTRIDEQERRI 192
++GH+ GK+ M L+ + T +S K D +E+ER +
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAA 245
++ +N I+D+PGH +F + AD A+L VD +
Sbjct: 232 TVSICTSHFSTHRAN-----FTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 279
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 145 LVGHLHHGKT-----VFMDMLIEQTHHMSTFDPNSE-------KHTRYTDTRIDEQERRI 192
++GH+ GK+ + D+ I + SE K D +E+ER +
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 193 SIKAVPMSLVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAA 245
++ +N I+D+PGH +F + AD A+L VD +
Sbjct: 98 TVSICTSHFSTHRAN-----FTIVDAPGHRDFVPNAIXGISQADXAILCVDCS 145
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 213 CNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVVNK 272
+I D P + A+ AD + +V+ EGV E + + + P+V+ VNK
Sbjct: 81 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNK 140
Query: 273 VDRLITELKLPPKDAY 288
+D TE++ D Y
Sbjct: 141 LDN--TEMRANIYDFY 154
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|B Chain B, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|C Chain C, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|D Chain D, Adam-8 Metalloproteinase Domain With Bound Batimastat
Length = 208
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 240 LIVDAAEGVMVNTERAIRHAIQERLPIVVVVNKVDRLITELKL 282
++VD AE M+ +E A+RH + E VVN VD+L +L
Sbjct: 11 VVVDNAEFQMLGSEAAVRHRVLE------VVNHVDKLYQKLNF 47
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 42 HASDREVAATASNGWITASNDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPL 101
H + E+ SNGW+ D+ N++ + D+ + + +GE +T DE + +
Sbjct: 248 HGNQVELEVXGSNGWVRIGEHPDL-NRVTVFNDQGVVRPSLQSFGERFDTAFTDEVQDFV 306
Query: 102 EQPIIKPVKNIKFEVGVK 119
I+ + + G+K
Sbjct: 307 NNVIVGKQPEVTVDDGIK 324
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVP--MS 200
VA+VG + GK+ ++ L+ +S P + TR+ R + +K +P
Sbjct: 13 VAIVGKPNVGKSTLLNNLL--GTKVSIISPKA------GTTRM----RVLGVKNIPNEAQ 60
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
++ D+ Y D GH + + +L AD + ++DA EG E ++ I
Sbjct: 61 IIFLDTPG-IYEPKKSDVLGH-SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118
Query: 261 QE-RLPIVVVVNKVDRL 276
+ P++VV+NK+D++
Sbjct: 119 KPLNKPVIVVINKIDKI 135
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 143 VALVGHLHHGKTVFMDMLIEQTHHMSTFDPNSEKHTRYTDTRIDEQERRISIKAVP--MS 200
VA+VG + GK+ ++ L+ +S P + TR+ R + +K +P
Sbjct: 12 VAIVGKPNVGKSTLLNNLL--GTKVSIISPKA------GTTRM----RVLGVKNIPNEAQ 59
Query: 201 LVLEDSNSKSYLCNIMDSPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAI 260
++ D+ Y D GH + + +L AD + ++DA EG E ++ I
Sbjct: 60 IIFLDTPG-IYEPKKSDVLGH-SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 117
Query: 261 QE-RLPIVVVVNKVDRL 276
+ P++VV+NK+D++
Sbjct: 118 KPLNKPVIVVINKIDKI 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,720,343
Number of Sequences: 62578
Number of extensions: 1194248
Number of successful extensions: 3274
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3034
Number of HSP's gapped (non-prelim): 152
length of query: 989
length of database: 14,973,337
effective HSP length: 108
effective length of query: 881
effective length of database: 8,214,913
effective search space: 7237338353
effective search space used: 7237338353
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)